HHsearch alignment of GI: 254780459 and MMDB domain: 2waq_P_

>2waq_P (P:) DNA-directed RNA polymerase RPO12 subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 3hkz_P
Probab=91.67  E-value=0.091  Score=31.32  Aligned_cols=27  Identities=22%  Similarity=0.277  Sum_probs=22.2

Q ss_pred             CCCCCCCCEE--EECCCC-CCCCCCCCCEE
Q ss_conf             1178888744--214888-72277898715
Q gi|254780459|r   10 RTCPDTGKRF--YDLNKQ-VIVSPYTQNSW   36 (129)
Q Consensus        10 R~C~~Cg~KF--YDlnk~-PiiCP~CG~e~   36 (129)
                      -.|..||+.|  -+|.+. -|-||+||.-+
T Consensus         4 Y~C~rCg~~~s~~el~~lp~irCPyCG~kI   33 (48)
T 2waq_P            4 YRCGKCWKTFTDEQLKVLPGVRCPYCGYKI   33 (48)
T ss_dssp             --CCCCSSSCCCCCSCCCSSSSCTTTCCCC
T ss_pred             EEECCCCCCCCHHHHHHCCCCCCCCCCCEE
T ss_conf             884025778068788457886446357289