HHsearch alignment for GI: 254780459 and conserved domain: smart00531
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=95.47 E-value=0.0095 Score=37.72 Aligned_cols=29 Identities=14% Similarity=0.296 Sum_probs=20.5
Q ss_pred CCCCCCCCEEEECCC-------CCCCCCCCCCEECH
Q ss_conf 117888874421488-------87227789871532
Q gi|254780459|r 10 RTCPDTGKRFYDLNK-------QVIVSPYTQNSWPL 38 (129)
Q Consensus 10 R~C~~Cg~KFYDlnk-------~PiiCP~CG~e~~~ 38 (129)
T Consensus 100 Y~C~~C~~ryt~~eA~~l~~~~~~F~Cp~Cg~~L~~ 135 (147)
T smart00531 100 YKCPNCQSKYTFLEANQLLDMDGTFTCPRCGEELEE 135 (147)
T ss_pred EECCCCCCEECHHHHHHHCCCCCCEECCCCCCEEEE
T ss_conf 889999978629999884189983788999999887