RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780458|ref|YP_003064871.1| 3-phosphoshikimate
1-carboxyvinyltransferase [Candidatus Liberibacter asiaticus str.
psy62]
(449 letters)
>gnl|CDD|179423 PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase;
Provisional.
Length = 435
Score = 340 bits (874), Expect = 5e-94
Identities = 161/457 (35%), Positives = 241/457 (52%), Gaps = 60/457 (13%)
Query: 17 GLQGTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKDRE 76
L GT+ +PG +S+SH +++L +A GET I +L S+D L T+ + LG D E
Sbjct: 12 PLSGTVRVPGSKSISHRALLLAALAEGETTITNLLRSEDTLATLNALRALGVEIE--DDE 69
Query: 77 WIVQGVGNGCLLSPEYPLDFKGFDMGYG-------LMMGVVGVYDFQTFFKGRAEILQPT 129
+V+GVG G L PE LD G L+ G++ + + G + +
Sbjct: 70 VVVEGVGGGGLKEPEDVLDC-------GNSGTTMRLLTGLLALQPGEVVLTGDESLRKRP 122
Query: 130 IESLLAPLYQMGVQVKLPEDKRLPLVLHGPRTPNPIVYKSPMDSVQSKSVVLLAGLNTPG 189
+ LL PL QMG +++ ++ LPL + G + PI Y P+ S KS++LLA L G
Sbjct: 123 MGRLLDPLRQMGAKIEGRDEGYLPLTIRGGKKGGPIEYDGPVSSQFVKSLLLLAPLFAEG 182
Query: 190 I--TEVIEPVKTQDHMEI---ILKEFGVDLLIKSDTIEDYS-VRIEGRKRISGCNLKIPG 243
T VIEP+ ++ H EI +L+ FGV+ +++ Y + I+G +R+ G ++ +PG
Sbjct: 183 DTETTVIEPLPSRPHTEITLRMLRAFGVE--VENVEGWGYRRIVIKGGQRLRGQDITVPG 240
Query: 244 DSSIAFFPLAAALLIPGSDIKLLNVLTNPLRVG--IIDILREMGADITLSNSRIESGENI 301
D S A F LAAA + GS++ + NV N + G IID+L +MGADI + N R E GE +
Sbjct: 241 DPSSAAFFLAAAAITGGSEVTITNVGLNSTQGGKAIIDVLEKMGADIEIENER-EGGEPV 299
Query: 302 ADIRVRFSKIKGITISDNRLRSIVDEYPILLVISAFAEGETIIKGLAE----------VM 351
DIRVR S++KGI I + I+DE P L V++AFAEG T+I+ E M
Sbjct: 300 GDIRVRSSELKGIDID---IPDIIDEAPTLAVLAAFAEGTTVIRNAEELRVKETDRIAAM 356
Query: 352 TS--KQFSGIIECFNINNIQYEREGDYLMIKGVPGGKGLGCSTGHMVQSKFGYRVAMSFL 409
+ ++ +E E E D L+I G P + H R+AM+F
Sbjct: 357 ATELRKLGAEVE---------ETE-DGLIITGGPLAGVVDSYGDH--------RIAMAFA 398
Query: 410 VMGLASEYSVVVDDYTMISTIFPDFINLMKTLGARIE 446
+ GLA+E V +DD ++ FPDF + +LGA IE
Sbjct: 399 IAGLAAEGPVTIDDPECVAKSFPDFFEDLASLGANIE 435
>gnl|CDD|184828 PRK14806, PRK14806, bifunctional cyclohexadienyl dehydrogenase/
3-phosphoshikimate 1-carboxyvinyltransferase;
Provisional.
Length = 735
Score = 276 bits (709), Expect = 6e-75
Identities = 157/434 (36%), Positives = 243/434 (55%), Gaps = 19/434 (4%)
Query: 18 LQGTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKDREW 77
++GTI +PGD+S+SH SI+LG +A G T++ G LE +D L T++ +G
Sbjct: 312 VKGTIRVPGDKSISHRSIMLGSLAEGVTEVEGFLEGEDALATLQAFRDMGVVIEGPHNGR 371
Query: 78 I-VQGVGNGCLLSPEYPLDFKGFDMGYGLMMGVVGVYDFQTFFKGRAEILQPTIESLLAP 136
+ + GVG L +P PL L+ G++ F + G A + + +E + P
Sbjct: 372 VTIHGVGLHGLKAPPGPLYMGNSGTSMRLLSGLLAAQSFDSVLTGDASLSKRPMERVAKP 431
Query: 137 LYQMGVQVKLPEDKRLPLVLHGPRTPNPIVYKSPMDSVQSKSVVLLAGLNTPGITEVIEP 196
L +MG ++ E+ R PL + G + I Y PM S Q KS +LLAGL G T V EP
Sbjct: 432 LREMGAVIETGEEGRPPLSIRGGQRLKGIHYDLPMASAQVKSCLLLAGLYAEGETSVTEP 491
Query: 197 VKTQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGD-SSIAFFPLAAA 255
T+DH E +L+ FG + ++ +TI +EG +++ ++++P D SS AFF +AA+
Sbjct: 492 APTRDHTERMLRGFGYPVKVEGNTI-----SVEGGGKLTATDIEVPADISSAAFFLVAAS 546
Query: 256 LLIPGSDIKLLNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRVRFSKIKGIT 315
+ GS++ L +V NP R G+IDIL+ MGADITL N R GE +ADIRVR +++KGI
Sbjct: 547 IA-EGSELTLEHVGINPTRTGVIDILKLMGADITLENEREVGGEPVADIRVRGARLKGID 605
Query: 316 ISDNRLRSIVDEYPILLVISAFAEGETIIKGLAE--VMTSKQFSGIIECFNINNIQYERE 373
I ++++ +DE+P+L V +A AEG T++ G E V S + + + I E
Sbjct: 606 IPEDQVPLAIDEFPVLFVAAACAEGRTVLTGAEELRVKESDRIQVMADGLKTLGIDCEPT 665
Query: 374 GDYLMIKG-VPGGKGLGCSTGHMVQSKFGYRVAMSFLVMGLASEYSVVVDDYTMISTIFP 432
D ++I+G + GG G V+S +R+AMSF V L + + + D ++T FP
Sbjct: 666 PDGIIIEGGIFGG-------GE-VESHGDHRIAMSFSVASLRASGPITIHDCANVATSFP 717
Query: 433 DFINLMKTLGARIE 446
+F+ L +G RIE
Sbjct: 718 NFLELANQVGIRIE 731
>gnl|CDD|162316 TIGR01356, aroA, 3-phosphoshikimate 1-carboxyvinyltransferase.
Sequences scoring between the trusted and noise cutoffs
include fragmentary and aberrant sequences in which
generally well-conserved motifs are missing or altererd,
but no example of a protein known to have a different
function.
Length = 409
Score = 257 bits (659), Expect = 4e-69
Identities = 144/434 (33%), Positives = 216/434 (49%), Gaps = 34/434 (7%)
Query: 20 GTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKDREWIV 79
G I PG +S++H ++IL +A GET++R +L S+D L T+ + LGA+ ++
Sbjct: 1 GEIRAPGSKSITHRALILAALAEGETRVRNLLRSEDTLATLDALRALGAKIEDGGEVAVI 60
Query: 80 QGVGNGCLLSPEYPLDFKGFDMGYGLMMGVVGVYDFQTFFKGRAEILQPTIESLLAPLYQ 139
+GVG P+ LD L+ GV+ + D + G + + + L+ L Q
Sbjct: 61 EGVGG---KEPQAELDLGNSGTTARLLTGVLALADGEVVLTGDESLRKRPMGRLVDALRQ 117
Query: 140 MGVQVK-LPEDKRLPLVLHGPRTPNPIVYKSPMDSVQSKSVVLLAG--LNTPGITEVIEP 196
+G ++ L LPL + GP P IVY S S Q KS +LLA L GIT V EP
Sbjct: 118 LGAEISSLEGGGSLPLTISGPL-PGGIVYISGSASSQYKSALLLAAPALQAVGITIVGEP 176
Query: 197 VKTQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDSSIAFFPLAAAL 256
+K++ ++EI L G ++ + + + + G ++ +PGD S A F LAAA
Sbjct: 177 LKSRPYIEITLDLLGSF-GVEVERSDGRKIVVPGGQKYGPQGYDVPGDYSSAAFFLAAA- 234
Query: 257 LIPGSDIKLLNVLTNPLRVG--IIDILREMGADITLSNSRIESGENIADIRVRF-SKIKG 313
I G + L N+ NP + II +L EMGADI + D+ V S +KG
Sbjct: 235 AITGGRVTLENLGINPTQGDKAIIIVLEEMGADIEVEED---------DLIVEGASGLKG 285
Query: 314 ITISDNRLRSIVDEYPILLVISAFAEGETIIKGLAE--VMTSKQFSGIIECFNINNIQYE 371
I I + ++DE P L V++AFAEG T I G E V S + + I E + E
Sbjct: 286 IKIDMD---DMIDELPTLAVLAAFAEGVTRITGAEELRVKESDRIAAIAEELRKLGVDVE 342
Query: 372 REGDYLMIKGVPGGKGLGCSTGHMVQSKFG-YRVAMSFLVMGLASEYSVVVDDYTMISTI 430
D L I+G KG T FG +R+AM+F V GL +E V++DD ++
Sbjct: 343 EFEDGLYIRGKKELKGAVVDT-------FGDHRIAMAFAVAGLVAEGEVLIDDPECVAKS 395
Query: 431 FPDFINLMKTLGAR 444
FP F ++++ LGA
Sbjct: 396 FPSFFDVLERLGAN 409
Score = 34.9 bits (81), Expect = 0.046
Identities = 60/302 (19%), Positives = 110/302 (36%), Gaps = 63/302 (20%)
Query: 175 QSKS----VVLLAGLNTPGITEVIEPVKTQD--HMEIILKEFGVDLLIKSDTIEDYSVRI 228
SKS ++LA L G T V ++++D L+ G + +
Sbjct: 7 GSKSITHRALILAAL-AEGETRVRNLLRSEDTLATLDALRALGAKIEDGGEVAV------ 59
Query: 229 EGRKRISGCNLKIP------GDSSIAFFPLAAALLIPGSDIKLLNVLTNPLRVG------ 276
I G K P G+S L L + ++ VLT +
Sbjct: 60 -----IEGVGGKEPQAELDLGNSGTTARLLTGVLALADGEV----VLTGDESLRKRPMGR 110
Query: 277 IIDILREMGADITLSNSRIESGENIADIRVRFSKIKGITISDNRLRSIVD-EYPILLVIS 335
++D LR++GA+I +S G + + + G + + +Y L+++
Sbjct: 111 LVDALRQLGAEI---SSL--EGGGSLPLTIS-GPLPGGIV---YISGSASSQYKSALLLA 161
Query: 336 AFAEGETIIKGLAEVMTSKQFSGI-IECFNINNIQYEREGDYLMIKGVPGGKGLGCSTGH 394
A A I + E + S+ + I ++ ++ ER ++ VPGG+ G
Sbjct: 162 APALQAVGITIVGEPLKSRPYIEITLDLLGSFGVEVERSDGRKIV--VPGGQKYGP---- 215
Query: 395 MVQSKFGYRV------AMSFLVMGLASEYSVVVDDYTMISTIFPD-FINLMKTLGARIEW 447
GY V A FL + V +++ + T I +++ +GA IE
Sbjct: 216 -----QGYDVPGDYSSAAFFLAAAAITGGRVTLENLGINPTQGDKAIIIVLEEMGADIEV 270
Query: 448 VD 449
+
Sbjct: 271 EE 272
>gnl|CDD|183343 PRK11861, PRK11861, bifunctional prephenate
dehydrogenase/3-phosphoshikimate
1-carboxyvinyltransferase; Provisional.
Length = 673
Score = 67.4 bits (164), Expect = 6e-12
Identities = 93/432 (21%), Positives = 188/432 (43%), Gaps = 32/432 (7%)
Query: 19 QGTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKDREWI 78
QGT+ +PG +S+S+ ++L +A GET + +L+SDD + + LG + + +D
Sbjct: 252 QGTVRLPGSKSISNRVLLLAALAEGETTVTNLLDSDDTRVMLDALTKLGVKLS-RDGGTC 310
Query: 79 VQGVGNGCLLSPEYPLDFKGFDMGYGLMMGVVGVYDFQTFFKGRAEILQPTIESLLAPLY 138
V G G + L + + V + G + + I L+ L
Sbjct: 311 VVGGTRGAFTAKTADLFLGNAGTAVRPLTAALAVNGGEYRIHGVPRMHERPIGDLVDGLR 370
Query: 139 QMGVQVKLPEDKRLPLVLHGPRTPN---PIVYKSPMDSVQSKSVV----LLAGLNTPGIT 191
Q+G ++ ++ P + P T + PI + + S +++ L+ + +
Sbjct: 371 QIGARIDYEGNEGFPPLRIRPATISVDAPIRVRGDVSSQFLTALLMTLPLVKAKDGASVV 430
Query: 192 EVIEPVKTQDHMEIILK---EFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDSSIA 248
E+ + ++ ++EI +K FGV ++ D + ++V R R G + + GD+S A
Sbjct: 431 EIDGELISKPYIEITIKLMARFGVT--VERDGWQRFTVPAGVRYRSPG-TIMVEGDASSA 487
Query: 249 FFPLAAALLIPGSDIKLLNVLTNPLR--VGIIDILREMGADITLSNSRIESGENIADIRV 306
+ LAA L G +++ V ++ VG + L +MGA++T+ + IE + I
Sbjct: 488 SYFLAAGAL-GGGPLRVEGVGRASIQGDVGFANALMQMGANVTMGDDWIE----VRGIGH 542
Query: 307 RFSKIKGITISDNRLRSIVDEYPILLVISAFAEGETIIKGLA--EVMTSKQFSGIIECFN 364
++ I + N I D + V + FA+G + ++ + V + + + +
Sbjct: 543 DHGRLAPIDMDFNL---IPDAAMTIAVAALFADGPSTLRNIGSWRVKETDRIAAMATELR 599
Query: 365 INNIQYEREGDYLMIKGVPGGKGLGCSTGHMVQSKFGYRVAMSFLVMGLASEYSVVVDDY 424
E DYL++ P + + + + +R+AM F ++ L V ++D
Sbjct: 600 KVGATVEEGADYLVV--TPPAQ---LTPNASIDTYDDHRMAMCFSLVSLGG-VPVRINDP 653
Query: 425 TMISTIFPDFIN 436
+ FPD+ +
Sbjct: 654 KCVGKTFPDYFD 665
>gnl|CDD|177972 PLN02338, PLN02338, 3-phosphoshikimate 1-carboxyvinyltransferase.
Length = 443
Score = 64.0 bits (156), Expect = 7e-11
Identities = 101/444 (22%), Positives = 191/444 (43%), Gaps = 35/444 (7%)
Query: 18 LQGTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFT--KKDR 75
+ GT+ +PG +SLS+ ++L ++ G T + +L+SDD+ + + LG ++
Sbjct: 12 ISGTVKLPGSKSLSNRILLLAALSEGTTVVDNLLDSDDIRYMLGALKTLGLNVEEDSENN 71
Query: 76 EWIVQGVGNGCLLSPEYPLDFKGFDMGYGLMM-----GVVGVYDFQTF-FKGRAEILQPT 129
+V+G G +S + D + F G M V ++ G + +
Sbjct: 72 RAVVEGCGGKFPVSGDSKEDVELFLGNAGTAMRPLTAAVTAAGGNASYVLDGVPRMRERP 131
Query: 130 IESLLAPLYQMGVQVKLPEDKRLPLVLHGPRT--PNPIVYKSPMDSVQSKSVVLLAG-LN 186
I L+ L Q+G V+ P V P V S S Q + +L+A L
Sbjct: 132 IGDLVDGLKQLGADVECTLGTNCPPVRVNAAGGLPGGKVKLSGSISSQYLTALLMAAPLA 191
Query: 187 TPGIT-EVIEPVKTQDHMEIILK---EFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIP 242
+ E+++ + + ++E+ LK FGV + SD+ + + ++ G+K S N +
Sbjct: 192 LGDVEIEIVDKLISVPYVEMTLKLMERFGVSVEH-SDSWDRFFIK-GGQKYKSPGNAYVE 249
Query: 243 GDSSIAFFPLAAALLIPGSDIKLLNVLTNPLR--VGIIDILREMGADITLSNSRIESGEN 300
GD+S A + LA A I G + + T L+ V ++L +MGA + + + +
Sbjct: 250 GDASSASYFLAGA-AITGGTVTVEGCGTTSLQGDVKFAEVLEKMGAKVEWTENSVTVTGP 308
Query: 301 IADIRVRFSKIKGITISDNRLRSIVDEYPILLVISAFAEGETIIKGLA--EVMTSKQFSG 358
D +K I ++ N+ + D L V++ FA+G T I+ +A V +++
Sbjct: 309 PRDAFGG-KHLKAIDVNMNK---MPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIA 364
Query: 359 II-ECFNINNIQYEREGDYLMIKGVPGGKGLGCSTGHMVQSKFGYRVAMSFLVMGLASEY 417
I E + E DY +I K T +R+AM+F + +
Sbjct: 365 ICTELRKLGATVEEGP-DYCIITPPKKLKPAEIDTYD------DHRMAMAF-SLAACGDV 416
Query: 418 SVVVDDYTMISTIFPDFINLMKTL 441
V ++D FP + ++++++
Sbjct: 417 PVTINDPGCTRKTFPTYFDVLESI 440
>gnl|CDD|183342 PRK11860, PRK11860, bifunctional 3-phosphoshikimate
1-carboxyvinyltransferase/cytidine monophosphate kinase;
Provisional.
Length = 661
Score = 62.8 bits (153), Expect = 2e-10
Identities = 78/356 (21%), Positives = 153/356 (42%), Gaps = 52/356 (14%)
Query: 17 GLQGTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKDRE 76
GT+ +PG +S+S+ ++L ++ G T +R +L+SDD + + LG +
Sbjct: 14 SAGGTVRLPGSKSISNRVLLLAALSEGTTTVRDLLDSDDTRVMLDALRALGCGVEQLGDT 73
Query: 77 WIVQGVGNGCLLSPEYPLDFKGFDMGYGLMMGVVGVY-------------DFQTFFKGRA 123
+ + G+G G P D L +G G +++ G
Sbjct: 74 YRITGLG-GQF--PVKQAD---------LFLGNAGTAMRPLTAALALLGGEYE--LSGVP 119
Query: 124 EILQPTIESLLAPLYQMGVQVK-LPEDKRLPLVLHGP--RTPNPIVYKSPMDSVQSKSVV 180
+ + I L+ L Q+G + L + PL + R PI + + S Q + +
Sbjct: 120 RMHERPIGDLVDALRQLGCDIDYLGNEGFPPLRIGPAPLRLDAPIRVRGDVSS-QFLTAL 178
Query: 181 LLAGLNTPGITEVIEPVK---TQDHMEI---ILKEFGVDLLIKSDTIEDYSVRIEGRKRI 234
L+A IE V ++ ++EI +L FG+ ++ + + +++ R R
Sbjct: 179 LMALPLVARRDITIEVVGELISKPYIEITLNLLARFGIA--VQREGWQRFTIPAGSRYRS 236
Query: 235 SGCNLKIPGDSSIAFFPLAAALLIPGSDIKLLNVLTNPLR--VGIIDILREMGADITLSN 292
G + + GD+S A + +AA + G+ +++ V + ++ + + R MGA
Sbjct: 237 PG-EIHVEGDASSASYFIAAGAIAGGAPVRIEGVGRDSIQGDIRFAEAARAMGA------ 289
Query: 293 SRIESGENIADIRVRFSKIKGITISDNRLRSIVDEYPILLVISAFAEGETIIKGLA 348
++ SG N ++R +K I + N I D L V++ +A+G T ++ +A
Sbjct: 290 -QVTSGPNWLEVRRGAWPLKAIDLDCNH---IPDAAMTLAVMALYADGTTTLRNIA 341
Score = 40.0 bits (94), Expect = 0.001
Identities = 41/144 (28%), Positives = 60/144 (41%), Gaps = 37/144 (25%)
Query: 170 PMDSVQ-------SKS----VVLLAGLNTPGITEVIEPVKTQD--HMEIILKEFGVDLLI 216
P+ S SKS V+LLA L + G T V + + + D M L+ G
Sbjct: 11 PLLSAGGTVRLPGSKSISNRVLLLAAL-SEGTTTVRDLLDSDDTRVMLDALRALGC---- 65
Query: 217 KSDTIEDYSVRIEGRK-RISGCNLKIP--------GDSSIAFFPLAAALLIPGSDIKLLN 267
V G RI+G + P G++ A PL AAL + G + +L
Sbjct: 66 --------GVEQLGDTYRITGLGGQFPVKQADLFLGNAGTAMRPLTAALALLGGEYELSG 117
Query: 268 VLTNPLR-VG-IIDILREMGADIT 289
V R +G ++D LR++G DI
Sbjct: 118 VPRMHERPIGDLVDALRQLGCDID 141
>gnl|CDD|181804 PRK09369, PRK09369, UDP-N-acetylglucosamine
1-carboxyvinyltransferase; Validated.
Length = 417
Score = 43.5 bits (104), Expect = 1e-04
Identities = 37/137 (27%), Positives = 55/137 (40%), Gaps = 34/137 (24%)
Query: 218 SDTIEDYSVRIEGRKRISGCNLKIPGDS-SIAFFPLAAALLIPGSDIKLLNVLTNPLRVG 276
+DTI IEG +R+ G + D F +AAA I G D+ + L
Sbjct: 212 TDTI-----TIEGVERLHGAEHTVIPDRIEAGTFLVAAA--ITGGDVTIRGARPEHLEA- 263
Query: 277 IIDILREMGADITLSNSRIESGENIADIRVRFS-KIKGITISDNRLRSIVDEYP------ 329
++ LRE GA+ IE GE+ IRV ++K + I YP
Sbjct: 264 VLAKLREAGAE-------IEEGED--GIRVDMPGRLKAVDIKT-------APYPGFPTDM 307
Query: 330 --ILLVISAFAEGETII 344
+ + AEG ++I
Sbjct: 308 QAQFMALLTQAEGTSVI 324
Score = 34.6 bits (81), Expect = 0.056
Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 52/168 (30%)
Query: 200 QDHMEIILKEF---GVDLLIKSDTIEDYSVRIEGRKRISGCNLKI---PGDSSIAFFP-- 251
+H+E +L + G ++ + +R++ R+ ++K PG FP
Sbjct: 258 PEHLEAVLAKLREAGAEI-----EEGEDGIRVDMPGRLKAVDIKTAPYPG------FPTD 306
Query: 252 -----LAAALLIPGSDIKLLNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIR- 305
+A G+ + + N R + L MGADI + + A +R
Sbjct: 307 MQAQFMALLTQAEGTSVITETIFEN--RFMHVPELIRMGADIEVDG-------HTAVVRG 357
Query: 306 VRFSKIKG--ITISDNRLR---SIVDEYPILLVISAF-AEGETIIKGL 347
V K+ G + +D LR S LV++ AEG TI+ +
Sbjct: 358 V--EKLSGAPVMATD--LRASAS--------LVLAGLVAEGTTIVDRI 393
>gnl|CDD|162190 TIGR01072, murA, UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
Length = 416
Score = 42.6 bits (101), Expect = 2e-04
Identities = 58/251 (23%), Positives = 107/251 (42%), Gaps = 45/251 (17%)
Query: 207 LKEFGVDLL-IKSDTIEDYSVRIEGRKRISGCNLKIPGDS-SIAFFPLAAALLIPGSDIK 264
L + G + S+TI IEG +++ G + D F +AAA I G +I
Sbjct: 199 LNKMGAKITGAGSNTIT-----IEGVEKLHGTEHSVIPDRIEAGTFLVAAA--ITGGEIT 251
Query: 265 LLNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRVRFSKIKGITISDNRLRSI 324
+ NV + LR ++ LRE+GA++ + + I + +R ++K + I
Sbjct: 252 IKNVRPDHLRA-VLAKLREIGAEVEVDENGIR-------VDMRQKRLKAVDIETL----- 298
Query: 325 VDEYP--------ILLVISAFAEGETIIKGLAEVMTSKQFSGIIECFNIN-NIQYEREGD 375
YP + + + AEG ++I E + +F + E + NI+ EG+
Sbjct: 299 --PYPGFPTDLQAQFMALLSQAEGTSVIT---ETVFENRFMHVDELIRMGANIKL--EGN 351
Query: 376 YLMIKGVPGGKGLGCSTGHMVQSKFGYRVAMSFLVMGLASEYSVVVDDYTMISTIFPDFI 435
+I GV G ++ + R + ++ GL +E +V + + + D
Sbjct: 352 TAVIHGVEQLSG-----AEVMATDL--RAGAALVLAGLVAEGETIVHNVYHLDRGYEDLE 404
Query: 436 NLMKTLGARIE 446
++ LGA+IE
Sbjct: 405 EKLRALGAKIE 415
Score = 31.0 bits (71), Expect = 0.69
Identities = 39/179 (21%), Positives = 69/179 (38%), Gaps = 60/179 (33%)
Query: 193 VIEPVKTQDHMEII---LKEFGVDLLIKSDTIEDYSVRIEGR-KRISGCNLKI---PGDS 245
I+ V+ DH+ + L+E G ++ +++ +R++ R KR+ +++ PG
Sbjct: 251 TIKNVR-PDHLRAVLAKLREIGAEV-----EVDENGIRVDMRQKRLKAVDIETLPYPG-- 302
Query: 246 SIAFFP-------LAAALLIPGSDIKLLNVLTNPLRVGIIDILREMGADITLS-NSRIES 297
FP +A G+ + V N R +D L MGA+I L N+ +
Sbjct: 303 ----FPTDLQAQFMALLSQAEGTSVITETVFEN--RFMHVDELIRMGANIKLEGNTAVIH 356
Query: 298 GEN--------IADIRVRFSKIKGITISDNRLRSIVDEYPILLVISAF-AEGETIIKGL 347
G D+R + LV++ AEGETI+ +
Sbjct: 357 GVEQLSGAEVMATDLRAGAA----------------------LVLAGLVAEGETIVHNV 393
Score = 29.1 bits (66), Expect = 2.4
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 227 RIEGRKRISGCNLKIPGDSSIAFFPLAAALLIPGSDIKLLNVLT-NPLRVGIIDILREMG 285
+EG K +SG + I G + A P+ AA L+ + L NV + ++ +D+LR +G
Sbjct: 5 VVEGGKPLSGE-VTISG-AKNAALPIIAATLLTDEPVTLTNVPDLSDVKT-TLDLLRNLG 61
Query: 286 ADITLSNSRIE 296
A + N+ +E
Sbjct: 62 ARVERDNNTLE 72
>gnl|CDD|183779 PRK12830, PRK12830, UDP-N-acetylglucosamine
1-carboxyvinyltransferase; Reviewed.
Length = 417
Score = 36.4 bits (85), Expect = 0.016
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 226 VRIEGRKRISGCNLKIPGDSSIA--FFPLAAALLIPGSDIKLLNVLTNPLRVGIIDILRE 283
+RIEG + GC + D A + LAAA G + + NV+ L I L E
Sbjct: 213 IRIEGVDELHGCRHTVIPDRIEAGTYMILAAAC---GGGVTINNVIPEHLE-SFIAKLEE 268
Query: 284 MGADITLSNS--RIESGENIADIRVR 307
MG + ++ +E N+ + ++
Sbjct: 269 MGVRVEVNEDSIFVEKQGNLKAVDIK 294
Score = 33.7 bits (78), Expect = 0.11
Identities = 38/154 (24%), Positives = 63/154 (40%), Gaps = 28/154 (18%)
Query: 202 HMEII---LKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKI---PGDSSIAFFPLAAA 255
H+E L+E GV + + + S+ +E + + ++K PG ++ PL
Sbjct: 258 HLESFIAKLEEMGVRV-----EVNEDSIFVEKQGNLKAVDIKTLPYPGFATDLQQPLTPL 312
Query: 256 LLI-PGSDIKLLNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRVRFSKIKGI 314
LL G + + R +D L+ MGA+I ++E I SK+ G
Sbjct: 313 LLKANGRSVVTDTIY--EKRFKHVDELKRMGANI-----KVEGRSAIIT---GPSKLTGA 362
Query: 315 TISDNRLRSIVDEYPILLVISAF-AEGETIIKGL 347
+ LR+ LVI+ AEG T I +
Sbjct: 363 KVKATDLRAGA-----ALVIAGLMAEGVTEITNI 391
Score = 27.1 bits (61), Expect = 9.5
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 26/81 (32%)
Query: 228 IEGRKRISGCNLKIPG--DSSIAFFPLAAALL---------IPG-SDIKLLNVLTNPLRV 275
I G K +SG + I G +S++A P AA+L +P SD+ L
Sbjct: 6 INGGKPLSG-EVTISGAKNSAVALIP--AAILADGPVTLDGVPDISDVHSL--------- 53
Query: 276 GIIDILREMGADITLSNSRIE 296
+DIL E+G + +E
Sbjct: 54 --VDILEELGGKVKRDGDTLE 72
>gnl|CDD|181349 PRK08278, PRK08278, short chain dehydrogenase; Provisional.
Length = 273
Score = 28.3 bits (64), Expect = 3.6
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 386 KGLGCSTGHMVQSKFGYRVAMSFLVMGLASEY 417
K T + + +K+G MS +GLA E+
Sbjct: 156 KWFAPHTAYTM-AKYG----MSLCTLGLAEEF 182
>gnl|CDD|161938 TIGR00580, mfd, transcription-repair coupling factor (mfd). All
proteins in this family for which functions are known
are DNA-dependent ATPases that function in the process
of transcription-coupled DNA repair in which the repair
of the transcribed strand of actively transacribed genes
is repaired at a higher rate than the repair of
non-transcribed regions of the genome and than the
non-transcribed strand of the same gene. This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University). This family is
closely related to the RecG and UvrB families.
Length = 926
Score = 28.1 bits (63), Expect = 4.8
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 192 EVIEPVKTQDHM---EIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGC 237
E IE +K E E I D I D S+R+E KRI+
Sbjct: 832 EAIEELKGGKPPKLEEETDIELPYSAFIPDDYIADDSLRLEFYKRIASA 880
>gnl|CDD|150221 pfam09476, Pilus_CpaD, Pilus biogenesis CpaD protein (pilus_cpaD).
Proteins in this entry consist of a pilus biogenesis
protein, CpaD, from Caulobacter, and homologues in other
bacteria, including three in the root nodule bacterium
Bradyrhizobium japonicum. The molecular function of the
homologues is not known.
Length = 200
Score = 27.7 bits (62), Expect = 6.3
Identities = 6/38 (15%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 277 IIDILREMG---ADITLSNSRIESGENIADIRVRFSKI 311
+ +L G ++I++ IRV +++
Sbjct: 95 VRALLAAAGVPPSNISVRAYDAAGARAPGPIRVSYTRY 132
>gnl|CDD|178896 PRK00141, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 473
Score = 27.4 bits (61), Expect = 7.2
Identities = 9/58 (15%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Query: 275 VGIIDILREMGADITLSNSRIESGENIADIRVRFSKIKGITISDNRLRSIVDEYPILL 332
GI +L E+G D+ +++ + + + IS +D + +++
Sbjct: 28 RGIAAMLSELGCDVVVADDNETARHKLIE------VTGVADISTAEASDQLDSFSLVV 79
>gnl|CDD|185301 PRK15403, PRK15403, multidrug efflux system protein MdtM;
Provisional.
Length = 413
Score = 27.5 bits (61), Expect = 7.4
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 245 SSIAFFPLAAALLIPGSDIKLLNVLTNPLRVGIIDILREMGADITLS 291
++ FFP+A L++ L L P GII+++R+ AD++L+
Sbjct: 12 AATLFFPMA--LILYDFAAYLTTDLIQP---GIINVVRDFNADVSLA 53
>gnl|CDD|151693 pfam11251, DUF3050, Protein of unknown function (DUF3050). This
bacterial family of proteins has no known function.
Length = 232
Score = 27.2 bits (61), Expect = 8.7
Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 30/112 (26%)
Query: 279 DILREMGADITLSN---SRIESGENI------ADIRV---RFSKIKGITISDNRLRSIVD 326
D +RE+GAD + ++SG ++ AD+ RF + I + I
Sbjct: 87 DAMREVGADTSKIEAFLKLVQSGTSVFEALAQADLPEPAARFLRFTFELIESGKPHEIA- 145
Query: 327 EYPILLVISAFAEG-ETIIKGLAEVMTSKQFSGIIECFNINNIQYEREGDYL 377
+AF G E +I + F I++ NI Q YL
Sbjct: 146 --------AAFTFGREDLIPDM--------FRAILDELNIPETQLPTFRYYL 181
>gnl|CDD|151577 pfam11133, Phage_head_fibr, Head fiber protein. This head fiber
protein is also refereed to as Gp8.5. Gp8.5 is a
structural protein in phage. It is a dispensable head
protein.
Length = 277
Score = 27.3 bits (60), Expect = 8.7
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 214 LLIKSDTIEDYSVRIEGRKRI----SGCNLKIPGDSSIAFFPLAAALLIPGSDIKLLNVL 269
LL + + E + + I +L + + I+F+PLAA L+I SDI + +
Sbjct: 18 LLPEVEQEERIEISTARERTIPYYVDTTDLVVGDYTPISFYPLAAWLVIATSDIAIGDKF 77
Query: 270 T 270
T
Sbjct: 78 T 78
>gnl|CDD|179080 PRK00642, PRK00642, inorganic pyrophosphatase; Provisional.
Length = 205
Score = 27.3 bits (61), Expect = 8.8
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 22/66 (33%)
Query: 22 ICIPGDRSLSHFSIIL-----GG---IAAGET--QIRGVLESDDVLNTM----------- 60
IC+ +++++H +I+L GG I GE +I VLE D V +
Sbjct: 98 ICVLTEKNITHGNILLQARPIGGLRMIDGGEADDKIIAVLEDDLVYGEIKDISECPGTLL 157
Query: 61 -RMMHY 65
R+ HY
Sbjct: 158 DRLQHY 163
>gnl|CDD|178070 PLN02451, PLN02451, homoserine kinase.
Length = 370
Score = 27.1 bits (60), Expect = 8.8
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Query: 380 KGVPGGKGLGCSTGH------MVQSKFGYRVAMSFLVM-GLASEYSV 419
KG+P G GLG S V FG + LV+ GL SE V
Sbjct: 141 KGLPLGSGLGSSAASAAAAAVAVNELFGSPLGKDDLVLAGLESEAKV 187
>gnl|CDD|182264 PRK10141, PRK10141, DNA-binding transcriptional repressor ArsR;
Provisional.
Length = 117
Score = 27.1 bits (60), Expect = 9.3
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 263 IKLLNVLTNPLRVGIIDILREMG 285
++L +L++ R+GI+ +LRE G
Sbjct: 7 LQLFKILSDETRLGIVLLLRESG 29
>gnl|CDD|150533 pfam09873, DUF2100, Uncharacterized protein conserved in archaea
(DUF2100). This domain, found in various hypothetical
archaeal proteins, has no known function.
Length = 215
Score = 27.1 bits (60), Expect = 9.4
Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 197 VKTQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRI 234
Q H+ IL EFG + + +++ ++ I K++
Sbjct: 83 FAAQKHINKILAEFGFEFETERS-LDEGALYIVSNKKV 119
>gnl|CDD|171950 PRK13284, PRK13284, flagellar assembly protein FliW; Provisional.
Length = 145
Score = 27.0 bits (60), Expect = 9.5
Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 20/117 (17%)
Query: 178 SVVLLAGLNTPGIT-EVIEPVKTQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISG 236
+V L L+ P + + +P + EI L + V LL + + ED +V + +
Sbjct: 46 TVFWLQSLDDPDVAFSITDPERLGVRYEIELSDEEVALL-QLERPEDAAVLVIVYR---- 100
Query: 237 CNLKIPGDSSIAFFPLAAALLIPGSDIKLLNVLTNPL-RVGIIDILREMGADITLSN 292
A L A L P ++ NP+ R G+ ++ + DI L N
Sbjct: 101 -----DEAEHPALGGLRANLRAP--------LVINPISRRGLQKVITGLKPDILLRN 144
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.322 0.141 0.409
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,408,957
Number of extensions: 499025
Number of successful extensions: 1061
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1020
Number of HSP's successfully gapped: 39
Length of query: 449
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 353
Effective length of database: 3,920,105
Effective search space: 1383797065
Effective search space used: 1383797065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)