RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780458|ref|YP_003064871.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Candidatus Liberibacter asiaticus str. psy62] (449 letters) >2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A* Length = 445 Score = 297 bits (762), Expect = 2e-81 Identities = 222/434 (51%), Positives = 302/434 (69%), Gaps = 2/434 (0%) Query: 15 SCGLQGTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKD 74 S GL GT+ IPGD+S+SH S + GG+A+GET+I G+LE +DV+NT + M +GAR K+ Sbjct: 10 SSGLSGTVRIPGDKSISHRSFMFGGLASGETRITGLLEGEDVINTGKAMQAMGARIRKEG 69 Query: 75 REWIVQGVGNGCLLSPEYPLDFKGFDMGYGLMMGVVGVYDFQTFFKGRAEILQPTIESLL 134 WI+ GVGNG LL+PE PLDF G L MG+VGVYDF + F G A + + + +L Sbjct: 70 DTWIIDGVGNGGLLAPEAPLDFGNAATGCRLTMGLVGVYDFDSTFIGDASLTKRPMGRVL 129 Query: 135 APLYQMGVQVKLPEDKRLPLVLHGPRTPNPIVYKSPMDSVQSKSVVLLAGLNTPGITEVI 194 PL +MGVQVK + RLP+ L GP+TP PI Y+ PM S Q KS VLLAGLNTPGIT VI Sbjct: 130 NPLREMGVQVKSEDGDRLPVTLRGPKTPTPITYRVPMASAQVKSAVLLAGLNTPGITTVI 189 Query: 195 EPVKTQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDSSIAFFPLAA 254 EP+ T+DH E +L+ FG +L +++D ++R+EGR +++G + +PGD S FPL A Sbjct: 190 EPIMTRDHTEKMLQGFGANLTVETDADGVRTIRLEGRGKLTGQVIDVPGDPSSTAFPLVA 249 Query: 255 ALLIPGSDIKLLNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRVRFSKIKGI 314 ALL+PGSD+ +LNVL NP R G+I L+EMGADI + N R+ GE++AD+RVR S +KG+ Sbjct: 250 ALLVPGSDVTILNVLMNPTRTGLILTLQEMGADIEVINPRLAGGEDVADLRVRSSTLKGV 309 Query: 315 TISDNRLRSIVDEYPILLVISAFAEGETIIKGLAE--VMTSKQFSGIIECFNINNIQYER 372 T+ ++R S++DEYPIL V +AFAEG T++ GL E V S + S + +N + + Sbjct: 310 TVPEDRAPSMIDEYPILAVAAAFAEGATVMNGLEELRVKESDRLSAVANGLKLNGVDCDE 369 Query: 373 EGDYLMIKGVPGGKGLGCSTGHMVQSKFGYRVAMSFLVMGLASEYSVVVDDYTMISTIFP 432 L+++G P GKGLG ++G V + +R+AMSFLVMGL SE V VDD TMI+T FP Sbjct: 370 GETSLVVRGRPDGKGLGNASGAAVATHLDHRIAMSFLVMGLVSENPVTVDDATMIATSFP 429 Query: 433 DFINLMKTLGARIE 446 +F++LM LGA+IE Sbjct: 430 EFMDLMAGLGAKIE 443 >1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase; inside-OUT alpha/beta barrel; 1.55A {Enterobacter cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A* 1naw_A 1q3g_A* 1dlg_A 1ryw_A* 2z2c_A* 1uae_A* 3iss_A* 1a2n_A* 2rl1_A* 2rl2_A* Length = 419 Score = 222 bits (566), Expect = 2e-58 Identities = 88/436 (20%), Positives = 160/436 (36%), Gaps = 34/436 (7%) Query: 18 LQGTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKDREW 77 LQG + I G ++ + + +A +I+ V + D+ TM+++ LG + + W Sbjct: 12 LQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERDGSVW 71 Query: 78 IVQGVGNGCLLSPEYPLDFKGFDMGYGLMMGVVGVYDFQTFFKGRAEILQPTIESLLAPL 137 I N + + G ++ G Q G I ++ + L Sbjct: 72 IDASNVNNFSAPYDLVKTMRASIWALGPLVARFG--QGQVSLPGGCAIGARPVDLHIFGL 129 Query: 138 YQMGVQVKLPEDKRLPLVLHGPRTPNPIVYKSPMDSVQSKSVVLLAGLNTPGITEVIEPV 197 ++G ++KL E+ + ++G SV + ++ A G T + Sbjct: 130 EKLGAEIKL-EEGYVKASVNGR--LKGAHIVMDKVSVGATVTIMSAATLAEGTTIIENAA 186 Query: 198 K--TQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDSSIAFFPLAAA 255 + L G + + IEG +R+ G ++ D L AA Sbjct: 187 REPEIVDTANFLVALGAKI----SGQGTDRITIEGVERLGGGVYRVLPDRIETGTFLVAA 242 Query: 256 LLIPGSDIKLLNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRVRFSKIKGIT 315 I G I N + L ++ LRE GAD IE+GE+ + + + K +T Sbjct: 243 -AISGGKIVCRNAQPDTLD-AVLAKLREAGAD-------IETGEDWISLDMHGKRPKAVT 293 Query: 316 ISDNRLRSI-VDEYPILLVISAFAEGETIIKGLAEVMTSKQFSGIIECFNINNIQYEREG 374 + + D +++ AEG +I E + +F + E E E Sbjct: 294 VRTAPHPAFPTDMQAQFTLLNLVAEGTGVIT---ETIFENRFMHVPEL-IRMGAHAEIES 349 Query: 375 DYLMIKGVPGGKGLG-CSTGHMVQSKFGYRVAMSFLVMGLASEYSVVVDDYTMISTIFPD 433 + ++ GV G +T R + S ++ G +E + VVD I + Sbjct: 350 NTVICHGVEKLSGAQVMATDL--------RASASLVLAGCIAEGTTVVDRIYHIDRGYER 401 Query: 434 FINLMKTLGARIEWVD 449 + ++ LGA IE V Sbjct: 402 IEDKLRALGANIERVK 417 >3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB: 1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 1p88_A 1p89_A Length = 450 Score = 219 bits (560), Expect = 8e-58 Identities = 81/432 (18%), Positives = 168/432 (38%), Gaps = 27/432 (6%) Query: 18 LQGTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGA--RFTKKDR 75 + G + +PG +S+S+ +++L +A+G T++ +L+SDD+ + + + LG R + Sbjct: 36 ISGEVNLPGSKSVSNRALLLAALASGTTRLTNLLDSDDIRHMLNALTKLGVNYRLSADKT 95 Query: 76 EWIVQGVGNGCLLSPEYPLDFKGFDMGYGLMMGVVGVYDFQTFFKGRAEILQPTIESLLA 135 V+G+G + L + + + G + + I L+ Sbjct: 96 TCEVEGLGQAFHTTQPLELFLGNAGTAMRPLAAALCLGQGDYVLTGEPRMKERPIGHLVD 155 Query: 136 PLYQMGVQVK-LPEDKRLPLVLHGPRTPNPIVYKSPMDSVQSKSVVLLAGLNTPGITEV- 193 L Q G Q++ L ++ PL + G V S Q + L++ G + Sbjct: 156 ALRQAGAQIEYLEQENFPPLRIQGTGLQAGTVTIDGSISSQFLTAFLMSAPLAQGKVTIK 215 Query: 194 -IEPVKTQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDSSIAFFPL 252 + + ++ +++I L + + V G+ +S + GD+S A + L Sbjct: 216 IVGELVSKPYIDITLHIMEQFGVQVINHDYQEFVIPAGQSYVSPGQFLVEGDASSASYFL 275 Query: 253 AAALLIPGSD-IKLLNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRVRFSKI 311 AAA + G + + + + D L +MGA I + + R ++ Sbjct: 276 AAAAIKGGEVKVTGIGKNSIQGDIQFADALEKMGAQIEWGDDY---------VIARRGEL 326 Query: 312 KGITISDNRLRSIVDEYPILLVISAFAEGETIIKGLAE--VMTSKQFSGIIECFNINNIQ 369 + + N I D + + FA+G T I+ + V + + + + Sbjct: 327 NAVDLDFNH---IPDAAMTIATTALFAKGTTAIRNVYNWRVKETDRLAAMATELRKVGAT 383 Query: 370 YEREGDYLMIKGVPGGKGLGCSTGHMVQSKFGYRVAMSFLVMGLASEYSVVVDDYTMIST 429 E D+++I + + +R+AM F ++ L+ V ++D S Sbjct: 384 VEEGEDFIVITPPTKLI------HAAIDTYDDHRMAMCFSLVALSDT-PVTINDPKCTSK 436 Query: 430 IFPDFINLMKTL 441 FPD+ + L Sbjct: 437 TFPDYFDKFAQL 448 >1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A* Length = 427 Score = 207 bits (528), Expect = 4e-54 Identities = 132/428 (30%), Positives = 214/428 (50%), Gaps = 17/428 (3%) Query: 18 LQGTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKDREW 77 L G I +PGD+S+SH SII G +A GET++ +L +DVL+TM++ LG KD Sbjct: 10 LHGIIRVPGDKSISHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDKDGVI 69 Query: 78 IVQGVGNGCLLSPEYPLDFKGFDMGYGLMMGVVGVYDFQTFFKGRAEILQPTIESLLAPL 137 VQGVG L +P+ L+ L+ GV+ DF+ G + + ++ + PL Sbjct: 70 TVQGVGMAGLKAPQNALNMGNSGTSIRLISGVLAGADFEVEMFGDDSLSKRPMDRVTLPL 129 Query: 138 YQMGVQVK-LPEDKRLPLVLHGPRTPNPIVYKSPMDSVQSKSVVLLAGLNTPGITEVIEP 196 +MGV + E PL L G + PI Y+ P+ S Q KS ++ A L G + +IE Sbjct: 130 KKMGVSISGQTERDLPPLRLKGTKNLRPIHYELPIASAQVKSALMFAALQAKGESVIIEK 189 Query: 197 VKTQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDSSIAFFPLAAAL 256 T++H E +L++FG L + I ++G ++++G + +PGD S A F L A L Sbjct: 190 EYTRNHTEDMLQQFGGHLSVDGKKIT-----VQGPQKLTGQKVVVPGDISSAAFWLVAGL 244 Query: 257 LIPGSDIKLLNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRVRFSKIKGITI 316 + P S + L NV N R GIID++R MG + + I+ A + V S +KG I Sbjct: 245 IAPNSRLVLQNVGINETRTGIIDVIRAMGGKLE--ITEIDPVAKSATLIVESSDLKGTEI 302 Query: 317 SDNRLRSIVDEYPILLVISAFAEGETIIKGLAE--VMTSKQFSGIIECFNINNIQYEREG 374 + ++DE PI+ +++ A+G T+IK E V + + + + N Sbjct: 303 CGALIPRLIDELPIIALLATQAQGVTVIKDAEELKVKETDRIQVVADALNSMGADITPTA 362 Query: 375 DYLMIKGVPGGKGLGCSTGHMVQSKFGYRVAMSFLVMGL-ASEYSVVVDDYTMISTIFPD 433 D ++IKG G V + +R+ M + L ++ V +D I+T +P Sbjct: 363 DGMIIKGKSALH------GARVNTFGDHRIGMMTAIAALLVADGEVELDRAEAINTSYPS 416 Query: 434 FINLMKTL 441 F + +++L Sbjct: 417 FFDDLESL 424 >1g6s_A EPSP synthase; two-domain structure, inside-OUT alpha-beta barrel, transferase; HET: S3P GPJ; 1.50A {Escherichia coli} SCOP: d.68.2.2 PDB: 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 1q36_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1eps_A 1p88_A 1p89_A Length = 427 Score = 180 bits (457), Expect = 6e-46 Identities = 81/431 (18%), Positives = 160/431 (37%), Gaps = 26/431 (6%) Query: 18 LQGTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKDREW 77 + GTI +PG +S+S+ +++L +A G+T + +L+SDDV + + + LG +T Sbjct: 12 VDGTINLPGSKSVSNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTALGVSYTLSADRT 71 Query: 78 IVQGVGNGCLLSPEYP--LDFKGFDMGYGLMMGVVGVYDFQTFFKGRAEILQPTIESLLA 135 + +GNG L E L + + + G + + I L+ Sbjct: 72 RCEIIGNGGPLHAEGALELFLGNAGTAMRPLAAALCLGSNDIVLTGEPRMKERPIGHLVD 131 Query: 136 PLYQMGVQVKLPEDKRLPLVLHGPRTPNPIVYKSPMDSVQSKSVVLLAGLNTPGITEVI- 194 L G ++ E + P + V S Q + +L+ P T + Sbjct: 132 ALRLGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVSSQFLTALLMTAPLAPEDTVIRI 191 Query: 195 -EPVKTQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDSSIAFFPLA 253 + ++ +++I L + + V G+ S + GD+S A + LA Sbjct: 192 KGDLVSKPYIDITLNLMKTFGVEIENQHYQQFVVKGGQSYQSPGTYLVEGDASSASYFLA 251 Query: 254 AALLIPGSD-IKLLNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRVRFSKIK 312 AA + G+ + + + + D+L +MGA I + I Sbjct: 252 AAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDYISCTRGE----------- 300 Query: 313 GITISDNRLRSIVDEYPILLVISAFAEGETIIKGLAE--VMTSKQFSGIIECFNINNIQY 370 + D + I D + + FA+G T ++ + V + + + + Sbjct: 301 -LNAIDMDMNHIPDAAMTIATAALFAKGTTTLRNIYNWRVKETDRLFAMATELRKVGAEV 359 Query: 371 EREGDYLMIKGVPGGKGLGCSTGHMVQSKFGYRVAMSFLVMGLASEYSVVVDDYTMISTI 430 E DY+ I + + +R+AM F ++ L+ V + D + Sbjct: 360 EEGHDYIRITPPEKLN------FAEIATYNDHRMAMCFSLVALSDT-PVTILDPKCTAKT 412 Query: 431 FPDFINLMKTL 441 FPD+ + + Sbjct: 413 FPDYFEQLARI 423 >2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway, EPSP synthase, structural genomics; HET: S3P; 1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A* 2o0x_A* 2o0z_A* 2o15_A 2bjb_A Length = 450 Score = 136 bits (342), Expect = 1e-32 Identities = 78/435 (17%), Positives = 149/435 (34%), Gaps = 32/435 (7%) Query: 18 LQGTICIPGDRSLSHFSIILGGIAA----GETQIRGVLESDDVLNTMRMMHYLGARFTKK 73 ++ T+ +PG +S ++ +++L +AA G + I G L S D + + LG R Sbjct: 13 VRATVTVPGSKSQTNRALVLAALAAAQGRGASTISGALRSRDTELMLDALQTLGLRVDGV 72 Query: 74 DREWIVQGVGNGCLLSPEYPLDFKGFDMGYGLMMGVVGVYDFQTFFKGRAEILQPTIESL 133 E V G P +D + + + F G + I L Sbjct: 73 GSELTVSGRI---EPGPGARVDCGLAGTVLRFVPPLAALGSVPVTFDGDQQARGRPIAPL 129 Query: 134 LAPLYQMGVQVKLPEDKRLPLVLHGPRTPNP-IVYKSPMDSVQSKSVVLLAGLNTP-GIT 191 L L ++GV V + LP + G + V S Q S +LL+ + G+T Sbjct: 130 LDALRELGVAV---DGTGLPFRVRGNGSLAGGTVAIDASASSQFVSGLLLSAASFTDGLT 186 Query: 192 EVIEPVKTQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDSSIAFFP 251 I + + + ++ I D + A Sbjct: 187 VQHTGSSLPSAPHIAMTAAMLRQAGVDIDDSTPNRWQVRPGPVAARRWDIEPDLTNAVAF 246 Query: 252 LAAALLIPGS-DIKLLNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRVRFSK 310 L+AA++ G+ I ++ I+ ILR++ A + ++S +E Sbjct: 247 LSAAVVSGGTVRITGWPRVSVQPADHILAILRQLNAVVIHADSSLEVRGPTGYDGFDVDL 306 Query: 311 IKGITISDNRLRSIVDEYPILLVISAFAEGETIIKGLAE--VMTSKQFSGIIECFNINNI 368 + + L +++ + + G+A + + + + N Sbjct: 307 --------RAVGELTPSVAALAALASPGS-VSRLSGIAHLRGHETDRLAALSTEINRLGG 357 Query: 369 QYEREGDYLMIKGVPGGKGLGCSTGHMVQSKFGYRVAMSFLVMGLASEYSVVVDDYTMIS 428 D L+I P G+ ++ +R+AM+ ++GL V VDD + Sbjct: 358 TCRETPDGLVITATPLRPGI-------WRAYADHRMAMAGAIIGLRVA-GVEVDDIAATT 409 Query: 429 TIFPDFINLMKTLGA 443 P+F L + Sbjct: 410 KTLPEFPRLWAEMVG 424 >2yvw_A UDP-N-acetylglucosamine 1- carboxyvinyltransferase; peptidoglycan, structural genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus VF5} Length = 425 Score = 124 bits (311), Expect = 5e-29 Identities = 72/432 (16%), Positives = 138/432 (31%), Gaps = 31/432 (7%) Query: 18 LQGTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKDREW 77 L G + I G ++ + + + I V + DV NT+ ++ LGA + Sbjct: 21 LTGKVKISGAKNAALPIMFATILTEEPCTITNVPDLLDVRNTLLLLRELGAELEFLNNTV 80 Query: 78 IVQGVGNGCLLSPEYPLDFKGFDMGYGLMMGVVGVYDFQTFFKGRAEILQPTIESLLAPL 137 + N + + E + + G ++G G G I I+ L Sbjct: 81 FINPSINSFITNQEIIRRMRASVLSLGPLLGRFGRAVV--GLPGGCSIGARPIDQHLKFF 138 Query: 138 YQMGVQVKLPEDKRLPLVLHGPRTPNPIVYKSPMDSVQSKSVVLLAGLNTPGITEVIEPV 197 + G V++ E + + + + +++ LA + I E I Sbjct: 139 KEAGADVEVREGYVYVNLKE--KRRVHFKFDLVTVTGTENALLYLASVPEESILENIALE 196 Query: 198 KTQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDSSIAFFPLAAALL 257 + +LK+ +E S ++G + + G + D A + A+L Sbjct: 197 PEVMDLIEVLKKM-----GAHVKVEGRSAYVKGSENLKGFTHSVIPDRIEAGTFMVGAVL 251 Query: 258 IPGSDIKLLNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRVRFSKIKGITIS 317 G + + + V L N R+ E++ + G Sbjct: 252 TDGEILLENARINHLRAVVEKLKLIGGEVVEENGNLRVFRKESLRACDIETQVYPGFPT- 310 Query: 318 DNRLRSIVDEYPILLVISAFAEGETIIKGLAEVMTSKQFSGIIECFNINNIQYEREGDYL 377 D + + + A+G++ IK + G+ Sbjct: 311 --------DMQAQFMALLSVAKGKSRIKENIFEHRFHHAQELNRL----GANITVRGNTA 358 Query: 378 MIKGVPGGKGLGC-STGHMVQSKFGYRVAMSFLVMGLASEYSVVVDDYTMISTIFPDFIN 436 ++GV G ST R + S ++ GL ++ VV D + + Sbjct: 359 YVEGVERLYGSEVYSTDL--------RASASLVLAGLVAQGETVVRDVYHLDRGYEKLEE 410 Query: 437 LMKTLGARIEWV 448 +K LGA IE V Sbjct: 411 KLKKLGADIERV 422 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 79.2 bits (195), Expect = 2e-15 Identities = 74/401 (18%), Positives = 127/401 (31%), Gaps = 164/401 (40%) Query: 15 SCGLQGTICIPGDRSLSHFSI---ILG-----------GIAAGETQIRGVL------ESD 54 SC L G I L+H+ + +LG G A G +Q G++ E+D Sbjct: 237 SCPLIGVI------QLAHYVVTAKLLGFTPGELRSYLKG-ATGHSQ--GLVTAVAIAETD 287 Query: 55 D-------VLNTMRMMHYLGAR----FTKKD-REWIVQ-GVGNGCLLSPEYPLDFKGFDM 101 V + ++ ++G R + I++ + N P Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG-VPSP--------- 337 Query: 102 GYGLMMGVVGVYDFQTFFKGRAEILQPTIESLLAPLYQMGVQVKLPEDKRLPLVLH-GPR 160 M+ + + + + +Q + + LP K++ + L G + Sbjct: 338 ----MLSISNL--------TQEQ-VQDYVNKTNS---------HLPAGKQVEISLVNGAK 375 Query: 161 TPNPIVYKSPMDSVQSKSVVLLAGLNTPGITEVIEPVKTQDHMEIILKEFGVDLLIKSDT 220 N +V P +S L GLN L++ K+ + Sbjct: 376 --NLVVSGPP------QS---LYGLNL------------------TLRK------AKAPS 400 Query: 221 IEDYSVRIEGRKRISGCNLKIPGDSSIAFFPLAAA----LLIPGSDIKLLNVL------- 269 D S RI +R LK S F P+A+ LL+P SD + L Sbjct: 401 GLDQS-RIPFSERK----LKF----SNRFLPVASPFHSHLLVPASD-LINKDLVKNNVSF 450 Query: 270 -TNPLRVGIIDILREMGADITLSNSRIESGENIADIRVRFSKIKGITISDNRLRSIVDEY 328 +++ + D G+D+ R +I++ V I R V + Sbjct: 451 NAKDIQIPVYDT--FDGSDL-----R-VLSGSISERIVDC-----II------RLPVK-W 490 Query: 329 PILLVISA-----FAEGETIIKGLAEVMTSKQFSG----II 360 A F G GL V+T + G +I Sbjct: 491 ETTTQFKATHILDFGPGG--ASGLG-VLTHRNKDGTGVRVI 528 Score = 33.8 bits (77), Expect = 0.081 Identities = 63/370 (17%), Positives = 104/370 (28%), Gaps = 157/370 (42%) Query: 129 TIE-SLLAP--LYQMGVQVKLPED---KRLPLVLHGPRTPNPIVYKSPMDSVQSKSVVLL 182 ++E LL P + + Q++ + K LP T D + L+ Sbjct: 15 SLEHVLLVPTASFFIASQLQ---EQFNKILP-----EPTEGFAA-----DDEPTTPAELV 61 Query: 183 A---GLNTPGITEVIEPVKTQDHM----EIILKEFGVDLLIKSDTIEDYSVRIEGRKRIS 235 G ++ ++EP + L EF L +D I Sbjct: 62 GKFLGY----VSSLVEP-SKVGQFDQVLNLCLTEFENCYLEGND-IHA------------ 103 Query: 236 GCNLKIPGDSSIAFFPLAAALLIPGSDIKLLNVLTNPLRVGIIDILREMGADITLSNSRI 295 LAA LL +D L+ ++++ ++ Sbjct: 104 ----------------LAAKLL-QENDTTLVKTK---------ELIKNYITARIMAKRPF 137 Query: 296 ESGENIADIR-VRFSKIK--------GITISD--NRLRSIVDEYPILLVISAFAEGETII 344 + N A R V + G D LR + Y +L+ +I Sbjct: 138 DKKSNSALFRAVGEGNAQLVAIFGGQG-NTDDYFEELRDLYQTYHVLV--------GDLI 188 Query: 345 KGLAEVM---------TSKQFS-GIIECFNINN-IQYEREG----DYLMIKGVP------ 383 K AE + K F+ G NI ++ DYL+ +P Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQG----LNILEWLEN-PSNTPDKDYLL--SIPISCPLI 241 Query: 384 G----------GKGLGCS-----------TGH-----------MVQS--KFGY---RVAM 406 G K LG + TGH S F + R A+ Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF-FVSVRKAI 300 Query: 407 SFLV-MGLAS 415 + L +G+ Sbjct: 301 TVLFFIGVRC 310 Score = 30.7 bits (69), Expect = 0.80 Identities = 46/211 (21%), Positives = 72/211 (34%), Gaps = 70/211 (33%) Query: 277 IIDILREMGADITLSNSRIESGENIADIRVRFSKIKGITISDNRLRSIVDEYPILLVISA 336 I+DI+ ++T+ GE IR +S + TI D +L++ Sbjct: 1661 ILDIVINNPVNLTIHFG----GEKGKRIRENYSAMIFETIVDGKLKT------------- 1703 Query: 337 FAEGETIIKGLAEVMTSKQF---SGIIECFNINNIQYEREGDYLMIKGV---PGGKGL-- 388 E I K + E TS F G++ Q+ + LM K KGL Sbjct: 1704 ----EKIFKEINEHSTSYTFRSEKGLLSA-----TQFTQPALTLMEKAAFEDLKSKGLIP 1754 Query: 389 --GCSTGHMVQSKFGYRVAMSFL--VMGLASEYSVVV-----------------DDYTMI 427 GH G A++ L VM + S VV +Y MI Sbjct: 1755 ADATFAGH----SLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMI 1810 Query: 428 STIFPDFIN----------LMKTLGARIEWV 448 + I P + +++ +G R W+ Sbjct: 1811 A-INPGRVAASFSQEALQYVVERVGKRTGWL 1840 >1zt2_B DNA primase large subunit; heterodimeric complex, replication, transferase; HET: DNA; 3.33A {Sulfolobus solfataricus} SCOP: a.262.1.1 Length = 212 Score = 33.3 bits (76), Expect = 0.099 Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 2/73 (2%) Query: 279 DILREMGADITLSNSRIESGENIADIRVRFSKIK--GITISDNRLRSIVDEYPILLVISA 336 D L++ G ITL++ + S I + R K K V + L+ A Sbjct: 16 DELKKYGGGITLTDLLLNSTTLIDQAKDRIQKTKSGDELPHYVSYNEPVLVFYTTLLSLA 75 Query: 337 FAEGETIIKGLAE 349 +I+ A Sbjct: 76 ILNDVKLIRRYAY 88 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 29.6 bits (65), Expect = 1.3 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 7/30 (23%) Query: 232 KRISGCNLKIPGDSSIAFFPLAAALLIPGS 261 K++ +LK+ D S A AL I + Sbjct: 23 KKLQA-SLKLYADDS------APALAIKAT 45 >3gf8_A Putative polysaccharide binding proteins (DUF1812); NP_809975.1, structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Bacteroides thetaiotaomicron vpi-5482} Length = 296 Score = 29.1 bits (65), Expect = 2.3 Identities = 24/149 (16%), Positives = 45/149 (30%), Gaps = 18/149 (12%) Query: 191 TEVIEPVKTQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDSSIAFF 250 TE I ++ + + + + + DY I G + + D ++F Sbjct: 140 TETINLIRDTKIVRFGFQSYTGSWTL---DMNDYDYEIIESNGHLGHDNSLLDDDVLSFR 196 Query: 251 PLAAALLIPGSDIKLLNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRV---- 306 P D V N +R L + SG+ + DI + Sbjct: 197 PYYME----QKDPATAYVDMNTMR-------LMEDRKTRLVLTEKASGKRVFDINLIDYL 245 Query: 307 RFSKIKGITISDNRLRSIVDEYPILLVIS 335 + +G +S Y I+ +S Sbjct: 246 AMTNAEGKNLSTQEYLDRQSNYHIIFFLS 274 >2qt3_A N-isopropylammelide isopropyl amidohydrolase; N-isopropylammelide isopropylaminohydrolase ATZC, structural genomics, NYSGXRC, target 9364B; 2.24A {Pseudomonas SP} Length = 403 Score = 28.3 bits (61), Expect = 3.7 Identities = 6/28 (21%), Positives = 15/28 (53%) Query: 287 DITLSNSRIESGENIADIRVRFSKIKGI 314 D+ + N+ + +++ DI + +I I Sbjct: 6 DLIIRNAYLSEKDSVYDIGIVGDRIIKI 33 >1l6j_A Matrix metalloproteinase-9; twisted beta sheet flanked by helices, hydrolase; 2.50A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 Length = 425 Score = 28.4 bits (63), Expect = 3.7 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 14/92 (15%) Query: 67 GARFTKKDREW---IVQGVGNG---CLLSPEYPLDFK-GFDMGYGLMMGVVGVYDFQTFF 119 FT +E+ +G G+G C + + D K GF G + +V ++F Sbjct: 329 VFPFTFLGKEYSTCTSEGRGDGRLWCATTSNFDSDKKWGFCPDQGYSLFLVAAHEF---- 384 Query: 120 KGRAEILQ--PTIESLLAPLYQMGVQVKLPED 149 G A L E+L+ P+Y+ L +D Sbjct: 385 -GHALGLDHSSVPEALMYPMYRFTEGPPLHKD 415 >2qsr_A Transcription-repair coupling factor; structural genomics, PSI-2, protein structure initiative; 3.10A {Streptococcus pneumoniae R6} Length = 173 Score = 28.0 bits (62), Expect = 3.9 Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 3/43 (6%) Query: 196 PVKTQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCN 238 ++T+ + E+IL +D + I D +IE K+I + Sbjct: 2 SLRTKGNAELIL---QIDAYLPDTYISDQRHKIEIYKKIRQID 41 >1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3 Length = 130 Score = 27.6 bits (61), Expect = 5.9 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 3/37 (8%) Query: 52 ESDDVLNTMRMMHYLGARFTKKDREWIVQGVGNGCLL 88 E + VL + R+ + RF + +W +G+GN +L Sbjct: 5 EDEKVLYSQRVKLF---RFDAEVSQWKERGLGNLKIL 38 >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Length = 1054 Score = 27.0 bits (59), Expect = 8.7 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 10/61 (16%) Query: 28 RSLSHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKDREWIVQGVGNGCL 87 R L HF I + +L++ N +++H LG + K + W+ G GCL Sbjct: 171 RELGHFDFIF------VDDVDAILKASK--NVDKLLHLLGFHYDLKTKSWV--GEARGCL 220 Query: 88 L 88 + Sbjct: 221 M 221 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.322 0.141 0.409 Gapped Lambda K H 0.267 0.0545 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,876,306 Number of extensions: 188767 Number of successful extensions: 544 Number of sequences better than 10.0: 1 Number of HSP's gapped: 473 Number of HSP's successfully gapped: 31 Length of query: 449 Length of database: 5,693,230 Length adjustment: 95 Effective length of query: 354 Effective length of database: 3,390,050 Effective search space: 1200077700 Effective search space used: 1200077700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 58 (26.5 bits)