RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780458|ref|YP_003064871.1| 3-phosphoshikimate
1-carboxyvinyltransferase [Candidatus Liberibacter asiaticus str.
psy62]
(449 letters)
>gnl|CDD|30477 COG0128, AroA, 5-enolpyruvylshikimate-3-phosphate synthase [Amino
acid transport and metabolism].
Length = 428
Score = 285 bits (731), Expect = 2e-77
Identities = 144/450 (32%), Positives = 219/450 (48%), Gaps = 32/450 (7%)
Query: 6 KKSTIQSSYSCGLQGTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHY 65
+ L+GT+ PG +S+SH +++L +A GE+ I +L+S+D L T+ +
Sbjct: 1 MEKLTLVVKPSPLRGTVRAPGSKSISHRALLLAALAEGESTITNLLDSEDTLATLEALRA 60
Query: 66 LGARFTKKDREWIVQGVGNGCLLSPEYPLDFKGFDMGYGLMMGVV-GVYDFQTFFKGRAE 124
LGAR K+ +V+G G G L P LD L+ G++ +T G
Sbjct: 61 LGARIEKEGDTLVVRGTG-GELKEPPAVLDCGNSGTTLRLLTGLLALGSPGETVLTGDES 119
Query: 125 ILQPTIESLLAPLYQMGVQVKLPEDK-RLPLVLHGPRTPNPIVYKSPMDSVQSKSVVLLA 183
+ + + L+ L Q+G ++ E + LPL + G + P+ S Q S++LLA
Sbjct: 120 LRKRPMGPLVDALRQLGAKIDGREGEGYLPLTIKGGLKGGEVEIDGPVSSQQVSSLLLLA 179
Query: 184 GLNTPGIT----EVIEPVKTQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNL 239
L G T V+E DH +LK FGV++ E Y I G ++++ +
Sbjct: 180 PLLAEGTTIIVGGVLESKPYIDHTLDMLKAFGVEV-----ENEGYRFYIPGGQKLTPGDY 234
Query: 240 KIPGDSSIAFFPLAAALLIPGSD-IKLLNVLTNPLRVGIIDILREMGADITLSNSRIESG 298
+PGD S A F LAAA + P S I L NV NP GI+D+L +MGADI + + +
Sbjct: 235 DVPGDYSSAAFFLAAAAITPRSTGITLKNVQPNPTDKGILDVLEKMGADIEIGDDSV--- 291
Query: 299 ENIADIRVRFS-KIKGITISDNRLRSIVDEYPILLVISAFAEGETIIKGLAE--VMTSKQ 355
+RVR S ++KGI + + + D P L V++AFAEG T I+ E V S +
Sbjct: 292 -----LRVRGSGELKGIEVDMDD---MPDLAPTLAVLAAFAEGTTRIRNAEELRVKESDR 343
Query: 356 FSGIIECFNINNIQYEREGDYLMIKGVPGGKGLGCSTGHMVQSKFGYRVAMSFLVMGLAS 415
+ + ++ E D L+I G KG V S +R+AM+F V GL S
Sbjct: 344 IAAMATELRKLGVEVEETEDGLIITGGTKLKG-----AGTVDSYGDHRIAMAFAVAGLLS 398
Query: 416 EYSVVVDDYTMISTIFPDFINLMKTLGARI 445
E V +DD ++ FP F + +LGARI
Sbjct: 399 EGGVRIDDAECVAKSFPGFFEDLASLGARI 428
>gnl|CDD|30129 cd01556, EPSP_synthase, EPSP synthase domain. 3-phosphoshikimate
1-carboxyvinyltransferase
(5-enolpyruvylshikimate-3-phosphate synthase) (EC
2.5.1.19) catalyses the reaction between
shikimate-3-phosphate (S3P) and phosphoenolpyruvate
(PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP),
an intermediate in the shikimate pathway leading to
aromatic amino acid biosynthesis. The reaction is
phosphoenolpyruvate + 3-phosphoshikimate = phosphate +
5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in
bacteria and plants but not animals. The enzyme is the
target of the widely used herbicide glyphosate, which
has been shown to occupy the active site. In bacteria
and plants, it is a single domain protein, while in
fungi, the domain is found as part of a multidomain
protein with functions that are all part of the
shikimate pathway..
Length = 409
Score = 267 bits (683), Expect = 7e-72
Identities = 129/431 (29%), Positives = 206/431 (47%), Gaps = 29/431 (6%)
Query: 18 LQGTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKDREW 77
L G I +PG +S+SH +++L +A GE++I +L+SDD L T+ + LGA+ ++
Sbjct: 1 LSGEITVPGSKSISHRALLLAALAEGESRIENLLDSDDTLATLEALRALGAKIEEEGGTV 60
Query: 78 IVQGVGNGCLLSPEYPLDFKGFDMGYGLMMGVVGVYDFQTFFKGRAEILQPTIESLLAPL 137
+ G G G L PE LD L+ G++ + + G + + + L+ L
Sbjct: 61 EIVGGG-GLGLPPEAVLDCGNSGTTMRLLTGLLALQGGDSVLTGDESLRKRPMGRLVDAL 119
Query: 138 YQMGVQVKLPEDK-RLPLVLHGPRTPNPIVYKSPMDSVQSKSVVLLAGLNTPGITEVI-- 194
Q+G +++ E PL+ G + + S Q KS +LLA G T +I
Sbjct: 120 RQLGAEIEGREGGGYPPLIGGGGLKGGEVEIPGAVSS-QFKSALLLAAPLAEGPTTIIIG 178
Query: 195 --EPVKTQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDSSIAFFPL 252
E DH E +L+ FG ++ + ++ ++G ++ G + GD+S A F L
Sbjct: 179 ELESKPYIDHTERMLRAFGAEV----EVDGYRTITVKGGQKYKGPEYTVEGDASSAAFFL 234
Query: 253 AAALLIPGSDIKLLNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRVRFSKIK 312
AAA + +I + NV N GIID+L+EMGADI + N E+ K+K
Sbjct: 235 AAAAITGS-EIVIKNVGLNSGDTGIIDVLKEMGADIEIGNEDTVVVESGG-------KLK 286
Query: 313 GITISDNRLRSIVDEYPILLVISAFAEGETIIKGLAE--VMTSKQFSGIIECFNINNIQY 370
GI I N I DE P L V++AFAEG T I+ AE V S + + +
Sbjct: 287 GIDIDGND---IPDEAPTLAVLAAFAEGPTRIRNAAELRVKESDRIAAMATELRKLGADV 343
Query: 371 EREGDYLMIKGVPGGKGLGCSTGHMVQSKFGYRVAMSFLVMGLASEYSVVVDDYTMISTI 430
E D L+I+G P + +R+AMSF + GL +E V ++D ++
Sbjct: 344 EETEDGLIIEGGPLKGAGVEVYTYG-----DHRIAMSFAIAGLVAEGGVTIEDPECVAKS 398
Query: 431 FPDFINLMKTL 441
FP+F +++L
Sbjct: 399 FPNFFEDLESL 409
>gnl|CDD|144020 pfam00275, EPSP_synthase, EPSP synthase (3-phosphoshikimate
1-carboxyvinyltransferase).
Length = 415
Score = 199 bits (508), Expect = 1e-51
Identities = 116/434 (26%), Positives = 192/434 (44%), Gaps = 38/434 (8%)
Query: 18 LQGTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGA---RFTKKD 74
L G + +PG +S SH +++L +AAGE+ I +L+SDD + + LGA ++
Sbjct: 7 LNGEVKVPGSKSNSHRALLLAALAAGESTITNLLDSDDTRLMLEALRALGAEVIELDEEK 66
Query: 75 REWIVQGVGNGCLLSPEYPLDFK--GFDMGYGLMMGVVGVYDFQTFFKGRAEILQPTIES 132
IV+G+G E LD G M ++G + + + G I + I+
Sbjct: 67 TVVIVEGLGGSFEAPYELVLDLGNSGTAM--RPLLGRLALQSGEVVLTGDDSIGERPIDR 124
Query: 133 LLAPLYQMGVQVKLPEDKRLPLVLHGPRTPNPIVYKSPMDSVQSKSVVLLAGLNTPGITE 192
LL L Q+G +++ E + + + S S+++LA L G T
Sbjct: 125 LLDGLRQLGAEIEYREGYGYAPLKVRGLKLGGVHIDGSISSQFVTSLLMLAALLAEGTTI 184
Query: 193 VIEPVK--TQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDSSIAFF 250
+ D E +L +FG + + S+ I+G +++ G ++ GD S A +
Sbjct: 185 IENLASEPYIDDTENMLNKFGAKIEGSGT---ETSIYIKGGQKLPGVEYRVEGDRSSAAY 241
Query: 251 PLAAALLIPGSDIKLLNVLTNPLRVG--IIDILREMGADITLSNSRIESGENIADIRVRF 308
LAAA + G +K+ NV N L+ +IL +MGA+IT +DI V
Sbjct: 242 FLAAAAITGG-TVKVENVGINSLQGDRAADEILEKMGAEIT--------QGEDSDIVVGP 292
Query: 309 SKIKGITISDNRLRSIVDEYPILLVISAFAEGETIIKGLAEVMTSKQF---SGIIECFNI 365
++GI + + + D P V +AFAEG + I+G++E+ K+ +
Sbjct: 293 PGLRGIDVD---MNTAPDPAPTTAVQAAFAEGTSRIEGISEL-RVKETDRLFAMATELRK 348
Query: 366 NNIQYEREGDYLMIKGVPGGKGLG-CSTGHMVQSKFGYRVAMSFLVMGLASEYSVVVDDY 424
+ E D L+I V KG S G +R AM+F + GL +E V++DD
Sbjct: 349 LGAEVEEGPDGLIITAVVELKGAEVDSYGD-------HRAAMAFALAGLVAEGEVIIDDP 401
Query: 425 TMISTIFPDFINLM 438
FPDF +
Sbjct: 402 ECTDKSFPDFFEKL 415
>gnl|CDD|30127 cd01554, EPT-like, Enol pyruvate transferases family includes EPSP
synthases and UDP-N-acetylglucosamine enolpyruvyl
transferase. Both enzymes catalyze the reaction of
enolpyruvyl transfer..
Length = 408
Score = 184 bits (468), Expect = 5e-47
Identities = 133/428 (31%), Positives = 215/428 (50%), Gaps = 24/428 (5%)
Query: 18 LQGTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKDREW 77
L G I +PGD+S+SH S+I +A GET++ +L +DVL+TM+++ LG KD
Sbjct: 1 LHGIIRVPGDKSISHRSLIFASLAEGETKVYNILRGEDVLSTMQVLRDLGVEIEDKDGVI 60
Query: 78 IVQGVGNGCLLSPEYPLDFKGFDMGYGLMMGVVGVYDFQTFFKGRAEILQPTIESLLAPL 137
+QGVG L +P+ L+ L+ GV+ DF+ G + + ++ + PL
Sbjct: 61 TIQGVGMAGLKAPQNALNLGNSGTAIRLISGVLAGADFEVELFGDDSLSKRPMDRVTLPL 120
Query: 138 YQMGVQVKLPEDKRLPLVLHGPRTPNPIVYKSPMDSVQSKSVVLLAGLNTPGITEVIEPV 197
+MG + E++ LP +L G + PI Y+ P+ S Q KS ++ A L G T +IE
Sbjct: 121 KKMGASISGQEERDLPPLLKGGKNLGPIHYEDPIASAQVKSALMFAALLAKGETVIIEAA 180
Query: 198 K--TQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDSSIAFFPLAAA 255
K T +H E +L+ FG + ++ + ++G ++++G +PGD S A F L AA
Sbjct: 181 KEPTINHTENMLQTFGGHISVQGTK----KIVVQGPQKLTGQKYVVPGDISSAAFFLVAA 236
Query: 256 LLIPGSDIKLLNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRVRFSKIKGIT 315
+ PG + L NV N R GIID+LR MGA IE GE I V S +K
Sbjct: 237 AIAPGR-LVLQNVGINETRTGIIDVLRAMGAK-------IEIGE--DTISVESSDLKATE 286
Query: 316 ISDNRLRSIVDEYPILLVISAFAEGETIIKGLAE--VMTSKQFSGIIECFNINNIQYERE 373
I + ++DE PI+ +++ A+G T+IK E V + + + + N E
Sbjct: 287 ICGALIPRLIDELPIIALLALQAQGTTVIKDAEELKVKETDRIFVVADELNSMGADIEPT 346
Query: 374 GDYLMIKGVPGGKGLGCSTGHMVQSKFGYRVAMSFLVMGLASEYSVVVDDYTMISTIFPD 433
D ++IKG G V + +R+ M + L ++ V +D I+T +P
Sbjct: 347 ADGMIIKGKEK------LHGARVNTFGDHRIGMMTALAALVADGEVELDRAEAINTSYPS 400
Query: 434 FINLMKTL 441
F + +++L
Sbjct: 401 FFDDLESL 408
>gnl|CDD|31109 COG0766, MurA, UDP-N-acetylglucosamine enolpyruvyl transferase
[Cell envelope biogenesis, outer membrane].
Length = 421
Score = 51.7 bits (124), Expect = 4e-07
Identities = 87/462 (18%), Positives = 175/462 (37%), Gaps = 84/462 (18%)
Query: 18 LQGTICIPGDRSLSHFSIILGGI-AAGETQIRGVLESDDVLNTMRMMHYLGARFTKKDRE 76
L G + I G ++ + ++ + A + V + DV + ++ LGA+ +
Sbjct: 12 LNGEVTISGAKN-AALPLLAATLLADEPVTLTNVPDLSDVETMLELLRNLGAKVERDGDG 70
Query: 77 WIVQGVGNGCLLSPEYPLDF-KGFDMGYGLMMGVVGVYDFQTFFKGRAEILQP------- 128
+ + + S E P + + ++ ++ + G+A++ P
Sbjct: 71 ELE--IDAPNINSTEAPYELVRKMRASILVLGPLLARF-------GKAKVSLPGGCAIGA 121
Query: 129 -TIESLLAPLYQMGVQVKLPEDKRLPLVLHGPRTPNPIVYKSPMDSVQSKSVVLLAGLNT 187
++ L L +G ++++ + P+ SV + +++A +
Sbjct: 122 RPVDLHLKGLEALGAEIEIEHGY---IEASAPKGLKGAHIYLDKVSVGATENIMMAAVLA 178
Query: 188 PGITEV----IEPVKTQDHMEII-----LKEFGVDLL-IKSDTIEDYSVRIEGRKRISGC 237
G T + EP EI+ L + G + + TI IEG +++ G
Sbjct: 179 EGTTVIENAAREP-------EIVDLANFLNKMGAKIEGAGTSTI-----TIEGVEKLHGA 226
Query: 238 NLKIPGDSSIA-FFPLAAALLIPGSDIKLLNVLTNPLRVGIIDILREMGADITLSNSRIE 296
+ D A F +AAA I G D+ + NV L ++ LRE G DI I
Sbjct: 227 EHSVIPDRIEAGTFLVAAA--ITGGDVTIENVRPEHLEA-VLAKLREAGVDIEEGEDGIR 283
Query: 297 SGENIADIRVRFSKIKGITISDNRLRSIVDEYP--------ILLVISAFAEGETIIKGLA 348
+ + ++K + I YP + + AEG ++I
Sbjct: 284 -------VDMEGKRLKAVDIKT-------LPYPGFPTDMQAQFMALLTVAEGTSVIT--- 326
Query: 349 EVMTSKQFSGIIECFNIN-NIQYEREGDYLMIKGVPGGKGLGCSTGHMVQSKFGYRVAMS 407
E + +F + E + NI + EG+ +I+GV G ++ + R + +
Sbjct: 327 ETIFENRFMHVPELIRMGANI--KLEGNTAVIQGVEQLSG-----APVMATDL--RASAA 377
Query: 408 FLVMGLASEYSVVVDDYTMISTIFPDFINLMKTLGARIEWVD 449
++ GL +E +V+ + + ++ LGA+IE V+
Sbjct: 378 LVLAGLVAEGETIVNRVYHLDRGYERLEEKLRALGAKIERVE 419
Score = 30.5 bits (69), Expect = 0.87
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 227 RIEGRKRISGCNLKIPGDSSIAFFPLAAALLIPGSDIKLLNVLTNPLRVGI---IDILRE 283
IEG ++G + I G + A LAA LL + L NV P + +++LR
Sbjct: 5 IIEGGNPLNGE-VTISGAKNAALPLLAATLLADE-PVTLTNV---PDLSDVETMLELLRN 59
Query: 284 MGADITLSNSRI 295
+GA +
Sbjct: 60 LGAKVERDGDGE 71
>gnl|CDD|30128 cd01555, UdpNAET, UDP-N-acetylglucosamine enolpyruvyl transferase
catalyzes enolpyruvyl transfer as part of the first step
in the biosynthesis of peptidoglycan, a component of the
bacterial cell wall. The reaction is phosphoenolpyruvate
+ UDP-N-acetyl-D-glucosamine = phosphate +
UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine. This
enzyme is of interest as a potential target for
anti-bacterial agents. The only other known enolpyruvyl
transferase is the related
5-enolpyruvylshikimate-3-phosphate synthase..
Length = 400
Score = 50.5 bits (121), Expect = 9e-07
Identities = 74/354 (20%), Positives = 133/354 (37%), Gaps = 67/354 (18%)
Query: 18 LQGTICIPGDRSLSHFSIILGGI-AAGETQIRGVLESDDVLNTMRMMHYLGARFTKKDRE 76
L G + I G ++ + I+ + +R V + DV + ++ LGA+ +
Sbjct: 1 LSGEVRISGAKN-AALPILAAALLTDEPVTLRNVPDLLDVETMIELLRSLGAKVEFEGEN 59
Query: 77 WIVQGVGNGCLLSPEYPLDFKGFDMGYGLMMG-VVGVYDFQTFFKGRAEILQP------- 128
+V N + S E P + L++G ++ + G A + P
Sbjct: 60 TLVIDASN--INSTEAPYELVRKMRASILVLGPLLARF-------GEARVSLPGGCAIGA 110
Query: 129 -TIESLLAPLYQMGVQVKLPEDK---RLPLVLHGPRTPNPIVYKSPMDSVQSKSVVLLAG 184
++ L L +G ++++ + + L G I SV + +++A
Sbjct: 111 RPVDLHLKGLEALGAKIEIEDGYVEAKAAGRLKG----ARIYL--DFPSVGATENIMMAA 164
Query: 185 LNTPGITEV----IEPVKTQDHMEII-LKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNL 239
+ G T + EP EI+ L F + K + ++RIEG +R+ G
Sbjct: 165 VLAEGTTVIENAAREP-------EIVDLANFLNKMGAKIEGAGTDTIRIEGVERLHGAEH 217
Query: 240 KIPGDS-SIAFFPLAAALLIPGSDIKLLNVLTNPLRVGIIDILREMGADITLSNSRIESG 298
+ D F +AAA I G DI + NV+ L ++ LREMGA I + I
Sbjct: 218 TVIPDRIEAGTFLVAAA--ITGGDITVENVIPEHLEA-VLAKLREMGAKIEIGEDGIR-- 272
Query: 299 ENIADIRVRFSKIKGITISDNRLRSIVDEYP--------ILLVISAFAEGETII 344
+ ++K + I YP + + AEG ++I
Sbjct: 273 -----VDGDGGRLKAVDIET-------APYPGFPTDLQAQFMALLTQAEGTSVI 314
Score = 38.5 bits (90), Expect = 0.004
Identities = 56/235 (23%), Positives = 96/235 (40%), Gaps = 44/235 (18%)
Query: 127 QPTIESLLAPLYQMGVQVKLPEDKRLPLVLHGPRTPNPIVYKSPMDSVQSKSVVLLAGLN 186
+P I L L +MG +++ + + G + + D +++ + ++ A +
Sbjct: 179 EPEIVDLANFLNKMGAKIEGAGTDTI--RIEGVERLHGAEHTVIPDRIEAGTFLVAAAIT 236
Query: 187 TPGITEVIEPVKTQDHMEII---LKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKI-- 241
IT +E V +H+E + L+E G + I D I V +G R+ +++
Sbjct: 237 GGDIT--VENVI-PEHLEAVLAKLREMGAKIEIGEDGIR---VDGDG-GRLKAVDIETAP 289
Query: 242 -PGDSSIAFFP-------LAAALLIPGSDIKLLNVLTNPLRVGIIDILREMGADITLSNS 293
PG FP +A G+ + + N R +D L MGADI +
Sbjct: 290 YPG------FPTDLQAQFMALLTQAEGTSVITETIFEN--RFMHVDELNRMGADIKVEG- 340
Query: 294 RIESGENIADIRVRFSKIKGITISDNRLRSIVDEYPILLVISAF-AEGETIIKGL 347
N A IR +K+ G + LR+ LV++ AEGETII +
Sbjct: 341 ------NTAIIR-GVTKLSGAPVMATDLRAGAA-----LVLAGLAAEGETIISNI 383
>gnl|CDD|35911 KOG0692, KOG0692, KOG0692, Pentafunctional AROM protein [Amino acid
transport and metabolism].
Length = 595
Score = 42.7 bits (100), Expect = 2e-04
Identities = 95/480 (19%), Positives = 177/480 (36%), Gaps = 52/480 (10%)
Query: 2 SFVCKKSTIQSSYSCGLQGTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTMR 61
V + + S G I +PG +SLS+ +++L ++ G T + +L SDD +
Sbjct: 95 EIVLQPDIREIS------GLIKLPGSKSLSNRALLLAALSEGTTVVDNLLNSDDTNYMLS 148
Query: 62 MMHYLG-ARFTKKD-REWIVQGVGNGCLLS----PEYPLDFKGFDMGY-GLMMGVVGVYD 114
+ LG T ++ +V+G G + E L G M V
Sbjct: 149 ALKTLGLNVETWEENNRAVVEGCGGEFSIDSKSDIELYLGNAGTAMRPLTEFAAAVTAKG 208
Query: 115 FQTFF--KGRAEILQPTIESLLAPLYQMGVQVKLPEDKRLPLV----LHGPRTPNPIVYK 168
+ G + + I L+ L Q+G ++ P V G P V
Sbjct: 209 GNKSYVLDGVHRMQERPIGDLVVGLKQLGADIECTLGTNCPPVDVNANGG--LPGGKVKL 266
Query: 169 SPMDSVQSKSVVLLAG--------LNTPGITEVIEPVKTQDHMEIILKEFGVDLLIKSDT 220
S S Q + +L+ + + P + +++ FGV+ ++ T
Sbjct: 267 SGSVSSQYLTALLMCAPLALGDVTIEIVDGKLISVP--YVEMTLKLMERFGVN--VEHST 322
Query: 221 IEDYSVRIEGRKRISGCNLKIPGDSSIAFFPLAAALLIPGSDIKLLNVLTNPLR--VGII 278
D I G+K S N + GD+S A + LA A I G + + T L+
Sbjct: 323 SWDRFYVIGGQKYKSPGNAYVEGDASSASYFLAGAA-ITGETVTVEGCGTTSLQGDAKFA 381
Query: 279 DILREMGADIT-LSNSRIESGENIADIRVRFSKIKGITISDNRLRSIVDEYPILLVISAF 337
++L MG ++ NS +G +R + + + + + D L V++ F
Sbjct: 382 EVLEPMGCKVSQTENSVTVTGPPRGAFGMRHLR------AIDVMNKMPDVAMTLSVVALF 435
Query: 338 A-----EGETIIKGLAEVMTSKQFSGIIECFNINNIQY--EREGDYLMIKGVPGGKGLGC 390
A T I+ +A + I C + + E D + P K L
Sbjct: 436 AGLRSSGDPTTIRDVASWRVKETERMIAICTELRKLGATVEEGSDGYCVIT-PPEKKLKL 494
Query: 391 STGHMVQSKFGYRVAMSFLVMGLASEYSVVVDDYTMISTIFPDFINLM-KTLGARIEWVD 449
+ + +R+AM+F V+ ++ + ++D FPD+ ++ + ++ +
Sbjct: 495 AEIDGSLTYDDHRMAMAFSVLAACADVPITINDPGCTRKTFPDYFQVLERITKHKLTGAE 554
>gnl|CDD|30495 COG0146, HyuB, N-methylhydantoinase B/acetone carboxylase, alpha
subunit [Amino acid transport and metabolism / Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 563
Score = 34.8 bits (80), Expect = 0.053
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 272 PLRVGIIDILREMGADITLSNSRIESGENIADIRVRFSKIKGITISDNRLRSIVDEYPIL 331
P+++ RE I L N R NI D++ ++I R+R ++DEY +
Sbjct: 152 PVKLVKNGEFREDILRILLRNVRTPD-YNIGDLK---AQIAANLKGRRRVRELIDEYGLD 207
Query: 332 LVISAFAE----GETIIKGLAEVMTSKQFSGI 359
V A E E ++ + + ++
Sbjct: 208 TVEEAMKEVIEYAERAVRAVIRKLPDGKYEFE 239
>gnl|CDD|37135 KOG1924, KOG1924, KOG1924, RhoA GTPase effector DIA/Diaphanous
[Signal transduction mechanisms, Cytoskeleton].
Length = 1102
Score = 34.6 bits (79), Expect = 0.054
Identities = 25/139 (17%), Positives = 48/139 (34%), Gaps = 26/139 (18%)
Query: 113 YDFQTFFKGRAEILQPTIESLLAPLYQMGVQVKLPEDKRLPLVLHGPRTPNPIV------ 166
D+ T + + +L MG + + E+KR PL+ ++
Sbjct: 68 NDYPTAQGLQDIGFSLSSNEVLELFELMGEDMNINEEKRKPLLDKDLPEKRKMISQYLQM 127
Query: 167 -----------YKSPMDSVQSKSVVLLAGLNTPGITEVIEPVKTQDHMEII--LKEFGVD 213
S + V L +GL+T + E +E ++ + + +FGV+
Sbjct: 128 KMMIRKSDNEAKGSSPEYVVE----LRSGLSTKKLLECLESLRVSLTSNPVSWVNKFGVE 183
Query: 214 LLIKSDTIEDYSVRIEGRK 232
L + D R+ K
Sbjct: 184 GL---GLLLDVLKRLRDSK 199
>gnl|CDD|146300 pfam03587, EMG1, EMG1/NEP1 methyltransferase. Members of this
family are essential for 40S ribosomal biogenesis. The
structure of EMG1 has revealed that it is a novel member
of the superfamily of alpha/beta knot fold
methyltransferases.
Length = 202
Score = 31.8 bits (73), Expect = 0.38
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 23/87 (26%)
Query: 259 PGSDIKLLNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRVRFSKIKGITISD 318
S LL V+ NPL D+L E I LS E GE +V ++
Sbjct: 108 AESGEPLLKVVKNPLT----DLLPEGSKKILLS----EKGE-----KVSPKEL------- 147
Query: 319 NRLRSIVDEYPILLVISAFAEGETIIK 345
+ +E P+ VI AF G+ +
Sbjct: 148 --ASELKNE-PVAFVIGAFPHGDFSDE 171
>gnl|CDD|31390 COG1197, Mfd, Transcription-repair coupling factor (superfamily II
helicase) [DNA replication, recombination, and repair /
Transcription].
Length = 1139
Score = 30.2 bits (68), Expect = 1.1
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 195 EPVKTQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGC 237
E ++ + +EI + V I D I D ++R+E KR++
Sbjct: 985 EVLEEEKEVEI---DLPVPAFIPEDYIPDDNLRLELYKRLANA 1024
>gnl|CDD|36223 KOG1005, KOG1005, KOG1005, Telomerase catalytic subunit/reverse
transcriptase TERT [Replication, recombination and
repair, Chromatin structure and dynamics].
Length = 888
Score = 28.8 bits (64), Expect = 3.3
Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 9/97 (9%)
Query: 349 EVMTSKQFSGIIECFNINNIQYEREGDYLMIKGVPGGKGLGCSTGHMVQSKFGYRVAMSF 408
E+++S +I N Y+ KG+P G L H+ Y
Sbjct: 602 EMLSSSDLFSVIRNMLSTNYVKIGGKSYVQKKGIPQGSILSSLLCHLY-----YGDLEDK 656
Query: 409 LVMGLASEYSVV----VDDYTMISTIFPDFINLMKTL 441
+ S+V VDD+ I+T +K L
Sbjct: 657 YFSFEKEDGSIVLLRYVDDFLFITTENDQAKKFLKLL 693
>gnl|CDD|37019 KOG1808, KOG1808, KOG1808, AAA ATPase containing von Willebrand
factor type A (vWA) domain [General function prediction
only].
Length = 1856
Score = 27.7 bits (61), Expect = 6.6
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 46 QIRGVLESDDVLNTMRMMHYLGARFTKKDREWIVQGVGNGCLLSPE 91
Q+ + E T+R + RFT+ E Q NG +L
Sbjct: 621 QLSRIFEQKPSFGTLRDLFRWLLRFTETIAESNDQLAENGYMLLSS 666
>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control
protein 7-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), (Cdc7)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Cdc7-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this subfamily include
Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae
Cdc15, Arabidopsis thaliana mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK) epsilon, and
related proteins. MAPKKKs phosphorylate and activate
MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals. Fission yeast Cdc7
is essential for cell division by playing a key role in
the initiation of septum formation and cytokinesis.
Budding yeast Cdc15 functions to coordinate mitotic exit
with cytokinesis. Arabidopsis MAPKKK epsilon is required
for pollen development in the plasma membrane.
Length = 254
Score = 27.6 bits (62), Expect = 8.0
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 168 KSPMDSVQSKSVVLLAGLNTPGITEVIEPVKTQDHMEIILKEF 210
+ + S+ + + LL L P I + I ++T D + IIL E+
Sbjct: 40 EEALKSIMQE-IDLLKNLKHPNIVKYIGSIETSDSLYIIL-EY 80
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.322 0.141 0.409
Gapped
Lambda K H
0.267 0.0798 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,396,756
Number of extensions: 296623
Number of successful extensions: 739
Number of sequences better than 10.0: 1
Number of HSP's gapped: 690
Number of HSP's successfully gapped: 23
Length of query: 449
Length of database: 6,263,737
Length adjustment: 97
Effective length of query: 352
Effective length of database: 4,167,664
Effective search space: 1467017728
Effective search space used: 1467017728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.4 bits)