RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780458|ref|YP_003064871.1| 3-phosphoshikimate
1-carboxyvinyltransferase [Candidatus Liberibacter asiaticus str.
psy62]
         (449 letters)



>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta
           barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A*
           2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A*
          Length = 445

 Score =  297 bits (762), Expect = 2e-81
 Identities = 222/434 (51%), Positives = 302/434 (69%), Gaps = 2/434 (0%)

Query: 15  SCGLQGTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKD 74
           S GL GT+ IPGD+S+SH S + GG+A+GET+I G+LE +DV+NT + M  +GAR  K+ 
Sbjct: 10  SSGLSGTVRIPGDKSISHRSFMFGGLASGETRITGLLEGEDVINTGKAMQAMGARIRKEG 69

Query: 75  REWIVQGVGNGCLLSPEYPLDFKGFDMGYGLMMGVVGVYDFQTFFKGRAEILQPTIESLL 134
             WI+ GVGNG LL+PE PLDF     G  L MG+VGVYDF + F G A + +  +  +L
Sbjct: 70  DTWIIDGVGNGGLLAPEAPLDFGNAATGCRLTMGLVGVYDFDSTFIGDASLTKRPMGRVL 129

Query: 135 APLYQMGVQVKLPEDKRLPLVLHGPRTPNPIVYKSPMDSVQSKSVVLLAGLNTPGITEVI 194
            PL +MGVQVK  +  RLP+ L GP+TP PI Y+ PM S Q KS VLLAGLNTPGIT VI
Sbjct: 130 NPLREMGVQVKSEDGDRLPVTLRGPKTPTPITYRVPMASAQVKSAVLLAGLNTPGITTVI 189

Query: 195 EPVKTQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDSSIAFFPLAA 254
           EP+ T+DH E +L+ FG +L +++D     ++R+EGR +++G  + +PGD S   FPL A
Sbjct: 190 EPIMTRDHTEKMLQGFGANLTVETDADGVRTIRLEGRGKLTGQVIDVPGDPSSTAFPLVA 249

Query: 255 ALLIPGSDIKLLNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRVRFSKIKGI 314
           ALL+PGSD+ +LNVL NP R G+I  L+EMGADI + N R+  GE++AD+RVR S +KG+
Sbjct: 250 ALLVPGSDVTILNVLMNPTRTGLILTLQEMGADIEVINPRLAGGEDVADLRVRSSTLKGV 309

Query: 315 TISDNRLRSIVDEYPILLVISAFAEGETIIKGLAE--VMTSKQFSGIIECFNINNIQYER 372
           T+ ++R  S++DEYPIL V +AFAEG T++ GL E  V  S + S +     +N +  + 
Sbjct: 310 TVPEDRAPSMIDEYPILAVAAAFAEGATVMNGLEELRVKESDRLSAVANGLKLNGVDCDE 369

Query: 373 EGDYLMIKGVPGGKGLGCSTGHMVQSKFGYRVAMSFLVMGLASEYSVVVDDYTMISTIFP 432
               L+++G P GKGLG ++G  V +   +R+AMSFLVMGL SE  V VDD TMI+T FP
Sbjct: 370 GETSLVVRGRPDGKGLGNASGAAVATHLDHRIAMSFLVMGLVSENPVTVDDATMIATSFP 429

Query: 433 DFINLMKTLGARIE 446
           +F++LM  LGA+IE
Sbjct: 430 EFMDLMAGLGAKIE 443


>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase;
           inside-OUT alpha/beta barrel; 1.55A {Enterobacter
           cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A*
           1naw_A 1q3g_A* 1dlg_A 1ryw_A* 2z2c_A* 1uae_A* 3iss_A*
           1a2n_A* 2rl1_A* 2rl2_A*
          Length = 419

 Score =  222 bits (566), Expect = 2e-58
 Identities = 88/436 (20%), Positives = 160/436 (36%), Gaps = 34/436 (7%)

Query: 18  LQGTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKDREW 77
           LQG + I G ++ +   +    +A    +I+ V +  D+  TM+++  LG +  +    W
Sbjct: 12  LQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERDGSVW 71

Query: 78  IVQGVGNGCLLSPEYPLDFKGFDMGYGLMMGVVGVYDFQTFFKGRAEILQPTIESLLAPL 137
           I     N      +     +      G ++   G    Q    G   I    ++  +  L
Sbjct: 72  IDASNVNNFSAPYDLVKTMRASIWALGPLVARFG--QGQVSLPGGCAIGARPVDLHIFGL 129

Query: 138 YQMGVQVKLPEDKRLPLVLHGPRTPNPIVYKSPMDSVQSKSVVLLAGLNTPGITEVIEPV 197
            ++G ++KL E+  +   ++G              SV +   ++ A     G T +    
Sbjct: 130 EKLGAEIKL-EEGYVKASVNGR--LKGAHIVMDKVSVGATVTIMSAATLAEGTTIIENAA 186

Query: 198 K--TQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDSSIAFFPLAAA 255
           +          L   G  +           + IEG +R+ G   ++  D       L AA
Sbjct: 187 REPEIVDTANFLVALGAKI----SGQGTDRITIEGVERLGGGVYRVLPDRIETGTFLVAA 242

Query: 256 LLIPGSDIKLLNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRVRFSKIKGIT 315
             I G  I   N   + L   ++  LRE GAD       IE+GE+   + +   + K +T
Sbjct: 243 -AISGGKIVCRNAQPDTLD-AVLAKLREAGAD-------IETGEDWISLDMHGKRPKAVT 293

Query: 316 ISDNRLRSI-VDEYPILLVISAFAEGETIIKGLAEVMTSKQFSGIIECFNINNIQYEREG 374
           +      +   D      +++  AEG  +I    E +   +F  + E         E E 
Sbjct: 294 VRTAPHPAFPTDMQAQFTLLNLVAEGTGVIT---ETIFENRFMHVPEL-IRMGAHAEIES 349

Query: 375 DYLMIKGVPGGKGLG-CSTGHMVQSKFGYRVAMSFLVMGLASEYSVVVDDYTMISTIFPD 433
           + ++  GV    G    +T          R + S ++ G  +E + VVD    I   +  
Sbjct: 350 NTVICHGVEKLSGAQVMATDL--------RASASLVLAGCIAEGTTVVDRIYHIDRGYER 401

Query: 434 FINLMKTLGARIEWVD 449
             + ++ LGA IE V 
Sbjct: 402 IEDKLRALGANIERVK 417


>3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics,
           center for structural genomics of infec diseases, csgid;
           HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB:
           1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A*
           1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A*
           2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 1p88_A 1p89_A
          Length = 450

 Score =  219 bits (560), Expect = 8e-58
 Identities = 81/432 (18%), Positives = 168/432 (38%), Gaps = 27/432 (6%)

Query: 18  LQGTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGA--RFTKKDR 75
           + G + +PG +S+S+ +++L  +A+G T++  +L+SDD+ + +  +  LG   R +    
Sbjct: 36  ISGEVNLPGSKSVSNRALLLAALASGTTRLTNLLDSDDIRHMLNALTKLGVNYRLSADKT 95

Query: 76  EWIVQGVGNGCLLSPEYPLDFKGFDMGYGLMMGVVGVYDFQTFFKGRAEILQPTIESLLA 135
              V+G+G     +    L           +   + +        G   + +  I  L+ 
Sbjct: 96  TCEVEGLGQAFHTTQPLELFLGNAGTAMRPLAAALCLGQGDYVLTGEPRMKERPIGHLVD 155

Query: 136 PLYQMGVQVK-LPEDKRLPLVLHGPRTPNPIVYKSPMDSVQSKSVVLLAGLNTPGITEV- 193
            L Q G Q++ L ++   PL + G       V      S Q  +  L++     G   + 
Sbjct: 156 ALRQAGAQIEYLEQENFPPLRIQGTGLQAGTVTIDGSISSQFLTAFLMSAPLAQGKVTIK 215

Query: 194 -IEPVKTQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDSSIAFFPL 252
            +  + ++ +++I L       +   +      V   G+  +S     + GD+S A + L
Sbjct: 216 IVGELVSKPYIDITLHIMEQFGVQVINHDYQEFVIPAGQSYVSPGQFLVEGDASSASYFL 275

Query: 253 AAALLIPGSD-IKLLNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRVRFSKI 311
           AAA +  G   +  +   +    +   D L +MGA I   +           +  R  ++
Sbjct: 276 AAAAIKGGEVKVTGIGKNSIQGDIQFADALEKMGAQIEWGDDY---------VIARRGEL 326

Query: 312 KGITISDNRLRSIVDEYPILLVISAFAEGETIIKGLAE--VMTSKQFSGIIECFNINNIQ 369
             + +  N    I D    +   + FA+G T I+ +    V  + + + +          
Sbjct: 327 NAVDLDFNH---IPDAAMTIATTALFAKGTTAIRNVYNWRVKETDRLAAMATELRKVGAT 383

Query: 370 YEREGDYLMIKGVPGGKGLGCSTGHMVQSKFGYRVAMSFLVMGLASEYSVVVDDYTMIST 429
            E   D+++I                + +   +R+AM F ++ L+    V ++D    S 
Sbjct: 384 VEEGEDFIVITPPTKLI------HAAIDTYDDHRMAMCFSLVALSDT-PVTINDPKCTSK 436

Query: 430 IFPDFINLMKTL 441
            FPD+ +    L
Sbjct: 437 TFPDYFDKFAQL 448


>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway,
           EPSP synthase, glyphosate, PEP, transferase; HET: GPJ
           S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2
           PDB: 1rf5_A 1rf4_A*
          Length = 427

 Score =  207 bits (528), Expect = 4e-54
 Identities = 132/428 (30%), Positives = 214/428 (50%), Gaps = 17/428 (3%)

Query: 18  LQGTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKDREW 77
           L G I +PGD+S+SH SII G +A GET++  +L  +DVL+TM++   LG     KD   
Sbjct: 10  LHGIIRVPGDKSISHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDKDGVI 69

Query: 78  IVQGVGNGCLLSPEYPLDFKGFDMGYGLMMGVVGVYDFQTFFKGRAEILQPTIESLLAPL 137
            VQGVG   L +P+  L+         L+ GV+   DF+    G   + +  ++ +  PL
Sbjct: 70  TVQGVGMAGLKAPQNALNMGNSGTSIRLISGVLAGADFEVEMFGDDSLSKRPMDRVTLPL 129

Query: 138 YQMGVQVK-LPEDKRLPLVLHGPRTPNPIVYKSPMDSVQSKSVVLLAGLNTPGITEVIEP 196
            +MGV +    E    PL L G +   PI Y+ P+ S Q KS ++ A L   G + +IE 
Sbjct: 130 KKMGVSISGQTERDLPPLRLKGTKNLRPIHYELPIASAQVKSALMFAALQAKGESVIIEK 189

Query: 197 VKTQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDSSIAFFPLAAAL 256
             T++H E +L++FG  L +    I      ++G ++++G  + +PGD S A F L A L
Sbjct: 190 EYTRNHTEDMLQQFGGHLSVDGKKIT-----VQGPQKLTGQKVVVPGDISSAAFWLVAGL 244

Query: 257 LIPGSDIKLLNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRVRFSKIKGITI 316
           + P S + L NV  N  R GIID++R MG  +    + I+     A + V  S +KG  I
Sbjct: 245 IAPNSRLVLQNVGINETRTGIIDVIRAMGGKLE--ITEIDPVAKSATLIVESSDLKGTEI 302

Query: 317 SDNRLRSIVDEYPILLVISAFAEGETIIKGLAE--VMTSKQFSGIIECFNINNIQYEREG 374
               +  ++DE PI+ +++  A+G T+IK   E  V  + +   + +  N          
Sbjct: 303 CGALIPRLIDELPIIALLATQAQGVTVIKDAEELKVKETDRIQVVADALNSMGADITPTA 362

Query: 375 DYLMIKGVPGGKGLGCSTGHMVQSKFGYRVAMSFLVMGL-ASEYSVVVDDYTMISTIFPD 433
           D ++IKG           G  V +   +R+ M   +  L  ++  V +D    I+T +P 
Sbjct: 363 DGMIIKGKSALH------GARVNTFGDHRIGMMTAIAALLVADGEVELDRAEAINTSYPS 416

Query: 434 FINLMKTL 441
           F + +++L
Sbjct: 417 FFDDLESL 424


>1g6s_A EPSP synthase; two-domain structure, inside-OUT alpha-beta barrel,
           transferase; HET: S3P GPJ; 1.50A {Escherichia coli}
           SCOP: d.68.2.2 PDB: 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A*
           2aay_A* 2pq9_A* 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A*
           1q36_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1eps_A 1p88_A
           1p89_A
          Length = 427

 Score =  180 bits (457), Expect = 6e-46
 Identities = 81/431 (18%), Positives = 160/431 (37%), Gaps = 26/431 (6%)

Query: 18  LQGTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKDREW 77
           + GTI +PG +S+S+ +++L  +A G+T +  +L+SDDV + +  +  LG  +T      
Sbjct: 12  VDGTINLPGSKSVSNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTALGVSYTLSADRT 71

Query: 78  IVQGVGNGCLLSPEYP--LDFKGFDMGYGLMMGVVGVYDFQTFFKGRAEILQPTIESLLA 135
             + +GNG  L  E    L           +   + +        G   + +  I  L+ 
Sbjct: 72  RCEIIGNGGPLHAEGALELFLGNAGTAMRPLAAALCLGSNDIVLTGEPRMKERPIGHLVD 131

Query: 136 PLYQMGVQVKLPEDKRLPLVLHGPRTPNPIVYKSPMDSVQSKSVVLLAGLNTPGITEVI- 194
            L   G ++   E +  P +          V      S Q  + +L+     P  T +  
Sbjct: 132 ALRLGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVSSQFLTALLMTAPLAPEDTVIRI 191

Query: 195 -EPVKTQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDSSIAFFPLA 253
              + ++ +++I L       +   +      V   G+   S     + GD+S A + LA
Sbjct: 192 KGDLVSKPYIDITLNLMKTFGVEIENQHYQQFVVKGGQSYQSPGTYLVEGDASSASYFLA 251

Query: 254 AALLIPGSD-IKLLNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRVRFSKIK 312
           AA +  G+  +  +   +    +   D+L +MGA I   +  I                 
Sbjct: 252 AAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDYISCTRGE----------- 300

Query: 313 GITISDNRLRSIVDEYPILLVISAFAEGETIIKGLAE--VMTSKQFSGIIECFNINNIQY 370
            +   D  +  I D    +   + FA+G T ++ +    V  + +   +         + 
Sbjct: 301 -LNAIDMDMNHIPDAAMTIATAALFAKGTTTLRNIYNWRVKETDRLFAMATELRKVGAEV 359

Query: 371 EREGDYLMIKGVPGGKGLGCSTGHMVQSKFGYRVAMSFLVMGLASEYSVVVDDYTMISTI 430
           E   DY+ I                + +   +R+AM F ++ L+    V + D    +  
Sbjct: 360 EEGHDYIRITPPEKLN------FAEIATYNDHRMAMCFSLVALSDT-PVTILDPKCTAKT 412

Query: 431 FPDFINLMKTL 441
           FPD+   +  +
Sbjct: 413 FPDYFEQLARI 423


>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway,
           EPSP synthase, structural genomics; HET: S3P; 1.15A
           {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A*
           2o0x_A* 2o0z_A* 2o15_A 2bjb_A
          Length = 450

 Score =  136 bits (342), Expect = 1e-32
 Identities = 78/435 (17%), Positives = 149/435 (34%), Gaps = 32/435 (7%)

Query: 18  LQGTICIPGDRSLSHFSIILGGIAA----GETQIRGVLESDDVLNTMRMMHYLGARFTKK 73
           ++ T+ +PG +S ++ +++L  +AA    G + I G L S D    +  +  LG R    
Sbjct: 13  VRATVTVPGSKSQTNRALVLAALAAAQGRGASTISGALRSRDTELMLDALQTLGLRVDGV 72

Query: 74  DREWIVQGVGNGCLLSPEYPLDFKGFDMGYGLMMGVVGVYDFQTFFKGRAEILQPTIESL 133
             E  V G        P   +D          +  +  +      F G  +     I  L
Sbjct: 73  GSELTVSGRI---EPGPGARVDCGLAGTVLRFVPPLAALGSVPVTFDGDQQARGRPIAPL 129

Query: 134 LAPLYQMGVQVKLPEDKRLPLVLHGPRTPNP-IVYKSPMDSVQSKSVVLLAGLNTP-GIT 191
           L  L ++GV V   +   LP  + G  +     V      S Q  S +LL+  +   G+T
Sbjct: 130 LDALRELGVAV---DGTGLPFRVRGNGSLAGGTVAIDASASSQFVSGLLLSAASFTDGLT 186

Query: 192 EVIEPVKTQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDSSIAFFP 251
                        I +    +            +        ++     I  D + A   
Sbjct: 187 VQHTGSSLPSAPHIAMTAAMLRQAGVDIDDSTPNRWQVRPGPVAARRWDIEPDLTNAVAF 246

Query: 252 LAAALLIPGS-DIKLLNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRVRFSK 310
           L+AA++  G+  I     ++      I+ ILR++ A +  ++S +E              
Sbjct: 247 LSAAVVSGGTVRITGWPRVSVQPADHILAILRQLNAVVIHADSSLEVRGPTGYDGFDVDL 306

Query: 311 IKGITISDNRLRSIVDEYPILLVISAFAEGETIIKGLAE--VMTSKQFSGIIECFNINNI 368
                     +  +      L  +++     + + G+A      + + + +    N    
Sbjct: 307 --------RAVGELTPSVAALAALASPGS-VSRLSGIAHLRGHETDRLAALSTEINRLGG 357

Query: 369 QYEREGDYLMIKGVPGGKGLGCSTGHMVQSKFGYRVAMSFLVMGLASEYSVVVDDYTMIS 428
                 D L+I   P   G+        ++   +R+AM+  ++GL     V VDD    +
Sbjct: 358 TCRETPDGLVITATPLRPGI-------WRAYADHRMAMAGAIIGLRVA-GVEVDDIAATT 409

Query: 429 TIFPDFINLMKTLGA 443
              P+F  L   +  
Sbjct: 410 KTLPEFPRLWAEMVG 424


>2yvw_A UDP-N-acetylglucosamine 1- carboxyvinyltransferase; peptidoglycan,
           structural genomics, NPPSFA; HET: EPU; 1.81A {Aquifex
           aeolicus VF5}
          Length = 425

 Score =  124 bits (311), Expect = 5e-29
 Identities = 72/432 (16%), Positives = 138/432 (31%), Gaps = 31/432 (7%)

Query: 18  LQGTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKDREW 77
           L G + I G ++ +   +    +      I  V +  DV NT+ ++  LGA     +   
Sbjct: 21  LTGKVKISGAKNAALPIMFATILTEEPCTITNVPDLLDVRNTLLLLRELGAELEFLNNTV 80

Query: 78  IVQGVGNGCLLSPEYPLDFKGFDMGYGLMMGVVGVYDFQTFFKGRAEILQPTIESLLAPL 137
            +    N  + + E     +   +  G ++G  G         G   I    I+  L   
Sbjct: 81  FINPSINSFITNQEIIRRMRASVLSLGPLLGRFGRAVV--GLPGGCSIGARPIDQHLKFF 138

Query: 138 YQMGVQVKLPEDKRLPLVLHGPRTPNPIVYKSPMDSVQSKSVVLLAGLNTPGITEVIEPV 197
            + G  V++ E      +    +      +     +    +++ LA +    I E I   
Sbjct: 139 KEAGADVEVREGYVYVNLKE--KRRVHFKFDLVTVTGTENALLYLASVPEESILENIALE 196

Query: 198 KTQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDSSIAFFPLAAALL 257
                +  +LK+           +E  S  ++G + + G    +  D   A   +  A+L
Sbjct: 197 PEVMDLIEVLKKM-----GAHVKVEGRSAYVKGSENLKGFTHSVIPDRIEAGTFMVGAVL 251

Query: 258 IPGSDIKLLNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRVRFSKIKGITIS 317
             G  +     + +   V     L          N R+   E++    +      G    
Sbjct: 252 TDGEILLENARINHLRAVVEKLKLIGGEVVEENGNLRVFRKESLRACDIETQVYPGFPT- 310

Query: 318 DNRLRSIVDEYPILLVISAFAEGETIIKGLAEVMTSKQFSGIIECFNINNIQYEREGDYL 377
                   D     + + + A+G++ IK             +              G+  
Sbjct: 311 --------DMQAQFMALLSVAKGKSRIKENIFEHRFHHAQELNRL----GANITVRGNTA 358

Query: 378 MIKGVPGGKGLGC-STGHMVQSKFGYRVAMSFLVMGLASEYSVVVDDYTMISTIFPDFIN 436
            ++GV    G    ST          R + S ++ GL ++   VV D   +   +     
Sbjct: 359 YVEGVERLYGSEVYSTDL--------RASASLVLAGLVAQGETVVRDVYHLDRGYEKLEE 410

Query: 437 LMKTLGARIEWV 448
            +K LGA IE V
Sbjct: 411 KLKKLGADIERV 422


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 79.2 bits (195), Expect = 2e-15
 Identities = 74/401 (18%), Positives = 127/401 (31%), Gaps = 164/401 (40%)

Query: 15  SCGLQGTICIPGDRSLSHFSI---ILG-----------GIAAGETQIRGVL------ESD 54
           SC L G I       L+H+ +   +LG           G A G +Q  G++      E+D
Sbjct: 237 SCPLIGVI------QLAHYVVTAKLLGFTPGELRSYLKG-ATGHSQ--GLVTAVAIAETD 287

Query: 55  D-------VLNTMRMMHYLGAR----FTKKD-REWIVQ-GVGNGCLLSPEYPLDFKGFDM 101
                   V   + ++ ++G R    +        I++  + N     P           
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG-VPSP--------- 337

Query: 102 GYGLMMGVVGVYDFQTFFKGRAEILQPTIESLLAPLYQMGVQVKLPEDKRLPLVLH-GPR 160
               M+ +  +         + + +Q  +    +          LP  K++ + L  G +
Sbjct: 338 ----MLSISNL--------TQEQ-VQDYVNKTNS---------HLPAGKQVEISLVNGAK 375

Query: 161 TPNPIVYKSPMDSVQSKSVVLLAGLNTPGITEVIEPVKTQDHMEIILKEFGVDLLIKSDT 220
             N +V   P      +S   L GLN                    L++       K+ +
Sbjct: 376 --NLVVSGPP------QS---LYGLNL------------------TLRK------AKAPS 400

Query: 221 IEDYSVRIEGRKRISGCNLKIPGDSSIAFFPLAAA----LLIPGSDIKLLNVL------- 269
             D S RI   +R     LK     S  F P+A+     LL+P SD  +   L       
Sbjct: 401 GLDQS-RIPFSERK----LKF----SNRFLPVASPFHSHLLVPASD-LINKDLVKNNVSF 450

Query: 270 -TNPLRVGIIDILREMGADITLSNSRIESGENIADIRVRFSKIKGITISDNRLRSIVDEY 328
               +++ + D     G+D+     R     +I++  V       I       R  V  +
Sbjct: 451 NAKDIQIPVYDT--FDGSDL-----R-VLSGSISERIVDC-----II------RLPVK-W 490

Query: 329 PILLVISA-----FAEGETIIKGLAEVMTSKQFSG----II 360
                  A     F  G     GL  V+T +   G    +I
Sbjct: 491 ETTTQFKATHILDFGPGG--ASGLG-VLTHRNKDGTGVRVI 528



 Score = 33.8 bits (77), Expect = 0.081
 Identities = 63/370 (17%), Positives = 104/370 (28%), Gaps = 157/370 (42%)

Query: 129 TIE-SLLAP--LYQMGVQVKLPED---KRLPLVLHGPRTPNPIVYKSPMDSVQSKSVVLL 182
           ++E  LL P   + +  Q++   +   K LP       T          D   +    L+
Sbjct: 15  SLEHVLLVPTASFFIASQLQ---EQFNKILP-----EPTEGFAA-----DDEPTTPAELV 61

Query: 183 A---GLNTPGITEVIEPVKTQDHM----EIILKEFGVDLLIKSDTIEDYSVRIEGRKRIS 235
               G     ++ ++EP            + L EF    L  +D I              
Sbjct: 62  GKFLGY----VSSLVEP-SKVGQFDQVLNLCLTEFENCYLEGND-IHA------------ 103

Query: 236 GCNLKIPGDSSIAFFPLAAALLIPGSDIKLLNVLTNPLRVGIIDILREMGADITLSNSRI 295
                           LAA LL   +D  L+            ++++       ++    
Sbjct: 104 ----------------LAAKLL-QENDTTLVKTK---------ELIKNYITARIMAKRPF 137

Query: 296 ESGENIADIR-VRFSKIK--------GITISD--NRLRSIVDEYPILLVISAFAEGETII 344
           +   N A  R V     +        G    D    LR +   Y +L+          +I
Sbjct: 138 DKKSNSALFRAVGEGNAQLVAIFGGQG-NTDDYFEELRDLYQTYHVLV--------GDLI 188

Query: 345 KGLAEVM---------TSKQFS-GIIECFNINN-IQYEREG----DYLMIKGVP------ 383
           K  AE +           K F+ G     NI   ++         DYL+   +P      
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQG----LNILEWLEN-PSNTPDKDYLL--SIPISCPLI 241

Query: 384 G----------GKGLGCS-----------TGH-----------MVQS--KFGY---RVAM 406
           G           K LG +           TGH              S   F +   R A+
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF-FVSVRKAI 300

Query: 407 SFLV-MGLAS 415
           + L  +G+  
Sbjct: 301 TVLFFIGVRC 310



 Score = 30.7 bits (69), Expect = 0.80
 Identities = 46/211 (21%), Positives = 72/211 (34%), Gaps = 70/211 (33%)

Query: 277  IIDILREMGADITLSNSRIESGENIADIRVRFSKIKGITISDNRLRSIVDEYPILLVISA 336
            I+DI+     ++T+       GE    IR  +S +   TI D +L++             
Sbjct: 1661 ILDIVINNPVNLTIHFG----GEKGKRIRENYSAMIFETIVDGKLKT------------- 1703

Query: 337  FAEGETIIKGLAEVMTSKQF---SGIIECFNINNIQYEREGDYLMIKGV---PGGKGL-- 388
                E I K + E  TS  F    G++        Q+ +    LM K        KGL  
Sbjct: 1704 ----EKIFKEINEHSTSYTFRSEKGLLSA-----TQFTQPALTLMEKAAFEDLKSKGLIP 1754

Query: 389  --GCSTGHMVQSKFGYRVAMSFL--VMGLASEYSVVV-----------------DDYTMI 427
                  GH      G   A++ L  VM + S   VV                   +Y MI
Sbjct: 1755 ADATFAGH----SLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMI 1810

Query: 428  STIFPDFIN----------LMKTLGARIEWV 448
            + I P  +           +++ +G R  W+
Sbjct: 1811 A-INPGRVAASFSQEALQYVVERVGKRTGWL 1840


>1zt2_B DNA primase large subunit; heterodimeric complex, replication,
           transferase; HET: DNA; 3.33A {Sulfolobus solfataricus}
           SCOP: a.262.1.1
          Length = 212

 Score = 33.3 bits (76), Expect = 0.099
 Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 2/73 (2%)

Query: 279 DILREMGADITLSNSRIESGENIADIRVRFSKIK--GITISDNRLRSIVDEYPILLVISA 336
           D L++ G  ITL++  + S   I   + R  K K              V  +   L+  A
Sbjct: 16  DELKKYGGGITLTDLLLNSTTLIDQAKDRIQKTKSGDELPHYVSYNEPVLVFYTTLLSLA 75

Query: 337 FAEGETIIKGLAE 349
                 +I+  A 
Sbjct: 76  ILNDVKLIRRYAY 88


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 29.6 bits (65), Expect = 1.3
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 7/30 (23%)

Query: 232 KRISGCNLKIPGDSSIAFFPLAAALLIPGS 261
           K++   +LK+  D S      A AL I  +
Sbjct: 23  KKLQA-SLKLYADDS------APALAIKAT 45


>3gf8_A Putative polysaccharide binding proteins (DUF1812); NP_809975.1,
           structural genomics, joint center for structural
           genomics; HET: MSE; 2.20A {Bacteroides thetaiotaomicron
           vpi-5482}
          Length = 296

 Score = 29.1 bits (65), Expect = 2.3
 Identities = 24/149 (16%), Positives = 45/149 (30%), Gaps = 18/149 (12%)

Query: 191 TEVIEPVKTQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDSSIAFF 250
           TE I  ++    +    + +     +    + DY   I       G +  +  D  ++F 
Sbjct: 140 TETINLIRDTKIVRFGFQSYTGSWTL---DMNDYDYEIIESNGHLGHDNSLLDDDVLSFR 196

Query: 251 PLAAALLIPGSDIKLLNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRV---- 306
           P          D     V  N +R               L  +   SG+ + DI +    
Sbjct: 197 PYYME----QKDPATAYVDMNTMR-------LMEDRKTRLVLTEKASGKRVFDINLIDYL 245

Query: 307 RFSKIKGITISDNRLRSIVDEYPILLVIS 335
             +  +G  +S          Y I+  +S
Sbjct: 246 AMTNAEGKNLSTQEYLDRQSNYHIIFFLS 274


>2qt3_A N-isopropylammelide isopropyl amidohydrolase; N-isopropylammelide
           isopropylaminohydrolase ATZC, structural genomics,
           NYSGXRC, target 9364B; 2.24A {Pseudomonas SP}
          Length = 403

 Score = 28.3 bits (61), Expect = 3.7
 Identities = 6/28 (21%), Positives = 15/28 (53%)

Query: 287 DITLSNSRIESGENIADIRVRFSKIKGI 314
           D+ + N+ +   +++ DI +   +I  I
Sbjct: 6   DLIIRNAYLSEKDSVYDIGIVGDRIIKI 33


>1l6j_A Matrix metalloproteinase-9; twisted beta sheet flanked by helices,
           hydrolase; 2.50A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11
           g.14.1.2 g.14.1.2 g.14.1.2
          Length = 425

 Score = 28.4 bits (63), Expect = 3.7
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 14/92 (15%)

Query: 67  GARFTKKDREW---IVQGVGNG---CLLSPEYPLDFK-GFDMGYGLMMGVVGVYDFQTFF 119
              FT   +E+     +G G+G   C  +  +  D K GF    G  + +V  ++F    
Sbjct: 329 VFPFTFLGKEYSTCTSEGRGDGRLWCATTSNFDSDKKWGFCPDQGYSLFLVAAHEF---- 384

Query: 120 KGRAEILQ--PTIESLLAPLYQMGVQVKLPED 149
            G A  L      E+L+ P+Y+      L +D
Sbjct: 385 -GHALGLDHSSVPEALMYPMYRFTEGPPLHKD 415


>2qsr_A Transcription-repair coupling factor; structural genomics, PSI-2,
           protein structure initiative; 3.10A {Streptococcus
           pneumoniae R6}
          Length = 173

 Score = 28.0 bits (62), Expect = 3.9
 Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 3/43 (6%)

Query: 196 PVKTQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCN 238
            ++T+ + E+IL    +D  +    I D   +IE  K+I   +
Sbjct: 2   SLRTKGNAELIL---QIDAYLPDTYISDQRHKIEIYKKIRQID 41


>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH)
          domain, phosphotyrosine-binding (PTB) domain, protein
          transport; NMR {Homo sapiens} SCOP: b.55.1.3
          Length = 130

 Score = 27.6 bits (61), Expect = 5.9
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 3/37 (8%)

Query: 52 ESDDVLNTMRMMHYLGARFTKKDREWIVQGVGNGCLL 88
          E + VL + R+  +   RF  +  +W  +G+GN  +L
Sbjct: 5  EDEKVLYSQRVKLF---RFDAEVSQWKERGLGNLKIL 38


>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
           helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
           c.37.1.16 e.10.1.1 PDB: 1gl9_B*
          Length = 1054

 Score = 27.0 bits (59), Expect = 8.7
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 10/61 (16%)

Query: 28  RSLSHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKDREWIVQGVGNGCL 87
           R L HF  I          +  +L++    N  +++H LG  +  K + W+  G   GCL
Sbjct: 171 RELGHFDFIF------VDDVDAILKASK--NVDKLLHLLGFHYDLKTKSWV--GEARGCL 220

Query: 88  L 88
           +
Sbjct: 221 M 221


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.322    0.141    0.409 

Gapped
Lambda     K      H
   0.267   0.0545    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,876,306
Number of extensions: 188767
Number of successful extensions: 544
Number of sequences better than 10.0: 1
Number of HSP's gapped: 473
Number of HSP's successfully gapped: 31
Length of query: 449
Length of database: 5,693,230
Length adjustment: 95
Effective length of query: 354
Effective length of database: 3,390,050
Effective search space: 1200077700
Effective search space used: 1200077700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.5 bits)