HHsearch alignment of GI: 254780459 and MMDB domain: 2waq_P_
>2waq_P (P:) DNA-directed RNA polymerase RPO12 subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 3hkz_P
Probab=91.67 E-value=0.091 Score=31.32 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=22.2
Q ss_pred CCCCCCCCEE--EECCCC-CCCCCCCCCEE
Q ss_conf 1178888744--214888-72277898715
Q gi|254780459|r 10 RTCPDTGKRF--YDLNKQ-VIVSPYTQNSW 36 (129)
Q Consensus 10 R~C~~Cg~KF--YDlnk~-PiiCP~CG~e~ 36 (129)
-.|..||+.| -+|.+. -|-||+||.-+
T Consensus 4 Y~C~rCg~~~s~~el~~lp~irCPyCG~kI 33 (48)
T 2waq_P 4 YRCGKCWKTFTDEQLKVLPGVRCPYCGYKI 33 (48)
T ss_dssp --CCCCSSSCCCCCSCCCSSSSCTTTCCCC
T ss_pred EEECCCCCCCCHHHHHHCCCCCCCCCCCEE
T ss_conf 884025778068788457886446357289