HHsearch alignment of GI: 254780459 and MMDB domain: 1pft_A_
>1pft_A (A:) TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus}
Probab=94.29 E-value=0.026 Score=34.65 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=28.6
Q ss_pred CCCCCCCCCCE--EEECCCCCCCCCCCCCEECHHHH
Q ss_conf 83117888874--42148887227789871532331
Q gi|254780459|r 8 TKRTCPDTGKR--FYDLNKQVIVSPYTQNSWPLAYF 41 (129)
Q Consensus 8 ~KR~C~~Cg~K--FYDlnk~PiiCP~CG~e~~~~~~ 41 (129)
.+++||.||.. -||.++--+||..||..+.-..+
T Consensus 4 ~~~~Cp~Cg~~~iv~D~~~Ge~vC~~CG~Vlee~~i 39 (50)
T 1pft_A 4 KQKVCPACESAELIYDPERGEIVCAKCGYVIEENII 39 (50)
T ss_dssp SCCSCTTTSCCCEEEETTTTEEEESSSCCBCCCCCC
T ss_pred CCCCCCCCCCCCEEEECCCCEEECCCCCCEECCCCC
T ss_conf 655592987982788788791851269859243424