HHsearch alignment for GI: 254780459 and conserved domain: smart00659
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=91.19 E-value=0.11 Score=31.20 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=23.6
Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCEE
Q ss_conf 117888874421488872277898715
Q gi|254780459|r 10 RTCPDTGKRFYDLNKQVIVSPYTQNSW 36 (129)
Q Consensus 10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~ 36 (129)
T Consensus 3 Y~Cg~C~~~~~i~~~d~irC~~CG~RI 29 (44)
T smart00659 3 YICGECGRENEIKSKDVVRCRECGYRI 29 (44)
T ss_pred EECCCCCCCCCCCCCCCEECCCCCCEE
T ss_conf 886768982313779966506487477