Query gi|254780459|ref|YP_003064872.1| hypothetical protein CLIBASIA_01720 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 129 No_of_seqs 108 out of 275 Neff 6.5 Searched_HMMs 33803 Date Wed Jun 1 13:05:21 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780459.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2akl_A PHNA-like protein PA01 94.9 0.013 4E-07 36.4 2.0 31 11-41 29-59 (62) 2 >1pft_A TFIIB, PFTFIIBN; N-ter 94.3 0.026 7.7E-07 34.6 2.4 34 8-41 4-39 (50) 3 >3k1f_M Transcription initiati 94.0 0.024 7.1E-07 34.9 1.7 34 4-37 16-53 (57) 4 >1dl6_A Transcription factor I 93.8 0.044 1.3E-06 33.3 2.7 39 2-40 4-44 (58) 5 >3dl0_A Adenylate kinase; phos 92.7 0.073 2.2E-06 31.9 2.4 30 7-36 8-40 (45) 6 >2gmg_A Hypothetical protein P 92.1 0.072 2.1E-06 31.9 1.8 28 10-37 68-95 (105) 7 >3fb4_A Adenylate kinase; psyc 91.9 0.1 3.1E-06 31.0 2.4 30 7-36 10-42 (47) 8 >1nnq_A Rubrerythrin; structur 91.7 0.11 3.2E-06 30.8 2.4 27 7-35 71-97 (105) 9 >2waq_P DNA-directed RNA polym 91.7 0.091 2.7E-06 31.3 2.0 27 10-36 4-33 (48) 10 >2f9i_B Acetyl-coenzyme A carb 91.6 0.068 2E-06 32.1 1.2 31 7-37 28-60 (61) 11 >1aky_A Adenylate kinase; ATP: 91.4 0.12 3.6E-06 30.6 2.4 31 6-36 7-40 (62) 12 >2jz8_A Uncharacterized protei 91.3 0.12 3.6E-06 30.6 2.3 27 18-44 39-66 (87) 13 >1ak2_A Adenylate kinase isoen 91.1 0.14 4.1E-06 30.2 2.4 31 6-36 9-42 (48) 14 >1j8f_A SIRT2, sirtuin 2, isof 90.6 0.1 3E-06 31.0 1.4 32 9-40 27-67 (72) 15 >2rgx_A Adenylate kinase; tran 90.5 0.13 3.8E-06 30.4 1.8 27 6-36 9-35 (58) 16 >1vd4_A Transcription initiati 90.4 0.21 6.2E-06 29.1 2.8 29 10-38 15-51 (62) 17 >2ct7_A Ring finger protein 31 90.2 0.21 6.1E-06 29.1 2.6 30 8-37 24-54 (86) 18 >2bbw_A Adenylate kinase 4, AK 90.0 0.17 4.9E-06 29.7 2.0 31 6-36 8-41 (64) 19 >2kdx_A HYPA, hydrogenase/urea 89.7 0.23 6.9E-06 28.8 2.6 26 9-35 73-99 (119) 20 >2jvm_A Uncharacterized protei 89.5 0.18 5.2E-06 29.6 1.8 26 15-40 40-67 (80) 21 >3a43_A HYPD, hydrogenase nick 89.1 0.22 6.5E-06 29.0 2.1 27 9-35 70-116 (139) 22 >3flo_B DNA polymerase alpha c 86.7 0.41 1.2E-05 27.3 2.3 35 8-42 21-65 (206) 23 >2pk7_A Uncharacterized protei 86.5 0.33 9.6E-06 27.9 1.7 30 10-39 9-39 (69) 24 >2kpi_A Uncharacterized protei 86.2 0.37 1.1E-05 27.6 1.8 34 6-39 7-41 (56) 25 >2jny_A Uncharacterized BCR; s 86.1 0.53 1.6E-05 26.7 2.6 37 3-39 4-41 (67) 26 >1yc5_A NAD-dependent deacetyl 86.0 0.39 1.2E-05 27.5 1.9 32 9-40 4-42 (46) 27 >2jr6_A UPF0434 protein NMA087 85.6 0.41 1.2E-05 27.3 1.8 35 5-39 4-39 (68) 28 >2js4_A UPF0434 protein BB2007 85.6 0.44 1.3E-05 27.1 2.0 35 5-39 4-39 (70) 29 >2apo_B Ribosome biogenesis pr 85.0 0.58 1.7E-05 26.4 2.3 23 8-35 5-27 (60) 30 >2gnr_A Conserved hypothetical 83.9 0.52 1.5E-05 26.7 1.7 23 10-35 48-70 (145) 31 >1twf_L ABC10-alpha, DNA-direc 83.6 0.95 2.8E-05 25.1 2.9 32 5-36 24-55 (70) 32 >2hf1_A Tetraacyldisaccharide- 82.4 0.66 1.9E-05 26.1 1.7 30 10-39 9-39 (68) 33 >1ma3_A SIR2-AF2, transcriptio 82.1 0.64 1.9E-05 26.1 1.6 31 9-39 6-44 (50) 34 >2aus_D NOP10, ribosome biogen 81.0 1 3E-05 24.9 2.3 22 9-35 5-26 (60) 35 >3glr_A NAD-dependent deacetyl 80.8 0.62 1.8E-05 26.2 1.1 33 9-41 6-45 (55) 36 >3f2b_A DNA-directed DNA polym 80.1 0.99 2.9E-05 25.0 2.0 25 10-36 7-41 (54) 37 >1vfy_A Phosphatidylinositol-3 80.0 1.3 4E-05 24.2 2.7 34 2-36 4-37 (73) 38 >2zze_A Alanyl-tRNA synthetase 78.7 1.2 3.5E-05 24.5 2.0 30 5-34 12-44 (266) 39 >3h0g_L DNA-directed RNA polym 78.4 1.8 5.4E-05 23.4 2.9 32 5-36 17-48 (63) 40 >1h7b_A Anaerobic ribonucleoti 78.0 0.54 1.6E-05 26.6 0.1 27 10-36 491-518 (555) 41 >2jrr_A Uncharacterized protei 77.7 0.91 2.7E-05 25.2 1.2 23 17-39 29-53 (67) 42 >1lko_A Rubrerythrin all-iron( 77.7 1.1 3.3E-05 24.7 1.7 27 8-35 6-32 (43) 43 >2j6a_A Protein TRM112; transl 77.0 0.84 2.5E-05 25.4 0.9 12 27-38 110-121 (141) 44 >2ztg_A Alanyl-tRNA synthetase 76.1 1.5 4.4E-05 23.9 2.0 29 5-33 15-46 (260) 45 >2kn9_A Rubredoxin; metallopro 75.7 1.7 5.1E-05 23.5 2.2 28 8-35 26-69 (81) 46 >1q14_A HST2 protein; histone 75.3 1.6 4.7E-05 23.7 1.9 32 9-40 6-47 (52) 47 >2k4x_A 30S ribosomal protein 75.3 1.8 5.2E-05 23.4 2.1 29 8-36 17-46 (55) 48 >2jmo_A Parkin; IBR, E3 ligase 75.2 2.1 6.3E-05 23.0 2.5 29 8-36 24-60 (80) 49 >2csz_A Synaptotagmin-like pro 74.5 1.6 4.6E-05 23.8 1.7 31 7-37 23-53 (76) 50 >1twf_B DNA-directed RNA polym 74.2 1.7 5.1E-05 23.5 1.9 26 10-35 7-34 (70) 51 >2k5r_A Uncharacterized protei 73.8 0.97 2.9E-05 25.0 0.5 32 8-39 7-66 (97) 52 >2waq_B DNA-directed RNA polym 73.6 2.1 6.3E-05 22.9 2.2 26 10-35 7-33 (76) 53 >2j01_6 50S ribosomal protein 72.5 2.4 7.2E-05 22.6 2.3 35 1-35 1-46 (54) 54 >2j01_5 50S ribosomal protein 72.3 2.3 6.9E-05 22.7 2.2 21 10-34 31-51 (60) 55 >1dx8_A Rubredoxin; zinc-subst 72.0 2.3 6.8E-05 22.7 2.1 28 8-35 6-49 (70) 56 >1s24_A Rubredoxin 2; electron 71.8 2 5.9E-05 23.1 1.7 28 7-35 33-77 (87) 57 >3h0g_B DNA-directed RNA polym 71.8 2.2 6.6E-05 22.8 2.0 27 9-35 7-34 (68) 58 >2hjh_A NAD-dependent histone 71.5 0.77 2.3E-05 25.6 -0.4 32 9-40 6-44 (84) 59 >1x4u_A Zinc finger, FYVE doma 70.9 3.1 9.3E-05 21.9 2.6 35 2-37 4-41 (84) 60 >2zjr_Z 50S ribosomal protein 70.6 2 6E-05 23.1 1.6 23 8-34 29-51 (60) 61 >2qiz_A Ubiquitin conjugation 70.3 1.9 5.6E-05 23.3 1.3 19 21-39 6-24 (75) 62 >4rxn_A Rubredoxin; electron t 68.8 2.9 8.7E-05 22.1 2.1 27 8-35 2-45 (54) 63 >3ir9_A Peptide chain release 68.7 2.1 6.2E-05 23.0 1.3 29 9-37 7-43 (50) 64 >1m2k_A Silent information reg 68.0 3.5 0.0001 21.6 2.3 30 10-39 122-155 (249) 65 >1yk4_A Rubredoxin, RD; electr 67.1 3.3 9.9E-05 21.7 2.1 26 9-35 2-44 (52) 66 >1e8j_A Rubredoxin; iron-sulfu 66.7 3.9 0.00012 21.3 2.3 28 8-35 2-45 (52) 67 >2v3b_B Rubredoxin 2, rubredox 66.4 3.3 9.7E-05 21.8 1.9 27 8-35 2-45 (55) 68 >2b4y_A NAD-dependent deacetyl 66.0 3 8.8E-05 22.1 1.6 32 9-40 6-63 (68) 69 >2dkt_A Ring finger and CHY zi 65.9 3.3 9.7E-05 21.8 1.8 14 20-33 92-105 (112) 70 >1dt9_A ERF1, protein (eukaryo 65.4 2.4 7E-05 22.7 1.0 31 7-37 96-133 (203) 71 >2yw8_A RUN and FYVE domain-co 64.9 4.3 0.00013 21.1 2.2 29 8-37 18-46 (82) 72 >2dlk_A Novel protein; ZF-C2H2 64.4 4 0.00012 21.3 2.0 24 13-36 10-44 (45) 73 >1u5k_A Hypothetical protein; 62.3 5.3 0.00016 20.5 2.3 29 10-38 69-100 (162) 74 >2vl6_A SSO MCM N-TER, minichr 61.8 4 0.00012 21.3 1.6 26 10-35 31-66 (157) 75 >3gmt_A Adenylate kinase; ssgc 61.7 4.3 0.00013 21.1 1.8 31 6-36 9-42 (81) 76 >1z60_A TFIIH basal transcript 61.6 3.1 9E-05 22.0 1.0 31 5-37 11-41 (59) 77 >2k5c_A Uncharacterized protei 61.4 3.4 0.0001 21.7 1.2 20 22-41 47-66 (95) 78 >1yui_A GAGA-factor; complex ( 61.0 3.3 9.8E-05 21.8 1.1 17 22-38 20-36 (54) 79 >1wd2_A Ariadne-1 protein homo 61.0 3.7 0.00011 21.5 1.3 27 10-36 7-36 (60) 80 >6rxn_A Rubredoxin; electron t 60.2 5.4 0.00016 20.5 2.1 27 8-35 2-38 (45) 81 >1q1a_A HST2 protein; ternary 59.8 5 0.00015 20.7 1.8 34 7-40 30-73 (79) 82 >2yu4_A E3 SUMO-protein ligase 59.6 4.2 0.00012 21.2 1.4 31 7-41 5-35 (94) 83 >2f4m_A Peptide N-glycanase; g 59.5 6.4 0.00019 20.0 2.4 44 5-48 3-68 (68) 84 >3cc2_Z 50S ribosomal protein 59.2 5.1 0.00015 20.6 1.8 29 7-37 58-89 (116) 85 >2e72_A POGO transposable elem 58.1 3.9 0.00012 21.3 1.1 19 24-42 10-28 (49) 86 >2yuc_A TNF receptor-associate 57.9 6.7 0.0002 19.9 2.2 33 10-42 17-60 (76) 87 >1wfk_A Zinc finger, FYVE doma 57.7 7 0.00021 19.8 2.3 28 8-36 8-35 (88) 88 >1rqg_A Methionyl-tRNA synthet 57.6 7.6 0.00022 19.6 2.5 34 8-46 3-37 (40) 89 >1dgs_A DNA ligase; AMP comple 57.1 4 0.00012 21.3 1.0 13 25-37 87-99 (111) 90 >2adr_A ADR1; transcription re 56.1 5.4 0.00016 20.5 1.5 21 23-43 1-21 (34) 91 >3jyw_9 60S ribosomal protein 55.7 8.2 0.00024 19.4 2.4 29 7-37 24-55 (72) 92 >3h99_A Methionyl-tRNA synthet 55.6 5.7 0.00017 20.3 1.5 33 9-46 4-37 (41) 93 >1wgm_A Ubiquitin conjugation 55.2 5.2 0.00015 20.6 1.3 35 5-43 18-52 (98) 94 >3htk_C E3 SUMO-protein ligase 54.6 5.7 0.00017 20.3 1.4 31 8-42 45-75 (132) 95 >1z2q_A LM5-1; membrane protei 54.2 8 0.00024 19.4 2.1 33 3-36 12-47 (52) 96 >2ct2_A Tripartite motif prote 52.1 1.7 5.1E-05 23.5 -1.6 28 17-44 47-74 (88) 97 >3jwp_A Transcriptional regula 51.0 9.2 0.00027 19.1 2.0 32 9-40 6-47 (52) 98 >3be4_A Adenylate kinase; mala 50.9 9.5 0.00028 19.0 2.1 11 28-38 14-24 (37) 99 >3k35_A Mono-ADP-ribosyltransf 50.2 7.5 0.00022 19.6 1.5 31 9-39 138-184 (318) 100 >2epq_A POZ-, at HOOK-, and zi 50.1 7.7 0.00023 19.5 1.5 16 23-38 7-22 (45) 101 >2owo_A DNA ligase; protein/DN 49.4 7.1 0.00021 19.7 1.2 30 6-35 85-118 (160) 102 >2ctu_A Zinc finger protein 48 49.1 3.5 0.0001 21.7 -0.4 31 10-40 19-53 (73) 103 >3cng_A Nudix hydrolase; struc 48.8 9.2 0.00027 19.1 1.7 29 7-35 1-34 (37) 104 >2elp_A Zinc finger protein 40 48.2 9.1 0.00027 19.1 1.6 16 22-37 5-20 (37) 105 >2bay_A PRE-mRNA splicing fact 47.6 8.2 0.00024 19.4 1.3 33 7-43 1-33 (61) 106 >1exk_A DNAJ protein; extended 47.6 7.6 0.00023 19.5 1.2 31 4-34 6-36 (79) 107 >2elr_A Zinc finger protein 40 47.5 8 0.00024 19.4 1.2 14 7-20 7-20 (36) 108 >2jne_A Hypothetical protein Y 47.4 6.4 0.00019 20.0 0.8 29 5-37 43-72 (101) 109 >3gke_A DDMC; rieske cluster, 47.0 8.6 0.00025 19.2 1.3 33 9-41 46-80 (124) 110 >2dlq_A GLI-kruppel family mem 46.7 6.6 0.00019 20.0 0.7 13 24-36 2-14 (30) 111 >1z01_A 2-OXO-1,2-dihydroquino 46.7 9.3 0.00028 19.0 1.5 33 9-41 81-117 (174) 112 >2ct1_A Transcriptional repres 46.6 9.5 0.00028 19.0 1.5 19 23-41 12-30 (41) 113 >3f9v_A Minichromosome mainten 46.5 9.1 0.00027 19.1 1.4 26 10-35 31-66 (176) 114 >2elq_A Zinc finger protein 40 46.4 9.8 0.00029 18.9 1.6 19 23-41 6-24 (36) 115 3h0n_A Protein Of Unknown Func 45.7 7.7 0.00023 19.5 0.9 34 2-35 138-176 (188) 116 >2kfq_A FP1; protein, de novo 45.4 5.7 0.00017 20.3 0.2 11 28-38 4-14 (32) 117 >1jm7_B BARD1, BRCA1-associate 45.2 10 0.0003 18.8 1.5 32 9-44 22-53 (117) 118 >1llm_C Chimera of ZIF23-GCN4; 45.0 9.2 0.00027 19.0 1.3 16 25-40 2-17 (27) 119 >3h0g_I DNA-directed RNA polym 44.6 9.6 0.00028 19.0 1.3 12 23-34 16-27 (60) 120 >1rik_A E6APC1 peptide; E6-bin 44.1 10 0.0003 18.8 1.4 10 28-37 4-13 (29) 121 >1v54_F VI, cytochrome C oxida 43.8 15 0.00043 17.8 2.1 26 14-39 30-56 (62) 122 >3dpu_A RAB family protein; ro 43.7 7.4 0.00022 19.6 0.6 34 9-42 106-148 (161) 123 >1vq8_1 50S ribosomal protein 43.3 15 0.00045 17.7 2.1 23 10-34 18-40 (57) 124 >2ebt_A Krueppel-like factor 5 43.1 11 0.00032 18.6 1.4 19 24-42 2-20 (29) 125 >1twf_I B12.6, DNA-directed RN 42.9 11 0.00032 18.6 1.3 31 8-38 18-59 (69) 126 >2els_A Zinc finger protein 40 42.8 11 0.00034 18.5 1.4 20 23-42 6-25 (36) 127 >2en2_A B-cell lymphoma 6 prot 42.7 12 0.00036 18.3 1.6 17 23-39 8-24 (42) 128 >2vf7_A UVRA2, excinuclease AB 42.6 20 0.00058 17.0 2.6 29 12-40 41-76 (77) 129 >1fv5_A First zinc finger of U 42.6 6.9 0.0002 19.8 0.3 13 26-38 8-20 (36) 130 >2odx_A Cytochrome C oxidase p 42.5 15 0.00043 17.8 2.0 27 14-40 43-70 (80) 131 >2ee8_A Protein ODD-skipped-re 41.2 13 0.00037 18.2 1.5 20 23-42 14-33 (47) 132 >1x4l_A Skeletal muscle LIM-pr 41.2 2.9 8.5E-05 22.1 -1.8 15 22-36 11-25 (31) 133 >2jr7_A DPH3 homolog; DESR1, C 40.7 21 0.00063 16.8 2.6 26 10-36 24-55 (89) 134 >2elt_A Zinc finger protein 40 40.4 14 0.0004 18.0 1.5 19 23-41 6-24 (36) 135 >1mty_D Methane monooxygenase 39.9 15 0.00043 17.8 1.6 15 26-40 1-16 (55) 136 >1p7a_A BF3, BKLF, kruppel-lik 39.7 13 0.00039 18.1 1.4 20 23-42 8-27 (37) 137 >2jsp_A Transcriptional regula 39.7 11 0.00033 18.5 1.0 10 10-19 22-31 (33) 138 >2eod_A TNF receptor-associate 39.6 17 0.0005 17.4 1.9 27 10-36 11-48 (66) 139 >3dqy_A Toluene 1,2-dioxygenas 39.6 16 0.00048 17.5 1.8 31 9-39 28-60 (71) 140 >2eos_A B-cell lymphoma 6 prot 39.3 14 0.0004 18.0 1.4 19 23-41 8-26 (42) 141 >2fiy_A Protein FDHE homolog; 39.1 15 0.00043 17.8 1.5 23 11-36 55-77 (154) 142 >1yop_A KTI11P; zinc finger, m 39.1 11 0.00033 18.5 0.9 26 10-36 24-55 (83) 143 >2i13_A AART; DNA binding, zin 39.0 14 0.00041 17.9 1.4 18 24-41 2-19 (28) 144 >2cot_A Zinc finger protein 43 38.7 15 0.00043 17.8 1.5 20 22-41 14-33 (42) 145 >2elu_A Zinc finger protein 40 38.6 9.7 0.00029 18.9 0.5 19 5-23 5-23 (37) 146 >3lcz_A YCZA, inhibitor of tra 38.4 14 0.00042 17.9 1.4 23 9-35 9-32 (53) 147 >2jp9_A Wilms tumor 1; DNA bin 38.1 13 0.00039 18.1 1.2 17 25-41 2-18 (27) 148 >2i13_A AART; DNA binding, zin 36.9 15 0.00043 17.8 1.3 16 25-40 2-17 (27) 149 >1wjp_A Zinc finger protein 29 36.8 12 0.00035 18.4 0.8 29 11-39 18-56 (67) 150 >2csh_A Zinc finger protein 29 36.7 15 0.00045 17.7 1.3 14 25-38 2-15 (28) 151 >1ryq_A DNA-directed RNA polym 36.7 13 0.00039 18.1 1.0 22 9-35 11-32 (69) 152 >2de6_A Terminal oxygenase com 36.7 18 0.00053 17.3 1.7 32 9-40 66-101 (147) 153 >1a1h_A QGSR zinc finger pepti 36.4 17 0.0005 17.4 1.5 18 24-41 2-19 (32) 154 >2i13_A AART; DNA binding, zin 36.3 17 0.0005 17.4 1.5 31 11-41 23-64 (73) 155 >1wge_A Hypothetical protein 2 36.1 14 0.00041 18.0 1.0 26 10-36 31-62 (83) 156 >2con_A RUH-035 protein, NIN o 36.0 24 0.00071 16.5 2.2 22 11-34 17-38 (79) 157 >2ej4_A Zinc finger protein ZI 35.9 19 0.00057 17.1 1.7 12 26-37 25-36 (95) 158 >3dpt_A ROCO, RAB family prote 35.8 12 0.00034 18.4 0.6 34 9-42 106-148 (161) 159 >2enc_A Zinc finger protein 22 35.4 18 0.00053 17.3 1.5 20 22-41 8-27 (46) 160 >2i13_A AART; DNA binding, zin 35.3 18 0.00053 17.3 1.5 18 24-41 2-19 (33) 161 >2eme_A Zinc finger protein 47 35.2 18 0.00054 17.3 1.5 20 23-42 9-28 (46) 162 >2ba1_A Archaeal exosome RNA b 34.9 14 0.00042 17.9 0.9 11 25-35 10-20 (34) 163 >1a7i_A QCRP2 (LIM1); LIM doma 34.9 14 0.00041 18.0 0.8 21 4-24 2-22 (40) 164 >1x6h_A Transcriptional repres 34.7 19 0.00056 17.1 1.5 19 23-41 12-30 (41) 165 >1s5p_A NAD-dependent deacetyl 34.5 14 0.00042 17.9 0.9 31 9-39 113-147 (235) 166 >2dlq_A GLI-kruppel family mem 34.5 18 0.00053 17.3 1.4 22 23-44 4-25 (31) 167 >2csh_A Zinc finger protein 29 34.3 16 0.00048 17.5 1.1 12 25-36 2-13 (48) 168 >1llm_C Chimera of ZIF23-GCN4; 33.8 19 0.00057 17.1 1.4 19 24-42 2-20 (61) 169 >2emy_A Zinc finger protein 26 33.8 21 0.00063 16.8 1.7 20 23-42 9-28 (46) 170 >2yur_A Retinoblastoma-binding 33.6 21 0.00062 16.9 1.6 28 10-41 16-43 (74) 171 >2zt5_A Glycyl-tRNA synthetase 33.4 16 0.00048 17.5 1.0 15 27-41 8-22 (86) 172 >2eps_A POZ-, at HOOK-, and zi 33.2 22 0.00065 16.7 1.7 13 24-36 10-22 (54) 173 >2qpz_A Naphthalene 1,2-dioxyg 33.1 21 0.00063 16.8 1.6 31 9-39 28-60 (71) 174 >1l1o_C Replication protein A 33.0 23 0.00068 16.6 1.7 35 4-38 38-74 (162) 175 >3jyw_Y 60S ribosomal protein 32.9 28 0.00082 16.1 2.1 25 8-34 14-38 (52) 176 >1ejp_A Syndecan-4; symmetric- 32.8 19 0.00056 17.1 1.3 17 19-35 9-25 (28) 177 >1a1h_A QGSR zinc finger pepti 32.6 20 0.0006 16.9 1.4 18 24-41 2-19 (28) 178 >1f2i_G Fusion of N-terminal 1 32.6 20 0.0006 16.9 1.4 18 24-41 2-19 (28) 179 >1zbd_B Rabphilin-3A; G protei 32.4 16 0.00047 17.6 0.8 25 12-36 1-33 (45) 180 >1x6e_A Zinc finger protein 24 32.2 22 0.00065 16.7 1.5 18 23-40 11-28 (39) 181 >2el4_A Zinc finger protein 26 32.0 25 0.00073 16.4 1.7 20 22-41 8-27 (46) 182 >1va1_A Transcription factor S 31.9 22 0.00064 16.8 1.5 19 23-41 5-25 (37) 183 >2dmd_A Zinc finger protein 64 31.9 18 0.00053 17.3 1.0 20 23-42 5-24 (38) 184 >1rim_A E6APC2 peptide; E6-bin 31.8 18 0.00052 17.3 1.0 12 28-39 4-15 (33) 185 >1ard_A Yeast transcription fa 31.7 17 0.0005 17.4 0.9 11 28-38 4-14 (29) 186 >2rpc_A Zinc finger protein ZI 31.5 25 0.00075 16.4 1.7 10 11-20 27-36 (117) 187 >2ely_A Zinc finger protein 22 31.4 21 0.00062 16.9 1.3 19 23-41 9-27 (46) 188 >1joc_A EEA1, early endosomal 31.0 28 0.00084 16.1 1.9 24 13-37 1-24 (53) 189 >2yww_A Aspartate carbamoyltra 31.0 18 0.00054 17.2 0.9 23 16-38 24-48 (52) 190 >3jq1_A SUSD superfamily prote 30.9 4.8 0.00014 20.8 -2.1 10 16-25 1-10 (41) 191 >2yqq_A Zinc finger HIT domain 30.9 20 0.0006 17.0 1.2 23 8-36 11-33 (56) 192 >1ncs_A Peptide M30F, transcri 30.8 20 0.00058 17.1 1.1 11 28-38 22-32 (47) 193 >2jvx_A NF-kappa-B essential m 30.6 18 0.00053 17.3 0.9 11 27-37 4-14 (28) 194 >2ayj_A 50S ribosomal protein 30.6 39 0.0012 15.2 2.6 25 8-35 18-42 (56) 195 >2em2_A Zinc finger protein 28 30.3 24 0.00072 16.5 1.5 20 22-41 8-27 (46) 196 >2em5_A ZFP-95, zinc finger pr 30.1 25 0.00074 16.4 1.5 20 23-42 9-28 (46) 197 >1p91_A Ribosomal RNA large su 30.1 26 0.00076 16.3 1.6 26 11-37 4-29 (269) 198 >2epc_A Zinc finger protein 32 29.9 26 0.00077 16.3 1.6 18 23-40 8-25 (42) 199 >2emz_A ZFP-95, zinc finger pr 29.5 23 0.00067 16.7 1.2 19 23-41 9-27 (46) 200 >2ytp_A Zinc finger protein 48 29.5 27 0.0008 16.2 1.6 19 23-41 9-27 (46) 201 >2eoz_A Zinc finger protein 47 29.5 20 0.00059 17.0 0.9 20 23-42 9-28 (46) 202 >1ubd_C Protein (YY1 zinc fing 29.5 20 0.0006 16.9 1.0 16 27-42 5-20 (28) 203 >2cot_A Zinc finger protein 43 29.4 26 0.00077 16.3 1.5 18 24-41 2-19 (35) 204 >2djb_A Polycomb group ring fi 29.2 40 0.0012 15.2 2.4 34 5-42 11-44 (72) 205 >2r6f_A Excinuclease ABC subun 29.2 20 0.0006 17.0 0.9 13 26-38 124-136 (147) 206 >2d9h_A Zinc finger protein 69 29.2 22 0.00064 16.8 1.1 10 28-37 7-16 (45) 207 >3i1n_1 50S ribosomal protein 29.1 32 0.00095 15.7 1.9 35 1-35 1-46 (55) 208 >1tf6_A Protein (transcription 29.1 26 0.00076 16.3 1.4 20 23-42 1-22 (36) 209 >2d8s_A Cellular modulator of 28.6 25 0.00075 16.4 1.3 28 11-38 36-70 (80) 210 >1vq8_Z 50S ribosomal protein 28.5 24 0.0007 16.5 1.2 29 7-37 25-56 (83) 211 >2emh_A Zinc finger protein 48 28.4 29 0.00086 16.0 1.6 20 23-42 9-28 (46) 212 >1x4v_A Hypothetical protein L 28.4 22 0.00066 16.7 1.0 15 25-39 26-40 (63) 213 >3ga8_A HTH-type transcription 28.2 21 0.00061 16.9 0.8 33 11-43 4-54 (78) 214 >2em9_A Zinc finger protein 22 28.1 28 0.00083 16.1 1.5 21 22-42 8-28 (46) 215 >2enh_A Zinc finger protein 28 28.1 27 0.0008 16.2 1.4 19 22-40 8-26 (46) 216 >2eou_A Zinc finger protein 47 27.8 25 0.00074 16.4 1.2 20 23-42 9-28 (44) 217 >1qyp_A RNA polymerase II; tra 27.8 17 0.0005 17.5 0.3 28 9-36 15-53 (57) 218 >2ctt_A DNAJ homolog subfamily 27.7 37 0.0011 15.3 2.1 30 5-34 24-53 (104) 219 >2eml_A Zinc finger protein 28 27.6 29 0.00087 16.0 1.5 20 23-42 9-28 (46) 220 >2ytb_A Zinc finger protein 32 27.6 30 0.00089 15.9 1.6 20 23-42 8-27 (42) 221 >2epx_A Zinc finger protein 28 27.5 28 0.00082 16.1 1.4 17 23-39 9-25 (47) 222 >2eof_A Zinc finger protein 26 27.5 29 0.00084 16.0 1.4 21 22-42 8-28 (44) 223 >2en7_A Zinc finger protein 26 27.4 26 0.00078 16.3 1.3 20 23-42 9-28 (44) 224 >2yso_A ZFP-95, zinc finger pr 27.3 29 0.00086 16.0 1.4 19 23-41 9-27 (46) 225 >2ckl_A Polycomb group ring fi 27.3 27 0.00081 16.2 1.3 31 7-41 13-43 (84) 226 >3iuf_A Zinc finger protein UB 27.0 25 0.00074 16.4 1.1 20 24-43 5-24 (48) 227 >2emg_A Zinc finger protein 48 27.0 29 0.00085 16.0 1.4 18 23-40 9-26 (46) 228 >2eop_A Zinc finger protein 26 27.0 30 0.00088 15.9 1.5 20 23-42 9-28 (46) 229 >2ytk_A Zinc finger protein 34 26.8 32 0.00096 15.7 1.6 20 23-42 9-28 (46) 230 >2epv_A Zinc finger protein 26 26.8 31 0.00091 15.9 1.5 19 23-41 9-27 (44) 231 >2el5_A Zinc finger protein 26 26.7 31 0.00092 15.8 1.5 20 23-42 7-26 (42) 232 >2em8_A Zinc finger protein 22 26.7 31 0.00092 15.8 1.5 21 22-42 8-28 (46) 233 >2epw_A Zinc finger protein 26 26.7 32 0.00093 15.8 1.5 19 22-40 8-26 (46) 234 >2en8_A Zinc finger protein 22 26.5 32 0.00096 15.7 1.6 20 23-42 9-28 (46) 235 >1ubd_C Protein (YY1 zinc fing 26.4 31 0.00092 15.8 1.5 19 24-42 2-22 (30) 236 >2ep1_A Zinc finger protein 48 26.2 30 0.00089 15.9 1.4 20 23-42 9-28 (46) 237 >2i13_A AART; DNA binding, zin 25.9 28 0.00084 16.1 1.2 18 24-41 2-19 (29) 238 >1x6h_A Transcriptional repres 25.6 28 0.00084 16.1 1.1 16 25-40 5-20 (45) 239 >2ct1_A Transcriptional repres 25.6 25 0.00075 16.4 0.9 12 27-38 5-16 (36) 240 >1s1i_9 L37A, YL35, 60S riboso 25.5 27 0.00079 16.2 1.0 30 7-38 33-65 (91) 241 >1x6e_A Zinc finger protein 24 25.5 30 0.00088 15.9 1.2 18 25-42 2-19 (33) 242 >2ebt_A Krueppel-like factor 5 25.5 33 0.00099 15.6 1.5 18 23-40 12-31 (41) 243 >1a1h_A QGSR zinc finger pepti 25.5 30 0.00089 15.9 1.3 17 25-41 3-21 (30) 244 >1cl4_A Protein (GAG polyprote 25.4 29 0.00085 16.0 1.2 16 22-37 26-41 (60) 245 >2zkr_2 60S ribosomal protein 25.4 42 0.0012 15.0 2.0 23 10-34 17-39 (97) 246 >2emk_A Zinc finger protein 28 25.4 33 0.00097 15.7 1.4 18 23-40 9-26 (46) 247 >2ytn_A Zinc finger protein 34 25.3 35 0.001 15.5 1.6 21 22-42 8-28 (46) 248 >2emb_A Zinc finger protein 47 25.2 34 0.00099 15.6 1.5 20 23-42 9-28 (44) 249 >2em0_A Zinc finger protein 22 25.1 30 0.00088 15.9 1.2 20 23-42 9-28 (46) 250 >2el6_A Zinc finger protein 26 25.1 35 0.001 15.5 1.5 20 23-42 9-28 (46) 251 >1nkw_1 50S ribosomal protein 25.1 27 0.00079 16.2 0.9 28 7-34 36-73 (82) 252 >2ep2_A Zinc finger protein 48 25.1 35 0.001 15.5 1.5 18 23-40 9-26 (46) 253 >2zkr_z 60S ribosomal protein 24.9 30 0.00088 15.9 1.1 28 8-37 35-65 (71) 254 >2ytt_A Zinc finger protein 47 24.9 31 0.00091 15.8 1.2 18 23-40 9-26 (46) 255 >2yrj_A Zinc finger protein 47 24.8 36 0.0011 15.4 1.6 20 22-41 8-27 (46) 256 >2eoh_A Zinc finger protein 28 24.7 35 0.001 15.5 1.5 19 23-41 9-27 (46) 257 >2eox_A Zinc finger protein 47 24.7 28 0.00082 16.1 0.9 19 23-41 9-27 (44) 258 >1ffk_W Ribosomal protein L37A 24.6 27 0.0008 16.2 0.9 29 7-37 25-56 (61) 259 >1x4s_A Protein FON, zinc fing 24.6 31 0.00091 15.9 1.2 23 9-36 14-36 (59) 260 >2eoo_A ZFP-95, zinc finger pr 24.5 36 0.0011 15.4 1.5 18 23-40 9-26 (46) 261 >2d5b_A Methionyl-tRNA synthet 24.5 27 0.00079 16.2 0.8 28 11-38 11-38 (119) 262 >2ept_A Zinc finger protein 32 24.5 36 0.0011 15.5 1.5 19 23-41 7-25 (41) 263 >1wfe_A Riken cDNA 2310008M20 24.5 31 0.00091 15.9 1.1 29 7-39 23-53 (86) 264 >2vm5_A Baculoviral IAP repeat 24.4 39 0.0012 15.2 1.7 19 18-36 47-66 (106) 265 >2elz_A Zinc finger protein 22 24.1 37 0.0011 15.3 1.5 20 23-42 9-28 (46) 266 >2em6_A Zinc finger protein 22 24.0 37 0.0011 15.4 1.5 20 23-42 9-28 (46) 267 >2yu5_A Zinc finger protein 47 23.9 36 0.0011 15.5 1.4 19 23-41 9-27 (44) 268 >1irx_A Lysyl-tRNA synthetase; 23.9 30 0.0009 15.9 1.0 10 27-36 40-49 (84) 269 >1gxm_A Pectate lyase; mechani 23.8 23 0.00069 16.6 0.4 25 17-41 97-123 (151) 270 >2em4_A Zinc finger protein 28 23.6 42 0.0012 15.0 1.7 19 23-41 9-27 (46) 271 >2eoy_A Zinc finger protein 47 23.6 39 0.0012 15.2 1.5 18 23-40 9-26 (46) 272 >2emp_A Zinc finger protein 34 23.6 40 0.0012 15.1 1.6 20 23-42 9-28 (46) 273 >2ytj_A Zinc finger protein 48 23.6 41 0.0012 15.1 1.7 20 23-42 9-28 (46) 274 >2eoj_A Zinc finger protein 26 23.5 29 0.00086 16.0 0.9 19 23-41 9-27 (44) 275 >2yu8_A Zinc finger protein 34 23.5 38 0.0011 15.3 1.5 20 22-41 8-27 (46) 276 >2yrk_A Zinc finger homeobox p 23.4 31 0.00092 15.8 1.0 16 23-38 10-25 (55) 277 >1bbo_A Human enhancer-binding 23.3 31 0.00092 15.8 1.0 13 28-40 3-15 (33) 278 >2ytg_A ZFP-95, zinc finger pr 23.3 40 0.0012 15.1 1.6 19 23-41 9-27 (46) 279 >2yth_A Zinc finger protein 22 23.2 39 0.0012 15.2 1.5 20 22-41 8-27 (46) 280 >2hu9_A MERP, mercuric transpo 23.1 28 0.00084 16.1 0.8 10 28-37 3-12 (64) 281 >3k1l_B Fancl; UBC, ring, RWD, 23.1 54 0.0016 14.4 2.6 30 9-38 12-59 (67) 282 >2poi_A Baculoviral IAP repeat 23.0 43 0.0013 15.0 1.7 20 17-36 45-65 (94) 283 >2yt9_A Zinc finger-containing 23.0 35 0.001 15.5 1.2 18 25-42 2-19 (36) 284 >1g73_C Inhibitors of apoptosi 22.9 43 0.0013 14.9 1.7 18 19-36 53-70 (121) 285 >2zjr_1 50S ribosomal protein 22.7 40 0.0012 15.1 1.5 35 1-35 1-47 (55) 286 >2emm_A ZFP-95, zinc finger pr 22.6 46 0.0013 14.8 1.7 21 22-42 8-28 (46) 287 >1ile_A Ilers, isoleucyl-tRNA 22.5 22 0.00065 16.7 0.1 13 28-40 11-23 (170) 288 >2eq4_A Zinc finger protein 22 22.5 36 0.0011 15.4 1.2 19 23-41 9-27 (46) 289 >2en9_A Zinc finger protein 28 22.4 39 0.0011 15.2 1.3 20 23-42 9-28 (46) 290 >2eom_A ZFP-95, zinc finger pr 22.4 37 0.0011 15.3 1.2 19 23-41 9-27 (46) 291 >1g25_A CDK-activating kinase 22.3 31 0.00091 15.9 0.8 27 11-37 5-31 (65) 292 >1njq_A Superman protein; zinc 22.3 39 0.0011 15.2 1.3 16 27-42 7-22 (39) 293 >1ltl_A DNA replication initia 22.2 31 0.00091 15.8 0.8 12 25-36 23-35 (39) 294 >2elo_A Zinc finger protein 40 22.2 23 0.00068 16.6 0.2 18 27-44 10-27 (37) 295 >2en3_A ZFP-95, zinc finger pr 22.1 43 0.0013 15.0 1.5 19 23-41 9-27 (46) 296 >1lv3_A Hypothetical protein Y 22.0 38 0.0011 15.3 1.2 11 26-36 9-19 (68) 297 >2ytf_A Zinc finger protein 26 22.0 43 0.0013 15.0 1.5 20 23-42 9-28 (46) 298 >2emx_A Zinc finger protein 26 21.9 45 0.0013 14.9 1.6 17 23-39 7-23 (44) 299 >1f2i_G Fusion of N-terminal 1 21.9 39 0.0011 15.2 1.2 18 23-40 16-35 (45) 300 >2yte_A Zinc finger protein 47 21.8 41 0.0012 15.1 1.4 18 23-40 7-24 (42) 301 >2eoq_A Zinc finger protein 22 21.8 39 0.0012 15.2 1.3 19 23-41 9-27 (46) 302 >2ea9_A JW2626, hypothetical p 21.8 21 0.00062 16.9 -0.1 15 1-15 1-15 (105) 303 >3gpu_A DNA glycosylase; DNA g 21.7 41 0.0012 15.1 1.4 23 16-38 86-108 (124) 304 >2em3_A Zinc finger protein 28 21.6 45 0.0013 14.9 1.5 19 23-41 9-27 (46) 305 >1tf6_A Protein (transcription 21.5 39 0.0011 15.2 1.2 18 23-40 9-28 (40) 306 >2r6f_A Excinuclease ABC subun 21.5 58 0.0017 14.2 2.8 31 10-40 40-77 (78) 307 >2eq1_A Zinc finger protein 34 21.5 42 0.0012 15.0 1.3 18 23-40 9-26 (46) 308 >2epz_A Zinc finger protein 28 21.4 43 0.0013 15.0 1.4 17 23-39 9-25 (46) 309 >1i7f_A Heat shock protein 33; 21.1 23 0.00069 16.6 0.0 12 26-37 82-93 (114) 310 >1hqm_D DNA-directed RNA polym 21.1 36 0.0011 15.4 1.0 28 9-38 55-82 (122) 311 >2egp_A Tripartite motif-conta 21.1 59 0.0017 14.1 2.0 18 25-42 52-69 (79) 312 >2epa_A Krueppel-like factor 1 21.1 47 0.0014 14.7 1.6 18 23-40 6-25 (34) 313 >2jp9_A Wilms tumor 1; DNA bin 20.9 42 0.0012 15.0 1.2 19 24-42 2-22 (31) 314 >2emj_A Zinc finger protein 28 20.8 49 0.0014 14.6 1.6 18 23-40 9-26 (46) 315 >2yti_A Zinc finger protein 34 20.7 44 0.0013 14.9 1.3 19 23-41 9-27 (46) 316 >1vyx_A ORF K3, K3RING; zinc-b 20.7 38 0.0011 15.3 1.0 33 9-41 6-38 (60) 317 >2eon_A ZFP-95, zinc finger pr 20.6 48 0.0014 14.7 1.5 20 23-42 9-28 (46) 318 >2jp9_A Wilms tumor 1; DNA bin 20.6 45 0.0013 14.9 1.4 19 23-41 3-23 (32) 319 >2epu_A Zinc finger protein 32 20.6 38 0.0011 15.3 1.0 18 23-40 9-26 (45) 320 >2ene_A Zinc finger protein 34 20.6 50 0.0015 14.6 1.6 18 23-40 9-26 (46) 321 >2exu_A Transcription initiati 20.5 29 0.00086 16.0 0.4 25 8-34 3-29 (91) 322 >1xg8_A Hypothetical protein S 20.5 25 0.00073 16.4 0.0 10 6-15 13-22 (111) 323 >2odd_A Protein CBFA2T1; MYND 20.5 61 0.0018 14.0 2.1 29 2-36 10-38 (64) 324 >2emf_A Zinc finger protein 48 20.5 51 0.0015 14.5 1.6 20 23-42 9-28 (46) 325 >2b3y_A Iron-responsive elemen 20.5 34 0.001 15.6 0.7 11 15-25 16-26 (155) 326 >2ytq_A Zinc finger protein 26 20.3 47 0.0014 14.7 1.4 19 23-41 9-27 (46) 327 >2eov_A Zinc finger protein 48 20.3 46 0.0014 14.8 1.4 18 23-40 9-26 (46) 328 >2ea6_A Ring finger protein 4; 20.3 38 0.0011 15.3 0.9 35 8-42 14-50 (69) 329 >2eow_A Zinc finger protein 34 20.2 48 0.0014 14.7 1.4 20 23-42 9-28 (46) 330 >2ema_A Zinc finger protein 34 20.2 53 0.0016 14.4 1.6 20 23-42 9-28 (46) 331 >3hl5_A Baculoviral IAP repeat 20.2 53 0.0016 14.4 1.7 18 19-36 38-56 (95) 332 >2enf_A Zinc finger protein 34 20.0 47 0.0014 14.7 1.3 20 23-42 9-28 (46) No 1 >>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} (A:1-62) Probab=94.85 E-value=0.013 Score=36.42 Aligned_cols=31 Identities=16% Similarity=0.428 Sum_probs=27.4 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCEECHHHH Q ss_conf 1788887442148887227789871532331 Q gi|254780459|r 11 TCPDTGKRFYDLNKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~ 41 (129) .||.|+.-|-=--..-.|||.||.||.+... T Consensus 29 ~CPkC~SeYTYeDg~l~VCPECghEW~~~~~ 59 (62) T 2akl_A 29 PCPQCNSEYTYEDGALLVCPECAHEWSPNEA 59 (62) T ss_dssp CCTTTCCCCCEECSSSEEETTTTEEECTTTT T ss_pred CCCCCCCCCEECCCCEEECCCCCCCCCCCCC T ss_conf 8988899132837998899876374785535 No 2 >>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} (A:) Probab=94.29 E-value=0.026 Score=34.65 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=28.6 Q ss_pred CCCCCCCCCCE--EEECCCCCCCCCCCCCEECHHHH Q ss_conf 83117888874--42148887227789871532331 Q gi|254780459|r 8 TKRTCPDTGKR--FYDLNKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 8 ~KR~C~~Cg~K--FYDlnk~PiiCP~CG~e~~~~~~ 41 (129) .+++||.||.. -||.++--+||..||..+.-..+ T Consensus 4 ~~~~Cp~Cg~~~iv~D~~~Ge~vC~~CG~Vlee~~i 39 (50) T 1pft_A 4 KQKVCPACESAELIYDPERGEIVCAKCGYVIEENII 39 (50) T ss_dssp SCCSCTTTSCCCEEEETTTTEEEESSSCCBCCCCCC T ss_pred CCCCCCCCCCCCEEEECCCCEEECCCCCCEECCCCC T ss_conf 655592987982788788791851269859243424 No 3 >>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} (M:1-57) Probab=93.97 E-value=0.024 Score=34.89 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=28.1 Q ss_pred HHHCCCCCCCCCCC----EEEECCCCCCCCCCCCCEEC Q ss_conf 22278311788887----44214888722778987153 Q gi|254780459|r 4 PELGTKRTCPDTGK----RFYDLNKQVIVSPYTQNSWP 37 (129) Q Consensus 4 ~elG~KR~C~~Cg~----KFYDlnk~PiiCP~CG~e~~ 37 (129) .++-.+++||.||. -.+|+.+--+||-.||-.+. T Consensus 16 ~~~~~~~~CPeC~s~~~~lv~D~~~Ge~VC~~CGlVi~ 53 (57) T 3k1f_M 16 PNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (57) T ss_dssp SCCCCCCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCC T ss_pred CCCEEEEECCCCCCCCCEEEEECCCCCEECCCCCEEEC T ss_conf 99864468989999898898879889679735891944 No 4 >>1dl6_A Transcription factor II B (TFIIB); zinc ribbon; NMR {Homo sapiens} (A:) Probab=93.76 E-value=0.044 Score=33.28 Aligned_cols=39 Identities=13% Similarity=0.126 Sum_probs=31.8 Q ss_pred CCHHHCCCCCCCCCCCE--EEECCCCCCCCCCCCCEECHHH Q ss_conf 75222783117888874--4214888722778987153233 Q gi|254780459|r 2 AKPELGTKRTCPDTGKR--FYDLNKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 2 aK~elG~KR~C~~Cg~K--FYDlnk~PiiCP~CG~e~~~~~ 40 (129) .+...-.++.||.||.. -||..+--+||-.||..+.-.. T Consensus 4 ~~~~~~~~~~Cp~Cg~~~iv~D~~~Ge~vC~~CG~Vlee~~ 44 (58) T 1dl6_A 4 SRLDALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRV 44 (58) T ss_dssp CSCCCCSCCSBTTBSSSCCEECSSSCCEECTTTCCEECCSC T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCEEECCCCCCEECCCC T ss_conf 43335575599699798777887888185202998933313 No 5 >>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, cytoplasm, metal-binding, nucleotide biosynthesis, nucleotide-binding; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* (A:118-162) Probab=92.66 E-value=0.073 Score=31.92 Aligned_cols=30 Identities=10% Similarity=0.122 Sum_probs=23.3 Q ss_pred CCCCCCCCCCCEEEECCCC---CCCCCCCCCEE Q ss_conf 7831178888744214888---72277898715 Q gi|254780459|r 7 GTKRTCPDTGKRFYDLNKQ---VIVSPYTQNSW 36 (129) Q Consensus 7 G~KR~C~~Cg~KFYDlnk~---PiiCP~CG~e~ 36 (129) ---|+|++||+-|--..+. +-+|..||.++ T Consensus 8 sgRr~C~~CG~~Yh~~~~pP~~~g~CD~cg~~L 40 (45) T 3dl0_A 8 TGRRICSVCGTTYHLVFNPPKTPGICDKDGGEL 40 (45) T ss_dssp HTEEEETTTCCEEETTTBCCSSTTBCTTTCCBE T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH T ss_conf 677401567861012468844457540234443 No 6 >>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structural genomics, PSI; NMR {Pyrococcus furiosus dsm 3638} (A:) Probab=92.07 E-value=0.072 Score=31.94 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=25.5 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCEEC Q ss_conf 1178888744214888722778987153 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQVIVSPYTQNSWP 37 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~ 37 (129) =.|-+||--|-|.-|.|=-||.|..+|. T Consensus 68 p~C~~CGf~F~d~~~kPsRCP~CkSe~I 95 (105) T 2gmg_A 68 AQCRKCGFVFKAEINIPSRCPKCKSEWI 95 (105) T ss_dssp CBBTTTCCBCCCCSSCCSSCSSSCCCCB T ss_pred HHHCCCCCEECCCCCCCCCCCCCCCCCC T ss_conf 3122077772677899998999887263 No 7 >>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} (A:116-162) Probab=91.86 E-value=0.1 Score=30.96 Aligned_cols=30 Identities=7% Similarity=0.095 Sum_probs=22.8 Q ss_pred CCCCCCCCCCCEEEECC---CCCCCCCCCCCEE Q ss_conf 78311788887442148---8872277898715 Q gi|254780459|r 7 GTKRTCPDTGKRFYDLN---KQVIVSPYTQNSW 36 (129) Q Consensus 7 G~KR~C~~Cg~KFYDln---k~PiiCP~CG~e~ 36 (129) ---|+|++||+-|--.. |.+-+|..||... T Consensus 10 sgRr~C~~cg~~Yn~~~~pPk~~~~CD~cg~~L 42 (47) T 3fb4_A 10 TGRWICKTCGATYHTIFNPPAVEGICDKDGGEL 42 (47) T ss_dssp HSEEEETTTCCEEETTTBCCSSTTBCTTTCCBE T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 334301577885534579997667543446512 No 8 >>1nnq_A Rubrerythrin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.35A {Pyrococcus furiosus} (A:67-171) Probab=91.73 E-value=0.11 Score=30.85 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=22.1 Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCCE Q ss_conf 78311788887442148887227789871 Q gi|254780459|r 7 GTKRTCPDTGKRFYDLNKQVIVSPYTQNS 35 (129) Q Consensus 7 G~KR~C~~Cg~KFYDlnk~PiiCP~CG~e 35 (129) +++-+|+.||--| .+.-|-+||-||+- T Consensus 71 ~~~~~C~vCGyi~--~ge~P~~CPvC~~~ 97 (105) T 1nnq_A 71 KKVYICPICGYTA--VDEAPEYCPVCGAP 97 (105) T ss_dssp SCEEECTTTCCEE--ESCCCSBCTTTCCB T ss_pred CCEEECCCCCCCC--CCCCCCCCCCCCCC T ss_conf 7834899893928--99999979899896 No 9 >>2waq_P DNA-directed RNA polymerase RPO12 subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 3hkz_P (P:) Probab=91.67 E-value=0.091 Score=31.32 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=22.2 Q ss_pred CCCCCCCCEE--EECCCC-CCCCCCCCCEE Q ss_conf 1178888744--214888-72277898715 Q gi|254780459|r 10 RTCPDTGKRF--YDLNKQ-VIVSPYTQNSW 36 (129) Q Consensus 10 R~C~~Cg~KF--YDlnk~-PiiCP~CG~e~ 36 (129) -.|..||+.| -+|.+. -|-||+||.-+ T Consensus 4 Y~C~rCg~~~s~~el~~lp~irCPyCG~kI 33 (48) T 2waq_P 4 YRCGKCWKTFTDEQLKVLPGVRCPYCGYKI 33 (48) T ss_dssp --CCCCSSSCCCCCSCCCSSSSCTTTCCCC T ss_pred EEECCCCCCCCHHHHHHCCCCCCCCCCCEE T ss_conf 884025778068788457886446357289 No 10 >>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} (B:1-61) Probab=91.58 E-value=0.068 Score=32.11 Aligned_cols=31 Identities=23% Similarity=0.412 Sum_probs=26.0 Q ss_pred CCCCCCCCCCCEEE--ECCCCCCCCCCCCCEEC Q ss_conf 78311788887442--14888722778987153 Q gi|254780459|r 7 GTKRTCPDTGKRFY--DLNKQVIVSPYTQNSWP 37 (129) Q Consensus 7 G~KR~C~~Cg~KFY--Dlnk~PiiCP~CG~e~~ 37 (129) |.=..||+||.-.| +|.+.=-|||+||.-|. T Consensus 28 gLW~KCp~C~~~~~~k~l~~n~~VCp~Cg~Hfr 60 (61) T 2f9i_B 28 GIMTKCPKCKKIMYTKELAENLNVCFNCDHHIA 60 (61) T ss_dssp SSEEECTTTCCEEEHHHHHHTTTBCTTTCCBCC T ss_pred CCEEECCCCCCEEEHHHHHHHCCCCCCCCCCCC T ss_conf 865358898740249999984887849989770 No 11 >>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase; HET: AP5; 1.63A {Saccharomyces cerevisiae} (A:123-184) Probab=91.41 E-value=0.12 Score=30.57 Aligned_cols=31 Identities=10% Similarity=0.219 Sum_probs=25.1 Q ss_pred HCCCCCCCCCCCEEEECCCC---CCCCCCCCCEE Q ss_conf 27831178888744214888---72277898715 Q gi|254780459|r 6 LGTKRTCPDTGKRFYDLNKQ---VIVSPYTQNSW 36 (129) Q Consensus 6 lG~KR~C~~Cg~KFYDlnk~---PiiCP~CG~e~ 36 (129) +.-.|+||.||.-|.-+... +-+|+.||..+ T Consensus 7 l~gRr~c~~cG~~yn~~~~pp~~~~~cd~cg~~L 40 (62) T 1aky_A 7 ITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEAL 40 (62) T ss_dssp HHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBC T ss_pred HCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHH T ss_conf 1133122477875333458986553332112321 No 12 >>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str} (A:) Probab=91.29 E-value=0.12 Score=30.58 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=20.2 Q ss_pred EEEECCCC-CCCCCCCCCEECHHHHHCC Q ss_conf 44214888-7227789871532331012 Q gi|254780459|r 18 RFYDLNKQ-VIVSPYTQNSWPLAYFEAP 44 (129) Q Consensus 18 KFYDlnk~-PiiCP~CG~e~~~~~~~~~ 44 (129) -|-||+.+ .+|||||.|-|.-...++. T Consensus 39 vFlDMG~d~E~iCpYCSTLYry~~~L~~ 66 (87) T 2jz8_A 39 IFIDMGSTDEKICPYCSTLYRYDPSLSY 66 (87) T ss_dssp CEEECTTCCEECCTTTCCEEECCTTSCT T ss_pred EEEECCCCCEEECCCCCCEEEECCCCCC T ss_conf 9897599997988899988784777776 No 13 >>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} (A:132-179) Probab=91.06 E-value=0.14 Score=30.22 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=23.1 Q ss_pred HCCCCCCCCCCCEEEEC-C--CCCCCCCCCCCEE Q ss_conf 27831178888744214-8--8872277898715 Q gi|254780459|r 6 LGTKRTCPDTGKRFYDL-N--KQVIVSPYTQNSW 36 (129) Q Consensus 6 lG~KR~C~~Cg~KFYDl-n--k~PiiCP~CG~e~ 36 (129) |.--|+|++||.-|--+ | |.+=+|..||..+ T Consensus 9 lsgRr~C~~cg~~Yn~~~~ppk~~g~Cd~cg~~L 42 (48) T 1ak2_A 9 ITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPL 42 (48) T ss_dssp HHTCEECTTTCCEEBTTTBCCSSTTBCTTTCCBC T ss_pred HHCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHH T ss_conf 5055121368971233457732345542024343 No 14 >>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing; gene regulation, transferase; 1.70A {Homo sapiens} (A:1-21,A:154-204) Probab=90.64 E-value=0.1 Score=31.00 Aligned_cols=32 Identities=16% Similarity=0.120 Sum_probs=24.4 Q ss_pred CCCCCCCCCEE-EEC--------CCCCCCCCCCCCEECHHH Q ss_conf 31178888744-214--------888722778987153233 Q gi|254780459|r 9 KRTCPDTGKRF-YDL--------NKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 9 KR~C~~Cg~KF-YDl--------nk~PiiCP~CG~e~~~~~ 40 (129) +-.|.+||++| |+. ...|..||.||..+-|.. T Consensus 27 ~~~C~~Cg~~~~~~~~~~~~~i~~~~~P~Cp~CGGilRPdV 67 (72) T 1j8f_A 27 TSHCVSASCRHEYPLSWMKEKIFSEVTPKCEDCQSLVKPDI 67 (72) T ss_dssp EEEESCTTTCCEECHHHHHHHHHTTCCCBCTTTCCBEEEEE T ss_pred EEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCE T ss_conf 24775789986555166665540467888876798458878 No 15 >>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding, cytoplasm, nucleotide-binding; HET: AP5; 1.90A {Aquifex aeolicus} PDB: 2rh5_A (A:113-170) Probab=90.54 E-value=0.13 Score=30.44 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=22.1 Q ss_pred HCCCCCCCCCCCEEEECCCCCCCCCCCCCEE Q ss_conf 2783117888874421488872277898715 Q gi|254780459|r 6 LGTKRTCPDTGKRFYDLNKQVIVSPYTQNSW 36 (129) Q Consensus 6 lG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~ 36 (129) +...|+||.||.-|.-.. .||+||..+ T Consensus 9 l~gRr~c~~cG~~yn~~~----~~p~~g~~L 35 (58) T 2rgx_A 9 LSGRRINPETGEVYHVKY----NPPPPGVKV 35 (58) T ss_dssp HHTEEECTTTCCEEETTT----BCCCTTCCC T ss_pred HHCCCCCCCHHHCCCCCC----CCCCCCCCC T ss_conf 725663641122021102----566656522 No 16 >>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} (A:) Probab=90.44 E-value=0.21 Score=29.12 Aligned_cols=29 Identities=14% Similarity=0.279 Sum_probs=23.8 Q ss_pred CCCCCCCCEE--------EECCCCCCCCCCCCCEECH Q ss_conf 1178888744--------2148887227789871532 Q gi|254780459|r 10 RTCPDTGKRF--------YDLNKQVIVSPYTQNSWPL 38 (129) Q Consensus 10 R~C~~Cg~KF--------YDlnk~PiiCP~CG~e~~~ 38 (129) =+||.|++|| +|+...-.+|-+|++++.. T Consensus 15 y~Cp~C~~~ys~Lda~~Lld~~~~~F~C~~C~~el~e 51 (62) T 1vd4_A 15 FKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEE 51 (62) T ss_dssp EECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEE T ss_pred EECCCCCCEECHHHHHHHCCCCCCEEEECCCCCEEEC T ss_conf 0998988994676698715978991973589999764 No 17 >>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=90.15 E-value=0.21 Score=29.15 Aligned_cols=30 Identities=13% Similarity=0.248 Sum_probs=25.3 Q ss_pred CCCCCCCCCCEE-EECCCCCCCCCCCCCEEC Q ss_conf 831178888744-214888722778987153 Q gi|254780459|r 8 TKRTCPDTGKRF-YDLNKQVIVSPYTQNSWP 37 (129) Q Consensus 8 ~KR~C~~Cg~KF-YDlnk~PiiCP~CG~e~~ 37 (129) .-|-||.|+.-+ ++=.-..++||.||..|= T Consensus 24 ~~~~CP~c~~~~~~~~~~~~~~C~~C~~~fC 54 (86) T 2ct7_A 24 KFLWCAQCSFGFIYEREQLEATCPQCHQTFC 54 (86) T ss_dssp CEECCSSSCCCEECCCSCSCEECTTTCCEEC T ss_pred CCEECCCCCCEEEECCCCCEEECCCCCCEEC T ss_conf 9648999997589779999778999898353 No 18 >>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structural genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* (A:138-201) Probab=89.96 E-value=0.17 Score=29.73 Aligned_cols=31 Identities=13% Similarity=0.093 Sum_probs=24.4 Q ss_pred HCCCCCCCCCCCEEEECCC---CCCCCCCCCCEE Q ss_conf 2783117888874421488---872277898715 Q gi|254780459|r 6 LGTKRTCPDTGKRFYDLNK---QVIVSPYTQNSW 36 (129) Q Consensus 6 lG~KR~C~~Cg~KFYDlnk---~PiiCP~CG~e~ 36 (129) +--.|+|+.||.-|=-+.. .+-+|..||..+ T Consensus 8 l~GRric~~cG~~yn~~~~pp~~~~~cd~cg~~L 41 (64) T 2bbw_A 8 LSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPL 41 (64) T ss_dssp HHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBC T ss_pred HHHHEECCCCCCEEECCCCCCCCCCCCCCCCCCC T ss_conf 3101000468831102457644466533334321 No 19 >>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori} (A:) Probab=89.67 E-value=0.23 Score=28.83 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=18.6 Q ss_pred CCCCCCCCCEEEECCCCC-CCCCCCCCE Q ss_conf 311788887442148887-227789871 Q gi|254780459|r 9 KRTCPDTGKRFYDLNKQV-IVSPYTQNS 35 (129) Q Consensus 9 KR~C~~Cg~KFYDlnk~P-iiCP~CG~e 35 (129) .-.|++||..| -+.... ..||+||.. T Consensus 73 ~~~C~~Cg~~~-~~~~~~~~~CP~Cgs~ 99 (119) T 2kdx_A 73 ELECKDCSHVF-KPNALDYGVCEKCHSK 99 (119) T ss_dssp EEECSSSSCEE-CSCCSTTCCCSSSSSC T ss_pred EEECCCCCCEE-CCCCCCCCCCCCCCCC T ss_conf 68977899885-3477517749097898 No 20 >>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2} (A:) Probab=89.51 E-value=0.18 Score=29.59 Aligned_cols=26 Identities=4% Similarity=0.167 Sum_probs=20.6 Q ss_pred CCCEEEECCCC--CCCCCCCCCEECHHH Q ss_conf 88744214888--722778987153233 Q gi|254780459|r 15 TGKRFYDLNKQ--VIVSPYTQNSWPLAY 40 (129) Q Consensus 15 Cg~KFYDlnk~--PiiCP~CG~e~~~~~ 40 (129) .-.-|+.|++. |..|||||.-|...- T Consensus 40 HPrVyi~ld~~~g~~~C~YCg~rfv~~~ 67 (80) T 2jvm_A 40 HPRVWLSIPHETGFVECGYCDRRYIHES 67 (80) T ss_dssp CCCEEEECCTTTCEEECSSSSCEEEEHH T ss_pred CCEEEEECCCCCCEEECCCCCCEEECHH T ss_conf 9889787589998698889988556066 No 21 >>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A* (A:) Probab=89.11 E-value=0.22 Score=29.00 Aligned_cols=27 Identities=7% Similarity=0.096 Sum_probs=18.4 Q ss_pred CCCCCCCCCEEEEC--------------------CCCCCCCCCCCCE Q ss_conf 31178888744214--------------------8887227789871 Q gi|254780459|r 9 KRTCPDTGKRFYDL--------------------NKQVIVSPYTQNS 35 (129) Q Consensus 9 KR~C~~Cg~KFYDl--------------------nk~PiiCP~CG~e 35 (129) +-.|++||..|-== -..-+.||+||.. T Consensus 70 ~~~C~~Cg~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~ 116 (139) T 3a43_A 70 VFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSH 116 (139) T ss_dssp EEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCC T ss_pred EEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 27986689840014100111212222223343234555459297798 No 22 >>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc-binding motif, DNA replication; HET: DNA; 2.50A {Saccharomyces cerevisiae} (B:) Probab=86.66 E-value=0.41 Score=27.31 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=25.6 Q ss_pred CCCCCCCCCCEEEECC-----C-----CCCCCCCCCCEECHHHHH Q ss_conf 8311788887442148-----8-----872277898715323310 Q gi|254780459|r 8 TKRTCPDTGKRFYDLN-----K-----QVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 8 ~KR~C~~Cg~KFYDln-----k-----~PiiCP~CG~e~~~~~~~ 42 (129) .+-+||+||+.|-=-+ . +-+.||+|+..|+|..+. T Consensus 21 l~l~C~~C~~~~~f~gv~~~~~~~~~~~g~~C~~c~~~~~~~~i~ 65 (206) T 3flo_B 21 LELSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQLFTPLQLT 65 (206) T ss_dssp EEEECTTTCCEEEECSSSCCSSEEEETTEEEETTTCCBCCHHHHH T ss_pred EEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH T ss_conf 898899999832478710377762114778888989918999999 No 23 >>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4KFT4, structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens pf-5} (A:) Probab=86.49 E-value=0.33 Score=27.94 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=25.0 Q ss_pred CCCCCCCCE-EEECCCCCCCCCCCCCEECHH Q ss_conf 117888874-421488872277898715323 Q gi|254780459|r 10 RTCPDTGKR-FYDLNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 10 R~C~~Cg~K-FYDlnk~PiiCP~CG~e~~~~ 39 (129) -+||.|..+ .|+-.+.-++|+.||-.|++. T Consensus 9 LaCP~ckg~L~~~~~~~~Lvc~~~~laYPI~ 39 (69) T 2pk7_A 9 LACPICKGPLKLSADKTELISKGAGLAYPIR 39 (69) T ss_dssp CCCTTTCCCCEECTTSSEEEETTTTEEEEEE T ss_pred EECCCCCCEEEEECCCCEEECCCCCCCCCCC T ss_conf 0687999874696889979748768255151 No 24 >>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor} (A:) Probab=86.16 E-value=0.37 Score=27.58 Aligned_cols=34 Identities=12% Similarity=0.145 Sum_probs=26.1 Q ss_pred HCCCCCCCCCCCEE-EECCCCCCCCCCCCCEECHH Q ss_conf 27831178888744-21488872277898715323 Q gi|254780459|r 6 LGTKRTCPDTGKRF-YDLNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 6 lG~KR~C~~Cg~KF-YDlnk~PiiCP~CG~e~~~~ 39 (129) |=.--.||-|+.++ |+-...-++||.||..|++. T Consensus 7 LL~iL~CP~ck~~L~~~~~~~~Lvc~~~~~~YPI~ 41 (56) T 2kpi_A 7 LLEILACPACHAPLEERDAELICTGQDCGLAYPVR 41 (56) T ss_dssp CTTSCCCSSSCSCEEEETTEEEECSSSCCCEEEEE T ss_pred HHHHHCCCCCCCCCEECCCCCEEECCCCCEECCCC T ss_conf 99883388999945072877889768777036452 No 25 >>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} (A:) Probab=86.14 E-value=0.53 Score=26.66 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=29.1 Q ss_pred CHHHCCCCCCCCCCCEE-EECCCCCCCCCCCCCEECHH Q ss_conf 52227831178888744-21488872277898715323 Q gi|254780459|r 3 KPELGTKRTCPDTGKRF-YDLNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 3 K~elG~KR~C~~Cg~KF-YDlnk~PiiCP~CG~e~~~~ 39 (129) +++|=---.||.|+.++ |+-...-++||.||..|++. T Consensus 4 d~~LL~iL~CP~ck~~L~~~~~~~~Lvc~~~~~~yPI~ 41 (67) T 2jny_A 4 DPQLLEVLACPKDKGPLRYLESEQLLVNERLNLAYRID 41 (67) T ss_dssp CGGGTCCCBCTTTCCBCEEETTTTEEEETTTTEEEEEE T ss_pred CHHHHHHHCCCCCCCCCEEECCCCEEECCCCCCCCCCC T ss_conf 97999882687989846594889979888658446353 No 26 >>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} (A:118-163) Probab=86.01 E-value=0.39 Score=27.45 Aligned_cols=32 Identities=13% Similarity=0.141 Sum_probs=23.5 Q ss_pred CCCCCCCCCEEE-----E-C-CCCCCCCCCCCCEECHHH Q ss_conf 311788887442-----1-4-888722778987153233 Q gi|254780459|r 9 KRTCPDTGKRFY-----D-L-NKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 9 KR~C~~Cg~KFY-----D-l-nk~PiiCP~CG~e~~~~~ 40 (129) .-.|++||++|- + + ...+..||.||..+-|.. T Consensus 4 ~~~C~~C~~~~~~~~~~~~~~~~~~P~C~~Cgg~iKPdV 42 (46) T 1yc5_A 4 EYYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPNI 42 (46) T ss_dssp EEEETTTCCEEEHHHHHHHTTTCSSCBCTTTCCBEEEEE T ss_pred EEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCEECCCE T ss_conf 357714566655567532002354687202487313528 No 27 >>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Neisseria meningitidis Z2491} (A:) Probab=85.62 E-value=0.41 Score=27.34 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=26.7 Q ss_pred HHCCCCCCCCCCCEE-EECCCCCCCCCCCCCEECHH Q ss_conf 227831178888744-21488872277898715323 Q gi|254780459|r 5 ELGTKRTCPDTGKRF-YDLNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 5 elG~KR~C~~Cg~KF-YDlnk~PiiCP~CG~e~~~~ 39 (129) +|=.--.||-|+... |+-...-++||.||..|++. T Consensus 4 ~LL~iL~CP~ck~~L~~~~~~~~Lvc~~c~~~YPI~ 39 (68) T 2jr6_A 4 KFLDILVCPVTKGRLEYHQDKQELWSRQAKLAYPIK 39 (68) T ss_dssp SSSCCCBCSSSCCBCEEETTTTEEEETTTTEEEEEE T ss_pred HHHHHHCCCCCCCEEEEECCCCEEECCCCCCCCCCC T ss_conf 999781797989981796889989628658656252 No 28 >>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50} (A:) Probab=85.58 E-value=0.44 Score=27.14 Aligned_cols=35 Identities=17% Similarity=0.325 Sum_probs=26.9 Q ss_pred HHCCCCCCCCCCCEE-EECCCCCCCCCCCCCEECHH Q ss_conf 227831178888744-21488872277898715323 Q gi|254780459|r 5 ELGTKRTCPDTGKRF-YDLNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 5 elG~KR~C~~Cg~KF-YDlnk~PiiCP~CG~e~~~~ 39 (129) +|=---.||.|+.+. |+-.+.-++|+.||..|++. T Consensus 4 ~LL~iL~CP~ck~~L~~~~~~~~Lvc~~c~~~YPI~ 39 (70) T 2js4_A 4 RLLDILVCPVCKGRLEFQRAQAELVCNADRLAFPVR 39 (70) T ss_dssp CCCCCCBCTTTCCBEEEETTTTEEEETTTTEEEEEE T ss_pred HHHHHHCCCCCCCEEEEECCCCEEECCCCCCCCCCC T ss_conf 889881687999985595889989647538656250 No 29 >>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} (B:) Probab=84.96 E-value=0.58 Score=26.40 Aligned_cols=23 Identities=26% Similarity=0.699 Sum_probs=18.9 Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCE Q ss_conf 8311788887442148887227789871 Q gi|254780459|r 8 TKRTCPDTGKRFYDLNKQVIVSPYTQNS 35 (129) Q Consensus 8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~e 35 (129) .=|.|++|+. |-|++ +||.||.. T Consensus 5 ~irkC~~c~~--YTLk~---~cP~cG~~ 27 (60) T 2apo_B 5 RXKKCPKCGL--YTLKE---ICPKCGEK 27 (60) T ss_dssp CCEECTTTCC--EESSS---BCSSSCSB T ss_pred HHHHCCCCCC--EECCC---CCCCCCCC T ss_conf 6651874554--32566---37778887 No 30 >>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} (A:) Probab=83.94 E-value=0.52 Score=26.68 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=18.7 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCE Q ss_conf 11788887442148887227789871 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQVIVSPYTQNS 35 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~PiiCP~CG~e 35 (129) +.|++||+.||-- -..||.||.. T Consensus 48 ~rC~~CG~~~~Pp---r~~C~~Cg~~ 70 (145) T 2gnr_A 48 SKCSKCGRIFVPA---RSYCEHCFVK 70 (145) T ss_dssp EECTTTCCEEESC---CSEETTTTEE T ss_pred EEECCCCCEEECC---CCCCCCCCCC T ss_conf 9918999788675---3568999997 No 31 >>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} (L:) Probab=83.61 E-value=0.95 Score=25.11 Aligned_cols=32 Identities=6% Similarity=0.057 Sum_probs=27.2 Q ss_pred HHCCCCCCCCCCCEEEECCCCCCCCCCCCCEE Q ss_conf 22783117888874421488872277898715 Q gi|254780459|r 5 ELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSW 36 (129) Q Consensus 5 elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~ 36 (129) .|...-+|-.||+++-==-++||-|..||.-+ T Consensus 24 ~~~v~YiCgeC~~~~~ik~~d~IrCreCG~RI 55 (70) T 1twf_L 24 TATLKYICAECSSKLSLSRTDAVRCKDCGHRI 55 (70) T ss_dssp -CCCCEECSSSCCEECCCTTSTTCCSSSCCCC T ss_pred CCCEEEECCCCCCCEEECCCCCEECCCCCCEE T ss_conf 85068887679982172899978878388577 No 32 >>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthesis, NESG, structural genomics, PSI-2; 1.90A {Chromobacterium violaceum atcc 12472} (A:) Probab=82.41 E-value=0.66 Score=26.08 Aligned_cols=30 Identities=17% Similarity=0.409 Sum_probs=24.9 Q ss_pred CCCCCCCCEE-EECCCCCCCCCCCCCEECHH Q ss_conf 1178888744-21488872277898715323 Q gi|254780459|r 10 RTCPDTGKRF-YDLNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 10 R~C~~Cg~KF-YDlnk~PiiCP~CG~e~~~~ 39 (129) -+||-|...+ |+-.+.-++|+.||-.|++. T Consensus 9 LaCP~ckg~L~~~~~~~~Lvc~~~~laYPI~ 39 (68) T 2hf1_A 9 LVCPLCKGPLVFDKSKDELICKGDRLAFPIK 39 (68) T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEEEEEE T ss_pred HCCCCCCCEEEEECCCCEEECCCCCCCCCCC T ss_conf 3687989873794889989638768656252 No 33 >>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} (A:118-167) Probab=82.10 E-value=0.64 Score=26.12 Aligned_cols=31 Identities=10% Similarity=-0.035 Sum_probs=23.5 Q ss_pred CCCCCCCCCEEEE-------CCCCCCCCCCCCC-EECHH Q ss_conf 3117888874421-------4888722778987-15323 Q gi|254780459|r 9 KRTCPDTGKRFYD-------LNKQVIVSPYTQN-SWPLA 39 (129) Q Consensus 9 KR~C~~Cg~KFYD-------lnk~PiiCP~CG~-e~~~~ 39 (129) +-.|..||.+|-- +...|..||.||. .+-|. T Consensus 6 ~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~Cgg~ilrPd 44 (50) T 1ma3_A 6 KLDCLDCHETYDWSEFVEDFNKGEIPRCRKCGSYYVKPR 44 (50) T ss_dssp EEEETTTCCEEEGGGTHHHHHTTCCCCCTTTCCSCEEEE T ss_pred CCEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCE T ss_conf 346777676665112110000477788653568747871 No 34 >>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase/structural protein complex; 2.10A {Pyrococcus abyssi} PDB: 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B (D:) Probab=80.97 E-value=1 Score=24.90 Aligned_cols=22 Identities=32% Similarity=0.773 Sum_probs=18.3 Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCE Q ss_conf 311788887442148887227789871 Q gi|254780459|r 9 KRTCPDTGKRFYDLNKQVIVSPYTQNS 35 (129) Q Consensus 9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e 35 (129) =|.|++|+. |-|++ +||.||.. T Consensus 5 ir~c~~c~~--YTLk~---~cP~cG~~ 26 (60) T 2aus_D 5 IRKCPKCGR--YTLKE---TCPVCGEK 26 (60) T ss_dssp CEECTTTCC--EESSS---BCTTTCSB T ss_pred HHHCCCCCC--EECCC---CCCCCCCC T ss_conf 651862565--42345---37677883 No 35 >>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondrial; NAD dependent deacetylase, sirtuin, substrate peptide complex, hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A (A:134-188) Probab=80.82 E-value=0.62 Score=26.23 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=23.9 Q ss_pred CCCCCCCCCEEE------E-CCCCCCCCCCCCCEECHHHH Q ss_conf 311788887442------1-48887227789871532331 Q gi|254780459|r 9 KRTCPDTGKRFY------D-LNKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 9 KR~C~~Cg~KFY------D-lnk~PiiCP~CG~e~~~~~~ 41 (129) +-.|.+||.+|= . +...+..||.||..+-|... T Consensus 6 ~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~Cgg~lrP~VV 45 (55) T 3glr_A 6 SATCTVCQRPFPGEDIRADVMADRVPRCPVCTGVVKPDIV 45 (55) T ss_dssp EEEETTTCCEEEGGGGHHHHHTTCCCBCTTTCCBEEEEEC T ss_pred CCEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEECCEE T ss_conf 2567899998630343433304779987234672001078 No 36 >>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A* (A:497-550) Probab=80.13 E-value=0.99 Score=25.00 Aligned_cols=25 Identities=12% Similarity=0.292 Sum_probs=15.5 Q ss_pred CCCCCCCCEEEECCCC----------CCCCCCCCCEE Q ss_conf 1178888744214888----------72277898715 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQ----------VIVSPYTQNSW 36 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~----------PiiCP~CG~e~ 36 (129) -+|++|.- ..|... .-.||.||+.. T Consensus 7 Y~C~~C~y--~ef~~~~~~~sG~DLpdk~CP~Cg~~l 41 (54) T 3f2b_A 7 YVCPNCKH--SEFFNDGSVGSGFDLPDKNCPRCGTKY 41 (54) T ss_dssp EECTTTCC--EEECCSSCCSCGGGSCCCBCTTTCCBC T ss_pred CCCCCCCC--CCCCCCCCCCCCCCCCCCCCCHHHHHH T ss_conf 24653111--211465544567777644451120233 No 37 >>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} (A:) Probab=79.98 E-value=1.3 Score=24.17 Aligned_cols=34 Identities=12% Similarity=0.106 Sum_probs=28.8 Q ss_pred CCHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEE Q ss_conf 75222783117888874421488872277898715 Q gi|254780459|r 2 AKPELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSW 36 (129) Q Consensus 2 aK~elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~ 36 (129) +++.|-.-..|+.|+++|= |-+..-.|..||..| T Consensus 4 ~~~~w~~~~~C~~C~~~F~-~~~rkhhCr~CG~~~ 37 (73) T 1vfy_A 4 TPADWIDSDACMICSKKFS-LLNRKHHCRSCGGVF 37 (73) T ss_dssp ---CCCCCSBCTTTCCBCB-TTBCCEECTTTCCEE T ss_pred CCCCCCCCCCCCCCCCCCC-CCCCEECCCCCCCEE T ss_conf 8888999951237898367-863102356679887 No 38 >>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* (A:1-266) Probab=78.69 E-value=1.2 Score=24.52 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=22.6 Q ss_pred HHCC-CCCCCCCCCEEEECCCCCCCCC--CCCC Q ss_conf 2278-3117888874421488872277--8987 Q gi|254780459|r 5 ELGT-KRTCPDTGKRFYDLNKQVIVSP--YTQN 34 (129) Q Consensus 5 elG~-KR~C~~Cg~KFYDlnk~PiiCP--~CG~ 34 (129) +.|- +++|++||+.|+-++.+--+|+ -|+. T Consensus 12 ~~gf~r~~C~~cg~~fwt~~~~r~~Cgd~pc~~ 44 (266) T 2zze_A 12 EEGWIRXXCXVCGXPFWTLDPDRETCGDPPCDE 44 (266) T ss_dssp HTTCEEEECTTTCCEEEESCTTCCSCSSTTTSC T ss_pred HCCCEEEECCCCCCCEECCCCCCCCCCCCCCCC T ss_conf 669356200136872004799867789899877 No 39 >>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} (L:) Probab=78.37 E-value=1.8 Score=23.37 Aligned_cols=32 Identities=22% Similarity=0.120 Sum_probs=26.5 Q ss_pred HHCCCCCCCCCCCEEEECCCCCCCCCCCCCEE Q ss_conf 22783117888874421488872277898715 Q gi|254780459|r 5 ELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSW 36 (129) Q Consensus 5 elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~ 36 (129) -|-..-+|-.||+++-==-++||-|..||.-+ T Consensus 17 ~~~v~YiCgeC~~~~~lk~~d~IrCreCG~RI 48 (63) T 3h0g_L 17 PATMIYLCADCGARNTIQAKEVIRCRECGHRV 48 (63) T ss_dssp --CCCCBCSSSCCBCCCCSSSCCCCSSSCCCC T ss_pred CCCEEEECCCCCCCCEECCCCCEECCCCCCEE T ss_conf 86369886558984274899987827288686 No 40 >>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} (A:51-605) Probab=78.03 E-value=0.54 Score=26.61 Aligned_cols=27 Identities=11% Similarity=0.064 Sum_probs=22.3 Q ss_pred CCCCCCCCEEEECCCCC-CCCCCCCCEE Q ss_conf 11788887442148887-2277898715 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQV-IVSPYTQNSW 36 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~P-iiCP~CG~e~ 36 (129) -.|.+||...|=+.+.. =.||.||.+- T Consensus 491 ~~C~~cg~~g~~~~~~~~~~CP~Cgs~~ 518 (555) T 1h7b_A 491 DKCFTCGSTHEMTPTENGFVCSICGETD 518 (555) T ss_dssp EET------------------------- T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 7665667666724577788799988877 No 41 >>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi} (A:) Probab=77.75 E-value=0.91 Score=25.22 Aligned_cols=23 Identities=13% Similarity=0.406 Sum_probs=17.6 Q ss_pred CEEEECCCC--CCCCCCCCCEECHH Q ss_conf 744214888--72277898715323 Q gi|254780459|r 17 KRFYDLNKQ--VIVSPYTQNSWPLA 39 (129) Q Consensus 17 ~KFYDlnk~--PiiCP~CG~e~~~~ 39 (129) .-|+.|.|. +++|||||.-|... T Consensus 29 rVyi~ld~~~~~v~C~YCg~rfv~~ 53 (67) T 2jrr_A 29 RVWLQIPEDTGWVECPYCDCKYVLK 53 (67) T ss_dssp EEEEECCTTTSEEEETTTTEEEEET T ss_pred EEEEECCCCCCEEECCCCCCEEEEC T ss_conf 8999846999979888888898977 No 42 >>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubredoxin-like, electron transport; 1.63A {Desulfovibrio vulgaris} (A:149-191) Probab=77.70 E-value=1.1 Score=24.65 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=21.0 Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCE Q ss_conf 8311788887442148887227789871 Q gi|254780459|r 8 TKRTCPDTGKRFYDLNKQVIVSPYTQNS 35 (129) Q Consensus 8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~e 35 (129) ++=+|..||--|+- ..-|-+||.||.- T Consensus 6 ~~W~C~~CGyi~~G-~~aP~~CPvC~~~ 32 (43) T 1lko_A 6 TKWRCRNCGYVHEG-TGAPELCPACAHP 32 (43) T ss_dssp EEEEETTTCCEEEE-EECCSBCTTTCCB T ss_pred CEEECCCCCCEEEC-CCCCCCCCCCCCC T ss_conf 54788999862018-9998859899996 No 43 >>2j6a_A Protein TRM112; translation termination, methyltransferase, transferase, ERF1, nuclear protein, protein methylation; 1.7A {Saccharomyces cerevisiae} (A:) Probab=77.03 E-value=0.84 Score=25.43 Aligned_cols=12 Identities=0% Similarity=0.011 Sum_probs=8.1 Q ss_pred CCCCCCCCEECH Q ss_conf 227789871532 Q gi|254780459|r 27 IVSPYTQNSWPL 38 (129) Q Consensus 27 iiCP~CG~e~~~ 38 (129) ++||.||..|++ T Consensus 110 LvCp~cgr~fpI 121 (141) T 2j6a_A 110 MKCRNCGHIYYI 121 (141) T ss_dssp EECTTTCCEEEE T ss_pred EECCCCCCCCCC T ss_conf 887999988213 No 44 >>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} (A:1-260) Probab=76.09 E-value=1.5 Score=23.88 Aligned_cols=29 Identities=24% Similarity=0.551 Sum_probs=22.1 Q ss_pred HHCC-CCCCCCCCCEEEECCCCCCCCC--CCC Q ss_conf 2278-3117888874421488872277--898 Q gi|254780459|r 5 ELGT-KRTCPDTGKRFYDLNKQVIVSP--YTQ 33 (129) Q Consensus 5 elG~-KR~C~~Cg~KFYDlnk~PiiCP--~CG 33 (129) +.|- +++|++||..|+=++..--+|+ -|+ T Consensus 15 ~~g~~rk~C~~cg~~fwt~~~~r~~cgd~pc~ 46 (260) T 2ztg_A 15 ENGFVRKRCPKCGKHFWTADPEREICGDPPCE 46 (260) T ss_dssp TTTCEEECCCSSSSCEEECCSSCCCCCSSSSC T ss_pred HCCCEECCCCCCCCCEECCCCCCCCCCCCCCC T ss_conf 47914133765687400469885778989998 No 45 >>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious disease, electron transport; NMR {Mycobacterium tuberculosis} (A:) Probab=75.69 E-value=1.7 Score=23.53 Aligned_cols=28 Identities=11% Similarity=0.057 Sum_probs=16.9 Q ss_pred CCCCCCCCCCEEEECC--------------CCCC--CCCCCCCE Q ss_conf 8311788887442148--------------8872--27789871 Q gi|254780459|r 8 TKRTCPDTGKRFYDLN--------------KQVI--VSPYTQNS 35 (129) Q Consensus 8 ~KR~C~~Cg~KFYDln--------------k~Pi--iCP~CG~e 35 (129) .+-+|+.||--|---- .-|- +||-||+. T Consensus 26 ~~~~C~~CgyiYd~~~Gd~~~~i~pGT~f~~lP~~w~CPvC~~~ 69 (81) T 2kn9_A 26 KLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAA 69 (81) T ss_dssp CEEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCC T ss_pred CEEECCCCCEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC T ss_conf 85984999949776668846686989975679988779599895 No 46 >>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} (A:139-190) Probab=75.28 E-value=1.6 Score=23.73 Aligned_cols=32 Identities=16% Similarity=0.109 Sum_probs=22.1 Q ss_pred CCCCCCCCCEEEE---------CC-CCCCCCCCCCCEECHHH Q ss_conf 3117888874421---------48-88722778987153233 Q gi|254780459|r 9 KRTCPDTGKRFYD---------LN-KQVIVSPYTQNSWPLAY 40 (129) Q Consensus 9 KR~C~~Cg~KFYD---------ln-k~PiiCP~CG~e~~~~~ 40 (129) +-.|++|+++|=- .+ ..+..||.||..+-|.. T Consensus 6 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~p~C~~Cgg~lrPdV 47 (52) T 1q14_A 6 HCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELVKPAI 47 (52) T ss_dssp EEEETTTCCEECTHHHHHHTTSSSCSCCCBCTTTCCBEEEEE T ss_pred CCEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCCE T ss_conf 212088898279899987765366677888888899805778 No 47 >>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} (A:) Probab=75.27 E-value=1.8 Score=23.44 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=22.8 Q ss_pred CCCCCCCCCC-EEEECCCCCCCCCCCCCEE Q ss_conf 8311788887-4421488872277898715 Q gi|254780459|r 8 TKRTCPDTGK-RFYDLNKQVIVSPYTQNSW 36 (129) Q Consensus 8 ~KR~C~~Cg~-KFYDlnk~PiiCP~CG~e~ 36 (129) ++|.||.||. -|-=--++-..|=+||-.+ T Consensus 17 lrk~Cp~Cg~GvfmA~H~dR~~CGKCg~T~ 46 (55) T 2k4x_A 17 KHRFCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55) T ss_dssp SSCCCTTTTTTCCCEECSSEEECTTTCCCE T ss_pred ECCCCCCCCCCEEEEECCCCCCCCCCCCEE T ss_conf 357596999947741259977644765607 No 48 >>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens} (A:) Probab=75.21 E-value=2.1 Score=22.95 Aligned_cols=29 Identities=10% Similarity=-0.010 Sum_probs=19.2 Q ss_pred CCCCCCC--CCCEEE--EC----CCCCCCCCCCCCEE Q ss_conf 8311788--887442--14----88872277898715 Q gi|254780459|r 8 TKRTCPD--TGKRFY--DL----NKQVIVSPYTQNSW 36 (129) Q Consensus 8 ~KR~C~~--Cg~KFY--Dl----nk~PiiCP~CG~e~ 36 (129) ..|-||. |+.-+. .. ...+++||+||..| T Consensus 24 ~~~~CP~~~C~~~~~~~~~~~~~~~~~~~c~~C~~~f 60 (80) T 2jmo_A 24 GGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAF 60 (80) T ss_dssp SSCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCE T ss_pred CCEECCCCCCCEEEEECCCCCCCCCCCCEECCCCCEE T ss_conf 3968999898978996698766555664408899478 No 49 >>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=74.48 E-value=1.6 Score=23.78 Aligned_cols=31 Identities=13% Similarity=0.064 Sum_probs=25.3 Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCCEEC Q ss_conf 7831178888744214888722778987153 Q gi|254780459|r 7 GTKRTCPDTGKRFYDLNKQVIVSPYTQNSWP 37 (129) Q Consensus 7 G~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~ 37 (129) ..-+.|..|+++|-=|-+.--.|..||..|= T Consensus 23 ~~~~~C~~C~~~F~~l~~rkh~Cr~CG~~~C 53 (76) T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLVC 53 (76) T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEECC T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 5898380119600484779885255988068 No 50 >>1twf_B DNA-directed RNA polymerase II 140 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} (B:1155-1224) Probab=74.18 E-value=1.7 Score=23.52 Aligned_cols=26 Identities=19% Similarity=0.143 Sum_probs=21.5 Q ss_pred CCCCCCCCEE--EECCCCCCCCCCCCCE Q ss_conf 1178888744--2148887227789871 Q gi|254780459|r 10 RTCPDTGKRF--YDLNKQVIVSPYTQNS 35 (129) Q Consensus 10 R~C~~Cg~KF--YDlnk~PiiCP~CG~e 35 (129) .+|..||.-- |+.++.-..||.||.. T Consensus 7 ~VC~~CG~i~~~~~~~~~~~~C~~C~~~ 34 (70) T 1twf_B 7 HICGICGLMTVIAKLNHNQFECKGCDNK 34 (70) T ss_dssp EEESSSCSSCCEEETTTTEEEBTTTTBS T ss_pred EECCCCCCEEEEECCCCCCEEECCCCCC T ss_conf 4003777468874144363170577788 No 51 >>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1} (A:) Probab=73.76 E-value=0.97 Score=25.02 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=22.2 Q ss_pred CCCCCCCCCCEEEECCC----------------------------CCCCCCCCCCEECHH Q ss_conf 83117888874421488----------------------------872277898715323 Q gi|254780459|r 8 TKRTCPDTGKRFYDLNK----------------------------QVIVSPYTQNSWPLA 39 (129) Q Consensus 8 ~KR~C~~Cg~KFYDlnk----------------------------~PiiCP~CG~e~~~~ 39 (129) ---.||.|.....=... --++||.||..|++. T Consensus 7 diLaCP~ck~~L~l~~~~~~~~~~~~~~~g~~~~~~~~~~~ei~~g~L~C~~c~~~YPI~ 66 (97) T 2k5r_A 7 HLLCSPDTRQPLSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRKQVFRIE 66 (97) T ss_dssp SSCCCCTTSSCCEECCHHHHHHHHHHHHHTCCBCTTSCBCCCCCSEEEECTTSCEEEEEE T ss_pred HHHCCCCCCCCCEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCEEEECC T ss_conf 571787989913564532200123332011001223332244024848757648562443 No 52 >>2waq_B DNA-directed RNA polymerase RPO2 subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_B 2pmz_B 3hkz_B (B:1056-1131) Probab=73.62 E-value=2.1 Score=22.93 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=21.2 Q ss_pred CCCCCCCCEEE-ECCCCCCCCCCCCCE Q ss_conf 11788887442-148887227789871 Q gi|254780459|r 10 RTCPDTGKRFY-DLNKQVIVSPYTQNS 35 (129) Q Consensus 10 R~C~~Cg~KFY-Dlnk~PiiCP~CG~e 35 (129) .+|..||.-.| +.++.-..||.||+. T Consensus 7 ~VC~~CG~i~~~~~~~~~~~C~~C~~~ 33 (76) T 2waq_B 7 YVCDQCGYIGWYDKNKNKYVCPIHGDK 33 (76) T ss_dssp EECSSSCCCCCCCSSSSCCCCTTCSSS T ss_pred EECCCCCCEEEEECCCCCEECCCCCCC T ss_conf 304677866888535871467635887 No 53 >>2j01_6 50S ribosomal protein L33; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} (6:) Probab=72.51 E-value=2.4 Score=22.60 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=25.7 Q ss_pred CCCHH-HCCCCCCCCCCCEEEECCCCCC----------CCCCCCCE Q ss_conf 97522-2783117888874421488872----------27789871 Q gi|254780459|r 1 MAKPE-LGTKRTCPDTGKRFYDLNKQVI----------VSPYTQNS 35 (129) Q Consensus 1 MaK~e-lG~KR~C~~Cg~KFYDlnk~Pi----------iCP~CG~e 35 (129) |||.- -..+-.|..||.+||=-.|.+- -||.|+.- T Consensus 1 Mak~~r~~i~L~ct~c~~~nY~T~KN~~~~~erLelkKycp~c~kH 46 (54) T 2j01_6 1 MASEVRIKLLLECTECKRRNYATEKNKRNTPNKLELRKYCPWCRKH 46 (54) T ss_dssp --------CCCCCCCTTSCCCCCCCCCTTSSCSSCCCCCCCSSSCC T ss_pred CCCCCEEEEEEEECCCCCCCEEECCCCCCCCCEEEEECCCCCCCCE T ss_conf 9877523699985377788734977778896626897628777884 No 54 >>2j01_5 50S ribosomal protein L32; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} (5:) Probab=72.29 E-value=2.3 Score=22.70 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=15.9 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCC Q ss_conf 1178888744214888722778987 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQVIVSPYTQN 34 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~PiiCP~CG~ 34 (129) -.||+||. +.+.=-+||+||. T Consensus 31 ~~C~~cG~----~~~pH~vC~~CG~ 51 (60) T 2j01_5 31 VPCPECKA----MKPPHTVCPECGY 51 (60) T ss_dssp BCCSSSSS----CBCTTCBCTTTCC T ss_pred EECCCCCC----CCCCEEECCCCCC T ss_conf 68999998----2066068798981 No 55 >>1dx8_A Rubredoxin; zinc-substitution; NMR {Guillardia theta} (A:) Probab=72.00 E-value=2.3 Score=22.74 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=17.6 Q ss_pred CCCCCCCCCCEEE--------------ECCCCCC--CCCCCCCE Q ss_conf 8311788887442--------------1488872--27789871 Q gi|254780459|r 8 TKRTCPDTGKRFY--------------DLNKQVI--VSPYTQNS 35 (129) Q Consensus 8 ~KR~C~~Cg~KFY--------------Dlnk~Pi--iCP~CG~e 35 (129) .|-+|..||-.|= -|..-|- +||-||+. T Consensus 6 ~~y~C~~CgyiYd~~~Gd~~~gI~pGT~F~~LPddw~CP~Cga~ 49 (70) T 1dx8_A 6 GKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSP 49 (70) T ss_dssp SCEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCB T ss_pred CEEECCCCCCEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC T ss_conf 70782999908784447845687989996898898789399896 No 56 >>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} (A:) Probab=71.81 E-value=2 Score=23.12 Aligned_cols=28 Identities=21% Similarity=0.160 Sum_probs=18.9 Q ss_pred CCCCCCCCCCCEEEECCC---------------CCC--CCCCCCCE Q ss_conf 783117888874421488---------------872--27789871 Q gi|254780459|r 7 GTKRTCPDTGKRFYDLNK---------------QVI--VSPYTQNS 35 (129) Q Consensus 7 G~KR~C~~Cg~KFYDlnk---------------~Pi--iCP~CG~e 35 (129) .++-+|+.||-. ||-.+ -|- +||-||+- T Consensus 33 ~~~~~C~~Cgyi-Ydp~~Gd~~~~i~pGT~f~~lP~~w~CP~C~~~ 77 (87) T 1s24_A 33 YLKWICITCGHI-YDEALGDEAEGFTPGTRFEDIPDDWCCPDCGAT 77 (87) T ss_dssp CCEEEETTTTEE-EETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCC T ss_pred CCEEECCCCCCE-ECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC T ss_conf 644889999918-765657745686989986678888768599895 No 57 >>3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} (B:1143-1210) Probab=71.76 E-value=2.2 Score=22.81 Aligned_cols=27 Identities=19% Similarity=0.103 Sum_probs=21.4 Q ss_pred CCCCCCCCCE-EEECCCCCCCCCCCCCE Q ss_conf 3117888874-42148887227789871 Q gi|254780459|r 9 KRTCPDTGKR-FYDLNKQVIVSPYTQNS 35 (129) Q Consensus 9 KR~C~~Cg~K-FYDlnk~PiiCP~CG~e 35 (129) =.+|..||.- +++.++....||.||.. T Consensus 7 ~~VC~~CG~~~~~~~~~~~~~C~~C~~~ 34 (68) T 3h0g_B 7 VIVCDICGLIAIASYKKDSYECRSCQNR 34 (68) T ss_dssp EEEESSSCCBCCCCSSSCCCCCTTTCCS T ss_pred EEECCCCCCEEEECCCCCCEECCCCCCC T ss_conf 3503677876540244685565602389 No 58 >>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae} (A:156-239) Probab=71.54 E-value=0.77 Score=25.64 Aligned_cols=32 Identities=16% Similarity=0.176 Sum_probs=23.3 Q ss_pred CCCCCCCCCEE-------EECCCCCCCCCCCCCEECHHH Q ss_conf 31178888744-------214888722778987153233 Q gi|254780459|r 9 KRTCPDTGKRF-------YDLNKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 9 KR~C~~Cg~KF-------YDlnk~PiiCP~CG~e~~~~~ 40 (129) .-+|.+||.+| .=+...|..|+.|+..+.+.. T Consensus 6 ~~~C~~Cg~~~~~~~i~~~i~~~~~p~C~~c~~~~~~~~ 44 (84) T 2hjh_A 6 TATCVTCHWNLPGERIFNKIRNLELPLCPYCYKKRREYF 44 (84) T ss_dssp EEEETTTCCEEEGGGGHHHHHTTCCCBCTTTHHHHHHHC T ss_pred EEEECCCCCCCCHHHHHHHHHCCCCCCCCCHHHHCCCCC T ss_conf 378756798777899998885268998940111000136 No 59 >>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=70.94 E-value=3.1 Score=21.92 Aligned_cols=35 Identities=17% Similarity=0.103 Sum_probs=25.8 Q ss_pred CCHHHC---CCCCCCCCCCEEEECCCCCCCCCCCCCEEC Q ss_conf 752227---831178888744214888722778987153 Q gi|254780459|r 2 AKPELG---TKRTCPDTGKRFYDLNKQVIVSPYTQNSWP 37 (129) Q Consensus 2 aK~elG---~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~ 37 (129) +++.|- .-..|+.|+++|-=|+| --.|..||..|= T Consensus 4 ~~~~W~p~~~~~~C~~C~~~F~~~~r-rhhCr~CG~v~C 41 (84) T 1x4u_A 4 GSSGRYPTNNFGNCTGCSATFSVLKK-RRSCSNCGNSFC 41 (84) T ss_dssp CCCCSCSCCCCSSCSSSCCCCCSSSC-CEECSSSCCEEC T ss_pred CCCCCCCCCCCCCCCCCCCEECCCCC-CCCCCCCCCEEC T ss_conf 87786986373967486991007745-574546799628 No 60 >>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (Z:) Probab=70.64 E-value=2 Score=23.07 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=17.0 Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCC Q ss_conf 831178888744214888722778987 Q gi|254780459|r 8 TKRTCPDTGKRFYDLNKQVIVSPYTQN 34 (129) Q Consensus 8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~ 34 (129) +=-.||+||.- .+.=-+||+||. T Consensus 29 ~l~~C~~cG~~----~~pH~vC~~CG~ 51 (60) T 2zjr_Z 29 NLTECPQCHGK----KLSHHICPNCGY 51 (60) T ss_dssp CCEECTTTCCE----ECTTBCCTTTCB T ss_pred CEEECCCCCCC----CCCEEECCCCCC T ss_conf 61588999997----466067698881 No 61 >>2qiz_A Ubiquitin conjugation factor E4; helical hairpin, ligase; 2.56A {Saccharomyces cerevisiae} PDB: 2qj0_A (A:908-982) Probab=70.29 E-value=1.9 Score=23.27 Aligned_cols=19 Identities=11% Similarity=0.186 Sum_probs=10.3 Q ss_pred ECCCCCCCCCCCCCEECHH Q ss_conf 1488872277898715323 Q gi|254780459|r 21 DLNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 21 Dlnk~PiiCP~CG~e~~~~ 39 (129) ++-++|+++|.||+.|-.. T Consensus 6 ~~~~dpv~~~~CgH~fc~~ 24 (75) T 2qiz_A 6 TIMKDPVILPASKMNIDRS 24 (75) T ss_dssp SBCSSEEECTTTCCEEEHH T ss_pred HHHHCCCCCCCCCCEECHH T ss_conf 6752687389999847699 No 62 >>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {} (A:) Probab=68.82 E-value=2.9 Score=22.09 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=16.0 Q ss_pred CCCCCCCCCCEEEECCC---------------CCC--CCCCCCCE Q ss_conf 83117888874421488---------------872--27789871 Q gi|254780459|r 8 TKRTCPDTGKRFYDLNK---------------QVI--VSPYTQNS 35 (129) Q Consensus 8 ~KR~C~~Cg~KFYDlnk---------------~Pi--iCP~CG~e 35 (129) .|-+|+.||--| |-.+ -|- +||-||+. T Consensus 2 ~k~~C~~CgyiY-d~~~Gd~~~~i~pGT~F~~LP~dw~CP~C~a~ 45 (54) T 4rxn_A 2 KKYTCTVCGYIY-DPEDGDPDDGVNPGTDFKDIPDDWVCPLCGVG 45 (54) T ss_dssp CCEEETTTCCEE-CTTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB T ss_pred CCEECCCCCCEE-CCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC T ss_conf 965919999288-85547845687989996888998899399894 No 63 >>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei} (A:72-121) Probab=68.69 E-value=2.1 Score=22.99 Aligned_cols=29 Identities=17% Similarity=0.158 Sum_probs=17.8 Q ss_pred CCCCCCCCC------EEEECCC--CCCCCCCCCCEEC Q ss_conf 311788887------4421488--8722778987153 Q gi|254780459|r 9 KRTCPDTGK------RFYDLNK--QVIVSPYTQNSWP 37 (129) Q Consensus 9 KR~C~~Cg~------KFYDlnk--~PiiCP~CG~e~~ 37 (129) |--|++||- |+=.+-+ .--.||+||.... T Consensus 7 tikC~nCgyee~~Tvk~~~~e~~~~~~~CPkCgs~l~ 43 (50) T 3ir9_A 7 TTKCSVCGYENKWTRRWKPGEPAPAAGNCPKCGSSLE 43 (50) T ss_dssp EEEESSSSCEEEEEECCCC--CCCCCCBCTTTCCBEE T ss_pred EEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHH T ss_conf 9975898726899970473223433456855563022 No 64 >>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} (A:) Probab=68.01 E-value=3.5 Score=21.62 Aligned_cols=30 Identities=7% Similarity=-0.020 Sum_probs=22.9 Q ss_pred CCCCCCCCEEEECCC----CCCCCCCCCCEECHH Q ss_conf 117888874421488----872277898715323 Q gi|254780459|r 10 RTCPDTGKRFYDLNK----QVIVSPYTQNSWPLA 39 (129) Q Consensus 10 R~C~~Cg~KFYDlnk----~PiiCP~CG~e~~~~ 39 (129) -.|++|+.++.-.+. ....||.||....|. T Consensus 122 ~~C~~c~~~~~~~~~~~~~~~~~c~~c~g~lkP~ 155 (249) T 1m2k_A 122 VRCTSCNNSFEVESAPKIPPLPKCDKCGSLLRPG 155 (249) T ss_dssp EEESSSSCEEECSSCCCSSSCCBCSSSSSBEEEE T ss_pred EEECCCCCEEEHHHHCCCCCCCCCCCCCCEEECC T ss_conf 8989989873312201168999865589980236 No 65 >>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A 1rwd_A 1qcv_A 2pve_A 2pvx_A 2rdv_A 1rdv_A 1rb9_A* 2qkz_A 2ql0_A ... (A:) Probab=67.07 E-value=3.3 Score=21.75 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=15.1 Q ss_pred CCCCCCCCCEEEECCC---------------CCC--CCCCCCCE Q ss_conf 3117888874421488---------------872--27789871 Q gi|254780459|r 9 KRTCPDTGKRFYDLNK---------------QVI--VSPYTQNS 35 (129) Q Consensus 9 KR~C~~Cg~KFYDlnk---------------~Pi--iCP~CG~e 35 (129) |-+|+.||--| |-.+ -|- +||-||+- T Consensus 2 ky~C~~CgyvY-d~~~Gd~~~~i~pGT~F~~lP~dw~CP~C~a~ 44 (52) T 1yk4_A 2 KLSCKICGYIY-DEDEGDPDNGISPGTKFEDLPDDWVCPLCGAP 44 (52) T ss_dssp EEEESSSSCEE-ETTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB T ss_pred CCCCCCCCEEE-CCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC T ss_conf 55869999487-86657846687999997898998899399895 No 66 >>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} (A:) Probab=66.67 E-value=3.9 Score=21.33 Aligned_cols=28 Identities=14% Similarity=0.184 Sum_probs=16.3 Q ss_pred CCCCCCCCCCEEE--------------ECCCCCC--CCCCCCCE Q ss_conf 8311788887442--------------1488872--27789871 Q gi|254780459|r 8 TKRTCPDTGKRFY--------------DLNKQVI--VSPYTQNS 35 (129) Q Consensus 8 ~KR~C~~Cg~KFY--------------Dlnk~Pi--iCP~CG~e 35 (129) .|-+|+.||-.|- -|..-|- +||-||+. T Consensus 2 ~~y~C~~CgyiYd~~~Gd~~~~i~pGT~F~~lP~~w~CP~C~a~ 45 (52) T 1e8j_A 2 DIYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGAS 45 (52) T ss_dssp CCEECSSSCCCCCTTTCCTTTTCCSSCCTTSSCTTCCCSSSCCC T ss_pred CEEECCCCCEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC T ss_conf 83791899908775547745687999987788998889599881 No 67 >>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, electron transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa} (B:) Probab=66.42 E-value=3.3 Score=21.80 Aligned_cols=27 Identities=22% Similarity=0.171 Sum_probs=16.4 Q ss_pred CCCCCCCCCCEEEECCC---------------CCC--CCCCCCCE Q ss_conf 83117888874421488---------------872--27789871 Q gi|254780459|r 8 TKRTCPDTGKRFYDLNK---------------QVI--VSPYTQNS 35 (129) Q Consensus 8 ~KR~C~~Cg~KFYDlnk---------------~Pi--iCP~CG~e 35 (129) .|-+|+.||--| |=.+ -|- +||-||+. T Consensus 2 ~~y~C~~CgyiY-d~~~Gd~~~~I~pGT~F~~LP~~w~CP~C~a~ 45 (55) T 2v3b_B 2 RKWQCVVCGFIY-DEALGLPEEGIPAGTRWEDIPADWVCPDCGVG 45 (55) T ss_dssp CEEEETTTCCEE-ETTTCBTTTTBCTTCCGGGSCTTCCCTTTCCC T ss_pred CCEECCCCCCEE-CCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC T ss_conf 865939999188-95658845686989986788888679699996 No 68 >>2b4y_A NAD-dependent deacetylase sirtuin-5; histone deacetylase, structural genomics, structural genomics consortium, SGC, hydrolase; HET: APR EPE; 1.90A {Homo sapiens} (A:127-194) Probab=66.01 E-value=3 Score=22.06 Aligned_cols=32 Identities=13% Similarity=0.012 Sum_probs=21.2 Q ss_pred CCCCCCCCCEEEEC-------------------------CC-CCCCCCCCCCEECHHH Q ss_conf 31178888744214-------------------------88-8722778987153233 Q gi|254780459|r 9 KRTCPDTGKRFYDL-------------------------NK-QVIVSPYTQNSWPLAY 40 (129) Q Consensus 9 KR~C~~Cg~KFYDl-------------------------nk-~PiiCP~CG~e~~~~~ 40 (129) +-.|..||.+|.-. .+ ...-||.||..+-|.. T Consensus 6 ~~~C~~C~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~p~C~~CgG~lkPdV 63 (68) T 2b4y_A 6 KTRCTSCGVVAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHV 63 (68) T ss_dssp EEEETTTCCEEECCCSSSSGGGTTCCCCSTTCCCCCCCGGGSCBCCSTTTCCBEEEEE T ss_pred EEEECCCCCCHHHHHCCCCHHHHCCCCCCCCHHHHHCCHHHCCCCCCCCCCCEECCCE T ss_conf 7898888985002222105666055788865133203132255333356898747747 No 69 >>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} (A:1-112) Probab=65.85 E-value=3.3 Score=21.81 Aligned_cols=14 Identities=14% Similarity=0.159 Sum_probs=6.7 Q ss_pred EECCCCCCCCCCCC Q ss_conf 21488872277898 Q gi|254780459|r 20 YDLNKQVIVSPYTQ 33 (129) Q Consensus 20 YDlnk~PiiCP~CG 33 (129) ||-.|..-.|+.|| T Consensus 92 ~d~dk~~yHC~~C~ 105 (112) T 2dkt_A 92 FDKDKRQYHCESCG 105 (112) T ss_dssp EECSSSEEEETTTT T ss_pred CCCCCCCCCCCCCC T ss_conf 45787642468877 No 70 >>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} (A:1-29,A:132-142,A:275-437) Probab=65.41 E-value=2.4 Score=22.67 Aligned_cols=31 Identities=13% Similarity=0.034 Sum_probs=21.1 Q ss_pred CCCCCCCCCCCEE-EECCC------CCCCCCCCCCEEC Q ss_conf 7831178888744-21488------8722778987153 Q gi|254780459|r 7 GTKRTCPDTGKRF-YDLNK------QVIVSPYTQNSWP 37 (129) Q Consensus 7 G~KR~C~~Cg~KF-YDlnk------~PiiCP~CG~e~~ 37 (129) |.+..|++||..+ |-|++ .-..||+||.... T Consensus 96 r~~~~c~~c~~~~~~~~~~~~~~~~~~~~cp~cg~~l~ 133 (203) T 1dt9_A 96 RYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHE 133 (203) T ss_dssp CCCC---------CCCBCTTCSSCCCCCC--------- T ss_pred EEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCE T ss_conf 79996488874247741620023322256766686311 No 71 >>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A (A:) Probab=64.92 E-value=4.3 Score=21.11 Aligned_cols=29 Identities=10% Similarity=0.063 Sum_probs=23.3 Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCEEC Q ss_conf 831178888744214888722778987153 Q gi|254780459|r 8 TKRTCPDTGKRFYDLNKQVIVSPYTQNSWP 37 (129) Q Consensus 8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~ 37 (129) .-..|+.|+++|-=|+| .-.|-.||..|= T Consensus 18 ~~~~C~~C~~~F~~~~r-rhhCr~CG~v~C 46 (82) T 2yw8_A 18 EATHCRQCEKEFSISRR-KHHCRNCGHIFC 46 (82) T ss_dssp CCCBCTTTCCBCBTTBC-CEECTTTCCEEC T ss_pred CCCCCCCCCCCCCCCCC-CCCCHHCCCEEC T ss_conf 68947487981158533-511133097747 No 72 >>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:35-79) Probab=64.43 E-value=4 Score=21.26 Aligned_cols=24 Identities=21% Similarity=0.305 Sum_probs=15.4 Q ss_pred CCCCCEEEEC-----------CCCCCCCCCCCCEE Q ss_conf 8888744214-----------88872277898715 Q gi|254780459|r 13 PDTGKRFYDL-----------NKQVIVSPYTQNSW 36 (129) Q Consensus 13 ~~Cg~KFYDl-----------nk~PiiCP~CG~e~ 36 (129) +.||+.|--. +-.|-.|+.||..| T Consensus 10 ~~C~k~F~~~~~L~~H~r~HtgeKpy~C~~Cgk~F 44 (45) T 2dlk_A 10 PACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 44 (45) T ss_dssp TTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCC T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC T ss_conf 88986212133402301604898596896988988 No 73 >>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans R1} (A:83-244) Probab=62.31 E-value=5.3 Score=20.51 Aligned_cols=29 Identities=14% Similarity=0.139 Sum_probs=25.0 Q ss_pred CCCCCCCC---EEEECCCCCCCCCCCCCEECH Q ss_conf 11788887---442148887227789871532 Q gi|254780459|r 10 RTCPDTGK---RFYDLNKQVIVSPYTQNSWPL 38 (129) Q Consensus 10 R~C~~Cg~---KFYDlnk~PiiCP~CG~e~~~ 38 (129) +.|..||. .||.+..-=++|+.|+..+.. T Consensus 69 ~~C~~cg~~~~~~fs~~~gg~vc~~c~~~~~~ 100 (162) T 1u5k_A 69 ARCARCGAPDPEHPDPLGGQLLCSKCAALPPY 100 (162) T ss_dssp SBCTTTCCBSCCEECTTTSSEECTTTCSSCCC T ss_pred HHHHHCCCCCCCCCCCCCCEEECCCCCCCCCC T ss_conf 66750478887600321390454676556888 No 74 >>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-binding, ssDNA binding; 2.8A {Sulfolobus solfataricus} (A:112-268) Probab=61.83 E-value=4 Score=21.29 Aligned_cols=26 Identities=4% Similarity=-0.270 Sum_probs=18.6 Q ss_pred CCCCCCCCEEEECCC----------CCCCCCCCCCE Q ss_conf 117888874421488----------87227789871 Q gi|254780459|r 10 RTCPDTGKRFYDLNK----------QVIVSPYTQNS 35 (129) Q Consensus 10 R~C~~Cg~KFYDlnk----------~PiiCP~CG~e 35 (129) -.|..||.+||=... .|-.||+|+.- T Consensus 31 f~C~~C~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~ 66 (157) T 2vl6_A 31 YKHIHPDCMQEFEWPEDEEMPEVLEMPTICPKCGKP 66 (157) T ss_dssp EEEECTTCCCEEESSTTSCCCTTCCCCSBCTTTCCB T ss_pred EEEECCCCCEEEEECCCEECCCCCCCCCCCCCCCCC T ss_conf 999738983599968850337656788655667999 No 75 >>3gmt_A Adenylate kinase; ssgcid, ATP- binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} (A:120-200) Probab=61.69 E-value=4.3 Score=21.05 Aligned_cols=31 Identities=16% Similarity=0.151 Sum_probs=23.3 Q ss_pred HCCCCCCCCCCCEEEECCCC---CCCCCCCCCEE Q ss_conf 27831178888744214888---72277898715 Q gi|254780459|r 6 LGTKRTCPDTGKRFYDLNKQ---VIVSPYTQNSW 36 (129) Q Consensus 6 lG~KR~C~~Cg~KFYDlnk~---PiiCP~CG~e~ 36 (129) +--.|+|+.||.-|.-+... ..+|..|+... T Consensus 9 ~~~rri~~~~g~~y~~~~~~~~~~~~~~r~~~~l 42 (81) T 3gmt_A 9 XSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPL 42 (81) T ss_dssp HHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBC T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 9577777887564543337643322223356632 No 76 >>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} (A:) Probab=61.59 E-value=3.1 Score=21.98 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=24.4 Q ss_pred HHCCCCCCCCCCCEEEECCCCCCCCCCCCCEEC Q ss_conf 227831178888744214888722778987153 Q gi|254780459|r 5 ELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSWP 37 (129) Q Consensus 5 elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~ 37 (129) +....|.|.+|+++|.+=. --.||+|+..|= T Consensus 11 ~~~~s~~C~gC~~~~~~~~--~y~C~~C~~~FC 41 (59) T 1z60_A 11 EYNGERFCYGCQGELKDQH--VYVCAVCQNVFC 41 (59) T ss_dssp HHCSCCEETTTTEECTTSE--EECCTTTTCCBC T ss_pred HCCCCCCCCCCCCCCCCCC--CEECCCCCCCCC T ss_conf 1499888458788179986--269967898514 No 77 >>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus} (A:) Probab=61.38 E-value=3.4 Score=21.69 Aligned_cols=20 Identities=10% Similarity=0.102 Sum_probs=12.9 Q ss_pred CCCCCCCCCCCCCEECHHHH Q ss_conf 48887227789871532331 Q gi|254780459|r 22 LNKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 22 lnk~PiiCP~CG~e~~~~~~ 41 (129) |+-.---||.||.+|--.++ T Consensus 47 ~~~F~FKCP~CGEEFyG~~L 66 (95) T 2k5c_A 47 VEEFVFKCPVCGEEFYGKTL 66 (95) T ss_dssp HHHSEEECTTTCCEEETTSS T ss_pred HHHHHHCCCCCCHHHHCCCC T ss_conf 98770008866578872468 No 78 >>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} (A:) Probab=60.97 E-value=3.3 Score=21.77 Aligned_cols=17 Identities=12% Similarity=-0.001 Sum_probs=13.0 Q ss_pred CCCCCCCCCCCCCEECH Q ss_conf 48887227789871532 Q gi|254780459|r 22 LNKQVIVSPYTQNSWPL 38 (129) Q Consensus 22 lnk~PiiCP~CG~e~~~ 38 (129) +.-.|.+||-||+.+-- T Consensus 20 ~SdqPatCPlC~A~iRQ 36 (54) T 1yui_A 20 QSEQPATCPICYAVIRQ 36 (54) T ss_dssp TSSCCEECTTTCCEESS T ss_pred CCCCCCCCCHHHHHHHH T ss_conf 23599777048999998 No 79 >>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} (A:) Probab=60.97 E-value=3.7 Score=21.47 Aligned_cols=27 Identities=11% Similarity=0.241 Sum_probs=19.9 Q ss_pred CCCCCCCCEEEECCC-CCCCCC--CCCCEE Q ss_conf 117888874421488-872277--898715 Q gi|254780459|r 10 RTCPDTGKRFYDLNK-QVIVSP--YTQNSW 36 (129) Q Consensus 10 R~C~~Cg~KFYDlnk-~PiiCP--~CG~e~ 36 (129) |.||.|++.+--..= .=++|- .||+.| T Consensus 7 k~CP~C~~~i~K~~GCnhm~C~~~~C~~~F 36 (60) T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEF 36 (60) T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCC T ss_pred CCCCCCCCEEEECCCCCCEEECCCCCCCEE T ss_conf 699799987887789987796998999849 No 80 >>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} (A:) Probab=60.18 E-value=5.4 Score=20.49 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=17.2 Q ss_pred CCCCCCCCCCEEEECCCC--------C--CCCCCCCCE Q ss_conf 831178888744214888--------7--227789871 Q gi|254780459|r 8 TKRTCPDTGKRFYDLNKQ--------V--IVSPYTQNS 35 (129) Q Consensus 8 ~KR~C~~Cg~KFYDlnk~--------P--iiCP~CG~e 35 (129) .|-+|+.||--| |-.+- | -+||-||+. T Consensus 2 ~~y~C~~CgyiY-d~~~Gdgt~F~~LP~~w~CP~C~a~ 38 (45) T 6rxn_A 2 QKYVCNVCGYEY-DPAEHDNVPFDQLPDDWCCPVCGVS 38 (45) T ss_dssp CCEEETTTCCEE-CGGGGTTCCGGGSCTTCBCTTTCCB T ss_pred CCEEECCCCEEE-CCCCCCCCCHHHCCCCCCCCCCCCC T ss_conf 975908998187-7744799887788987789599892 No 81 >>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} (A:56-85,A:135-183) Probab=59.77 E-value=5 Score=20.68 Aligned_cols=34 Identities=15% Similarity=0.103 Sum_probs=20.6 Q ss_pred CCCCCCCCCCCEEEE--------CCCCC--CCCCCCCCEECHHH Q ss_conf 783117888874421--------48887--22778987153233 Q gi|254780459|r 7 GTKRTCPDTGKRFYD--------LNKQV--IVSPYTQNSWPLAY 40 (129) Q Consensus 7 G~KR~C~~Cg~KFYD--------lnk~P--iiCP~CG~e~~~~~ 40 (129) +..-+|.+||++|=- -.+.| ..||+||..+-|.. T Consensus 30 ~a~~~C~~C~~~y~~~~i~~~i~~~~vp~cp~C~~CgGiiKPDV 73 (79) T 1q1a_A 30 GAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELVKPAI 73 (79) T ss_dssp SEEEEETTTCCEECHHHHHHHHTCSSCCSCCBCTTTCCBEEEEE T ss_pred CCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCCE T ss_conf 64468389998289899988775346666887777899866728 No 82 >>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=59.63 E-value=4.2 Score=21.17 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=21.6 Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCCEECHHHH Q ss_conf 78311788887442148887227789871532331 Q gi|254780459|r 7 GTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 7 G~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~ 41 (129) -..-+||=|...| ++|++.|.||+.|--.-+ T Consensus 5 ~~~~~C~IC~~~~----~~pv~~~~CgH~fC~~Ci 35 (94) T 2yu4_A 5 SSGFTCPITKEEM----KKPVKNKVCGHTYEEDAI 35 (94) T ss_dssp SSCCBCTTTCSBC----SSEEEESSSCCEEEHHHH T ss_pred CCCCCCCCCCCHH----HCCEECCCCCCHHHHHHH T ss_conf 9774992619575----397062678657799999 No 83 >>2f4m_A Peptide N-glycanase; glycoproteins, ubiquitin-dependent protein degradation, nucleotide excision repair, peptide:N-glycanase; 1.85A {Mus musculus} (A:75-142) Probab=59.55 E-value=6.4 Score=20.03 Aligned_cols=44 Identities=9% Similarity=-0.037 Sum_probs=28.7 Q ss_pred HHCCCCCCCCCCCEEEECCC-CC-C--------------CCCCCCCEE------CHHHHHCCCCCC Q ss_conf 22783117888874421488-87-2--------------277898715------323310123443 Q gi|254780459|r 5 ELGTKRTCPDTGKRFYDLNK-QV-I--------------VSPYTQNSW------PLAYFEAPTSPE 48 (129) Q Consensus 5 elG~KR~C~~Cg~KFYDlnk-~P-i--------------iCP~CG~e~------~~~~~~~~~~~~ 48 (129) .|=.|-.|+.||.+--=... .| . .|..||+.. +|..|+..|++| T Consensus 3 ~Wvn~P~C~~Cg~~t~~~~~~~~pt~~E~~~ga~rVE~y~C~~C~~~~RFPRYn~p~kLLeTR~GR 68 (68) T 2f4m_A 3 RWVNNIVCSKCGGETRSRDEALLPNDDELKWGAKNVENHYCDACQLSNRFPRYNNPEKLLETRCGR 68 (68) T ss_dssp EECSSCCCTTTCCCCEECSSCBCCCSHHHHTTCCCEEEEEETTTTEEEEEECCCCHHHHHHHCEES T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEEEECCCCCCCEECCCCCCHHHHHHHCCCC T ss_conf 883798865468865025878898967853688568999758888721178769999999856856 No 84 >>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} (Z:) Probab=59.17 E-value=5.1 Score=20.62 Aligned_cols=29 Identities=17% Similarity=0.546 Sum_probs=21.2 Q ss_pred CCCCCCCCCCCEEEECCCC---CCCCCCCCCEEC Q ss_conf 7831178888744214888---722778987153 Q gi|254780459|r 7 GTKRTCPDTGKRFYDLNKQ---VIVSPYTQNSWP 37 (129) Q Consensus 7 G~KR~C~~Cg~KFYDlnk~---PiiCP~CG~e~~ 37 (129) -.|++||.||+.- +.|. -=.|-+||..|. T Consensus 58 ~aky~CpfCgk~~--vkR~a~GIW~C~~C~~~~A 89 (116) T 3cc2_Z 58 NEDHACPNCGEDR--VDRQGTGIWQCSYCDYKFT 89 (116) T ss_dssp HSCEECSSSCCEE--EEEEETTEEEETTTCCEEE T ss_pred HCCCCCCCCCCCE--EEEEEEEEEECCCCCCEEE T ss_conf 1684188889970--4778888878588899884 No 85 >>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=58.11 E-value=3.9 Score=21.32 Aligned_cols=19 Identities=5% Similarity=0.006 Sum_probs=11.8 Q ss_pred CCCCCCCCCCCEECHHHHH Q ss_conf 8872277898715323310 Q gi|254780459|r 24 KQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 24 k~PiiCP~CG~e~~~~~~~ 42 (129) +.|-+||+|...|.+...+ T Consensus 10 ~~~raCPkCN~~Fnl~dpL 28 (49) T 2e72_A 10 GGRKICPRCNAQFRVTEAL 28 (49) T ss_dssp SSCCCCTTTCCCCSSHHHH T ss_pred CCCEECCCCCCCEEHHHHH T ss_conf 8843076555400327764 No 86 >>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens} (A:) Probab=57.86 E-value=6.7 Score=19.90 Aligned_cols=33 Identities=12% Similarity=0.278 Sum_probs=22.3 Q ss_pred CCCCC-CCCEEEE----------CCCCCCCCCCCCCEECHHHHH Q ss_conf 11788-8874421----------488872277898715323310 Q gi|254780459|r 10 RTCPD-TGKRFYD----------LNKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 10 R~C~~-Cg~KFYD----------lnk~PiiCP~CG~e~~~~~~~ 42 (129) ..|++ |+.+|-= =.+.++.|++||..|....+. T Consensus 17 v~C~~~C~~~i~r~~l~~H~~~~C~~r~~~C~~C~~~~~~~~l~ 60 (76) T 2yuc_A 17 IPCPNRCPMKLSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYE 60 (76) T ss_dssp CBCTTCCSCBCCSSSSTTTTTTSCTTSCCCCSSSCCCCCHHHHH T ss_pred CCCCHHHCCHHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHH T ss_conf 55750215296898998771744897770699997405899999 No 87 >>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} (A:) Probab=57.68 E-value=7 Score=19.79 Aligned_cols=28 Identities=11% Similarity=0.151 Sum_probs=20.8 Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCEE Q ss_conf 83117888874421488872277898715 Q gi|254780459|r 8 TKRTCPDTGKRFYDLNKQVIVSPYTQNSW 36 (129) Q Consensus 8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~ 36 (129) .-..|+.|+++|==|+| --.|-.||..| T Consensus 8 ~~~~C~~C~~~F~~~~r-rhhCr~CG~~~ 35 (88) T 1wfk_A 8 MESRCYGCAVKFTLFKK-EYGCKNCGRAF 35 (88) T ss_dssp CCSBCTTTCCBCCSSSC-EEECSSSCCEE T ss_pred CCCCCCCCCCHHCCCCC-CCCCCCCCCCC T ss_conf 56818355951247454-62643039020 No 88 >>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} (A:137-176) Probab=57.62 E-value=7.6 Score=19.57 Aligned_cols=34 Identities=15% Similarity=0.091 Sum_probs=24.9 Q ss_pred CCCCCCCCCCE-EEECCCCCCCCCCCCCEECHHHHHCCCC Q ss_conf 83117888874-4214888722778987153233101234 Q gi|254780459|r 8 TKRTCPDTGKR-FYDLNKQVIVSPYTQNSWPLAYFEAPTS 46 (129) Q Consensus 8 ~KR~C~~Cg~K-FYDlnk~PiiCP~CG~e~~~~~~~~~~~ 46 (129) .+-+||.||.. =| =-.|=.||..|.|..|+.++- T Consensus 3 V~G~CP~C~~~~a~-----GDqCe~CG~~~~p~eLi~P~c 37 (40) T 1rqg_A 3 VIGTCPYCGAEDQK-----GDQCEVCGRPLTPEILINPRC 37 (40) T ss_dssp CCSBCSSSCCSCCC-----TTTCSSSCCCCCTTSSBSCBC T ss_pred EECCCCCCCCCCCC-----CCEECCCCCCCCCCCCCCCCC T ss_conf 02614654655455-----520023354332000345432 No 89 >>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} (A:316-426) Probab=57.11 E-value=4 Score=21.25 Aligned_cols=13 Identities=8% Similarity=-0.128 Sum_probs=10.4 Q ss_pred CCCCCCCCCCEEC Q ss_conf 8722778987153 Q gi|254780459|r 25 QVIVSPYTQNSWP 37 (129) Q Consensus 25 ~PiiCP~CG~e~~ 37 (129) -|-.||.||+.+. T Consensus 87 ~P~~CP~C~s~l~ 99 (111) T 1dgs_A 87 WPEACPECGHRLV 99 (111) T ss_dssp CCSBCTTTCCBCE T ss_pred CCCCCCCCCCEEE T ss_conf 9998999899801 No 90 >>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} (A:27-60) Probab=56.14 E-value=5.4 Score=20.46 Aligned_cols=21 Identities=5% Similarity=-0.017 Sum_probs=15.5 Q ss_pred CCCCCCCCCCCCEECHHHHHC Q ss_conf 888722778987153233101 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFEA 43 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~~ 43 (129) |-.|-.|+.||..|.-...+. T Consensus 1 nEKPf~C~~Cgk~F~R~d~L~ 21 (34) T 2adr_A 1 NEKPYPCGLCNRAFTRRDLLI 21 (34) T ss_dssp SSCSEECTTTCCEESSHHHHH T ss_pred CCCCCCCCCCCCCCCCHHHHH T ss_conf 332666785698907789999 No 91 >>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} (9:) Probab=55.68 E-value=8.2 Score=19.36 Aligned_cols=29 Identities=10% Similarity=0.267 Sum_probs=21.3 Q ss_pred CCCCCCCCCCCEEEECCCCC---CCCCCCCCEEC Q ss_conf 78311788887442148887---22778987153 Q gi|254780459|r 7 GTKRTCPDTGKRFYDLNKQV---IVSPYTQNSWP 37 (129) Q Consensus 7 G~KR~C~~Cg~KFYDlnk~P---iiCP~CG~e~~ 37 (129) -.|.+||.||.. -+.|.- =.|.+||..|. T Consensus 24 ~~ky~C~fCgk~--~vkR~a~GIW~C~~C~~~~A 55 (72) T 3jyw_9 24 HARYDCSFCGKK--TVKRGAAGIWTCSCCKKTVA 55 (72) T ss_dssp HSCBCCSSCCSS--CBSBCSSSCBCCSSSCCCCC T ss_pred CCCCCCCCCCCC--EEEEEEEEEEECCCCCCEEE T ss_conf 378409999997--35898888878899998871 No 92 >>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, metal-binding, nucleotide-binding; HET: CIT; 1.40A {Escherichia coli k-12} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A (A:152-192) Probab=55.62 E-value=5.7 Score=20.34 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=24.8 Q ss_pred CCCCCCCCCE-EEECCCCCCCCCCCCCEECHHHHHCCCC Q ss_conf 3117888874-4214888722778987153233101234 Q gi|254780459|r 9 KRTCPDTGKR-FYDLNKQVIVSPYTQNSWPLAYFEAPTS 46 (129) Q Consensus 9 KR~C~~Cg~K-FYDlnk~PiiCP~CG~e~~~~~~~~~~~ 46 (129) +-+||.||.. =| =-.|-+||..+.|..|+.++- T Consensus 4 ~G~CP~C~~~~a~-----GDqCe~CG~~~~p~eLi~P~c 37 (41) T 3h99_A 4 KGTCPKCKSPDQY-----GDNCEVCGATYSPTELIEPKS 37 (41) T ss_dssp EEECTTTCCSSEE-----TTBCTTTCCBCCGGGCEEEEE T ss_pred EEECCCCCCCCCC-----CCCCEECCCCCCHHHHCCCCC T ss_conf 4135777761006-----886632587698577307755 No 93 >>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} (A:) Probab=55.25 E-value=5.2 Score=20.55 Aligned_cols=35 Identities=11% Similarity=0.015 Sum_probs=23.2 Q ss_pred HHCCCCCCCCCCCEEEECCCCCCCCCCCCCEECHHHHHC Q ss_conf 227831178888744214888722778987153233101 Q gi|254780459|r 5 ELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEA 43 (129) Q Consensus 5 elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~ 43 (129) ++...-+||-|.. +-++|+++|.||+.|--.-+.+ T Consensus 18 ~~~~~~~C~IC~~----~~~~pv~~~~CgH~fC~~Ci~~ 52 (98) T 1wgm_A 18 DACDEFLDPIMST----LMCDPVVLPSSRVTVDRSTIAR 52 (98) T ss_dssp SCCTTTBCTTTCS----BCSSEEECTTTCCEEEHHHHHH T ss_pred CCHHHHCCCCHHH----HHHHHHHHHHHHHHHHHHHHHH T ss_conf 8907609837034----8876887211201744999999 No 94 >>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} (C:136-267) Probab=54.61 E-value=5.7 Score=20.32 Aligned_cols=31 Identities=19% Similarity=0.260 Sum_probs=20.0 Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCEECHHHHH Q ss_conf 83117888874421488872277898715323310 Q gi|254780459|r 8 TKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~ 42 (129) .--+||=|...|+ +|++++.||+.|--.-+. T Consensus 45 ~~~~CpIC~~~~~----~p~~~~~CgH~fC~~Ci~ 75 (132) T 3htk_C 45 IELTCPITCKPYE----APLISRKCNHVFDRDGIQ 75 (132) T ss_dssp CCSBCTTTSSBCS----SEEEESSSCCEEEHHHHH T ss_pred EEEECCCCCCHHH----CCCCCCCCCCHHHHHHHH T ss_conf 3678928170774----643356588768799999 No 95 >>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major} (A:1-52) Probab=54.19 E-value=8 Score=19.43 Aligned_cols=33 Identities=12% Similarity=0.001 Sum_probs=23.7 Q ss_pred CHHHC---CCCCCCCCCCEEEECCCCCCCCCCCCCEE Q ss_conf 52227---83117888874421488872277898715 Q gi|254780459|r 3 KPELG---TKRTCPDTGKRFYDLNKQVIVSPYTQNSW 36 (129) Q Consensus 3 K~elG---~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~ 36 (129) ++-|= .-..|+.|+++|-=|+| --.|-.||..| T Consensus 12 ~~~W~~d~~~~~C~~C~~~F~~~~r-khHCR~CG~vf 47 (52) T 1z2q_A 12 KGYWQEDEDAPACNGCGCVFTTTVR-RHHCRNCGYVL 47 (52) T ss_dssp CSCCCCTTTCCBCTTTCCBCCTTSC-CEECTTTCCEE T ss_pred CCCCCCCCCCCCCCCCCCEECCCCC-CCCCCCCCCEE T ss_conf 6748786658807688994057545-14256689785 No 96 >>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=52.06 E-value=1.7 Score=23.50 Aligned_cols=28 Identities=4% Similarity=0.107 Sum_probs=18.1 Q ss_pred CEEEECCCCCCCCCCCCCEECHHHHHCC Q ss_conf 7442148887227789871532331012 Q gi|254780459|r 17 KRFYDLNKQVIVSPYTQNSWPLAYFEAP 44 (129) Q Consensus 17 ~KFYDlnk~PiiCP~CG~e~~~~~~~~~ 44 (129) .+++.-.+..+.||.|.+.+.+..+... T Consensus 47 ~~~~~~~~~~~~CP~Cr~~~~~~~~~~~ 74 (88) T 2ct2_A 47 EKLLASSINGVRCPFCSKITRITSLTQL 74 (88) T ss_dssp HHHHHHCSSCBCCTTTCCCBCCSSTTTS T ss_pred HHHHHHCCCCCCCCCCCCEEECCCHHHC T ss_conf 9999968998699999986107783247 No 97 >>3jwp_A Transcriptional regulatory protein SIR2 homologue; malaria, transcription regulation, structural genomics, structural genomics consortium; HET: AMP PGE; 2.65A {Plasmodium falciparum} (A:124-175) Probab=51.02 E-value=9.2 Score=19.05 Aligned_cols=32 Identities=9% Similarity=-0.059 Sum_probs=21.9 Q ss_pred CCCCCCCCCEEE---------ECCC-CCCCCCCCCCEECHHH Q ss_conf 311788887442---------1488-8722778987153233 Q gi|254780459|r 9 KRTCPDTGKRFY---------DLNK-QVIVSPYTQNSWPLAY 40 (129) Q Consensus 9 KR~C~~Cg~KFY---------Dlnk-~PiiCP~CG~e~~~~~ 40 (129) +-.|..|+++|= .++. ..+.|+.||..+-|.. T Consensus 6 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~cc~Cgg~lrPdV 47 (52) T 3jwp_A 6 EAVCCTCNKIVKLNKIXLQKTSHFXHQLPPECPCGGIFKPNI 47 (52) T ss_dssp EEEETTTCCEEECCHHHHSTTSSTTTSSSCBCTTSCBEEEEE T ss_pred EEEECCCCCCCCCCHHHHCCCHHHCCCCCCCCCCCCCEEEEE T ss_conf 688788998743320011000010147898766677323227 No 98 >>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein kinase inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} (A:121-157) Probab=50.93 E-value=9.5 Score=18.97 Aligned_cols=11 Identities=9% Similarity=0.274 Sum_probs=5.7 Q ss_pred CCCCCCCEECH Q ss_conf 27789871532 Q gi|254780459|r 28 VSPYTQNSWPL 38 (129) Q Consensus 28 iCP~CG~e~~~ 38 (129) +||+||+.|.. T Consensus 14 ~c~~cG~~Yh~ 24 (37) T 3be4_A 14 THPASGRIYHV 24 (37) T ss_dssp ECTTTCCEEET T ss_pred CCCCCCCCCCC T ss_conf 67775341334 No 99 >>3k35_A Mono-ADP-ribosyltransferase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, structural genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens} (A:) Probab=50.23 E-value=7.5 Score=19.59 Aligned_cols=31 Identities=3% Similarity=0.008 Sum_probs=21.1 Q ss_pred CCCCCCCCCEEEE---------------CC-CCCCCCCCCCCEECHH Q ss_conf 3117888874421---------------48-8872277898715323 Q gi|254780459|r 9 KRTCPDTGKRFYD---------------LN-KQVIVSPYTQNSWPLA 39 (129) Q Consensus 9 KR~C~~Cg~KFYD---------------ln-k~PiiCP~CG~e~~~~ 39 (129) +-.|..|+.+|-- .. .....||.||...-|. T Consensus 138 ~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~C~~C~g~lrP~ 184 (318) T 3k35_A 138 VEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGELRDT 184 (318) T ss_dssp EEEETTTCCEEECSSCCSCCSSCEEEEECCC--------CCCEEEEC T ss_pred EEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 79989999863477755665135777656422356764468856897 No 100 >>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=50.09 E-value=7.7 Score=19.52 Aligned_cols=16 Identities=6% Similarity=0.050 Sum_probs=9.8 Q ss_pred CCCCCCCCCCCCEECH Q ss_conf 8887227789871532 Q gi|254780459|r 23 NKQVIVSPYTQNSWPL 38 (129) Q Consensus 23 nk~PiiCP~CG~e~~~ 38 (129) +..|-.|+.||..|.- T Consensus 7 gekp~~C~~Cgk~F~~ 22 (45) T 2epq_A 7 GEKPYSCPVCGLRFKR 22 (45) T ss_dssp SCCSSEETTTTEECSC T ss_pred CCCCEECCCCCCCCCC T ss_conf 7887866887764501 No 101 >>2owo_A DNA ligase; protein/DNA complex, ligase/DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli K12} (A:318-477) Probab=49.38 E-value=7.1 Score=19.73 Aligned_cols=30 Identities=13% Similarity=0.124 Sum_probs=16.3 Q ss_pred HCCCCCCCCCCCEEEECCC-CCCCCCC---CCCE Q ss_conf 2783117888874421488-8722778---9871 Q gi|254780459|r 6 LGTKRTCPDTGKRFYDLNK-QVIVSPY---TQNS 35 (129) Q Consensus 6 lG~KR~C~~Cg~KFYDlnk-~PiiCP~---CG~e 35 (129) |-.--.||+||+++---.. .-+.||+ |-+. T Consensus 85 ~~~p~~CPsCgs~l~~~~~~~~~~C~N~~~C~~q 118 (160) T 2owo_A 85 VVFPTHCPVCGSDVERVEGEAVARCTGGLICGAQ 118 (160) T ss_dssp CCCCSBCTTTCCBEEECTTCSCEEECCGGGCHHH T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHH T ss_conf 2024465555763344478635896698765899 No 102 >>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=49.09 E-value=3.5 Score=21.66 Aligned_cols=31 Identities=13% Similarity=0.209 Sum_probs=23.8 Q ss_pred CCCCCCCCEEEE---CCC-CCCCCCCCCCEECHHH Q ss_conf 117888874421---488-8722778987153233 Q gi|254780459|r 10 RTCPDTGKRFYD---LNK-QVIVSPYTQNSWPLAY 40 (129) Q Consensus 10 R~C~~Cg~KFYD---lnk-~PiiCP~CG~e~~~~~ 40 (129) -.|..||..|-- |.+ .|..|+.||..|.-.. T Consensus 19 ~~C~~C~k~f~~~s~l~~H~~~~c~~C~K~F~~~s 53 (73) T 2ctu_A 19 QKCSKCGIIFIRRSTLSRRKTPMCEKCRKDSCQEA 53 (73) T ss_dssp EECSSSCCEEECCCCCCCSSSCCCHHHHHTCSCCC T ss_pred ECCCCCCEEECCCCCCCCCCEEEEECCCCCCCCCC T ss_conf 03232210000012103321055502377512562 No 103 >>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protein structure initiative, midwest center for structural genomics; 2.00A {Nitrosomonas europaea atcc 19718} (A:1-37) Probab=48.84 E-value=9.2 Score=19.06 Aligned_cols=29 Identities=14% Similarity=0.279 Sum_probs=18.7 Q ss_pred CCCCCCCCCCCEEE-----ECCCCCCCCCCCCCE Q ss_conf 78311788887442-----148887227789871 Q gi|254780459|r 7 GTKRTCPDTGKRFY-----DLNKQVIVSPYTQNS 35 (129) Q Consensus 7 G~KR~C~~Cg~KFY-----Dlnk~PiiCP~CG~e 35 (129) |--+-|+.||..-= .=||--.|||.||+. T Consensus 1 ~~~kfC~~CG~~v~~~IP~GD~r~R~VC~~Cg~I 34 (37) T 3cng_A 1 GHXKFCSQCGGEVILRIPEGDTLPRYICPKCHTI 34 (37) T ss_dssp --CCBCTTTCCBCEEECCTTCSSCEEEETTTTEE T ss_pred CCCEECCCCCCCCCCCCCCCCCEEEEECCCCCCC T ss_conf 9762882337856135578886037656999970 No 104 >>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=48.17 E-value=9.1 Score=19.09 Aligned_cols=16 Identities=13% Similarity=0.256 Sum_probs=12.8 Q ss_pred CCCCCCCCCCCCCEEC Q ss_conf 4888722778987153 Q gi|254780459|r 22 LNKQVIVSPYTQNSWP 37 (129) Q Consensus 22 lnk~PiiCP~CG~e~~ 37 (129) +.|.-.-||+|+.-|- T Consensus 5 ~g~RA~KCPyCd~~F~ 20 (37) T 2elp_A 5 SSGRAMKCPYCDFYFM 20 (37) T ss_dssp CCCCCEECSSSSCEEC T ss_pred CCCCCCCCCCCHHHHH T ss_conf 6686314873047885 No 105 >>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} (A:) Probab=47.60 E-value=8.2 Score=19.37 Aligned_cols=33 Identities=21% Similarity=0.507 Sum_probs=23.5 Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCCEECHHHHHC Q ss_conf 7831178888744214888722778987153233101 Q gi|254780459|r 7 GTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEA 43 (129) Q Consensus 7 G~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~ 43 (129) |.=.+||=|.. +-++|+++|.||..|-..-+.+ T Consensus 1 gs~~~C~IC~~----~~~~pv~~~~CgH~fc~~Ci~~ 33 (61) T 2bay_A 1 GSHMLCAISGK----VPRRPVLSPKSRTIFEKSLLEQ 33 (61) T ss_dssp ---CCCTTTCS----CCSSEEEETTTTEEEEHHHHHH T ss_pred CCEEECCCCCC----HHHHHHCCCCCCCEECHHHHHH T ss_conf 98658049793----7874111125993853888877 No 106 >>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} (A:) Probab=47.58 E-value=7.6 Score=19.55 Aligned_cols=31 Identities=13% Similarity=0.020 Sum_probs=23.1 Q ss_pred HHHCCCCCCCCCCCEEEECCCCCCCCCCCCC Q ss_conf 2227831178888744214888722778987 Q gi|254780459|r 4 PELGTKRTCPDTGKRFYDLNKQVIVSPYTQN 34 (129) Q Consensus 4 ~elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~ 34 (129) ..+=.+++|+.|.-.=+.-+..+.+||.|+- T Consensus 6 i~~~~~~~C~~C~GtG~~~~~~~~~C~~C~G 36 (79) T 1exk_A 6 IRIPTLEECDVCHGSGAKPGTQPQTCPTCHG 36 (79) T ss_dssp CCCCCEEECGGGTTTSBCSSSCCEECTTTTT T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 9801076889981601189988723898778 No 107 >>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=47.47 E-value=8 Score=19.43 Aligned_cols=14 Identities=36% Similarity=0.733 Sum_probs=9.7 Q ss_pred CCCCCCCCCCCEEE Q ss_conf 78311788887442 Q gi|254780459|r 7 GTKRTCPDTGKRFY 20 (129) Q Consensus 7 G~KR~C~~Cg~KFY 20 (129) ++-+.|--||+||- T Consensus 7 ekthlcd~cgkkfk 20 (36) T 2elr_A 7 GKTHLCDMCGKKFK 20 (36) T ss_dssp CSSCBCTTTCCBCS T ss_pred CCCCHHHHHHHHHC T ss_conf 75215876603440 No 108 >>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} (A:) Probab=47.43 E-value=6.4 Score=20.02 Aligned_cols=29 Identities=10% Similarity=0.251 Sum_probs=20.3 Q ss_pred HH-CCCCCCCCCCCEEEECCCCCCCCCCCCCEEC Q ss_conf 22-7831178888744214888722778987153 Q gi|254780459|r 5 EL-GTKRTCPDTGKRFYDLNKQVIVSPYTQNSWP 37 (129) Q Consensus 5 el-G~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~ 37 (129) +| +....|..|+.-| +.-+.||-|+.+.. T Consensus 43 ~w~~g~yhC~~C~~~f----~~~a~CPdC~~~Le 72 (101) T 2jne_A 43 DQDNGHARCRSCGEFI----EMKALCPDCHQPLQ 72 (101) T ss_dssp EEETTEEEETTTCCEE----EEEEECTTTCSBCE T ss_pred EECCCCEECHHHHHHH----EEEEECCCCCCHHH T ss_conf 4548988815652112----04776876131899 No 109 >>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A* (A:1-124) Probab=47.02 E-value=8.6 Score=19.24 Aligned_cols=33 Identities=15% Similarity=0.111 Sum_probs=26.1 Q ss_pred CCCCCCCCCEEE--ECCCCCCCCCCCCCEECHHHH Q ss_conf 311788887442--148887227789871532331 Q gi|254780459|r 9 KRTCPDTGKRFY--DLNKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 9 KR~C~~Cg~KFY--Dlnk~PiiCP~CG~e~~~~~~ 41 (129) .-+||..|..+= .++..-|+||+.|..|.+..- T Consensus 46 ~n~CpH~g~~L~~g~~~~~~i~Cp~Hg~~f~~~gg 80 (124) T 3gke_A 46 LDICPHRFAPLSDGILVNGHLQCPYHGLEFDGGGQ 80 (124) T ss_dssp ESSCTTTCCCGGGCEEETTEEECTTTCCEECTTCC T ss_pred ECCCCCCCCCCCCCCCCCCEEEECCCCCEEECCCC T ss_conf 48578999872467210998982798748808997 No 110 >>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} (A:32-61) Probab=46.73 E-value=6.6 Score=19.95 Aligned_cols=13 Identities=8% Similarity=0.235 Sum_probs=9.3 Q ss_pred CCCCCCCCCCCEE Q ss_conf 8872277898715 Q gi|254780459|r 24 KQVIVSPYTQNSW 36 (129) Q Consensus 24 k~PiiCP~CG~e~ 36 (129) ..|.-|++||.-| T Consensus 2 ekpf~c~kcgk~y 14 (30) T 2dlq_A 2 EKPFECPKCGKCY 14 (30) T ss_dssp CCSCBCTTTCCBC T ss_pred CCCCCCCCCCCCC T ss_conf 2100111223210 No 111 >>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} (A:1-174) Probab=46.71 E-value=9.3 Score=19.02 Aligned_cols=33 Identities=24% Similarity=0.339 Sum_probs=25.7 Q ss_pred CCCCCCCCCEEEE----CCCCCCCCCCCCCEECHHHH Q ss_conf 3117888874421----48887227789871532331 Q gi|254780459|r 9 KRTCPDTGKRFYD----LNKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 9 KR~C~~Cg~KFYD----lnk~PiiCP~CG~e~~~~~~ 41 (129) .-+||..|+.... -++.-|+||+.|..|...-- T Consensus 81 ~n~CpH~g~~L~~g~~~~~~~~i~Cp~Hg~~f~~~g~ 117 (174) T 1z01_A 81 KDQCLHRGVRLSEKPTCFTKSTISCWYHGFTFDLETG 117 (174) T ss_dssp ESSCTTTCCCGGGSCCCSSTTEEECTTTCEEEETTTC T ss_pred ECCCCCCCCCCCCCCCCCCCCEEECCCCCCEEECCCC T ss_conf 4878899987126755575997973888868966898 No 112 >>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} (A:1-41) Probab=46.61 E-value=9.5 Score=18.98 Aligned_cols=19 Identities=0% Similarity=-0.134 Sum_probs=13.8 Q ss_pred CCCCCCCCCCCCEECHHHH Q ss_conf 8887227789871532331 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~ 41 (129) +-.|-.||.||..|.-... T Consensus 12 gekpy~C~~C~k~F~~~~~ 30 (41) T 2ct1_A 12 GEKPYECYICHARFTQSGT 30 (41) T ss_dssp CCCSEECTTTCCEESCHHH T ss_pred CCCCEECCCCCCCCCCHHH T ss_conf 9889489999973241254 No 113 >>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ protein, ATP-binding, DNA-binding; 4.35A {Sulfolobus solfataricus} (A:106-281) Probab=46.51 E-value=9.1 Score=19.09 Aligned_cols=26 Identities=4% Similarity=-0.247 Sum_probs=18.0 Q ss_pred CCCCCCCCEEEECC----------CCCCCCCCCCCE Q ss_conf 11788887442148----------887227789871 Q gi|254780459|r 10 RTCPDTGKRFYDLN----------KQVIVSPYTQNS 35 (129) Q Consensus 10 R~C~~Cg~KFYDln----------k~PiiCP~CG~e 35 (129) -.|..||..||=.. ..|..||.|+.- T Consensus 31 f~C~~C~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~ 66 (176) T 3f9v_A 31 YKHIHPDCMQEFEWPEDEEMPEVLEMPTICPKCGKP 66 (176) T ss_dssp CEEESSSCCCBCCSSCSSCCCSSCCCCSSCTTTCCC T ss_pred EEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC T ss_conf 887259970589957860337777888778888888 No 114 >>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=46.40 E-value=9.8 Score=18.89 Aligned_cols=19 Identities=0% Similarity=-0.202 Sum_probs=13.9 Q ss_pred CCCCCCCCCCCCEECHHHH Q ss_conf 8887227789871532331 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~ 41 (129) +..|-.||.||..|.-... T Consensus 6 gekp~~C~~C~k~F~~~s~ 24 (36) T 2elq_A 6 SGKPFKCSLCEYATRSKSN 24 (36) T ss_dssp CCCSEECSSSSCEESCHHH T ss_pred CCCCEECCCCCCCCCCCCC T ss_conf 9989876898835557535 No 115 >3h0n_A Protein Of Unknown Function Duf1470 (Yp_510353.1) {Jannaschia Sp. Ccs1} (A:) Probab=45.75 E-value=7.7 Score=19.53 Aligned_cols=34 Identities=15% Similarity=0.261 Sum_probs=24.9 Q ss_pred CCHHHCCCCCC--CCCCCEEEECCC--C-CCCCCCCCCE Q ss_conf 75222783117--888874421488--8-7227789871 Q gi|254780459|r 2 AKPELGTKRTC--PDTGKRFYDLNK--Q-VIVSPYTQNS 35 (129) Q Consensus 2 aK~elG~KR~C--~~Cg~KFYDlnk--~-PiiCP~CG~e 35 (129) .-++|+.=|+| |.|+.-|||.-| + -==++.||+- T Consensus 138 ~~~~~~Rlr~C~ap~C~~~F~D~Srn~~RrWCsm~CGNR 176 (188) T 3h0n_A 138 GHQNVRRFGICNAHRCDRVYFDTSRNGTRQYCSLACQNR 176 (188) T ss_dssp HTTCGGGEEECCSTTCCCEEECCSSSCCCCCSSHHHHHH T ss_pred CCCCHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHH T ss_conf 178845631157879756888638668834147113238 No 116 >>2kfq_A FP1; protein, de novo protein; NMR {Synthetic} (A:) Probab=45.39 E-value=5.7 Score=20.32 Aligned_cols=11 Identities=9% Similarity=0.138 Sum_probs=6.8 Q ss_pred CCCCCCCEECH Q ss_conf 27789871532 Q gi|254780459|r 28 VSPYTQNSWPL 38 (129) Q Consensus 28 iCP~CG~e~~~ 38 (129) .||.|+.-|.- T Consensus 4 ~C~~C~KrF~R 14 (32) T 2kfq_A 4 ACPACPKRFMR 14 (32) T ss_dssp SSSSSCTTHHH T ss_pred CCCCCCCCCCC T ss_conf 47645553251 No 117 >>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} (B:) Probab=45.23 E-value=10 Score=18.79 Aligned_cols=32 Identities=3% Similarity=0.000 Sum_probs=22.2 Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCEECHHHHHCC Q ss_conf 311788887442148887227789871532331012 Q gi|254780459|r 9 KRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEAP 44 (129) Q Consensus 9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~~ 44 (129) .-.||=| |++-++|++.|.||+.|-..=+.+. T Consensus 22 ~~~C~IC----~~~~~~pv~~~~CgH~fC~~Ci~~~ 53 (117) T 1jm7_B 22 LLRCSRC----TNILREPVCLGGCEHIFCSNCVSDC 53 (117) T ss_dssp TTSCSSS----CSCCSSCBCCCSSSCCBCTTTGGGG T ss_pred CCCCCCC----CCCCCCCEEECCCCCHHHHHHHHHH T ss_conf 7998889----8300497276899987689999999 No 118 >>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} (C:1-27) Probab=45.01 E-value=9.2 Score=19.04 Aligned_cols=16 Identities=0% Similarity=-0.049 Sum_probs=11.9 Q ss_pred CCCCCCCCCCEECHHH Q ss_conf 8722778987153233 Q gi|254780459|r 25 QVIVSPYTQNSWPLAY 40 (129) Q Consensus 25 ~PiiCP~CG~e~~~~~ 40 (129) .|-.||.||..|.-.. T Consensus 2 kPy~C~~CgK~Fsr~~ 17 (27) T 1llm_C 2 KPFQCRICMRNFSRSD 17 (27) T ss_dssp CCEECTTTCCEESCHH T ss_pred CCCCCCCCCCCCCCHH T ss_conf 4957999886429799 No 119 >>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} (I:54-113) Probab=44.57 E-value=9.6 Score=18.95 Aligned_cols=12 Identities=8% Similarity=0.069 Sum_probs=5.2 Q ss_pred CCCCCCCCCCCC Q ss_conf 888722778987 Q gi|254780459|r 23 NKQVIVSPYTQN 34 (129) Q Consensus 23 nk~PiiCP~CG~ 34 (129) .|....||+||. T Consensus 16 ~~~~~~C~~Cg~ 27 (60) T 3h0g_I 16 PRSDKECPRCHQ 27 (60) T ss_dssp CBCCSCCSSSCC T ss_pred CCCCCCCCCCCC T ss_conf 603643744899 No 120 >>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} (A:) Probab=44.07 E-value=10 Score=18.77 Aligned_cols=10 Identities=10% Similarity=0.208 Sum_probs=5.0 Q ss_pred CCCCCCCEEC Q ss_conf 2778987153 Q gi|254780459|r 28 VSPYTQNSWP 37 (129) Q Consensus 28 iCP~CG~e~~ 37 (129) .||.||.-|. T Consensus 4 ~C~~C~k~F~ 13 (29) T 1rik_A 4 ACPECPKRFM 13 (29) T ss_dssp ECSSSSCEES T ss_pred CCCCCCCCCC T ss_conf 3776655321 No 121 >>1v54_F VI, cytochrome C oxidase polypeptide VB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} (F:37-98) Probab=43.78 E-value=15 Score=17.83 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=21.0 Q ss_pred CCCCEEEECCCC-CCCCCCCCCEECHH Q ss_conf 888744214888-72277898715323 Q gi|254780459|r 14 DTGKRFYDLNKQ-VIVSPYTQNSWPLA 39 (129) Q Consensus 14 ~Cg~KFYDlnk~-PiiCP~CG~e~~~~ 39 (129) +.-..++=|.|. |--||.||.-|.+. T Consensus 30 ~h~v~W~~l~~g~p~RC~eCG~~fkL~ 56 (62) T 1v54_F 30 NSTVIWFWLHKGEAQRCPSCGTHYKLV 56 (62) T ss_dssp CSCCEEEEEESSSCEECTTTCCEEEEE T ss_pred CCEEEEEEEECCCCCCCCCCCCEEEEE T ss_conf 753388997579975268788489986 No 122 >>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, signaling protein; 2.90A {Chlorobaculum tepidum} (A:375-535) Probab=43.66 E-value=7.4 Score=19.64 Aligned_cols=34 Identities=9% Similarity=0.108 Sum_probs=27.5 Q ss_pred CCCCCCCCCEEE---------ECCCCCCCCCCCCCEECHHHHH Q ss_conf 311788887442---------1488872277898715323310 Q gi|254780459|r 9 KRTCPDTGKRFY---------DLNKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 9 KR~C~~Cg~KFY---------Dlnk~PiiCP~CG~e~~~~~~~ 42 (129) +-.||.|..+.. ..++.-++||.|+..+.+..+. T Consensus 106 ~VpCp~c~~~~~~~~~l~~~e~~g~~~i~C~~~~~~v~i~~l~ 148 (161) T 3dpu_A 106 FIPLPGHPDELVEYKELLGLEKMGRDRYVSGKLEKVFSVSKML 148 (161) T ss_dssp EEEETTEEEEEEEHHHHHHHHHTTCCEEEETTTTEEEEHHHHH T ss_pred EEECCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCEEEHHHHH T ss_conf 8628898667868888888987899777579889577899964 No 123 >>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (1:) Probab=43.34 E-value=15 Score=17.75 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.1 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCC Q ss_conf 1178888744214888722778987 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQVIVSPYTQN 34 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~PiiCP~CG~ 34 (129) -.|.-||.+=|-+.|. .|.+||. T Consensus 18 ~lCrRCG~~syH~qK~--~CasCGy 40 (57) T 1vq8_1 18 TKCRRCGEKSYHTKKK--VCSSCGF 40 (57) T ss_dssp EECTTTCSEEEETTTT--EETTTCT T ss_pred CHHHCCCCHHHHHCCC--CCCCCCC T ss_conf 5431658244433144--0144688 No 124 >>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} (A:72-100) Probab=43.14 E-value=11 Score=18.63 Aligned_cols=19 Identities=5% Similarity=-0.066 Sum_probs=13.7 Q ss_pred CCCCCCCCCCCEECHHHHH Q ss_conf 8872277898715323310 Q gi|254780459|r 24 KQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 24 k~PiiCP~CG~e~~~~~~~ 42 (129) -.|-.|+.||..|.-...+ T Consensus 2 EkPy~C~~Cgk~F~~~s~L 20 (29) T 2ebt_A 2 AKPFQCGVCNRSFSRSDHL 20 (29) T ss_dssp CCSCBCSSSCCBCSSHHHH T ss_pred CCCCCCCCCCCCCCCHHHH T ss_conf 6665347788603776899 No 125 >>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} (I:54-122) Probab=42.85 E-value=11 Score=18.63 Aligned_cols=31 Identities=19% Similarity=0.471 Sum_probs=18.6 Q ss_pred CCCCCCCCCCE---EEECCCC----C----CCCCCCCCEECH Q ss_conf 83117888874---4214888----7----227789871532 Q gi|254780459|r 8 TKRTCPDTGKR---FYDLNKQ----V----IVSPYTQNSWPL 38 (129) Q Consensus 8 ~KR~C~~Cg~K---FYDlnk~----P----iiCP~CG~e~~~ 38 (129) ++..||.||-+ ||=+--. | .+|.+||..|.. T Consensus 18 t~~~Cp~Cg~~ea~f~q~QtRsaDE~mT~Fy~C~~C~~~W~e 59 (69) T 1twf_I 18 SDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTS 59 (69) T ss_dssp CCCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEEC T ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCCCCEECC T ss_conf 466786679987116874446678897399996999999077 No 126 >>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=42.75 E-value=11 Score=18.48 Aligned_cols=20 Identities=5% Similarity=0.162 Sum_probs=14.3 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +..|-.|+.||..|.-...+ T Consensus 6 geKpy~C~~Cgk~F~~~s~L 25 (36) T 2els_A 6 SGKIFTCEYCNKVFKFKHSL 25 (36) T ss_dssp CCCCEECTTTCCEESSHHHH T ss_pred CCCEEEEHHHHHHHHHHHHH T ss_conf 77457515654577577777 No 127 >>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=42.74 E-value=12 Score=18.34 Aligned_cols=17 Identities=0% Similarity=-0.097 Sum_probs=13.7 Q ss_pred CCCCCCCCCCCCEECHH Q ss_conf 88872277898715323 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLA 39 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~ 39 (129) +..|-.|+.||..|.-. T Consensus 8 geKpy~C~~Cgk~F~~~ 24 (42) T 2en2_A 8 GEKPYKCETCGARFVQV 24 (42) T ss_dssp SSCSEECTTTCCEESSH T ss_pred CCCCEECCCCCCCCCCH T ss_conf 99897789889842788 No 128 >>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* (A:601-677) Probab=42.59 E-value=20 Score=17.05 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=21.5 Q ss_pred CCCC---CCEEEECCCCC---CCCCCCC-CEECHHH Q ss_conf 7888---87442148887---2277898-7153233 Q gi|254780459|r 12 CPDT---GKRFYDLNKQV---IVSPYTQ-NSWPLAY 40 (129) Q Consensus 12 C~~C---g~KFYDlnk~P---iiCP~CG-~e~~~~~ 40 (129) ||.| |...++|.--| +.||.|+ +-|.++. T Consensus 41 Cp~C~G~G~i~~~m~f~~~v~~~C~~C~GkRf~~e~ 76 (77) T 2vf7_A 41 CEHCQGEGWVMVELLFLPSVYAPCPVCHGTRYNAET 76 (77) T ss_dssp CTTTTTCSEEEETTCSSSCEEEECTTTTTCCBCTTG T ss_pred CEECCCCCCCCHHHHHHHHCCCCHHHHHCCHHHHHH T ss_conf 100014662000222212201106665060002453 No 129 >>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} (A:) Probab=42.57 E-value=6.9 Score=19.83 Aligned_cols=13 Identities=0% Similarity=-0.151 Sum_probs=6.9 Q ss_pred CCCCCCCCCEECH Q ss_conf 7227789871532 Q gi|254780459|r 26 VIVSPYTQNSWPL 38 (129) Q Consensus 26 PiiCP~CG~e~~~ 38 (129) -.+|+-||--|.- T Consensus 8 ~f~C~pCGIrFsS 20 (36) T 1fv5_A 8 RFMCLPCGIAFSS 20 (36) T ss_dssp CCEETTTTEECSC T ss_pred EEEEECCCEEECC T ss_conf 2677623110158 No 130 >>2odx_A Cytochrome C oxidase polypeptide IV; all beta-protein, metallo-protein, oxidoreductase; NMR {Saccharomyces cerevisiae} (A:) Probab=42.50 E-value=15 Score=17.83 Aligned_cols=27 Identities=7% Similarity=-0.095 Sum_probs=22.3 Q ss_pred CCCCEEEECCCC-CCCCCCCCCEECHHH Q ss_conf 888744214888-722778987153233 Q gi|254780459|r 14 DTGKRFYDLNKQ-VIVSPYTQNSWPLAY 40 (129) Q Consensus 14 ~Cg~KFYDlnk~-PiiCP~CG~e~~~~~ 40 (129) +.-..++=|.|. |--||.||.-|.+.. T Consensus 43 sh~v~W~~l~~g~p~RC~eCG~~fkL~~ 70 (80) T 2odx_A 43 SHTIMWLKPTVNEVARCWECGSVYKLNP 70 (80) T ss_dssp CSCCEEECCCTTCEEECSSSCCEEEECC T ss_pred CCEEEEEEECCCCCCCCCCCCCEEEEEE T ss_conf 6366899971798556677885999988 No 131 >>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} (A:1-47) Probab=41.19 E-value=13 Score=18.21 Aligned_cols=20 Identities=10% Similarity=0.255 Sum_probs=14.8 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) ...|-.|+.||..|.-...+ T Consensus 14 gekpy~C~~Cgk~F~~~s~L 33 (47) T 2ee8_A 14 TKKEFICKFCGRHFTKSYNL 33 (47) T ss_dssp CCCCCBCSSSCCBCSSHHHH T ss_pred CCCCCCCCCCCCEECCHHHC T ss_conf 99691999999980878667 No 132 >>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:42-72) Probab=41.17 E-value=2.9 Score=22.14 Aligned_cols=15 Identities=13% Similarity=0.202 Sum_probs=12.4 Q ss_pred CCCCCCCCCCCCCEE Q ss_conf 488872277898715 Q gi|254780459|r 22 LNKQVIVSPYTQNSW 36 (129) Q Consensus 22 lnk~PiiCP~CG~e~ 36 (129) -.|+-|.||.||..+ T Consensus 11 terddilcp~cgkdi 25 (31) T 1x4l_A 11 TERDDILCPDCGKDI 25 (31) T ss_dssp ECSSSEECHHHHHTC T ss_pred EECCEEECHHHCCCC T ss_conf 789999783460176 No 133 >>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens} (A:) Probab=40.65 E-value=21 Score=16.82 Aligned_cols=26 Identities=31% Similarity=0.547 Sum_probs=19.3 Q ss_pred CCCCCCCCEEE----ECC--CCCCCCCCCCCEE Q ss_conf 11788887442----148--8872277898715 Q gi|254780459|r 10 RTCPDTGKRFY----DLN--KQVIVSPYTQNSW 36 (129) Q Consensus 10 R~C~~Cg~KFY----Dln--k~PiiCP~CG~e~ 36 (129) +-|| ||-+|. +|. -.-+.||+|.--+ T Consensus 24 ypCr-CGd~F~it~~dLe~ge~vv~C~sCSL~I 55 (89) T 2jr7_A 24 YPCP-CGDNFSITKEDLENGEDVATCPSCSLII 55 (89) T ss_dssp EECT-TSSEEEEEHHHHHHTCCEEECTTTCCEE T ss_pred ECCC-CCCEEEECHHHHHCCCCEEECCCCCCEE T ss_conf 5789-9995898899996899199699986389 No 134 >>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=40.36 E-value=14 Score=18.03 Aligned_cols=19 Identities=5% Similarity=-0.057 Sum_probs=13.9 Q ss_pred CCCCCCCCCCCCEECHHHH Q ss_conf 8887227789871532331 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~ 41 (129) +..|-.|+.||..|.-... T Consensus 6 geKpy~C~~Cgk~F~~~s~ 24 (36) T 2elt_A 6 SGKPYKCPQCSYASAIKAN 24 (36) T ss_dssp CCCSEECSSSSCEESSHHH T ss_pred CCCCEECCCCCCCCCCHHH T ss_conf 9989873799987168678 No 135 >>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} (D:400-454) Probab=39.89 E-value=15 Score=17.83 Aligned_cols=15 Identities=13% Similarity=0.124 Sum_probs=11.6 Q ss_pred CC-CCCCCCCEECHHH Q ss_conf 72-2778987153233 Q gi|254780459|r 26 VI-VSPYTQNSWPLAY 40 (129) Q Consensus 26 Pi-iCP~CG~e~~~~~ 40 (129) || +||=||-.+.+.. T Consensus 1 p~~idpVCgmpv~~~~ 16 (55) T 1mty_D 1 PIYIDRVSQVPFCPSL 16 (55) T ss_dssp CCEECTTTCCEECTTT T ss_pred CCCCCCCCCCCCCCCC T ss_conf 7232201577611257 No 136 >>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} (A:) Probab=39.74 E-value=13 Score=18.08 Aligned_cols=20 Identities=10% Similarity=0.044 Sum_probs=14.3 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) ...|-.|+.||..|.-...+ T Consensus 8 gekpy~C~~Cgk~F~~~s~L 27 (37) T 1p7a_A 8 GIKPFQCPDCDRSFSRSDHL 27 (37) T ss_dssp CSSSBCCTTTCCCBSSHHHH T ss_pred CCCCEECCCCCCEECCHHHH T ss_conf 88894789999991778888 No 137 >>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens} (A:1-33) Probab=39.70 E-value=11 Score=18.55 Aligned_cols=10 Identities=30% Similarity=0.710 Sum_probs=7.2 Q ss_pred CCCCCCCCEE Q ss_conf 1178888744 Q gi|254780459|r 10 RTCPDTGKRF 19 (129) Q Consensus 10 R~C~~Cg~KF 19 (129) .+|+.||+|| T Consensus 22 iicLEDGkk~ 31 (33) T 2jsp_A 22 IVCLECGGSF 31 (33) T ss_dssp EECTBTCCEE T ss_pred EEEECCCCCH T ss_conf 6871378306 No 138 >>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=39.63 E-value=17 Score=17.45 Aligned_cols=27 Identities=15% Similarity=0.180 Sum_probs=14.5 Q ss_pred CCCCCCCCEEEEC---------CCCCCCCCC--CCCEE Q ss_conf 1178888744214---------888722778--98715 Q gi|254780459|r 10 RTCPDTGKRFYDL---------NKQVIVSPY--TQNSW 36 (129) Q Consensus 10 R~C~~Cg~KFYDl---------nk~PiiCP~--CG~e~ 36 (129) ..|+.|+.+|.=- .+.|+.||. |+..+ T Consensus 11 ~~C~~C~~~~~~~~~~~H~~~C~~~~v~C~~~~c~~~i 48 (66) T 2eod_A 11 QPCTYCTKEFVFDTIQSHQYQCPRLPVACPNQCGVGTV 48 (66) T ss_dssp EECSSSCCEEEHHHHHHHHHHCSSSEEECTTCCSCCEE T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCC T ss_conf 62999985100868989987589867679888784416 No 139 >>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} (A:12-82) Probab=39.55 E-value=16 Score=17.52 Aligned_cols=31 Identities=10% Similarity=0.133 Sum_probs=25.1 Q ss_pred CCCCCCCCCE--EEECCCCCCCCCCCCCEECHH Q ss_conf 3117888874--421488872277898715323 Q gi|254780459|r 9 KRTCPDTGKR--FYDLNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 9 KR~C~~Cg~K--FYDlnk~PiiCP~CG~e~~~~ 39 (129) .-+||-.|.. .+.+...-|+||+.|..|++. T Consensus 28 ~~~CpH~g~~l~~g~~~~~~i~Cp~Hg~~Fdl~ 60 (71) T 3dqy_A 28 QDTCTHGDWALSDGYLDGDIVECTLHFGKFXVR 60 (71) T ss_dssp ESBCSSSSCBGGGSEEETTEEECTTTCCEEETT T ss_pred ECCCCCEEEEEEEEECCCCEEEEECCCCEEECC T ss_conf 773123358731214059999974588789889 No 140 >>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=39.34 E-value=14 Score=18.01 Aligned_cols=19 Identities=0% Similarity=-0.134 Sum_probs=14.4 Q ss_pred CCCCCCCCCCCCEECHHHH Q ss_conf 8887227789871532331 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~ 41 (129) ...|-.|+.||..|.-... T Consensus 8 gekpy~C~~Cgk~F~~~s~ 26 (42) T 2eos_A 8 GEKPYPCEICGTRFRHLQT 26 (42) T ss_dssp SSCCBCCSSSCCCBSSHHH T ss_pred CCCCEECCCCCCCCCCHHH T ss_conf 9989868988981478788 No 141 >>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.10A {Pseudomonas aeruginosa PAO1} (A:1-26,A:182-309) Probab=39.14 E-value=15 Score=17.83 Aligned_cols=23 Identities=13% Similarity=0.063 Sum_probs=9.3 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCEE Q ss_conf 17888874421488872277898715 Q gi|254780459|r 11 TCPDTGKRFYDLNKQVIVSPYTQNSW 36 (129) Q Consensus 11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~ 36 (129) .|.-||+... -.-+.||+||..- T Consensus 55 ~CslC~teW~---~~R~~Cp~CG~~~ 77 (154) T 2fiy_A 55 SCSLCACEWH---YVRIKCSHCEESK 77 (154) T ss_dssp EETTTCCEEE---CCTTSCSSSCCCS T ss_pred ECCCCCCCCC---EECCCCCCCCCCC T ss_conf 7799888552---3277684999999 No 142 >>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} (A:) Probab=39.12 E-value=11 Score=18.54 Aligned_cols=26 Identities=35% Similarity=0.563 Sum_probs=18.3 Q ss_pred CCCCCCCCEEE----ECCCC--CCCCCCCCCEE Q ss_conf 11788887442----14888--72277898715 Q gi|254780459|r 10 RTCPDTGKRFY----DLNKQ--VIVSPYTQNSW 36 (129) Q Consensus 10 R~C~~Cg~KFY----Dlnk~--PiiCP~CG~e~ 36 (129) +-|| ||-+|- +|..- -+-||+|.--+ T Consensus 24 ypCr-CGd~F~it~~dLe~ge~v~~C~sCSL~i 55 (83) T 1yop_A 24 YPCP-CGDRFQIYLDDMFEGEKVAVCPSCSLMI 55 (83) T ss_dssp EEET-TTEEEEEEHHHHHTTCCEEECSSSCCEE T ss_pred ECCC-CCCCEECCHHHHHCCCCEEECCCCCCEE T ss_conf 6378-8984032899986899488189986389 No 143 >>2i13_A AART; DNA binding, zinc finger, DNA binding protein/DNA complex; 1.96A {Mus musculus} (A:130-157) Probab=38.98 E-value=14 Score=17.94 Aligned_cols=18 Identities=11% Similarity=0.019 Sum_probs=12.8 Q ss_pred CCCCCCCCCCCEECHHHH Q ss_conf 887227789871532331 Q gi|254780459|r 24 KQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 24 k~PiiCP~CG~e~~~~~~ 41 (129) -.|-.|+.||..|.-... T Consensus 2 EKPy~C~~Cgk~F~~~s~ 19 (28) T 2i13_A 2 EKPYKCPECGKSFSREDN 19 (28) T ss_dssp CCCEECTTTCCEESCHHH T ss_pred CCCEECCCCCCCCCCCCC T ss_conf 877005764442311122 No 144 >>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} (A:1-42) Probab=38.67 E-value=15 Score=17.81 Aligned_cols=20 Identities=5% Similarity=-0.105 Sum_probs=14.5 Q ss_pred CCCCCCCCCCCCCEECHHHH Q ss_conf 48887227789871532331 Q gi|254780459|r 22 LNKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 22 lnk~PiiCP~CG~e~~~~~~ 41 (129) .+..|-.|+.||..|.-... T Consensus 14 tgeKpy~C~~Cgk~F~~~s~ 33 (42) T 2cot_A 14 RERRRYKCDECGKSFSHSSD 33 (42) T ss_dssp CCSCSSBCSSSCCBCSCHHH T ss_pred CCCCCCCCCCCCCCCCCCCC T ss_conf 89978088989979733454 No 145 >>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A (A:) Probab=38.55 E-value=9.7 Score=18.91 Aligned_cols=19 Identities=26% Similarity=0.517 Sum_probs=16.0 Q ss_pred HHCCCCCCCCCCCEEEECC Q ss_conf 2278311788887442148 Q gi|254780459|r 5 ELGTKRTCPDTGKRFYDLN 23 (129) Q Consensus 5 elG~KR~C~~Cg~KFYDln 23 (129) .-|+|+.|--|-+||-|.. T Consensus 5 ssgikqhcrfckkkysdvk 23 (37) T 2elu_A 5 SSGIKQHCRFCKKKYSDVK 23 (37) T ss_dssp CCCCCCEETTTTEECSSHH T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 1668999999998878899 No 146 >>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) sequence RTPA; anti-trap, tryptophan RNA-binding attenuation protein; 2.06A {Bacillus licheniformis} PDB: 3ld0_A (A:) Probab=38.40 E-value=14 Score=17.92 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=16.1 Q ss_pred CCCCCCCCCEEEECCC-CCCCCCCCCCE Q ss_conf 3117888874421488-87227789871 Q gi|254780459|r 9 KRTCPDTGKRFYDLNK-QVIVSPYTQNS 35 (129) Q Consensus 9 KR~C~~Cg~KFYDlnk-~PiiCP~CG~e 35 (129) ..+||+|..- ++ .|--||+|+.- T Consensus 9 e~tcp~c~~~----g~~e~~pcp~c~~k 32 (53) T 3lcz_A 9 ETTCPNCNGS----GREEPEPCPKCLGK 32 (53) T ss_dssp EEECTTTTTS----CEETTEECTTTTTS T ss_pred CCCCCCCCCC----CCCCCCCCCCCCCC T ss_conf 0028676675----76279838634575 No 147 >>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* (A:64-90) Probab=38.12 E-value=13 Score=18.09 Aligned_cols=17 Identities=6% Similarity=-0.009 Sum_probs=12.3 Q ss_pred CCCCCCCCCCEECHHHH Q ss_conf 87227789871532331 Q gi|254780459|r 25 QVIVSPYTQNSWPLAYF 41 (129) Q Consensus 25 ~PiiCP~CG~e~~~~~~ 41 (129) .|-.|+.||..|.-... T Consensus 2 KPy~C~eCgK~F~~~s~ 18 (27) T 2jp9_A 2 KPFQCKTCQRKFSRSDH 18 (27) T ss_dssp CCEECTTTCCEESCHHH T ss_pred CCCCCCCCCCCCHHHHH T ss_conf 76523234211103443 No 148 >>2i13_A AART; DNA binding, zinc finger, DNA binding protein/DNA complex; 1.96A {Mus musculus} (A:103-129) Probab=36.93 E-value=15 Score=17.81 Aligned_cols=16 Identities=13% Similarity=0.098 Sum_probs=11.3 Q ss_pred CCCCCCCCCCEECHHH Q ss_conf 8722778987153233 Q gi|254780459|r 25 QVIVSPYTQNSWPLAY 40 (129) Q Consensus 25 ~PiiCP~CG~e~~~~~ 40 (129) .|-.|+.||..|.-.. T Consensus 2 KPy~C~~CgK~F~~~s 17 (27) T 2i13_A 2 KPYACPECGKSFSQLA 17 (27) T ss_dssp CCEECTTTCCEESSHH T ss_pred CCCCCCCCCCCCCCHH T ss_conf 6803897887222034 No 149 >>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} (A:1-67) Probab=36.81 E-value=12 Score=18.39 Aligned_cols=29 Identities=17% Similarity=0.362 Sum_probs=21.3 Q ss_pred CCCCCCCEEEEC---------CCCCCCCCCCCCEE-CHH Q ss_conf 178888744214---------88872277898715-323 Q gi|254780459|r 11 TCPDTGKRFYDL---------NKQVIVSPYTQNSW-PLA 39 (129) Q Consensus 11 ~C~~Cg~KFYDl---------nk~PiiCP~CG~e~-~~~ 39 (129) .|--|.+|+--| -|.--+||||+--| .|+ T Consensus 18 ~CrLCnaklssl~Eqg~HER~CrnatvCPYCsLRF~sp~ 56 (67) T 1wjp_A 18 QCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPE 56 (67) T ss_dssp BCTTTCCBCSSHHHHHHHHHHHHHSBCCTTTCCCBSSHH T ss_pred CCCCCCCCCCCHHHHHCCCCCCCCCCEECCCCCCCCCHH T ss_conf 897860526688885012126788838558988766788 No 150 >>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} (A:35-62) Probab=36.71 E-value=15 Score=17.72 Aligned_cols=14 Identities=0% Similarity=-0.038 Sum_probs=10.8 Q ss_pred CCCCCCCCCCEECH Q ss_conf 87227789871532 Q gi|254780459|r 25 QVIVSPYTQNSWPL 38 (129) Q Consensus 25 ~PiiCP~CG~e~~~ 38 (129) .|-.|+.||..|.- T Consensus 2 kP~~C~~C~k~F~r 15 (28) T 2csh_A 2 RPYGCGVCGKKFKM 15 (28) T ss_dssp CSEECTTTSCEESS T ss_pred CCCCCCCCCCCCCC T ss_conf 00122223222110 No 151 >>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} (A:) Probab=36.68 E-value=13 Score=18.09 Aligned_cols=22 Identities=9% Similarity=0.110 Sum_probs=17.4 Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCE Q ss_conf 311788887442148887227789871 Q gi|254780459|r 9 KRTCPDTGKRFYDLNKQVIVSPYTQNS 35 (129) Q Consensus 9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e 35 (129) =|.|..|+. =++.=.||.||.+ T Consensus 11 ~rAC~~C~~-----i~~~~~CpnC~s~ 32 (69) T 1ryq_A 11 EKACRHCHY-----ITSEDRCPVCGSR 32 (69) T ss_dssp CEEETTTCB-----EESSSSCTTTCCC T ss_pred CHHHHHCCC-----CCCCCCCCCCCCC T ss_conf 335752987-----6688879897498 No 152 >>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} (A:1-147) Probab=36.65 E-value=18 Score=17.28 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=23.2 Q ss_pred CCCCCCCCCEEEE----CCCCCCCCCCCCCEECHHH Q ss_conf 3117888874421----4888722778987153233 Q gi|254780459|r 9 KRTCPDTGKRFYD----LNKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 9 KR~C~~Cg~KFYD----lnk~PiiCP~CG~e~~~~~ 40 (129) -..||..|...-. -+..-|+||+.|..|++.. T Consensus 66 ~n~CpH~g~~L~~g~~~~~~~~i~Cp~H~~~f~l~t 101 (147) T 2de6_A 66 KDRCLHRGVQLSVKVECKTKSTITCWYHAWTYRWED 101 (147) T ss_dssp ESSCTTTCCCGGGGCCCCSTTEEECTTTCEEEETTT T ss_pred ECCCCCCCCEEECCCCCCCCCEEECCCCCEEEECCC T ss_conf 598889998855673227799678797885995354 No 153 >>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), zinc finger, DNA-binding protein; HET: DNA; 1.60A {Mus musculus} (A:59-90) Probab=36.39 E-value=17 Score=17.44 Aligned_cols=18 Identities=0% Similarity=-0.077 Sum_probs=13.4 Q ss_pred CCCCCCCCCCCEECHHHH Q ss_conf 887227789871532331 Q gi|254780459|r 24 KQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 24 k~PiiCP~CG~e~~~~~~ 41 (129) ..|-.|+.||..|.-... T Consensus 2 eKPy~C~~Cgk~F~~~s~ 19 (32) T 1a1h_A 2 EKPFACDICGRKFARSDE 19 (32) T ss_dssp CCCEECTTTCCEESSHHH T ss_pred CCCCEECCCCCCCCCHHH T ss_conf 777131326885078789 No 154 >>2i13_A AART; DNA binding, zinc finger, DNA binding protein/DNA complex; 1.96A {Mus musculus} (A:1-73) Probab=36.31 E-value=17 Score=17.43 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=20.0 Q ss_pred CCCCCCCEEEEC-----------CCCCCCCCCCCCEECHHHH Q ss_conf 178888744214-----------8887227789871532331 Q gi|254780459|r 11 TCPDTGKRFYDL-----------NKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 11 ~C~~Cg~KFYDl-----------nk~PiiCP~CG~e~~~~~~ 41 (129) .|..||+-|.-. +..|-.|..||..|..... T Consensus 23 ~c~~c~k~F~~~s~l~~hq~~H~gek~y~C~eCgk~F~~~s~ 64 (73) T 2i13_A 23 ACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKD 64 (73) T ss_dssp --------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHH T ss_pred ECCCCCCEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH T ss_conf 289999884888998888762102332211232323588889 No 155 >>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} (A:) Probab=36.10 E-value=14 Score=17.99 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=18.3 Q ss_pred CCCCCCCCEEE----ECCCC--CCCCCCCCCEE Q ss_conf 11788887442----14888--72277898715 Q gi|254780459|r 10 RTCPDTGKRFY----DLNKQ--VIVSPYTQNSW 36 (129) Q Consensus 10 R~C~~Cg~KFY----Dlnk~--PiiCP~CG~e~ 36 (129) +-|| ||-+|- +|-.- -+.||+|.--+ T Consensus 31 ypCr-CGd~f~it~~~Le~ge~v~~C~sCSL~i 62 (83) T 1wge_A 31 YPCP-CGDNFAITKEDLENGEDVATCPSCSLII 62 (83) T ss_dssp ECCS-SSSCEEEEHHHHHTTCCEEECTTTCCEE T ss_pred ECCC-CCCEEEECHHHHHCCCCEEECCCCCEEE T ss_conf 5788-9994898999985899589589984289 No 156 >>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} (A:) Probab=36.02 E-value=24 Score=16.49 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=17.6 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCC Q ss_conf 178888744214888722778987 Q gi|254780459|r 11 TCPDTGKRFYDLNKQVIVSPYTQN 34 (129) Q Consensus 11 ~C~~Cg~KFYDlnk~PiiCP~CG~ 34 (129) .|..|-+-.-++.| .-||+||. T Consensus 17 rC~aCf~~t~~~~k--~FCp~CGn 38 (79) T 2con_A 17 RCHGCFKTTSDMNR--VFCGHCGN 38 (79) T ss_dssp ECSSSCCEESCSSC--CSCSSSCC T ss_pred EEEECCCCCCCCCC--CCCCCCCC T ss_conf 64233558688766--62743698 No 157 >>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=35.92 E-value=19 Score=17.08 Aligned_cols=12 Identities=0% Similarity=-0.036 Sum_probs=6.1 Q ss_pred CCCCCCCCCEEC Q ss_conf 722778987153 Q gi|254780459|r 26 VIVSPYTQNSWP 37 (129) Q Consensus 26 PiiCP~CG~e~~ 37 (129) |-.|+.||..|. T Consensus 25 p~~C~~C~k~F~ 36 (95) T 2ej4_A 25 SRPKKSCDRTFS 36 (95) T ss_dssp SSSCCCCCCCCS T ss_pred CCCCCCCCCEEC T ss_conf 976899999838 No 158 >>3dpt_A ROCO, RAB family protein; alpha-beta-protein, signaling protein; 2.90A {Chlorobaculum tepidum} (A:172-332) Probab=35.79 E-value=12 Score=18.44 Aligned_cols=34 Identities=9% Similarity=0.109 Sum_probs=26.8 Q ss_pred CCCCCCCCCEEE---------ECCCCCCCCCCCCCEECHHHHH Q ss_conf 311788887442---------1488872277898715323310 Q gi|254780459|r 9 KRTCPDTGKRFY---------DLNKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 9 KR~C~~Cg~KFY---------Dlnk~PiiCP~CG~e~~~~~~~ 42 (129) +-.||.|..+.- .+++.-++||.|+..+.+..+. T Consensus 106 ~vpCp~c~~~~~~~p~l~~~e~~g~~~~~C~~~~~~v~i~~l~ 148 (161) T 3dpt_A 106 FIPLPGHPDELVEYKELLGLEKMGRDEYVSGKLEKVFSVSKML 148 (161) T ss_dssp EEEETTEEEEEEEHHHHHHHHHTTCCEEEETTTTEEEEHHHHH T ss_pred EEECCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCEEEHHHHH T ss_conf 9989799887736999999997899588479889476889963 No 159 >>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=35.42 E-value=18 Score=17.29 Aligned_cols=20 Identities=0% Similarity=-0.172 Sum_probs=14.9 Q ss_pred CCCCCCCCCCCCCEECHHHH Q ss_conf 48887227789871532331 Q gi|254780459|r 22 LNKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 22 lnk~PiiCP~CG~e~~~~~~ 41 (129) .+..|-.|+.||..|.-..- T Consensus 8 tgekp~~C~~C~k~F~~~s~ 27 (46) T 2enc_A 8 SGEKPFKCEECGKGFYTNSQ 27 (46) T ss_dssp CCCCSEECSSSCCEESSHHH T ss_pred CCCCCEECCCCCEEECCHHH T ss_conf 89889815986877034176 No 160 >>2i13_A AART; DNA binding, zinc finger, DNA binding protein/DNA complex; 1.96A {Mus musculus} (A:158-190) Probab=35.26 E-value=18 Score=17.27 Aligned_cols=18 Identities=11% Similarity=0.023 Sum_probs=13.2 Q ss_pred CCCCCCCCCCCEECHHHH Q ss_conf 887227789871532331 Q gi|254780459|r 24 KQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 24 k~PiiCP~CG~e~~~~~~ 41 (129) -.|-.|+.||..|.-... T Consensus 2 eKpy~C~~Cgk~F~~~s~ 19 (33) T 2i13_A 2 EKPYKCPECGKSFSRRDA 19 (33) T ss_dssp CCCEECTTTCCEESSHHH T ss_pred CCCEECCCCCCEECCHHH T ss_conf 848079999997499999 No 161 >>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=35.16 E-value=18 Score=17.25 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=15.1 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +..|-.|+.||..|.-...+ T Consensus 9 gekp~~C~~Cgk~F~~~~~L 28 (46) T 2eme_A 9 GEKPYVCDYCGKAFGLSAEL 28 (46) T ss_dssp CCCSEECSSSCCEESSHHHH T ss_pred CCCCEECCCCCCEECCHHHH T ss_conf 96897899999851788897 No 162 >>2ba1_A Archaeal exosome RNA binding protein CSL4; RNAse PH, RNA degradation, exoribonuclease, RNA binding, S1 domain, Zn-ribbon, phosphorolytic; 2.70A {Archaeoglobus fulgidus} (A:146-179) Probab=34.95 E-value=14 Score=17.90 Aligned_cols=11 Identities=9% Similarity=0.241 Sum_probs=7.9 Q ss_pred CCCCCCCCCCE Q ss_conf 87227789871 Q gi|254780459|r 25 QVIVSPYTQNS 35 (129) Q Consensus 25 ~PiiCP~CG~e 35 (129) .-++||.||.. T Consensus 10 ~kL~CP~Cgrv 20 (34) T 2ba1_A 10 DILKCPECGRV 20 (34) T ss_dssp TEEECTTTCCE T ss_pred CEEECCCCCCE T ss_conf 98999999985 No 163 >>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix coturnix japonica} (A:1-40) Probab=34.90 E-value=14 Score=18.00 Aligned_cols=21 Identities=24% Similarity=0.635 Sum_probs=16.2 Q ss_pred HHHCCCCCCCCCCCEEEECCC Q ss_conf 222783117888874421488 Q gi|254780459|r 4 PELGTKRTCPDTGKRFYDLNK 24 (129) Q Consensus 4 ~elG~KR~C~~Cg~KFYDlnk 24 (129) |-+|+.-.|+.||+.-|-+-| T Consensus 2 ~~~g~~~~C~~C~k~VY~~E~ 22 (40) T 1a7i_A 2 PNWGGGNKCGACGRTVYHAEE 22 (40) T ss_dssp ------CBCSSSCCBCSSTTE T ss_pred CCCCCCHHHHHCCCEECCCEE T ss_conf 478867125538876157138 No 164 >>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:1-41) Probab=34.72 E-value=19 Score=17.12 Aligned_cols=19 Identities=0% Similarity=0.050 Sum_probs=13.6 Q ss_pred CCCCCCCCCCCCEECHHHH Q ss_conf 8887227789871532331 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~ 41 (129) +-.|-.|+.||..|.-... T Consensus 12 gekpy~C~~C~k~F~~~~~ 30 (41) T 1x6h_A 12 GEKPYACSHCDKTFRQKQL 30 (41) T ss_dssp CCCCEECSSSSCEESSHHH T ss_pred CCCCEECCCCCCCCCCCCC T ss_conf 9678548988983120212 No 165 >>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} (A:) Probab=34.48 E-value=14 Score=17.92 Aligned_cols=31 Identities=10% Similarity=-0.010 Sum_probs=21.8 Q ss_pred CCCCCCCCCEEEEC----CCCCCCCCCCCCEECHH Q ss_conf 31178888744214----88872277898715323 Q gi|254780459|r 9 KRTCPDTGKRFYDL----NKQVIVSPYTQNSWPLA 39 (129) Q Consensus 9 KR~C~~Cg~KFYDl----nk~PiiCP~CG~e~~~~ 39 (129) +-+|+.|...+--. ......||.||....|. T Consensus 113 ~~~C~~c~~~~~~~~~~~~~~~p~C~~Cgg~~~p~ 147 (235) T 1s5p_A 113 KVRCSQSGQVLDWTGDVTPEDKCHCCQFPAPLRPH 147 (235) T ss_dssp EEEETTTCCEEECCSCCCSSCCC-------CEEEE T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCC T ss_conf 69879999855533223555666665556205588 No 166 >>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} (A:1-31) Probab=34.46 E-value=18 Score=17.31 Aligned_cols=22 Identities=9% Similarity=0.194 Sum_probs=16.5 Q ss_pred CCCCCCCCCCCCEECHHHHHCC Q ss_conf 8887227789871532331012 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFEAP 44 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~~~ 44 (129) .+.|+.||-|-..|--..+++. T Consensus 4 ~~~~v~cptchk~flskyylkv 25 (31) T 2dlq_A 4 GSSGVECPTCHKKFLSKYYLKV 25 (31) T ss_dssp CCSSCCCTTTCCCCSSHHHHHH T ss_pred CCCCCCCCCCCCCCCCHHHCCC T ss_conf 8968799999989797766881 No 167 >>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} (A:63-110) Probab=34.26 E-value=16 Score=17.54 Aligned_cols=12 Identities=0% Similarity=-0.023 Sum_probs=7.0 Q ss_pred CCCCCCCCCCEE Q ss_conf 872277898715 Q gi|254780459|r 25 QVIVSPYTQNSW 36 (129) Q Consensus 25 ~PiiCP~CG~e~ 36 (129) .|--|-.||.-| T Consensus 2 KPYeC~~CgKkf 13 (48) T 2csh_A 2 KPYECNICAKRF 13 (48) T ss_dssp CCEECSSSCCEE T ss_pred EEECCCCCCCEE T ss_conf 120124477402 No 168 >>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} (C:28-88) Probab=33.80 E-value=19 Score=17.09 Aligned_cols=19 Identities=0% Similarity=-0.066 Sum_probs=13.4 Q ss_pred CCCCCCCCCCCEECHHHHH Q ss_conf 8872277898715323310 Q gi|254780459|r 24 KQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 24 k~PiiCP~CG~e~~~~~~~ 42 (129) -.|-.|+.||..|.-...+ T Consensus 2 ekpf~C~~C~k~F~~~~~L 20 (61) T 1llm_C 2 EKPFACDICGRKFARSDER 20 (61) T ss_dssp CCCEECTTTCCEESSHHHH T ss_pred CCCCCCCCCCCCCCCHHHH T ss_conf 9887565254334788999 No 169 >>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=33.78 E-value=21 Score=16.82 Aligned_cols=20 Identities=5% Similarity=-0.024 Sum_probs=14.8 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +..|-.|+.||..|.-...+ T Consensus 9 gekpy~C~~Cgk~F~~~s~L 28 (46) T 2emy_A 9 GENPYECHECGKAFSRKYQL 28 (46) T ss_dssp SSCCEECSSSCCEESSHHHH T ss_pred CCCCCCCCCCCEECCCCCCC T ss_conf 98880989899423105543 No 170 >>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} (A:) Probab=33.58 E-value=21 Score=16.85 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=16.8 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCEECHHHH Q ss_conf 11788887442148887227789871532331 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~ 41 (129) -.|+-| |++-+.|+++|.||..|--.=+ T Consensus 16 ~~C~IC----~~~~~~p~~~~~C~H~fc~~Ci 43 (74) T 2yur_A 16 LLCLIC----KDIMTDAVVIPCCGNSYCDECI 43 (74) T ss_dssp GSCSSS----CCCCTTCEECSSSCCEECTTHH T ss_pred CCCCCC----CHHHHCCEEECCCCCCCCHHHH T ss_conf 999678----9076095082778984499999 No 171 >>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A (A:142-227) Probab=33.35 E-value=16 Score=17.55 Aligned_cols=15 Identities=0% Similarity=-0.009 Sum_probs=7.0 Q ss_pred CCCCCCCCEECHHHH Q ss_conf 227789871532331 Q gi|254780459|r 27 IVSPYTQNSWPLAYF 41 (129) Q Consensus 27 iiCP~CG~e~~~~~~ 41 (129) +-|+.||.-|-...+ T Consensus 8 v~~~~t~~ryRAD~l 22 (86) T 2zt5_A 8 VKDVKNGECFRADHL 22 (86) T ss_dssp EEBSSSCCEEEHHHH T ss_pred HHCCCCCCCCCCCCC T ss_conf 760535600165211 No 172 >>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=33.15 E-value=22 Score=16.72 Aligned_cols=13 Identities=0% Similarity=0.061 Sum_probs=6.0 Q ss_pred CCCCCCCCCCCEE Q ss_conf 8872277898715 Q gi|254780459|r 24 KQVIVSPYTQNSW 36 (129) Q Consensus 24 k~PiiCP~CG~e~ 36 (129) ..|-.|+.||..| T Consensus 10 ekpy~C~~C~K~F 22 (54) T 2eps_A 10 GKPYICQSCGKGF 22 (54) T ss_dssp SCCEECSSSCCEE T ss_pred CCCCCCCCCCCCC T ss_conf 9783689989897 No 173 >>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida} (A:14-84) Probab=33.15 E-value=21 Score=16.82 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=24.8 Q ss_pred CCCCCCCCCEEE--ECCCCCCCCCCCCCEECHH Q ss_conf 311788887442--1488872277898715323 Q gi|254780459|r 9 KRTCPDTGKRFY--DLNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 9 KR~C~~Cg~KFY--Dlnk~PiiCP~CG~e~~~~ 39 (129) --+||-.|.-+. .++..-|+||+-|..|++. T Consensus 28 ~n~CpH~g~~L~~g~~~~~~i~Cp~H~~~fdl~ 60 (71) T 2qpz_A 28 DNLCTHGSARMSDGYLEGREIECPLHQGRFDVC 60 (71) T ss_dssp ESBCSSSSCBGGGSEEETTEEECTTTTCEEETT T ss_pred EEECCCCCCCCEECCCCCCEEEECCCCCEEECC T ss_conf 777796343410123789999861689899689 No 174 >>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} (C:1-162) Probab=32.99 E-value=23 Score=16.62 Aligned_cols=35 Identities=17% Similarity=0.299 Sum_probs=26.1 Q ss_pred HHHCCCCCCCC--CCCEEEECCCCCCCCCCCCCEECH Q ss_conf 22278311788--887442148887227789871532 Q gi|254780459|r 4 PELGTKRTCPD--TGKRFYDLNKQVIVSPYTQNSWPL 38 (129) Q Consensus 4 ~elG~KR~C~~--Cg~KFYDlnk~PiiCP~CG~e~~~ 38 (129) +++..=..||+ |+.|-.+-+-.--.||+|+..++. T Consensus 38 ~~~~~Y~aC~~~~C~kkv~~~~~~~~~C~~C~~~~~~ 74 (162) T 1l1o_C 38 KENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPN 74 (162) T ss_dssp CSTTEEEBCCSTTCCCBCEEETTTEEEETTTTEEESS T ss_pred CCCEEECCCCCHHCCCCCCCCCCCCEECCCCCCCCCC T ss_conf 7985996789232598334278981885899996876 No 175 >>3jyw_Y 60S ribosomal protein L37(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} (Y:) Probab=32.90 E-value=28 Score=16.11 Aligned_cols=25 Identities=16% Similarity=0.401 Sum_probs=20.7 Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCC Q ss_conf 831178888744214888722778987 Q gi|254780459|r 8 TKRTCPDTGKRFYDLNKQVIVSPYTQN 34 (129) Q Consensus 8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~ 34 (129) +--.|.-||.+=|-+.|. .|-+||. T Consensus 14 tH~~CrrCGr~syH~qK~--~Ca~CGy 38 (52) T 3jyw_Y 14 SHTLCNRCGRRSFHVQKK--TCSSCGY 38 (52) T ss_dssp CEECCSSSCCCCEETTTC--CCSSSCS T ss_pred CCCHHHCCCCHHHEECCC--CCCCCCC T ss_conf 416320648411010445--0233789 No 176 >>1ejp_A Syndecan-4; symmetric-parallel-interwinded dimer, signaling protein; NMR {Synthetic} (A:) Probab=32.79 E-value=19 Score=17.12 Aligned_cols=17 Identities=35% Similarity=0.419 Sum_probs=11.2 Q ss_pred EEECCCCCCCCCCCCCE Q ss_conf 42148887227789871 Q gi|254780459|r 19 FYDLNKQVIVSPYTQNS 35 (129) Q Consensus 19 FYDlnk~PiiCP~CG~e 35 (129) -|||+|.||---.--++ T Consensus 9 sydlgkkpiy~kapt~e 25 (28) T 1ejp_A 9 SYDLGKKPIYKKAPTNE 25 (28) T ss_dssp CCCCCSCCCCCCCCCCC T ss_pred CCCCCCCCCCCCCCCCH T ss_conf 52236674102276311 No 177 >>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), zinc finger, DNA-binding protein; HET: DNA; 1.60A {Mus musculus} (A:31-58) Probab=32.61 E-value=20 Score=16.94 Aligned_cols=18 Identities=0% Similarity=-0.018 Sum_probs=12.9 Q ss_pred CCCCCCCCCCCEECHHHH Q ss_conf 887227789871532331 Q gi|254780459|r 24 KQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 24 k~PiiCP~CG~e~~~~~~ 41 (129) -.|-.|+.||..|.-... T Consensus 2 EKPy~C~~Cgk~F~~~s~ 19 (28) T 1a1h_A 2 QKPFQCRICMRNFSRSDH 19 (28) T ss_dssp CCCEECTTTCCEESCHHH T ss_pred CCCCCCCCCCCCCCCCCC T ss_conf 421001335664111331 No 178 >>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} (G:46-73) Probab=32.61 E-value=20 Score=16.94 Aligned_cols=18 Identities=0% Similarity=-0.018 Sum_probs=12.9 Q ss_pred CCCCCCCCCCCEECHHHH Q ss_conf 887227789871532331 Q gi|254780459|r 24 KQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 24 k~PiiCP~CG~e~~~~~~ 41 (129) -.|-.|+.||..|.-... T Consensus 2 EKPy~C~~Cgk~F~~~s~ 19 (28) T 1f2i_G 2 QKPFQCRICMRNFSRSDH 19 (28) T ss_dssp CCCEECTTTCCEESCHHH T ss_pred CCCEECCCCCCCCCCHHH T ss_conf 818179989887388889 No 179 >>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} (B:58-102) Probab=32.40 E-value=16 Score=17.61 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=16.6 Q ss_pred CCCCCCEEEECCCCCCCC--------CCCCCEE Q ss_conf 788887442148887227--------7898715 Q gi|254780459|r 12 CPDTGKRFYDLNKQVIVS--------PYTQNSW 36 (129) Q Consensus 12 C~~Cg~KFYDlnk~PiiC--------P~CG~e~ 36 (129) |.-||..|==|.-.+++| -+||-++ T Consensus 1 C~LCG~~fg~lg~~~v~C~DCkk~VCtKCgVet 33 (45) T 1zbd_B 1 CILCGEQLGXLGSASVVCEDCKKNVCTKCGVET 33 (45) T ss_dssp CSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCC T ss_conf 955891002889999998688933018998875 No 180 >>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:1-39) Probab=32.19 E-value=22 Score=16.74 Aligned_cols=18 Identities=0% Similarity=-0.103 Sum_probs=13.3 Q ss_pred CCCCCCCCCCCCEECHHH Q ss_conf 888722778987153233 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~ 40 (129) ...|-.|..||..|.-.. T Consensus 11 gekpy~C~~Cgk~F~~~s 28 (39) T 1x6e_A 11 GEKPYGCVECGKAFSRSS 28 (39) T ss_dssp TCCCEECSSSCCEESSHH T ss_pred CCCCCCCCCCCCCCCCCC T ss_conf 986827897898044253 No 181 >>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} (A:) Probab=31.96 E-value=25 Score=16.44 Aligned_cols=20 Identities=5% Similarity=-0.054 Sum_probs=14.9 Q ss_pred CCCCCCCCCCCCCEECHHHH Q ss_conf 48887227789871532331 Q gi|254780459|r 22 LNKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 22 lnk~PiiCP~CG~e~~~~~~ 41 (129) .+..|-.|+.||..|.-... T Consensus 8 tgekp~~C~~Cgk~F~~~s~ 27 (46) T 2el4_A 8 TGVKPYGCSQCAKTFSLKSQ 27 (46) T ss_dssp CCCCSEECSSSSCEESSHHH T ss_pred CCCCCEECCCCCEECCCHHH T ss_conf 89888576999965274256 No 182 >>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens} (A:) Probab=31.93 E-value=22 Score=16.77 Aligned_cols=19 Identities=5% Similarity=-0.046 Sum_probs=13.1 Q ss_pred CCCCCCCC--CCCCEECHHHH Q ss_conf 88872277--89871532331 Q gi|254780459|r 23 NKQVIVSP--YTQNSWPLAYF 41 (129) Q Consensus 23 nk~PiiCP--~CG~e~~~~~~ 41 (129) +..|-.|+ .||..|.-..- T Consensus 5 GekPy~C~~~~CgK~F~~~s~ 25 (37) T 1va1_A 5 KKKQHICHIQGCGKVYGKTSH 25 (37) T ss_dssp SCCCEECCSTTCCCEESCHHH T ss_pred CCCCCCCCCCCCCCEECCHHH T ss_conf 987849929898984497456 No 183 >>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} (A:1-38) Probab=31.90 E-value=18 Score=17.27 Aligned_cols=20 Identities=0% Similarity=-0.252 Sum_probs=14.9 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +..|-.|+.||..|.-...+ T Consensus 5 geKpy~C~~Cgk~F~~~s~L 24 (38) T 2dmd_A 5 SSGPHKCEVCGKCFSRKDKL 24 (38) T ss_dssp CCCCCCBTTTTBCCCCHHHH T ss_pred CCCCEECCCCCCCCCCHHHC T ss_conf 99398689999980855550 No 184 >>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} (A:) Probab=31.82 E-value=18 Score=17.34 Aligned_cols=12 Identities=8% Similarity=0.144 Sum_probs=7.5 Q ss_pred CCCCCCCEECHH Q ss_conf 277898715323 Q gi|254780459|r 28 VSPYTQNSWPLA 39 (129) Q Consensus 28 iCP~CG~e~~~~ 39 (129) .|+.||..|.-. T Consensus 4 ~C~~C~k~F~~~ 15 (33) T 1rim_A 4 ACPECPKRFMRS 15 (33) T ss_dssp CCSSSCCCCSSH T ss_pred CCCCCCCCCCHH T ss_conf 687777742637 No 185 >>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} (A:) Probab=31.74 E-value=17 Score=17.43 Aligned_cols=11 Identities=9% Similarity=0.138 Sum_probs=7.9 Q ss_pred CCCCCCCEECH Q ss_conf 27789871532 Q gi|254780459|r 28 VSPYTQNSWPL 38 (129) Q Consensus 28 iCP~CG~e~~~ 38 (129) .|+.||..|.- T Consensus 4 ~C~~Cgk~F~r 14 (29) T 1ard_A 4 VCEVCTRAFAR 14 (29) T ss_dssp BCTTTCCBCSS T ss_pred CCCCCCCCCCC T ss_conf 99899899887 No 186 >>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} (A:1-117) Probab=31.51 E-value=25 Score=16.37 Aligned_cols=10 Identities=10% Similarity=0.149 Sum_probs=4.0 Q ss_pred CCCCCCCEEE Q ss_conf 1788887442 Q gi|254780459|r 11 TCPDTGKRFY 20 (129) Q Consensus 11 ~C~~Cg~KFY 20 (129) .|+.||..|- T Consensus 27 ~C~~Cgk~F~ 36 (117) T 2rpc_A 27 PKKSCDRTFS 36 (117) T ss_dssp SCCCCCCCBS T ss_pred CCCCCCCCCC T ss_conf 7888887219 No 187 >>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} (A:) Probab=31.43 E-value=21 Score=16.86 Aligned_cols=19 Identities=0% Similarity=-0.122 Sum_probs=14.2 Q ss_pred CCCCCCCCCCCCEECHHHH Q ss_conf 8887227789871532331 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~ 41 (129) +..|-.|+.||..|.-... T Consensus 9 gekpy~C~~Cgk~F~~~s~ 27 (46) T 2ely_A 9 GEKPFKCVECGKGFSRRSA 27 (46) T ss_dssp CCCSBCCSSSCCCBSSTTH T ss_pred CCCCEECCCCCCCCCCHHH T ss_conf 9689289999983563888 No 188 >>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} (A:73-125) Probab=31.05 E-value=28 Score=16.06 Aligned_cols=24 Identities=17% Similarity=-0.007 Sum_probs=17.4 Q ss_pred CCCCCEEEECCCCCCCCCCCCCEEC Q ss_conf 8888744214888722778987153 Q gi|254780459|r 13 PDTGKRFYDLNKQVIVSPYTQNSWP 37 (129) Q Consensus 13 ~~Cg~KFYDlnk~PiiCP~CG~e~~ 37 (129) ..|+++|.=|+| .-.|..||..|= T Consensus 1 m~C~~~F~~~~r-khhCr~CG~v~C 24 (53) T 1joc_A 1 MACGKGFSVTVR-RHHCRQCGNIFC 24 (53) T ss_dssp TTTCCBCCSSSC-CEECTTTCCEEC T ss_pred CCCCHHHHCCCC-CCCCCCCCCEEC T ss_conf 370935660377-856422796059 No 189 >>2yww_A Aspartate carbamoyltransferase regulatory chain; ATP complex, structural genomics, NPPSFA; HET: ATP; 2.00A {Methanocaldococcus jannaschii} (A:98-149) Probab=31.01 E-value=18 Score=17.24 Aligned_cols=23 Identities=13% Similarity=0.040 Sum_probs=19.7 Q ss_pred CCEEEECCCCCCC--CCCCCCEECH Q ss_conf 8744214888722--7789871532 Q gi|254780459|r 16 GKRFYDLNKQVIV--SPYTQNSWPL 38 (129) Q Consensus 16 g~KFYDlnk~Pii--CP~CG~e~~~ 38 (129) .++||=.++.|++ |=||+..|.- T Consensus 24 ~~~F~~~~~~~~~lrC~YCe~~~~~ 48 (52) T 2yww_A 24 RGKFKIESKNPLKIRCYYCEKFLNE 48 (52) T ss_dssp CCEEEEEEETTEEEEETTTCCBCSS T ss_pred CCEEEEECCCCCEEEEECCCCCCHH T ss_conf 8438996089989980789989112 No 190 >>3jq1_A SUSD superfamily protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482} (A:421-461) Probab=30.89 E-value=4.8 Score=20.81 Aligned_cols=10 Identities=60% Similarity=1.208 Sum_probs=7.5 Q ss_pred CCEEEECCCC Q ss_conf 8744214888 Q gi|254780459|r 16 GKRFYDLNKQ 25 (129) Q Consensus 16 g~KFYDlnk~ 25 (129) |-|||||.|- T Consensus 1 gerfydlrrw 10 (41) T 3jq1_A 1 GERFYDLRRW 10 (41) T ss_dssp TCHHHHHHHH T ss_pred CCHHHHHHCC T ss_conf 7589999713 No 191 >>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=30.87 E-value=20 Score=16.95 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=15.6 Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCEE Q ss_conf 83117888874421488872277898715 Q gi|254780459|r 8 TKRTCPDTGKRFYDLNKQVIVSPYTQNSW 36 (129) Q Consensus 8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~ 36 (129) ..++|--||. ..-..||.||+-| T Consensus 11 ~~~~C~vC~~------~~kY~Cp~C~~~y 33 (56) T 2yqq_A 11 STVVCVICLE------KPKYRCPACRVPY 33 (56) T ss_dssp CCCCCTTTCS------CCSEECTTTCCEE T ss_pred CCCEECCCCC------CCCCCCCCCCCCC T ss_conf 9847057989------9965789989964 No 192 >>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} (A:) Probab=30.77 E-value=20 Score=17.06 Aligned_cols=11 Identities=9% Similarity=0.159 Sum_probs=7.3 Q ss_pred CCCCCCCEECH Q ss_conf 27789871532 Q gi|254780459|r 28 VSPYTQNSWPL 38 (129) Q Consensus 28 iCP~CG~e~~~ 38 (129) -||.||..|.- T Consensus 22 ~c~~CgK~F~~ 32 (47) T 1ncs_A 22 LFPGCTKTFKR 32 (47) T ss_dssp CCTTCCCEECS T ss_pred CCCCCCCCCCC T ss_conf 88899984576 No 193 >>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A (A:) Probab=30.60 E-value=18 Score=17.28 Aligned_cols=11 Identities=27% Similarity=0.353 Sum_probs=7.0 Q ss_pred CCCCCCCCEEC Q ss_conf 22778987153 Q gi|254780459|r 27 IVSPYTQNSWP 37 (129) Q Consensus 27 iiCP~CG~e~~ 37 (129) -.||+|+..|+ T Consensus 4 ~~CPKC~~~~P 14 (28) T 2jvx_A 4 FCCPKCQYQAP 14 (28) T ss_dssp EECTTSSCEES T ss_pred CCCCCCCCCCC T ss_conf 33762012489 No 194 >>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} (A:) Probab=30.58 E-value=39 Score=15.19 Aligned_cols=25 Identities=12% Similarity=0.145 Sum_probs=18.9 Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCE Q ss_conf 8311788887442148887227789871 Q gi|254780459|r 8 TKRTCPDTGKRFYDLNKQVIVSPYTQNS 35 (129) Q Consensus 8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~e 35 (129) .|.||-.|++++. -.-.-|=+||.. T Consensus 18 ~k~ICrkC~Ar~p---~~A~~CRKCg~t 42 (56) T 2ayj_A 18 LKKVCRKCGALNP---IRATKCRRCHST 42 (56) T ss_dssp CCEEETTTCCEEC---TTCSSCTTTCCC T ss_pred HHHHHHHCCCCCC---CCCCCCCCCCCC T ss_conf 1598865036698---555635657998 No 195 >>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=30.31 E-value=24 Score=16.46 Aligned_cols=20 Identities=0% Similarity=-0.069 Sum_probs=14.7 Q ss_pred CCCCCCCCCCCCCEECHHHH Q ss_conf 48887227789871532331 Q gi|254780459|r 22 LNKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 22 lnk~PiiCP~CG~e~~~~~~ 41 (129) .+..|-.|+.||..|.-... T Consensus 8 tgekp~~C~~Cgk~F~~~s~ 27 (46) T 2em2_A 8 SGEKPFKCKECGKAFRQNIH 27 (46) T ss_dssp CCCCSEECSSSCCEESSHHH T ss_pred CCCCCEECCCCCCCCCCHHH T ss_conf 89979688999998588899 No 196 >>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=30.14 E-value=25 Score=16.41 Aligned_cols=20 Identities=5% Similarity=-0.067 Sum_probs=14.7 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +..|-.|+.||..|.-...+ T Consensus 9 gekp~~C~~C~k~F~~~s~L 28 (46) T 2em5_A 9 STKSHQCHECGRGFTLKSHL 28 (46) T ss_dssp CSCSEECSSSCCEESSHHHH T ss_pred CCCCEECCCCCCCCCCHHHH T ss_conf 99645849998888875681 No 197 >>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} (A:) Probab=30.13 E-value=26 Score=16.33 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=18.2 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCEEC Q ss_conf 178888744214888722778987153 Q gi|254780459|r 11 TCPDTGKRFYDLNKQVIVSPYTQNSWP 37 (129) Q Consensus 11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~ 37 (129) .||.||+.. -+++.=+.||+|+.-.. T Consensus 4 ~Cp~c~~~l-~~~~~~~~~~~~~~~~~ 29 (269) T 1p91_A 4 SCPLCHQPL-SREKNSYICPQRHQFDX 29 (269) T ss_dssp BCTTTCCBC-EEETTEEECTTCCEEEB T ss_pred ECCCCCHHH-HCCCCEEEECCCCCCCC T ss_conf 488998044-16798799389963165 No 198 >>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A (A:) Probab=29.90 E-value=26 Score=16.31 Aligned_cols=18 Identities=6% Similarity=-0.058 Sum_probs=13.5 Q ss_pred CCCCCCCCCCCCEECHHH Q ss_conf 888722778987153233 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~ 40 (129) +..|-.|+.||..|.-.. T Consensus 8 gekpy~C~~Cgk~F~~~s 25 (42) T 2epc_A 8 GETPYLCGQCGKSFTQRG 25 (42) T ss_dssp SSCCEECSSSCCEESSHH T ss_pred CCCCEEECCCCCCCCCHH T ss_conf 998957489996334356 No 199 >>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=29.55 E-value=23 Score=16.68 Aligned_cols=19 Identities=0% Similarity=-0.102 Sum_probs=14.2 Q ss_pred CCCCCCCCCCCCEECHHHH Q ss_conf 8887227789871532331 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~ 41 (129) +..|-.|+.||..|.-... T Consensus 9 gekp~~C~~Cgk~F~~~s~ 27 (46) T 2emz_A 9 GERPFKCNECGKGFGRRSH 27 (46) T ss_dssp CCCSCCCSSSCCCCSSHHH T ss_pred CCCCEECCCCCCCCCCHHH T ss_conf 9888178989942432477 No 200 >>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=29.54 E-value=27 Score=16.19 Aligned_cols=19 Identities=0% Similarity=-0.104 Sum_probs=14.1 Q ss_pred CCCCCCCCCCCCEECHHHH Q ss_conf 8887227789871532331 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~ 41 (129) +..|-.|+.||..|.-... T Consensus 9 gekpy~C~~Cgk~F~~~s~ 27 (46) T 2ytp_A 9 GERHYECSECGKAFARKST 27 (46) T ss_dssp CCCCEECSSSCCEESSHHH T ss_pred CCCCEECCCCCCCCCCHHH T ss_conf 9889588999983273889 No 201 >>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=29.47 E-value=20 Score=17.01 Aligned_cols=20 Identities=5% Similarity=0.001 Sum_probs=14.9 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +..|-.|+.||..|.-...+ T Consensus 9 gekpy~C~~Cgk~F~~~~~l 28 (46) T 2eoz_A 9 GEKPYSCNVCGKAFVLSAHL 28 (46) T ss_dssp SCCSEEETTTTEEESSHHHH T ss_pred CCCCEECCCCCCEECCHHHH T ss_conf 98883779999462337889 No 202 >>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} (C:31-58) Probab=29.47 E-value=20 Score=16.94 Aligned_cols=16 Identities=6% Similarity=-0.176 Sum_probs=9.2 Q ss_pred CCCCCCCCEECHHHHH Q ss_conf 2277898715323310 Q gi|254780459|r 27 IVSPYTQNSWPLAYFE 42 (129) Q Consensus 27 iiCP~CG~e~~~~~~~ 42 (129) -+|-.||..|...+.+ T Consensus 5 hvcaecgkaf~esskl 20 (28) T 1ubd_C 5 HVCAECGKAFVESSKL 20 (28) T ss_dssp EECTTTCCEESSHHHH T ss_pred CCCCCCCCCCCCCCCC T ss_conf 2215544322111221 No 203 >>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} (A:43-77) Probab=29.39 E-value=26 Score=16.28 Aligned_cols=18 Identities=0% Similarity=-0.138 Sum_probs=13.1 Q ss_pred CCCCCCCCCCCEECHHHH Q ss_conf 887227789871532331 Q gi|254780459|r 24 KQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 24 k~PiiCP~CG~e~~~~~~ 41 (129) -.|-.|+.||..|.-... T Consensus 2 EKp~~C~~Cgk~F~~~s~ 19 (35) T 2cot_A 2 EKPYKCDECGKAFIQRSH 19 (35) T ss_dssp SCSEECSSSCCEESSHHH T ss_pred CCCCCCCCCCCCCCCHHH T ss_conf 111123546750157899 No 204 >>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=29.23 E-value=40 Score=15.16 Aligned_cols=34 Identities=9% Similarity=-0.007 Sum_probs=23.0 Q ss_pred HHCCCCCCCCCCCEEEECCCCCCCCCCCCCEECHHHHH Q ss_conf 22783117888874421488872277898715323310 Q gi|254780459|r 5 ELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 5 elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~ 42 (129) .+.....|+-|-..| +.|++++.||+.|--.=+. T Consensus 11 ~~~~~~~C~IC~~~~----~~~v~~~~CgH~fc~~Ci~ 44 (72) T 2djb_A 11 ELTPYILCSICKGYL----IDATTITECLHTFCKSCIV 44 (72) T ss_dssp CCCGGGSCTTTSSCC----SSCEECSSSCCEECHHHHH T ss_pred HCCCCCEEEECCCCC----CCCEEECCCCCEECHHHHH T ss_conf 689999916159511----0983978999757629999 No 205 >>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, ATP-binding cassette, cytoplasm; HET: ADP; 3.20A {Geobacillus stearothermophilus 10} (A:144-290) Probab=29.22 E-value=20 Score=16.96 Aligned_cols=13 Identities=23% Similarity=0.082 Sum_probs=9.3 Q ss_pred CCCCCCCCCEECH Q ss_conf 7227789871532 Q gi|254780459|r 26 VIVSPYTQNSWPL 38 (129) Q Consensus 26 PiiCP~CG~e~~~ 38 (129) -..||.||..|+. T Consensus 124 ~~~C~~~g~~~~e 136 (147) T 2r6f_A 124 KHACPYCGFSIGE 136 (147) T ss_dssp SEECTTTCCEEEC T ss_pred CCCCCCCCCCHHH T ss_conf 0367667860211 No 206 >>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:34-78) Probab=29.19 E-value=22 Score=16.77 Aligned_cols=10 Identities=0% Similarity=0.172 Sum_probs=5.9 Q ss_pred CCCCCCCEEC Q ss_conf 2778987153 Q gi|254780459|r 28 VSPYTQNSWP 37 (129) Q Consensus 28 iCP~CG~e~~ 37 (129) .|-.||.-|. T Consensus 7 ~Ce~CgKrFE 16 (45) T 2d9h_A 7 PCEFCGKRFE 16 (45) T ss_dssp ECTTTCCEES T ss_pred CCCCCCCCCC T ss_conf 1003432434 No 207 >>3i1n_1 50S ribosomal protein L33; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_1 1vs6_1 3i1p_1 3i1r_1 3i1t_1 3i20_1 3i22_1 2qam_1* 1p85_1 1p86_1 2awb_1 2aw4_1 2i2v_1 2j28_1 2i2t_1* 2qao_1* 2qba_1* 2qbc_1* 2qbe_1 2qbg_1 ... (1:) Probab=29.07 E-value=32 Score=15.73 Aligned_cols=35 Identities=23% Similarity=0.216 Sum_probs=25.2 Q ss_pred CCCHH-HCCCCCCCCCCCEEEECCCCCC----------CCCCCCCE Q ss_conf 97522-2783117888874421488872----------27789871 Q gi|254780459|r 1 MAKPE-LGTKRTCPDTGKRFYDLNKQVI----------VSPYTQNS 35 (129) Q Consensus 1 MaK~e-lG~KR~C~~Cg~KFYDlnk~Pi----------iCP~CG~e 35 (129) |||.- ...+-.|..||.+||=-.|.+- -||.|+.- T Consensus 1 Mak~~r~~i~L~ct~c~~~nY~T~KN~~~~~~rLel~Kycp~~~kh 46 (55) T 3i1n_1 1 MAKGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQH 46 (55) T ss_dssp ---CCCBCCCEEESSSSCCEECCCBCSSSCCSCCCEEEEETTTTEE T ss_pred CCCCCCCEEEEEEECCCCEEEEECCCCCCCCHHEEEECCCCCCCCE T ss_conf 9976551699998288881797647888994144897418787856 No 208 >>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} (A:131-166) Probab=29.06 E-value=26 Score=16.34 Aligned_cols=20 Identities=10% Similarity=0.054 Sum_probs=14.3 Q ss_pred CCCCCCCCC--CCCEECHHHHH Q ss_conf 888722778--98715323310 Q gi|254780459|r 23 NKQVIVSPY--TQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~--CG~e~~~~~~~ 42 (129) |-.|-.|+. ||..|.-..-+ T Consensus 1 nEkpf~C~~~gC~k~F~~~~~L 22 (36) T 1tf6_A 1 QQLPYECPHEGCDKRFSLPSRL 22 (36) T ss_dssp SSCSSBCCSSSCCCBCSSHHHH T ss_pred CCCCCCCCCCCCCCCEECCCCC T ss_conf 4576311234456410115573 No 209 >>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=28.63 E-value=25 Score=16.37 Aligned_cols=28 Identities=4% Similarity=0.076 Sum_probs=14.6 Q ss_pred CCCCCCCEEEEC-------CCCCCCCCCCCCEECH Q ss_conf 178888744214-------8887227789871532 Q gi|254780459|r 11 TCPDTGKRFYDL-------NKQVIVSPYTQNSWPL 38 (129) Q Consensus 11 ~C~~Cg~KFYDl-------nk~PiiCP~CG~e~~~ 38 (129) .|..|+-+|==- .+....||.|.+.|.. T Consensus 36 ~~~~C~h~fh~~Cl~~W~~~~~~~~CP~Cr~~~~~ 70 (80) T 2d8s_A 36 HCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80) T ss_dssp SCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC T ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEE T ss_conf 45885200869799999802797868688982176 No 210 >>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (Z:) Probab=28.54 E-value=24 Score=16.53 Aligned_cols=29 Identities=17% Similarity=0.579 Sum_probs=21.1 Q ss_pred CCCCCCCCCCCEEEECCCC---CCCCCCCCCEEC Q ss_conf 7831178888744214888---722778987153 Q gi|254780459|r 7 GTKRTCPDTGKRFYDLNKQ---VIVSPYTQNSWP 37 (129) Q Consensus 7 G~KR~C~~Cg~KFYDlnk~---PiiCP~CG~e~~ 37 (129) -.|.+||.||.. -+.|. -=.|-+||..|. T Consensus 25 ~aky~C~fCgk~--~vkR~~~GIW~C~~C~~~~A 56 (83) T 1vq8_Z 25 NEDHACPNCGED--RVDRQGTGIWQCSYCDYKFT 56 (83) T ss_dssp HSCEECSSSCCE--EEEEEETTEEEETTTCCEEE T ss_pred HCCCCCCCCCCC--CEEEEEEEEEECCCCCCEEE T ss_conf 079519898997--12888888878899999872 No 211 >>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=28.41 E-value=29 Score=16.00 Aligned_cols=20 Identities=0% Similarity=-0.089 Sum_probs=14.7 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +..|-.|+.||..|.-...+ T Consensus 9 gekpy~C~~C~k~F~~~s~L 28 (46) T 2emh_A 9 GERPYICTVCGKAFTDRSNL 28 (46) T ss_dssp CCCSEECTTTCCEESSHHHH T ss_pred CCCCEECCCCCCCCCCHHHH T ss_conf 99897899899841407888 No 212 >>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=28.40 E-value=22 Score=16.71 Aligned_cols=15 Identities=0% Similarity=0.040 Sum_probs=12.4 Q ss_pred CCCCCCCCCCEECHH Q ss_conf 872277898715323 Q gi|254780459|r 25 QVIVSPYTQNSWPLA 39 (129) Q Consensus 25 ~PiiCP~CG~e~~~~ 39 (129) -|++|.+||..|=+. T Consensus 26 lp~~C~~C~~~fC~~ 40 (63) T 1x4v_A 26 MKLTCERCSRNFCIK 40 (63) T ss_dssp SCCBCSSSCCBCCHH T ss_pred CCEECCCCCCCHHHC T ss_conf 020753328512052 No 213 >>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, Zn-binding protein, DNA-binding, transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A (A:) Probab=28.24 E-value=21 Score=16.92 Aligned_cols=33 Identities=15% Similarity=0.130 Sum_probs=20.0 Q ss_pred CCCCCC-CEEE--------ECC------C-CC-CCCCCCCCEE-CHHHHHC Q ss_conf 178888-7442--------148------8-87-2277898715-3233101 Q gi|254780459|r 11 TCPDTG-KRFY--------DLN------K-QV-IVSPYTQNSW-PLAYFEA 43 (129) Q Consensus 11 ~C~~Cg-~KFY--------Dln------k-~P-iiCP~CG~e~-~~~~~~~ 43 (129) .||.|| ..+. .++ + -| .+|+.||..| .++.+.+ T Consensus 4 kCp~Cg~g~l~~~~~~~~~~y~G~~~~I~~vp~~~C~~CGE~~~~~e~~~~ 54 (78) T 3ga8_A 4 KCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMNKEESDA 54 (78) T ss_dssp BCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEETTTCCEECCHHHHHH T ss_pred CCCCCCCCEEECCEEEEEEEECCEEEEECCCCCCCCCCCCCEEECHHHHHH T ss_conf 088589814364405558998989999767675427999877748999999 No 214 >>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=28.09 E-value=28 Score=16.09 Aligned_cols=21 Identities=10% Similarity=-0.088 Sum_probs=15.4 Q ss_pred CCCCCCCCCCCCCEECHHHHH Q ss_conf 488872277898715323310 Q gi|254780459|r 22 LNKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 22 lnk~PiiCP~CG~e~~~~~~~ 42 (129) .+..|-.|+.||..|.-...+ T Consensus 8 tgekpy~C~~Cgk~F~~~~~L 28 (46) T 2em9_A 8 TGEKPYNCKECGKSFRWASCL 28 (46) T ss_dssp CCCCSEECSSSCCEESSHHHH T ss_pred CCCCCEECCCCCCCCCCHHHH T ss_conf 899893889899954418888 No 215 >>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=28.08 E-value=27 Score=16.18 Aligned_cols=19 Identities=0% Similarity=-0.038 Sum_probs=14.7 Q ss_pred CCCCCCCCCCCCCEECHHH Q ss_conf 4888722778987153233 Q gi|254780459|r 22 LNKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 22 lnk~PiiCP~CG~e~~~~~ 40 (129) .++.|-.|+.||..|.-.. T Consensus 8 tgekp~~C~~C~k~F~~~~ 26 (46) T 2enh_A 8 TGEKPYECDVCRKAFSHHA 26 (46) T ss_dssp CCSSSCBCTTTCCBCSSSH T ss_pred CCCCCEECCCCCCEECCHH T ss_conf 8986978898798707378 No 216 >>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=27.84 E-value=25 Score=16.38 Aligned_cols=20 Identities=5% Similarity=-0.112 Sum_probs=14.6 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +..|-.|+.||..|.-...+ T Consensus 9 gekpf~C~~C~k~F~~~s~L 28 (44) T 2eou_A 9 AKTTSECQECGKIFRHSSLL 28 (44) T ss_dssp SSCCCCCTTTCCCCSSHHHH T ss_pred CCCCEECCCCCCEECCCHHH T ss_conf 88784289887605861223 No 217 >>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} (A:) Probab=27.76 E-value=17 Score=17.46 Aligned_cols=28 Identities=21% Similarity=0.647 Sum_probs=12.9 Q ss_pred CCCCCCCCCE---EEECCCC----C----CCCCCCCCEE Q ss_conf 3117888874---4214888----7----2277898715 Q gi|254780459|r 9 KRTCPDTGKR---FYDLNKQ----V----IVSPYTQNSW 36 (129) Q Consensus 9 KR~C~~Cg~K---FYDlnk~----P----iiCP~CG~e~ 36 (129) +..||.||.+ ||=+--. | .+|.+||..| T Consensus 15 ~~~C~~C~~~~a~f~q~Q~RsaDE~~T~fy~C~~C~~~w 53 (57) T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTW 53 (57) T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEE T ss_pred CCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCC T ss_conf 489989979815999853033677875999928989865 No 218 >>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=27.65 E-value=37 Score=15.33 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=16.7 Q ss_pred HHCCCCCCCCCCCEEEECCCCCCCCCCCCC Q ss_conf 227831178888744214888722778987 Q gi|254780459|r 5 ELGTKRTCPDTGKRFYDLNKQVIVSPYTQN 34 (129) Q Consensus 5 elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~ 34 (129) .+-..++|+.|.-.=+-=+..+-.||.|+- T Consensus 24 ~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G 53 (104) T 2ctt_A 24 TVNIMDTCERCNGKGNEPGTKVQHCHYCGG 53 (104) T ss_dssp CSSCCEECSSSSSSSSCTTCCCEECSSSSS T ss_pred EECCCCCCCCCCCCCCCCCCCCEECCCCCE T ss_conf 651443468644640124555400475450 No 219 >>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=27.62 E-value=29 Score=15.98 Aligned_cols=20 Identities=0% Similarity=-0.119 Sum_probs=14.8 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) ...|-.|+.||..|.-...+ T Consensus 9 geKpy~C~~C~k~F~~~~~L 28 (46) T 2eml_A 9 GEKPYECSVCGKAFSHRQSL 28 (46) T ss_dssp SCCSEECSSSCCEESSHHHH T ss_pred CCCCEECCCCCCCCCCHHHH T ss_conf 99897889889830728897 No 220 >>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=27.55 E-value=30 Score=15.90 Aligned_cols=20 Identities=0% Similarity=-0.179 Sum_probs=14.3 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) ...|-.|..||..|.-..-+ T Consensus 8 gekpy~C~~Cgk~F~~~s~L 27 (42) T 2ytb_A 8 GEKPYRCDQCGKAFSQKGSL 27 (42) T ss_dssp SCCSBCCTTTTCCBSSHHHH T ss_pred CCCCEECCCCCCCCCCHHHH T ss_conf 99798789999977767887 No 221 >>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=27.49 E-value=28 Score=16.12 Aligned_cols=17 Identities=6% Similarity=-0.095 Sum_probs=13.4 Q ss_pred CCCCCCCCCCCCEECHH Q ss_conf 88872277898715323 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLA 39 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~ 39 (129) +..|-.|+.||..|.-. T Consensus 9 gekpy~C~~Cgk~F~~~ 25 (47) T 2epx_A 9 GKKPYECIECGKAFIQN 25 (47) T ss_dssp CCCSBCCSSSCCCBSSH T ss_pred CCCCEECCCCCCEECCC T ss_conf 99897459999170674 No 222 >>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=27.46 E-value=29 Score=16.05 Aligned_cols=21 Identities=5% Similarity=-0.137 Sum_probs=15.4 Q ss_pred CCCCCCCCCCCCCEECHHHHH Q ss_conf 488872277898715323310 Q gi|254780459|r 22 LNKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 22 lnk~PiiCP~CG~e~~~~~~~ 42 (129) .+..|-.|..||..|.-...+ T Consensus 8 tgekpy~C~~Cgk~F~~~s~l 28 (44) T 2eof_A 8 TGEKPYECNECQKAFNTKSNL 28 (44) T ss_dssp SCCCSEECTTTCCEESCHHHH T ss_pred CCCCCEECCCCCCEECCHHHH T ss_conf 799694789879885987785 No 223 >>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=27.42 E-value=26 Score=16.26 Aligned_cols=20 Identities=5% Similarity=-0.016 Sum_probs=15.0 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +..|-.|+.||..|.-...+ T Consensus 9 gekp~~C~~C~k~F~~~s~L 28 (44) T 2en7_A 9 GMKPYVCNECGKAFRSKSYL 28 (44) T ss_dssp SSSSSCCTTTCCCCSSHHHH T ss_pred CCCCEECCCCCCEECCHHHH T ss_conf 98886429998380787785 No 224 >>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=27.32 E-value=29 Score=16.01 Aligned_cols=19 Identities=0% Similarity=-0.268 Sum_probs=14.0 Q ss_pred CCCCCCCCCCCCEECHHHH Q ss_conf 8887227789871532331 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~ 41 (129) +..|-.|+.||..|.-... T Consensus 9 gekp~~C~~Cgk~F~~~s~ 27 (46) T 2yso_A 9 REKSHQCRECGEIFFQYVS 27 (46) T ss_dssp CCCCEECTTTCCEESSHHH T ss_pred CCCCEECCCCCCCCCCCHH T ss_conf 9969578998998444177 No 225 >>2ckl_A Polycomb group ring finger protein 4; BMI1, zinc, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 2h0d_A (A:1-84) Probab=27.28 E-value=27 Score=16.17 Aligned_cols=31 Identities=13% Similarity=0.069 Sum_probs=21.1 Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCCEECHHHH Q ss_conf 78311788887442148887227789871532331 Q gi|254780459|r 7 GTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 7 G~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~ 41 (129) =....||-|-..| ++|++++.||+.|--.=+ T Consensus 13 ~~~~~C~IC~~~~----~~pv~~~~CgH~fc~~Ci 43 (84) T 2ckl_A 13 NPHLMCVLCGGYF----IDATTIIECLHSFCKTCI 43 (84) T ss_dssp GGGTBCTTTSSBC----SSEEEETTTCCEEEHHHH T ss_pred CCCCCCCCCCHHH----HCCCCCCCCCCCCHHHHH T ss_conf 9999997789565----378768999974379999 No 226 >>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, apoptosis, cytoplasm, metal-binding, nucleus, phosphoprotein, transcription; 1.80A {Homo sapiens} (A:) Probab=27.04 E-value=25 Score=16.40 Aligned_cols=20 Identities=0% Similarity=-0.209 Sum_probs=13.2 Q ss_pred CCCCCCCCCCCEECHHHHHC Q ss_conf 88722778987153233101 Q gi|254780459|r 24 KQVIVSPYTQNSWPLAYFEA 43 (129) Q Consensus 24 k~PiiCP~CG~e~~~~~~~~ 43 (129) ..|-.|+-||.-|---.-++ T Consensus 5 ~KPy~C~vCgKrYKN~~GL~ 24 (48) T 3iuf_A 5 DKPYACDICGKRYKNRPGLS 24 (48) T ss_dssp TSCEECTTTCCEESSHHHHH T ss_pred CCCCCCHHHHHHHCCCCCCH T ss_conf 77611504555543787620 No 227 >>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=27.03 E-value=29 Score=16.03 Aligned_cols=18 Identities=0% Similarity=0.006 Sum_probs=13.7 Q ss_pred CCCCCCCCCCCCEECHHH Q ss_conf 888722778987153233 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~ 40 (129) ...|-.|+.||..|.-.. T Consensus 9 gekp~~C~~Cgk~F~~~s 26 (46) T 2emg_A 9 GENPFICSECGKVFTHKT 26 (46) T ss_dssp SCCSCBCTTTCCBCSSHH T ss_pred CCCCEECCCCCCCCCCHH T ss_conf 998978999998306188 No 228 >>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=26.98 E-value=30 Score=15.93 Aligned_cols=20 Identities=5% Similarity=-0.104 Sum_probs=14.7 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +..|-.|+.||..|.-...+ T Consensus 9 gekpy~C~~Cgk~F~~~s~L 28 (46) T 2eop_A 9 GEKPHECRECGKSFSFNSQL 28 (46) T ss_dssp CCCSCBCTTTCCBCSSHHHH T ss_pred CCCCEECCCCCCEECCHHHH T ss_conf 99895889999730707785 No 229 >>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=26.83 E-value=32 Score=15.72 Aligned_cols=20 Identities=0% Similarity=-0.152 Sum_probs=14.7 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +..|-.|+.||..|.-...+ T Consensus 9 gekpy~C~~Cgk~F~~~~~l 28 (46) T 2ytk_A 9 GEKPYKCNECGKVFTQNSHL 28 (46) T ss_dssp SSCSEECSSSCCEESSHHHH T ss_pred CCCCEECCCCCCCCCCHHHH T ss_conf 98997899999855777887 No 230 >>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=26.75 E-value=31 Score=15.85 Aligned_cols=19 Identities=0% Similarity=-0.074 Sum_probs=14.1 Q ss_pred CCCCCCCCCCCCEECHHHH Q ss_conf 8887227789871532331 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~ 41 (129) ...|-.|+.||..|.-... T Consensus 9 geKp~~C~~Cgk~F~~~~~ 27 (44) T 2epv_A 9 GEKPYECNECGKAFIWKSL 27 (44) T ss_dssp CCCSEECSSSCCEESSHHH T ss_pred CCCCEECCCCCCCCCCCHH T ss_conf 9889836999808456232 No 231 >>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} (A:) Probab=26.73 E-value=31 Score=15.82 Aligned_cols=20 Identities=0% Similarity=-0.197 Sum_probs=14.6 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) ...|-.|+.||..|.-...+ T Consensus 7 gekpy~C~~Cgk~F~~~s~L 26 (42) T 2el5_A 7 GENPYECSECGKAFNRKDQL 26 (42) T ss_dssp SCCSEECSSSCCEESSHHHH T ss_pred CCCCEECCCCCCEECCHHHH T ss_conf 99798789889851765786 No 232 >>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=26.72 E-value=31 Score=15.82 Aligned_cols=21 Identities=0% Similarity=-0.227 Sum_probs=14.9 Q ss_pred CCCCCCCCCCCCCEECHHHHH Q ss_conf 488872277898715323310 Q gi|254780459|r 22 LNKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 22 lnk~PiiCP~CG~e~~~~~~~ 42 (129) .+..|-.|+.||..|.-...+ T Consensus 8 tgekpy~C~~Cgk~F~~~s~L 28 (46) T 2em8_A 8 SGEKPYKCVECGKGYKRRLDL 28 (46) T ss_dssp CSCCSEECSSSCCEESSHHHH T ss_pred CCCCCEECCCCCEEEECCCCC T ss_conf 898883889899771215553 No 233 >>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=26.67 E-value=32 Score=15.78 Aligned_cols=19 Identities=0% Similarity=-0.127 Sum_probs=14.0 Q ss_pred CCCCCCCCCCCCCEECHHH Q ss_conf 4888722778987153233 Q gi|254780459|r 22 LNKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 22 lnk~PiiCP~CG~e~~~~~ 40 (129) ....|-.|+.||..|.-.. T Consensus 8 tgekpy~C~~Cgk~F~~~s 26 (46) T 2epw_A 8 TGEKPCKCTECGKAFCWKS 26 (46) T ss_dssp CCCCSEECSSSCCEESSSH T ss_pred CCCCCEECCCCCEECCCHH T ss_conf 8998958499982414668 No 234 >>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=26.49 E-value=32 Score=15.71 Aligned_cols=20 Identities=0% Similarity=-0.172 Sum_probs=14.7 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +..|-.|+.||..|.-...+ T Consensus 9 gekpy~C~~C~k~F~~~~~l 28 (46) T 2en8_A 9 GEKSHTCDECGKNFCYISAL 28 (46) T ss_dssp CCSSEECTTTCCEESSHHHH T ss_pred CCCCEECCCCCCCCCCHHHH T ss_conf 98894789189856537887 No 235 >>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} (C:59-88) Probab=26.36 E-value=31 Score=15.81 Aligned_cols=19 Identities=5% Similarity=0.207 Sum_probs=12.7 Q ss_pred CCCCCCCC--CCCEECHHHHH Q ss_conf 88722778--98715323310 Q gi|254780459|r 24 KQVIVSPY--TQNSWPLAYFE 42 (129) Q Consensus 24 k~PiiCP~--CG~e~~~~~~~ 42 (129) -.|-.||. ||..|.-..-+ T Consensus 2 ekPy~C~~~gCgk~F~~~s~L 22 (30) T 1ubd_C 2 EKPFQCTFEGCGKRFSLDFNL 22 (30) T ss_dssp CCCEECCSTTCCCEESCHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCC T ss_conf 221111123333221211202 No 236 >>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=26.25 E-value=30 Score=15.90 Aligned_cols=20 Identities=5% Similarity=-0.178 Sum_probs=15.1 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +..|-.|+.||..|.-...+ T Consensus 9 gekpy~C~~Cgk~F~~~s~l 28 (46) T 2ep1_A 9 GEKPYECSDCGKSFIKKSQL 28 (46) T ss_dssp SCCSSCCSSSCCCCSSHHHH T ss_pred CCCCEECCCCCCEECCHHHH T ss_conf 98997889999800758897 No 237 >>2i13_A AART; DNA binding, zinc finger, DNA binding protein/DNA complex; 1.96A {Mus musculus} (A:74-102) Probab=25.86 E-value=28 Score=16.07 Aligned_cols=18 Identities=11% Similarity=0.030 Sum_probs=12.5 Q ss_pred CCCCCCCCCCCEECHHHH Q ss_conf 887227789871532331 Q gi|254780459|r 24 KQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 24 k~PiiCP~CG~e~~~~~~ 41 (129) -.|-.|+.||..|.-... T Consensus 2 Ekpy~C~~Cgk~F~~~s~ 19 (29) T 2i13_A 2 EKPYKCPECGKSFSQRAN 19 (29) T ss_dssp CCCEECTTTCCEESCHHH T ss_pred CCCCCCCCCCCCCCCHHH T ss_conf 878556667875688899 No 238 >>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:42-86) Probab=25.64 E-value=28 Score=16.07 Aligned_cols=16 Identities=6% Similarity=0.065 Sum_probs=11.2 Q ss_pred CCCCCCCCCCEECHHH Q ss_conf 8722778987153233 Q gi|254780459|r 25 QVIVSPYTQNSWPLAY 40 (129) Q Consensus 25 ~PiiCP~CG~e~~~~~ 40 (129) .-.+|-+||..|.... T Consensus 5 ~afvcskcgktftrrn 20 (45) T 1x6h_A 5 AAFVCSKCGKTFTRRN 20 (45) T ss_dssp CCEECSSSCCEESCHH T ss_pred CEEEEECCCCCCCCCC T ss_conf 0000000000000145 No 239 >>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} (A:42-77) Probab=25.57 E-value=25 Score=16.37 Aligned_cols=12 Identities=8% Similarity=0.022 Sum_probs=8.2 Q ss_pred CCCCCCCCEECH Q ss_conf 227789871532 Q gi|254780459|r 27 IVSPYTQNSWPL 38 (129) Q Consensus 27 iiCP~CG~e~~~ 38 (129) -.||-|++.+.. T Consensus 5 ~qCPHC~T~iAR 16 (36) T 2ct1_A 5 FHCPHCDTVIAR 16 (36) T ss_dssp EECSSSSCEESS T ss_pred EECCCCCCEECC T ss_conf 378899999699 No 240 >>1s1i_9 L37A, YL35, 60S ribosomal protein L43; 80S ribosome, 60S ribosomal subunit, EEF2, tRNA translocation, sordarin, cryo-EM; 11.70A {Saccharomyces cerevisiae} (9:) Probab=25.52 E-value=27 Score=16.21 Aligned_cols=30 Identities=10% Similarity=0.243 Sum_probs=21.3 Q ss_pred CCCCCCCCCCCEEEECCCC---CCCCCCCCCEECH Q ss_conf 7831178888744214888---7227789871532 Q gi|254780459|r 7 GTKRTCPDTGKRFYDLNKQ---VIVSPYTQNSWPL 38 (129) Q Consensus 7 G~KR~C~~Cg~KFYDlnk~---PiiCP~CG~e~~~ 38 (129) -.|.+||.||.. -+.|. --.|-+||..|.- T Consensus 33 ~aky~C~fCgk~--~vkR~a~GIW~C~~C~~~~AG 65 (91) T 1s1i_9 33 HARYDCSFCGKK--TVKRGAAGIWTCSCCKKTVAG 65 (91) T ss_dssp SSCCCCTTTCSS--CCCEETTTEECCSSSCCCEEC T ss_pred CCCCCCCCCCCC--EEEEEEEEEEECCCCCCEEEC T ss_conf 688239899997--348998888687999988867 No 241 >>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:40-72) Probab=25.50 E-value=30 Score=15.94 Aligned_cols=18 Identities=0% Similarity=-0.274 Sum_probs=12.5 Q ss_pred CCCCCCCCCCEECHHHHH Q ss_conf 872277898715323310 Q gi|254780459|r 25 QVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 25 ~PiiCP~CG~e~~~~~~~ 42 (129) .|-.|..||..|.-...+ T Consensus 2 Kpy~C~~CgK~F~~~s~L 19 (33) T 1x6e_A 2 KPYKCLECGKAFSQNSGL 19 (33) T ss_dssp CCEECSSSCCEESSHHHH T ss_pred ECEECCCCCCCCCCHHHH T ss_conf 010106578730888899 No 242 >>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} (A:1-41) Probab=25.50 E-value=33 Score=15.63 Aligned_cols=18 Identities=6% Similarity=0.235 Sum_probs=12.8 Q ss_pred CCCCCCCCC--CCCEECHHH Q ss_conf 888722778--987153233 Q gi|254780459|r 23 NKQVIVSPY--TQNSWPLAY 40 (129) Q Consensus 23 nk~PiiCP~--CG~e~~~~~ 40 (129) +..|-.||. ||..|.-.. T Consensus 12 gekpy~C~~~~C~K~F~~~s 31 (41) T 2ebt_A 12 KRRIHYCDYPGCTKVYTKSS 31 (41) T ss_dssp SCCCEECCSSSCCCEESCHH T ss_pred CCCCEECCCCCCCCEECCHH T ss_conf 97897788888997848888 No 243 >>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), zinc finger, DNA-binding protein; HET: DNA; 1.60A {Mus musculus} (A:1-30) Probab=25.50 E-value=30 Score=15.90 Aligned_cols=17 Identities=6% Similarity=0.059 Sum_probs=11.6 Q ss_pred CCCCCCC--CCCEECHHHH Q ss_conf 8722778--9871532331 Q gi|254780459|r 25 QVIVSPY--TQNSWPLAYF 41 (129) Q Consensus 25 ~PiiCP~--CG~e~~~~~~ 41 (129) .|-+||. ||..|.-..- T Consensus 3 kPy~C~~~gC~k~F~~~~~ 21 (30) T 1a1h_A 3 RPYACPVESCDRRFSQSGS 21 (30) T ss_dssp CCEECCSSSCCCEESSHHH T ss_pred CCCCCCCCCCCCCCCCHHH T ss_conf 8881995658899497667 No 244 >>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Simian mason-pfizer virus} (A:) Probab=25.42 E-value=29 Score=16.02 Aligned_cols=16 Identities=13% Similarity=-0.070 Sum_probs=11.5 Q ss_pred CCCCCCCCCCCCCEEC Q ss_conf 4888722778987153 Q gi|254780459|r 22 LNKQVIVSPYTQNSWP 37 (129) Q Consensus 22 lnk~PiiCP~CG~e~~ 37 (129) ....++.|+.||..-- T Consensus 26 ~~~~~~~C~~Cg~~GH 41 (60) T 1cl4_A 26 EPKVPGLCPRCKRGKH 41 (60) T ss_dssp ---CCCSCSSCSSCSS T ss_pred CCCCCCCCCCCCCCCC T ss_conf 8998981877899987 No 245 >>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (2:) Probab=25.40 E-value=42 Score=15.04 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=19.7 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCC Q ss_conf 1178888744214888722778987 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQVIVSPYTQN 34 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~PiiCP~CG~ 34 (129) -.|.-||.+=|-+.|. .|-+||. T Consensus 17 tlCrRCGr~syH~qK~--~CasCGy 39 (97) T 2zkr_2 17 TLCRRCGSKAYHLQKS--TCGKCGY 39 (97) T ss_dssp ECCTTTCSSCEETTSC--CBTTTCT T ss_pred CHHCCCCCHHHHHHCC--CCCCCCC T ss_conf 7210668623433022--2454688 No 246 >>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=25.38 E-value=33 Score=15.67 Aligned_cols=18 Identities=0% Similarity=-0.053 Sum_probs=13.8 Q ss_pred CCCCCCCCCCCCEECHHH Q ss_conf 888722778987153233 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~ 40 (129) +..|-.|+.||..|.-.. T Consensus 9 gekpy~C~~Cgk~F~~~s 26 (46) T 2emk_A 9 GEKPYECKECGKAFSQTT 26 (46) T ss_dssp SSCSCBCSSSCCBCSCHH T ss_pred CCCCEECCCCCCCCCCHH T ss_conf 998968999898327888 No 247 >>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=25.30 E-value=35 Score=15.50 Aligned_cols=21 Identities=5% Similarity=-0.134 Sum_probs=15.2 Q ss_pred CCCCCCCCCCCCCEECHHHHH Q ss_conf 488872277898715323310 Q gi|254780459|r 22 LNKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 22 lnk~PiiCP~CG~e~~~~~~~ 42 (129) ....|-.|+.||..|.-...+ T Consensus 8 tgeKpy~C~~Cgk~F~~~s~L 28 (46) T 2ytn_A 8 TGKKPYKCNECGKVFTQNSHL 28 (46) T ss_dssp SCCSSCBCTTTCCBCSSHHHH T ss_pred CCCCCEECCCCCCCCCCHHHH T ss_conf 899896789999831778897 No 248 >>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=25.23 E-value=34 Score=15.62 Aligned_cols=20 Identities=10% Similarity=0.052 Sum_probs=14.8 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +..|-.|+.||..|.-...+ T Consensus 9 g~kpf~C~~C~k~F~~~~~L 28 (44) T 2emb_A 9 TRKRYECSKCQATFNLRKHL 28 (44) T ss_dssp CCSSEECTTTCCEESCHHHH T ss_pred CCCCEECCCCCCCCCCHHHH T ss_conf 98794389898855315899 No 249 >>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} (A:) Probab=25.12 E-value=30 Score=15.92 Aligned_cols=20 Identities=5% Similarity=-0.135 Sum_probs=14.7 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +..|-.|+.||..|.-...+ T Consensus 9 gekp~~C~~Cgk~F~~~s~L 28 (46) T 2em0_A 9 GEKTWKCRECDMCFSQASSL 28 (46) T ss_dssp CCCCCCCSSSCCCCSSHHHH T ss_pred CCCCEECCCCCCCCCCHHHH T ss_conf 88893899999881866787 No 250 >>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} (A:) Probab=25.09 E-value=35 Score=15.52 Aligned_cols=20 Identities=5% Similarity=-0.140 Sum_probs=14.6 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +..|-.|+.||..|.-...+ T Consensus 9 gekpy~C~~C~k~F~~~s~L 28 (46) T 2el6_A 9 GVNPYKCSQCEKSFSGKLRL 28 (46) T ss_dssp CCCSEECSSSSCEESSHHHH T ss_pred CCCCEECCCCCCEECCHHHH T ss_conf 98897899999684867786 No 251 >>1nkw_1 50S ribosomal protein L33; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} (1:) Probab=25.09 E-value=27 Score=16.22 Aligned_cols=28 Identities=14% Similarity=0.133 Sum_probs=21.1 Q ss_pred CCCCCCCCCCCEEEECCCCCC----------CCCCCCC Q ss_conf 783117888874421488872----------2778987 Q gi|254780459|r 7 GTKRTCPDTGKRFYDLNKQVI----------VSPYTQN 34 (129) Q Consensus 7 G~KR~C~~Cg~KFYDlnk~Pi----------iCP~CG~ 34 (129) ..+-.|..||.+||=..|++- -||.|+. T Consensus 36 ~I~L~ct~c~~~nY~T~KNrk~~pekLeLkKYcP~~rk 73 (82) T 1nkw_1 36 IVKMESSAGTGFYYTTTKNRRNTQAKLELKKYDPVAKK 73 (82) T ss_pred EEEEEEECCCCCEEEECCCCCCCCCCEEEECCCCCCCC T ss_conf 99999847889889764678899302378635876553 No 252 >>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=25.06 E-value=35 Score=15.49 Aligned_cols=18 Identities=6% Similarity=-0.010 Sum_probs=14.0 Q ss_pred CCCCCCCCCCCCEECHHH Q ss_conf 888722778987153233 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~ 40 (129) +..|-.|+.||..|.-.. T Consensus 9 gekpy~C~~Cgk~F~~~~ 26 (46) T 2ep2_A 9 GEKPYECSICGKSFTKKS 26 (46) T ss_dssp CCCSEECSSSCCEESSHH T ss_pred CCCCEECCCCCCEECCHH T ss_conf 988978998898747878 No 253 >>2zkr_z 60S ribosomal protein L37A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1ysh_D (z:1-71) Probab=24.88 E-value=30 Score=15.94 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=17.8 Q ss_pred CCCCCCCCCCEEEECCCCC---CCCCCCCCEEC Q ss_conf 8311788887442148887---22778987153 Q gi|254780459|r 8 TKRTCPDTGKRFYDLNKQV---IVSPYTQNSWP 37 (129) Q Consensus 8 ~KR~C~~Cg~KFYDlnk~P---iiCP~CG~e~~ 37 (129) .|++||.||.. .+.|.- =.|-+||..|. T Consensus 35 a~y~CpfCgk~--~vkR~a~GIW~C~~C~~~~A 65 (71) T 2zkr_z 35 AKYTCSFCGKT--KMKRRAVGIWHCGSCMKTVA 65 (71) T ss_dssp SCBCCSSSCSS--CEEEEETTEEEETTTCCEEE T ss_pred CCCCCCCCCCC--EEEEEEEEEEECCCCCCEEE T ss_conf 78619999997--46888888868889999875 No 254 >>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=24.85 E-value=31 Score=15.84 Aligned_cols=18 Identities=11% Similarity=0.130 Sum_probs=13.8 Q ss_pred CCCCCCCCCCCCEECHHH Q ss_conf 888722778987153233 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~ 40 (129) +..|-.|+.||..|.-.. T Consensus 9 gekpy~C~~C~k~F~~~s 26 (46) T 2ytt_A 9 GEKPYQCSECGKSFSGSY 26 (46) T ss_dssp CCCTTCCSSSCCCCSSHH T ss_pred CCCCEECCCCCCEECCHH T ss_conf 988958898899704458 No 255 >>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=24.81 E-value=36 Score=15.43 Aligned_cols=20 Identities=0% Similarity=-0.162 Sum_probs=14.7 Q ss_pred CCCCCCCCCCCCCEECHHHH Q ss_conf 48887227789871532331 Q gi|254780459|r 22 LNKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 22 lnk~PiiCP~CG~e~~~~~~ 41 (129) .+..|-.|+.||..|.-... T Consensus 8 tgeKpy~C~~Cgk~F~~~s~ 27 (46) T 2yrj_A 8 TGEKPYRCGECGKAFAQKAN 27 (46) T ss_dssp CCCCCEECSSSCCEESSHHH T ss_pred CCCCCEECCCCCCCCCCHHH T ss_conf 79889388998981277888 No 256 >>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=24.70 E-value=35 Score=15.52 Aligned_cols=19 Identities=5% Similarity=-0.080 Sum_probs=14.2 Q ss_pred CCCCCCCCCCCCEECHHHH Q ss_conf 8887227789871532331 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~ 41 (129) ...|-.|+.||..|.-... T Consensus 9 geKpy~C~~Cgk~F~~~s~ 27 (46) T 2eoh_A 9 GKKPYECKECRKTFIQIGH 27 (46) T ss_dssp CSCSCCCSSSCCCCSSHHH T ss_pred CCCCEECCCCCCCCCCHHH T ss_conf 9988078978885665266 No 257 >>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=24.66 E-value=28 Score=16.14 Aligned_cols=19 Identities=0% Similarity=0.046 Sum_probs=14.3 Q ss_pred CCCCCCCCCCCCEECHHHH Q ss_conf 8887227789871532331 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~ 41 (129) +..|-.|+.||..|.-... T Consensus 9 gekpy~C~~Cgk~F~~~~~ 27 (44) T 2eox_A 9 DSKSYNCNECGKAFTRIFH 27 (44) T ss_dssp CCCCEEETTTTEEESSSHH T ss_pred CCCCCCCCCCCCEECCHHH T ss_conf 9858118998884387578 No 258 >>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} (W:1-61) Probab=24.61 E-value=27 Score=16.20 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=18.6 Q ss_pred CCCCCCCCCCCEEEECCCCC---CCCCCCCCEEC Q ss_conf 78311788887442148887---22778987153 Q gi|254780459|r 7 GTKRTCPDTGKRFYDLNKQV---IVSPYTQNSWP 37 (129) Q Consensus 7 G~KR~C~~Cg~KFYDlnk~P---iiCP~CG~e~~ 37 (129) -.|.+||.||+. -+.|.- =.|-+||..|. T Consensus 25 ~~ky~C~fCgk~--~vkR~a~GIW~C~~C~~~~A 56 (61) T 1ffk_W 25 KKKYKCPVCGFP--KLKRASTSIWVCGHCGYKIA 56 (61) T ss_pred CCCCCCCCCCCC--EEEEEEEEEEECCCCCCEEC T ss_conf 157459999985--04777887897478998502 No 259 >>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=24.57 E-value=31 Score=15.85 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=15.5 Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCEE Q ss_conf 3117888874421488872277898715 Q gi|254780459|r 9 KRTCPDTGKRFYDLNKQVIVSPYTQNSW 36 (129) Q Consensus 9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e~ 36 (129) -++|..|+.+..= -.||.|+.-| T Consensus 14 ~~~C~vC~~~~~k-----Y~CP~C~~~y 36 (59) T 1x4s_A 14 CGFCPAGEVQPAR-----YTCPRCNAPY 36 (59) T ss_dssp ECSSCTTCCEEEC-----EECTTTCCEE T ss_pred CCCCCCCCCCCCC-----CCCCCCCCCC T ss_conf 8608154577775-----3187979833 No 260 >>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=24.51 E-value=36 Score=15.41 Aligned_cols=18 Identities=0% Similarity=-0.162 Sum_probs=13.8 Q ss_pred CCCCCCCCCCCCEECHHH Q ss_conf 888722778987153233 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~ 40 (129) ...|-.|+.||..|.-.. T Consensus 9 gekpy~C~~Cgk~F~~~s 26 (46) T 2eoo_A 9 GERPYGCNECGKNFGRHS 26 (46) T ss_dssp CCCCEECSSSCCEESSHH T ss_pred CCCCEECCCCCCCCCCHH T ss_conf 998948998898444388 No 261 >>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} (A:116-234) Probab=24.51 E-value=27 Score=16.23 Aligned_cols=28 Identities=7% Similarity=0.051 Sum_probs=20.2 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCEECH Q ss_conf 1788887442148887227789871532 Q gi|254780459|r 11 TCPDTGKRFYDLNKQVIVSPYTQNSWPL 38 (129) Q Consensus 11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~ 38 (129) -|++||+-.=.....-..|.-||+.+.+ T Consensus 11 ~c~~c~~~l~~~~~~~~~c~r~~~~ve~ 38 (119) T 2d5b_A 11 YCVSCERFYTEKELVEGLCPIHGRPVER 38 (119) T ss_dssp EETTTTEECCTTTSBTTBCTTTCSBCEE T ss_pred CCCCCCCEECCHHHCCCCCCCCCCCEEE T ss_conf 4024530104012012233333331011 No 262 >>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=24.48 E-value=36 Score=15.47 Aligned_cols=19 Identities=11% Similarity=-0.053 Sum_probs=13.6 Q ss_pred CCCCCCCCCCCCEECHHHH Q ss_conf 8887227789871532331 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~ 41 (129) +..|-.|+.||..|.-... T Consensus 7 geKpy~C~~C~k~F~~~~~ 25 (41) T 2ept_A 7 GQRVYECQECGKSFRQKGS 25 (41) T ss_dssp CCCCEECSSSCCEESSHHH T ss_pred CCCCEECCCCCCEECCHHH T ss_conf 9999776999955279889 No 263 >>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} (A:) Probab=24.46 E-value=31 Score=15.86 Aligned_cols=29 Identities=14% Similarity=0.300 Sum_probs=19.1 Q ss_pred CCCCCCCC--CCCEEEECCCCCCCCCCCCCEECHH Q ss_conf 78311788--8874421488872277898715323 Q gi|254780459|r 7 GTKRTCPD--TGKRFYDLNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 7 G~KR~C~~--Cg~KFYDlnk~PiiCP~CG~e~~~~ 39 (129) ...-.|.. |+.+=+ -|++|++|+..|=+. T Consensus 23 ~~~~~Cs~~~C~~~~~----lp~~C~~C~~~FC~~ 53 (86) T 1wfe_A 23 HKSYSCSFKGCTDVEL----VAVICPYCEKNFCLR 53 (86) T ss_dssp SCCEECCSTTCCCEES----SCEECTTTCCEECGG T ss_pred CCCCCCCCCCCCCCCC----CCCCCHHHCCCHHHC T ss_conf 7678678777888655----751540118701053 No 264 >>2vm5_A Baculoviral IAP repeat-containing protein 1; baculoviral inhibitor of apoptosis repeat-containing 1, BIR2, BIRC1, apoptosis, polymorphism; 1.80A {Homo sapiens} (A:) Probab=24.43 E-value=39 Score=15.22 Aligned_cols=19 Identities=5% Similarity=-0.064 Sum_probs=13.4 Q ss_pred EEEECC-CCCCCCCCCCCEE Q ss_conf 442148-8872277898715 Q gi|254780459|r 18 RFYDLN-KQVIVSPYTQNSW 36 (129) Q Consensus 18 KFYDln-k~PiiCP~CG~e~ 36 (129) =||=.+ .+-+.|.+||..+ T Consensus 47 GFyytg~~D~v~C~~C~~~l 66 (106) T 2vm5_A 47 GFVFTGKQDTVQCFSCGGCL 66 (106) T ss_dssp TEEECSSTTCEEETTTCCEE T ss_pred CCEECCCCCEEEEEECCCEE T ss_conf 98688999878970068893 No 265 >>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} (A:) Probab=24.06 E-value=37 Score=15.33 Aligned_cols=20 Identities=0% Similarity=-0.208 Sum_probs=14.6 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +..|-.|+.||..|.-...+ T Consensus 9 gekpy~C~~C~k~F~~~s~L 28 (46) T 2elz_A 9 VEKPYKCEDCGKGYNRRLNL 28 (46) T ss_dssp CCSSCBCSSSCCBCSSHHHH T ss_pred CCCCEECCCCCCCCCCCCCC T ss_conf 91882889789997455554 No 266 >>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=24.05 E-value=37 Score=15.38 Aligned_cols=20 Identities=0% Similarity=-0.044 Sum_probs=14.5 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +..|-.|+.||..|.-...+ T Consensus 9 gekpy~C~~Cgk~F~~~s~L 28 (46) T 2em6_A 9 GEKCYKCDVCGKEFSQSSHL 28 (46) T ss_dssp CCCCCBCSSSCCBCSSHHHH T ss_pred CCCCEECCCCCEEECCHHHH T ss_conf 97996618849570675887 No 267 >>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=23.88 E-value=36 Score=15.45 Aligned_cols=19 Identities=0% Similarity=0.057 Sum_probs=14.0 Q ss_pred CCCCCCCCCCCCEECHHHH Q ss_conf 8887227789871532331 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~ 41 (129) +..|-.|+.||..|.-... T Consensus 9 gekp~~C~~Cgk~F~~~~~ 27 (44) T 2yu5_A 9 GENPFKCSKCDRVFTQRNY 27 (44) T ss_dssp CCCSEECSSSSCEESSSHH T ss_pred CCCCEECCCCCCCCCCHHH T ss_conf 9979717988872057689 No 268 >>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} (A:136-219) Probab=23.88 E-value=30 Score=15.88 Aligned_cols=10 Identities=10% Similarity=0.172 Sum_probs=7.0 Q ss_pred CCCCCCCCEE Q ss_conf 2277898715 Q gi|254780459|r 27 IVSPYTQNSW 36 (129) Q Consensus 27 iiCP~CG~e~ 36 (129) ++||+||... T Consensus 40 piC~~cGkv~ 49 (84) T 1irx_A 40 VYCPEHRREA 49 (84) T ss_dssp EECTTTCCEE T ss_pred CHHCCCCCCC T ss_conf 1110346566 No 269 >>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} (A:182-332) Probab=23.78 E-value=23 Score=16.56 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=17.7 Q ss_pred CEEEECCCC-CCCCCCCCCEE-CHHHH Q ss_conf 744214888-72277898715-32331 Q gi|254780459|r 17 KRFYDLNKQ-VIVSPYTQNSW-PLAYF 41 (129) Q Consensus 17 ~KFYDlnk~-PiiCP~CG~e~-~~~~~ 41 (129) +|||||+-. ||-|=-=|..+ +...+ T Consensus 97 aRFYel~TnrPif~~RDg~~~y~~~ei 123 (151) T 1gxm_A 97 YRFYDLNTNRGFFSDRDGSKFYDITQM 123 (151) T ss_dssp ESEECTTTCCBCEECTTCCEESCGGGS T ss_pred HHHHHHCCCCCEEECCCCEEEEEHHHC T ss_conf 988751159953524787266303322 No 270 >>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=23.64 E-value=42 Score=15.05 Aligned_cols=19 Identities=0% Similarity=-0.158 Sum_probs=14.1 Q ss_pred CCCCCCCCCCCCEECHHHH Q ss_conf 8887227789871532331 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~ 41 (129) +..|-.|+.||..|.-... T Consensus 9 gekpy~C~~Cgk~F~~~s~ 27 (46) T 2em4_A 9 GQRPYECIECGKAFKTKSS 27 (46) T ss_dssp CSSSEECSSSCCEESSHHH T ss_pred CCCCEECCCCCEECCCHHH T ss_conf 9888347986770401577 No 271 >>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=23.61 E-value=39 Score=15.22 Aligned_cols=18 Identities=0% Similarity=0.093 Sum_probs=13.6 Q ss_pred CCCCCCCCCCCCEECHHH Q ss_conf 888722778987153233 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~ 40 (129) ...|-.|+.||..|.-.. T Consensus 9 geKp~~C~~Cgk~F~~~~ 26 (46) T 2eoy_A 9 KEKCFKCNKCEKTFSCSK 26 (46) T ss_dssp CSCCEECSSSCCEESSSH T ss_pred CCCCEECCCCCCCCCCHH T ss_conf 987966898499836467 No 272 >>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=23.57 E-value=40 Score=15.13 Aligned_cols=20 Identities=0% Similarity=-0.125 Sum_probs=14.9 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) ...|-.|..||..|.-...+ T Consensus 9 gekpy~C~~Cgk~F~~~s~L 28 (46) T 2emp_A 9 GVKPYMCNECGKAFSVYSSL 28 (46) T ss_dssp CCCSEECSSSCCEESCHHHH T ss_pred CCCCCCCCCCCCCCCCHHHH T ss_conf 88082889999803408899 No 273 >>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=23.55 E-value=41 Score=15.06 Aligned_cols=20 Identities=0% Similarity=0.001 Sum_probs=14.4 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +..|-.|..||..|.-...+ T Consensus 9 gekpy~C~~Cgk~F~~~s~L 28 (46) T 2ytj_A 9 GEKPYICAECGKAFTIRSNL 28 (46) T ss_dssp SCCSEECSSSCCEESSHHHH T ss_pred CCCCEECCCCCCCCCCCCCH T ss_conf 99881678899425326152 No 274 >>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=23.52 E-value=29 Score=16.01 Aligned_cols=19 Identities=0% Similarity=-0.234 Sum_probs=14.1 Q ss_pred CCCCCCCCCCCCEECHHHH Q ss_conf 8887227789871532331 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~ 41 (129) ...|-.|+.||..|.-..- T Consensus 9 gekpy~C~~C~k~F~~~s~ 27 (44) T 2eoj_A 9 GENPYECCECGKVFSRKDQ 27 (44) T ss_dssp SCCSCEETTTTEECSSHHH T ss_pred CCCCEECCCCCCCCCCHHH T ss_conf 9889778999935265155 No 275 >>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=23.49 E-value=38 Score=15.28 Aligned_cols=20 Identities=0% Similarity=-0.127 Sum_probs=14.5 Q ss_pred CCCCCCCCCCCCCEECHHHH Q ss_conf 48887227789871532331 Q gi|254780459|r 22 LNKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 22 lnk~PiiCP~CG~e~~~~~~ 41 (129) ....|-.|..||..|.-... T Consensus 8 tgekpy~C~~Cgk~F~~~s~ 27 (46) T 2yu8_A 8 TGEKPYKCNECGKVFTQNSH 27 (46) T ss_dssp CCCSSEECSSSCCEESSSHH T ss_pred CCCCCEECCCCCCEECCHHH T ss_conf 89989588998983077889 No 276 >>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} (A:) Probab=23.41 E-value=31 Score=15.81 Aligned_cols=16 Identities=0% Similarity=-0.105 Sum_probs=10.4 Q ss_pred CCCCCCCCCCCCEECH Q ss_conf 8887227789871532 Q gi|254780459|r 23 NKQVIVSPYTQNSWPL 38 (129) Q Consensus 23 nk~PiiCP~CG~e~~~ 38 (129) -..|--|+.||.-|.- T Consensus 10 ~~~~~eC~lC~vKYs~ 25 (55) T 2yrk_A 10 DGTKPECTLCGVKYSA 25 (55) T ss_dssp CCCCSCCTTTTCCCCS T ss_pred CCCCCCCCCCCEEEEE T ss_conf 9995537632514210 No 277 >>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} (A:1-33) Probab=23.34 E-value=31 Score=15.83 Aligned_cols=13 Identities=0% Similarity=-0.223 Sum_probs=8.4 Q ss_pred CCCCCCCEECHHH Q ss_conf 2778987153233 Q gi|254780459|r 28 VSPYTQNSWPLAY 40 (129) Q Consensus 28 iCP~CG~e~~~~~ 40 (129) .|+.||..|.-.. T Consensus 3 ~C~~C~k~F~~~s 15 (33) T 1bbo_A 3 ICEECGIRXKKPS 15 (33) T ss_dssp BCTTTCCBCSSHH T ss_pred CCCCCCCCCCCHH T ss_conf 0697969268399 No 278 >>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=23.30 E-value=40 Score=15.14 Aligned_cols=19 Identities=5% Similarity=-0.038 Sum_probs=14.1 Q ss_pred CCCCCCCCCCCCEECHHHH Q ss_conf 8887227789871532331 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~ 41 (129) +..|-.|+.||..|.-... T Consensus 9 gekp~~C~~Cgk~F~~~~~ 27 (46) T 2ytg_A 9 GEKPFKCGECGKSYNQRVH 27 (46) T ss_dssp SCCSEECTTTCCEESSSHH T ss_pred CCCCEECCCCCCCCCCHHH T ss_conf 9879488999961267889 No 279 >>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=23.21 E-value=39 Score=15.19 Aligned_cols=20 Identities=0% Similarity=-0.089 Sum_probs=14.7 Q ss_pred CCCCCCCCCCCCCEECHHHH Q ss_conf 48887227789871532331 Q gi|254780459|r 22 LNKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 22 lnk~PiiCP~CG~e~~~~~~ 41 (129) .+..|-.|+.||..|.-... T Consensus 8 tgekpy~C~~Cgk~F~~~s~ 27 (46) T 2yth_A 8 SGEKPFQCEECGKRFTQNSH 27 (46) T ss_dssp CCSSSBCCSSSCCCBSSHHH T ss_pred CCCCCEECCCCCCCCCCHHH T ss_conf 89799789999998588889 No 280 >>2hu9_A MERP, mercuric transport protein periplasmic component; copper chaperone, iron-sufur protein, COPZ, ATX1, ATOX1, metal transport; 1.78A {Archaeoglobus fulgidus} (A:1-64) Probab=23.13 E-value=28 Score=16.05 Aligned_cols=10 Identities=10% Similarity=-0.184 Sum_probs=7.3 Q ss_pred CCCCCCCEEC Q ss_conf 2778987153 Q gi|254780459|r 28 VSPYTQNSWP 37 (129) Q Consensus 28 iCP~CG~e~~ 37 (129) .||.||++=. T Consensus 3 ~CP~Cg~~G~ 12 (64) T 2hu9_A 3 RCPECSTEGW 12 (64) T ss_dssp BCTTTCCBCE T ss_pred CCCCCCCCCE T ss_conf 5887887675 No 281 >>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} (B:315-381) Probab=23.11 E-value=54 Score=14.36 Aligned_cols=30 Identities=10% Similarity=0.149 Sum_probs=20.8 Q ss_pred CCCC--CCCCCEEE-----ECCCC-C----------CCCCCCCCEECH Q ss_conf 3117--88887442-----14888-7----------227789871532 Q gi|254780459|r 9 KRTC--PDTGKRFY-----DLNKQ-V----------IVSPYTQNSWPL 38 (129) Q Consensus 9 KR~C--~~Cg~KFY-----Dlnk~-P----------iiCP~CG~e~~~ 38 (129) +++| +.||.+|- .-=|+ | -.||+|...|.. T Consensus 12 ~~~C~n~~C~~~FH~~CL~~Wl~s~~~sr~sf~~~~g~CP~Cr~~is~ 59 (67) T 3k1l_B 12 LVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 59 (67) T ss_dssp CBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG T ss_pred CEECCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCH T ss_conf 534586435872167899999983778764642144238899971224 No 282 >>2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling protein/apoptosis complex; 1.80A {Homo sapiens} PDB: 2pop_B (A:) Probab=23.02 E-value=43 Score=14.95 Aligned_cols=20 Identities=5% Similarity=-0.062 Sum_probs=14.9 Q ss_pred CEEEECC-CCCCCCCCCCCEE Q ss_conf 7442148-8872277898715 Q gi|254780459|r 17 KRFYDLN-KQVIVSPYTQNSW 36 (129) Q Consensus 17 ~KFYDln-k~PiiCP~CG~e~ 36 (129) +=||=.+ .+-+.|.+||.++ T Consensus 45 aGFyytg~~D~v~C~~C~~~l 65 (94) T 2poi_A 45 AGFLYTGEGDTVRCFSCHAAV 65 (94) T ss_dssp TTEEECSSTTCEEETTTCCEE T ss_pred CCCEECCCCCEEEECCCCCCC T ss_conf 690877999878948668893 No 283 >>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:33-68) Probab=22.98 E-value=35 Score=15.47 Aligned_cols=18 Identities=6% Similarity=-0.140 Sum_probs=12.8 Q ss_pred CCCCCCCCCCEECHHHHH Q ss_conf 872277898715323310 Q gi|254780459|r 25 QVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 25 ~PiiCP~CG~e~~~~~~~ 42 (129) .|-.|+.||..|.-...+ T Consensus 2 KPy~C~~Cgk~F~~~s~L 19 (36) T 2yt9_A 2 KPYSCPVCGLRFKRKDRM 19 (36) T ss_dssp CSEECSSSCCEESCHHHH T ss_pred CCCCCCCCCCCCCCCCCC T ss_conf 012233332211101101 No 284 >>1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} (C:) Probab=22.93 E-value=43 Score=14.94 Aligned_cols=18 Identities=0% Similarity=-0.226 Sum_probs=9.8 Q ss_pred EEECCCCCCCCCCCCCEE Q ss_conf 421488872277898715 Q gi|254780459|r 19 FYDLNKQVIVSPYTQNSW 36 (129) Q Consensus 19 FYDlnk~PiiCP~CG~e~ 36 (129) ||--..+-+.|.+||..+ T Consensus 53 yytg~~D~v~Cf~C~~~l 70 (121) T 1g73_C 53 YALGEGDKVKCFHCGGGL 70 (121) T ss_dssp EECSSTTCEEETTTCCEE T ss_pred EEECCCCEEEEEECCCCC T ss_conf 472688737821007744 No 285 >>2zjr_1 50S ribosomal protein L33; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (1:) Probab=22.69 E-value=40 Score=15.13 Aligned_cols=35 Identities=20% Similarity=0.163 Sum_probs=24.3 Q ss_pred CCCHHH--CCCCCCCCCCCEEEECCCCCC----------CCCCCCCE Q ss_conf 975222--783117888874421488872----------27789871 Q gi|254780459|r 1 MAKPEL--GTKRTCPDTGKRFYDLNKQVI----------VSPYTQNS 35 (129) Q Consensus 1 MaK~el--G~KR~C~~Cg~KFYDlnk~Pi----------iCP~CG~e 35 (129) |||..- -.+-.|..||.+||=-.|.+- -||.|+.- T Consensus 1 MAkK~~r~~i~L~ct~c~~~nY~T~KN~~~~~~rLelkKycp~~~kh 47 (55) T 2zjr_1 1 MAKDGPRIIVKMESSAGTGFYYTTTKNRRNTQAKLELKKYDPVAKKH 47 (55) T ss_pred CCCCCCCEEEEEEEECCCCCEEEECCCCCCCCCCEEEECCCCCCCCE T ss_conf 98877817999998288898898727889995205897648788735 No 286 >>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=22.56 E-value=46 Score=14.80 Aligned_cols=21 Identities=5% Similarity=-0.164 Sum_probs=15.0 Q ss_pred CCCCCCCCCCCCCEECHHHHH Q ss_conf 488872277898715323310 Q gi|254780459|r 22 LNKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 22 lnk~PiiCP~CG~e~~~~~~~ 42 (129) .+..|-.|+.||..|.-...+ T Consensus 8 tgekpy~C~~C~k~F~~~s~l 28 (46) T 2emm_A 8 TGERPHKCNECGKSFIQSAHL 28 (46) T ss_dssp SCCCSEECSSSCCEESSHHHH T ss_pred CCCCCEECCCCCCCCCCHHHH T ss_conf 899797889999710548887 No 287 >>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus HB8} (A:170-196,A:393-453,A:513-594) Probab=22.54 E-value=22 Score=16.72 Aligned_cols=13 Identities=8% Similarity=-0.041 Sum_probs=8.9 Q ss_pred CCCCCCCEECHHH Q ss_conf 2778987153233 Q gi|254780459|r 28 VSPYTQNSWPLAY 40 (129) Q Consensus 28 iCP~CG~e~~~~~ 40 (129) =||.|||...-+. T Consensus 11 ~cp~~~~~l~~~e 23 (170) T 1ile_A 11 YCPRCGTPLSSHE 23 (170) T ss_dssp EETTTTEECCHHH T ss_pred CCCCCCCCHHHHH T ss_conf 5423477022223 No 288 >>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=22.47 E-value=36 Score=15.42 Aligned_cols=19 Identities=11% Similarity=0.013 Sum_probs=14.1 Q ss_pred CCCCCCCCCCCCEECHHHH Q ss_conf 8887227789871532331 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~ 41 (129) ...|-.|+.||..|.-... T Consensus 9 gekpy~C~~Cgk~F~~~s~ 27 (46) T 2eq4_A 9 GEKLYNCKECGKSFSRAPC 27 (46) T ss_dssp CCCCCCBTTTTBCCSCHHH T ss_pred CCCCEECCCCCCCCCCHHH T ss_conf 9889288987997563789 No 289 >>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=22.45 E-value=39 Score=15.23 Aligned_cols=20 Identities=5% Similarity=0.031 Sum_probs=14.4 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +..|-.|+.||..|.-...+ T Consensus 9 gekpy~C~~C~k~F~~~s~L 28 (46) T 2en9_A 9 GKKLFKCNECKKTFTQSSSL 28 (46) T ss_dssp SSCCCBCTTTCCBCSSHHHH T ss_pred CCCCCCCCCCCCEECCHHHH T ss_conf 89893989889880626786 No 290 >>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=22.36 E-value=37 Score=15.34 Aligned_cols=19 Identities=5% Similarity=-0.226 Sum_probs=13.9 Q ss_pred CCCCCCCCCCCCEECHHHH Q ss_conf 8887227789871532331 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~ 41 (129) +..|-.|+.||..|.-... T Consensus 9 gekp~~C~~C~k~F~~~s~ 27 (46) T 2eom_A 9 GERGHRCSDCGKFFLQASN 27 (46) T ss_dssp CCSSCCCSSSCCCCSSHHH T ss_pred CCCCEECCCCCCCCCCCCC T ss_conf 9588299999988756645 No 291 >>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} (A:) Probab=22.34 E-value=31 Score=15.85 Aligned_cols=27 Identities=11% Similarity=0.149 Sum_probs=13.3 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCEEC Q ss_conf 178888744214888722778987153 Q gi|254780459|r 11 TCPDTGKRFYDLNKQVIVSPYTQNSWP 37 (129) Q Consensus 11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~ 37 (129) .||-|-..|.+-...+++...||+.|- T Consensus 5 ~C~IC~~~~~~~~~~~~~~~~CgH~fc 31 (65) T 1g25_A 5 GCPRCKTTKYRNPSLKLMVNVCGHTLC 31 (65) T ss_dssp CCSTTTTHHHHCSSCCEEECTTCCCEE T ss_pred CCCCCCCCCCCCCCHHHHHHHCCCHHH T ss_conf 788654223368444245665231788 No 292 >>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} (A:) Probab=22.29 E-value=39 Score=15.24 Aligned_cols=16 Identities=6% Similarity=0.056 Sum_probs=9.9 Q ss_pred CCCCCCCCEECHHHHH Q ss_conf 2277898715323310 Q gi|254780459|r 27 IVSPYTQNSWPLAYFE 42 (129) Q Consensus 27 iiCP~CG~e~~~~~~~ 42 (129) -.|..|+..|.--..+ T Consensus 7 ~~C~~C~k~F~s~QAL 22 (39) T 1njq_A 7 YTCSFCKREFRSAQAL 22 (39) T ss_dssp EECTTTCCEESSHHHH T ss_pred EECCCCCCCCCCCCCC T ss_conf 0879988985788665 No 293 >>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} (A:133-171) Probab=22.22 E-value=31 Score=15.85 Aligned_cols=12 Identities=8% Similarity=0.069 Sum_probs=8.9 Q ss_pred CCCCCCCCCC-EE Q ss_conf 8722778987-15 Q gi|254780459|r 25 QVIVSPYTQN-SW 36 (129) Q Consensus 25 ~PiiCP~CG~-e~ 36 (129) .|-.||.||. +| T Consensus 23 EPslC~ECGGRSF 35 (39) T 1ltl_A 23 EPSLCSECGGRSF 35 (39) T ss_dssp CCSCCTTTCCCCE T ss_pred CCCCCCCCCCCEE T ss_conf 8887877789445 No 294 >>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=22.21 E-value=23 Score=16.61 Aligned_cols=18 Identities=11% Similarity=0.141 Sum_probs=12.5 Q ss_pred CCCCCCCCEECHHHHHCC Q ss_conf 227789871532331012 Q gi|254780459|r 27 IVSPYTQNSWPLAYFEAP 44 (129) Q Consensus 27 iiCP~CG~e~~~~~~~~~ 44 (129) --||.|...|....+.++ T Consensus 10 yscpvceksfsedrliks 27 (37) T 2elo_A 10 YSCPVCEKSFSEDRLIKS 27 (37) T ss_dssp CEETTTTEECSSHHHHHH T ss_pred CCCCCHHHHCCHHHHHHH T ss_conf 558502310126588998 No 295 >>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=22.07 E-value=43 Score=14.95 Aligned_cols=19 Identities=0% Similarity=-0.069 Sum_probs=13.9 Q ss_pred CCCCCCCCCCCCEECHHHH Q ss_conf 8887227789871532331 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~ 41 (129) ...|-.|+.||..|.-... T Consensus 9 gekpy~C~~Cgk~F~~~s~ 27 (46) T 2en3_A 9 GEKPFQCKECGMNFSWSCS 27 (46) T ss_dssp CCCSEECSSSCCEESSSHH T ss_pred CCCCEECCCCCCCCCCHHH T ss_conf 9989589999984566778 No 296 >>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} (A:) Probab=22.02 E-value=38 Score=15.31 Aligned_cols=11 Identities=9% Similarity=0.150 Sum_probs=5.9 Q ss_pred CCCCCCCCCEE Q ss_conf 72277898715 Q gi|254780459|r 26 VIVSPYTQNSW 36 (129) Q Consensus 26 PiiCP~CG~e~ 36 (129) .+-||.||+.+ T Consensus 9 ~v~CP~C~k~~ 19 (68) T 1lv3_A 9 TVNCPTCGKTV 19 (68) T ss_dssp EEECTTTCCEE T ss_pred EEECCCCCCCC T ss_conf 20588999844 No 297 >>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=21.97 E-value=43 Score=14.95 Aligned_cols=20 Identities=5% Similarity=-0.072 Sum_probs=14.3 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) ...|-.|+.||..|.-...+ T Consensus 9 gekpy~C~~Cgk~F~~~~~L 28 (46) T 2ytf_A 9 GEKPFECSECQKAFNTKSNL 28 (46) T ss_dssp CCCSEECSSSCCEESSHHHH T ss_pred CCCCEECCCCCCCCCCHHHH T ss_conf 99797899989997787786 No 298 >>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=21.94 E-value=45 Score=14.86 Aligned_cols=17 Identities=0% Similarity=0.073 Sum_probs=13.3 Q ss_pred CCCCCCCCCCCCEECHH Q ss_conf 88872277898715323 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLA 39 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~ 39 (129) +..|-.|+.||..|.-. T Consensus 7 gekpy~C~~Cgk~F~~~ 23 (44) T 2emx_A 7 GEKPFGCSCCEKAFSSK 23 (44) T ss_dssp SCCCEECSSSSCEESSH T ss_pred CCCCEECCCCCCEECCH T ss_conf 99898789989871652 No 299 >>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} (G:1-45) Probab=21.89 E-value=39 Score=15.24 Aligned_cols=18 Identities=6% Similarity=0.093 Sum_probs=12.5 Q ss_pred CCCCCCCC--CCCCEECHHH Q ss_conf 88872277--8987153233 Q gi|254780459|r 23 NKQVIVSP--YTQNSWPLAY 40 (129) Q Consensus 23 nk~PiiCP--~CG~e~~~~~ 40 (129) +..|-.|| .||..|.-.. T Consensus 16 gekpy~C~~~~Cgk~F~~~~ 35 (45) T 1f2i_G 16 KMRPYACPVESCDRRFSRSD 35 (45) T ss_dssp CCCCEECSSTTBCCEESSHH T ss_pred CCCCCCCCCCCCCCCCCCHH T ss_conf 98697198777889239889 No 300 >>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=21.83 E-value=41 Score=15.05 Aligned_cols=18 Identities=0% Similarity=-0.016 Sum_probs=13.7 Q ss_pred CCCCCCCCCCCCEECHHH Q ss_conf 888722778987153233 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~ 40 (129) ...|-.|+.||..|.-.. T Consensus 7 gekpy~C~~Cgk~F~~~s 24 (42) T 2yte_A 7 GEKPYSCAECKETFSDNN 24 (42) T ss_dssp SCCSCBCTTTCCBCSSHH T ss_pred CCCCEECCCCCCEECCHH T ss_conf 888977899988407858 No 301 >>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=21.81 E-value=39 Score=15.21 Aligned_cols=19 Identities=5% Similarity=-0.151 Sum_probs=14.3 Q ss_pred CCCCCCCCCCCCEECHHHH Q ss_conf 8887227789871532331 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~ 41 (129) +..|-.|+.||..|.-... T Consensus 9 gekpy~C~~C~k~F~~~~~ 27 (46) T 2eoq_A 9 GEKPFKCDICGKSFCGRSR 27 (46) T ss_dssp SSCSCCCSSSCCCCSSHHH T ss_pred CCCCEECCCCCCCCCCHHH T ss_conf 9878219987757444789 No 302 >>2ea9_A JW2626, hypothetical protein YFJZ; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Escherichia coli} (A:) Probab=21.81 E-value=21 Score=16.86 Aligned_cols=15 Identities=20% Similarity=0.337 Sum_probs=11.8 Q ss_pred CCCHHHCCCCCCCCC Q ss_conf 975222783117888 Q gi|254780459|r 1 MAKPELGTKRTCPDT 15 (129) Q Consensus 1 MaK~elG~KR~C~~C 15 (129) |+.++||.||.-.-| T Consensus 1 ~~~~~WGL~~~itP~ 15 (105) T 2ea9_A 1 MSNTTWGLQRDITPR 15 (105) T ss_dssp CCSCHHHHTCCSSSE T ss_pred CCCCCCCCCCCCCCC T ss_conf 976654766775735 No 303 >>3gpu_A DNA glycosylase; DNA glycosylase, DNA repair, damage search, base extrusion; HET: DNA 8OG; 1.62A {Geobacillus stearothermophilus} PDB: 3gpx_A* 3gq3_A* 2f5n_A 2f5o_A 2f5p_A 3gp1_A* 3gq4_A* 3gpy_A* 3gq5_A* 3gpp_A* 2f5q_A* 2f5s_A* 1l1z_A* 1l1t_A* 1l2b_A* 1l2c_A* 1l2d_A* 1r2z_A* 1r2y_A* 3jr5_A* ... (A:133-256) Probab=21.71 E-value=41 Score=15.08 Aligned_cols=23 Identities=9% Similarity=-0.031 Sum_probs=17.7 Q ss_pred CCEEEECCCCCCCCCCCCCEECH Q ss_conf 87442148887227789871532 Q gi|254780459|r 16 GKRFYDLNKQVIVSPYTQNSWPL 38 (129) Q Consensus 16 g~KFYDlnk~PiiCP~CG~e~~~ 38 (129) |..|+-..|.=-.||.||+.+.- T Consensus 86 ~~~~~vy~r~g~~C~~CG~~I~~ 108 (124) T 3gpu_A 86 QHHLYVYGRQGNPCKRCGTPIEK 108 (124) T ss_dssp ---CCSTTCTTSBCTTTCCBCEE T ss_pred CCCEEECCCCCCCCCCCCCEEEE T ss_conf 85179818997977999998999 No 304 >>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=21.61 E-value=45 Score=14.85 Aligned_cols=19 Identities=0% Similarity=-0.031 Sum_probs=14.2 Q ss_pred CCCCCCCCCCCCEECHHHH Q ss_conf 8887227789871532331 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~ 41 (129) +..|-.|+.||..|.-..- T Consensus 9 gekpy~C~~Cgk~F~~~s~ 27 (46) T 2em3_A 9 GEKPYECKVCSKAFTQKAH 27 (46) T ss_dssp SCCSEECSSSCCEESSHHH T ss_pred CCCCEECCCCCCCCCCHHH T ss_conf 9969389998996676788 No 305 >>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} (A:1-40) Probab=21.54 E-value=39 Score=15.24 Aligned_cols=18 Identities=0% Similarity=-0.009 Sum_probs=12.4 Q ss_pred CCCCCCC--CCCCCEECHHH Q ss_conf 8887227--78987153233 Q gi|254780459|r 23 NKQVIVS--PYTQNSWPLAY 40 (129) Q Consensus 23 nk~PiiC--P~CG~e~~~~~ 40 (129) +..|-.| |.||..|.-.. T Consensus 9 gekpy~C~~~~CgK~F~~~s 28 (40) T 1tf6_A 9 VYKRYICSFADCGAAYNKNW 28 (40) T ss_dssp -CCCCBCSSTTTCCBCSSHH T ss_pred CCCCEECCCCCCCCEECCHH T ss_conf 99897897888989829999 No 306 >>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, ATP-binding cassette, cytoplasm; HET: ADP; 3.20A {Geobacillus stearothermophilus 10} (A:715-792) Probab=21.52 E-value=58 Score=14.16 Aligned_cols=31 Identities=6% Similarity=0.046 Sum_probs=20.8 Q ss_pred CCCCCC---CCEEEECCCCC---CCCCCCCC-EECHHH Q ss_conf 117888---87442148887---22778987-153233 Q gi|254780459|r 10 RTCPDT---GKRFYDLNKQV---IVSPYTQN-SWPLAY 40 (129) Q Consensus 10 R~C~~C---g~KFYDlnk~P---iiCP~CG~-e~~~~~ 40 (129) =.||.| |...++|..-+ ++||.|+- -|.++. T Consensus 40 G~C~~C~G~G~i~~~~~f~~~~~~~C~~C~G~Rf~~ev 77 (78) T 2r6f_A 40 GRCEACHGDGIIKIEXHFLPDVYVPCEVCHGKRYNRET 77 (78) T ss_dssp TBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTG T ss_pred CCEECCCCCCEEECCHHHCCCCCCCCHHCCCCCCCHHH T ss_conf 41010137624513412124434333100564200667 No 307 >>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=21.46 E-value=42 Score=15.04 Aligned_cols=18 Identities=0% Similarity=-0.097 Sum_probs=13.9 Q ss_pred CCCCCCCCCCCCEECHHH Q ss_conf 888722778987153233 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~ 40 (129) +..|-.|+.||..|.-.. T Consensus 9 gekpy~C~~Cgk~F~~~s 26 (46) T 2eq1_A 9 GEKPYKCNECGKAFRAHS 26 (46) T ss_dssp CSCCCCCTTTTCCCSSHH T ss_pred CCCCEECCCCCCEECCHH T ss_conf 998968898999808888 No 308 >>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=21.37 E-value=43 Score=14.95 Aligned_cols=17 Identities=0% Similarity=-0.121 Sum_probs=13.2 Q ss_pred CCCCCCCCCCCCEECHH Q ss_conf 88872277898715323 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLA 39 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~ 39 (129) ...|-.|+.||..|.-. T Consensus 9 gekpy~C~~Cgk~F~~~ 25 (46) T 2epz_A 9 GEKPFDCIDCGKAFSDH 25 (46) T ss_dssp CCCSBCCTTTCCCBSSH T ss_pred CCCCEECCCCCCEECCH T ss_conf 99791889989961888 No 309 >>1i7f_A Heat shock protein 33; HSP33, redox sensitive molecular chaperone; 2.70A {Escherichia coli} (A:179-292) Probab=21.11 E-value=23 Score=16.57 Aligned_cols=12 Identities=17% Similarity=0.174 Sum_probs=9.6 Q ss_pred CCCCCCCCCEEC Q ss_conf 722778987153 Q gi|254780459|r 26 VIVSPYTQNSWP 37 (129) Q Consensus 26 PiiCP~CG~e~~ 37 (129) -|+|.+||..|. T Consensus 82 Ev~C~FC~~~Y~ 93 (114) T 1i7f_A 82 DXHCDYCGNHYL 93 (114) T ss_dssp ------------ T ss_pred EEEEECCCCEEE T ss_conf 999147798898 No 310 >>1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D- structure; 3.30A {Thermus aquaticus} (D:1-100,D:249-270) Probab=21.11 E-value=36 Score=15.43 Aligned_cols=28 Identities=7% Similarity=-0.152 Sum_probs=19.5 Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCEECH Q ss_conf 311788887442148887227789871532 Q gi|254780459|r 9 KRTCPDTGKRFYDLNKQVIVSPYTQNSWPL 38 (129) Q Consensus 9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~ 38 (129) ..+|..||.++= ++.-..|-.||.+|-. T Consensus 55 ~~~C~tC~~~~~--~~~~~~c~~CG~~~l~ 82 (122) T 1hqm_D 55 DYECACGKYKRQ--RFEGKVCERCGVEVTR 82 (122) T ss_dssp ----------------CCSCSSSSSSSSCC T ss_pred CCCCCCCCCCCC--CCCCCCCCCCCCEEEE T ss_conf 760526652331--5598388999985005 No 311 >>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} (A:) Probab=21.10 E-value=59 Score=14.12 Aligned_cols=18 Identities=11% Similarity=0.132 Sum_probs=10.3 Q ss_pred CCCCCCCCCCEECHHHHH Q ss_conf 872277898715323310 Q gi|254780459|r 25 QVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 25 ~PiiCP~CG~e~~~~~~~ 42 (129) .++.||.|+..+.+..+. T Consensus 52 ~~~~CP~Cr~~~~~~~l~ 69 (79) T 2egp_A 52 GKSSCPVCGISYSFEHLQ 69 (79) T ss_dssp CCCCCSSSCCCCCSSGGG T ss_pred CCCCCCCCCCCCCHHHCC T ss_conf 767289888987745286 No 312 >>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} (A:39-72) Probab=21.06 E-value=47 Score=14.71 Aligned_cols=18 Identities=0% Similarity=-0.014 Sum_probs=12.6 Q ss_pred CCCCCCCC--CCCCEECHHH Q ss_conf 88872277--8987153233 Q gi|254780459|r 23 NKQVIVSP--YTQNSWPLAY 40 (129) Q Consensus 23 nk~PiiCP--~CG~e~~~~~ 40 (129) +-.|-.|| .||..|.-.. T Consensus 6 gekPy~C~~~~C~k~F~~~~ 25 (34) T 2epa_A 6 GEKPFSCSWKGCERRFARSD 25 (34) T ss_dssp SSCSEECCCTTCCCEESSHH T ss_pred CCCCCCCCCCCCCCEEECHH T ss_conf 12013430158898874899 No 313 >>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* (A:33-63) Probab=20.86 E-value=42 Score=15.03 Aligned_cols=19 Identities=0% Similarity=-0.150 Sum_probs=12.5 Q ss_pred CCCCCCC--CCCCEECHHHHH Q ss_conf 8872277--898715323310 Q gi|254780459|r 24 KQVIVSP--YTQNSWPLAYFE 42 (129) Q Consensus 24 k~PiiCP--~CG~e~~~~~~~ 42 (129) -.|-+|+ .||..|.-..-+ T Consensus 2 ekPy~C~~~~CgK~F~~~~~L 22 (31) T 2jp9_A 2 EKPYQCDFKDCERRFSRSDQL 22 (31) T ss_dssp TCCEECCSTTCCCEESSHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCC T ss_conf 520011111111111122111 No 314 >>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=20.76 E-value=49 Score=14.62 Aligned_cols=18 Identities=6% Similarity=0.106 Sum_probs=13.7 Q ss_pred CCCCCCCCCCCCEECHHH Q ss_conf 888722778987153233 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~ 40 (129) ...|-.|+.||..|.-.. T Consensus 9 gekpy~C~~Cgk~F~~~s 26 (46) T 2emj_A 9 GEKPFECAECGKSFSISS 26 (46) T ss_dssp CCCSEECSSSSCEESSHH T ss_pred CCCCEECCCCCCCCCCHH T ss_conf 967948998898355488 No 315 >>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=20.73 E-value=44 Score=14.92 Aligned_cols=19 Identities=0% Similarity=-0.111 Sum_probs=13.8 Q ss_pred CCCCCCCCCCCCEECHHHH Q ss_conf 8887227789871532331 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~ 41 (129) +..|-.|+.||..|.-... T Consensus 9 gekpy~C~~Cgk~F~~~~~ 27 (46) T 2yti_A 9 GEKPYKCNECGKVFTQNSH 27 (46) T ss_dssp CCCTTCCSSSCCCCSSHHH T ss_pred CCCCEECCCCCCEECCHHH T ss_conf 9989778999983077899 No 316 >>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} (A:) Probab=20.65 E-value=38 Score=15.27 Aligned_cols=33 Identities=3% Similarity=-0.136 Sum_probs=25.5 Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCEECHHHH Q ss_conf 311788887442148887227789871532331 Q gi|254780459|r 9 KRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~ 41 (129) -+.|+=|-.-|-+-...|..|.+|+..|-..=+ T Consensus 6 ~~~C~IC~~~~~~~~~~pc~~~~C~H~fh~~Ci 38 (60) T 1vyx_A 6 VPVCWICNEELGNERFRACGCTGELENVHRSCL 38 (60) T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHH T ss_pred CCCCEECCCCCCCCCEEECCCCCCCCEECHHHH T ss_conf 999950487166553021134897567869998 No 317 >>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=20.64 E-value=48 Score=14.66 Aligned_cols=20 Identities=0% Similarity=-0.016 Sum_probs=14.7 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) ...|-.|..||..|.-...+ T Consensus 9 gekpy~C~~Cgk~F~~~s~l 28 (46) T 2eon_A 9 GEKPYKCQVCGKAFRVSSHL 28 (46) T ss_dssp SCCSCBCSSSCCBCSSHHHH T ss_pred CCCCEECCCCCEECCCCCCC T ss_conf 98881889898263456675 No 318 >>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* (A:1-32) Probab=20.62 E-value=45 Score=14.85 Aligned_cols=19 Identities=5% Similarity=-0.022 Sum_probs=12.6 Q ss_pred CCCCCCCC--CCCCEECHHHH Q ss_conf 88872277--89871532331 Q gi|254780459|r 23 NKQVIVSP--YTQNSWPLAYF 41 (129) Q Consensus 23 nk~PiiCP--~CG~e~~~~~~ 41 (129) +..|-+|+ +||..|.-..- T Consensus 3 gekpf~C~~~gC~K~F~~~~~ 23 (32) T 2jp9_A 3 EKRPFMCAYPGCNKRYFKLSH 23 (32) T ss_dssp SSCCBCCCSTTSCCCBSCHHH T ss_pred CCCCEECCCCCCCCCCCCHHH T ss_conf 888878889997999097576 No 319 >>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=20.62 E-value=38 Score=15.31 Aligned_cols=18 Identities=6% Similarity=-0.047 Sum_probs=13.8 Q ss_pred CCCCCCCCCCCCEECHHH Q ss_conf 888722778987153233 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~ 40 (129) +..|-.|+.||..|.-.. T Consensus 9 gekp~~C~~Cgk~F~~~s 26 (45) T 2epu_A 9 GQKPFECTHCGKSFRAKG 26 (45) T ss_dssp SCCSEEETTTTEEESSHH T ss_pred CCCCEECCCCCCEECCCH T ss_conf 988975599992725736 No 320 >>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=20.56 E-value=50 Score=14.55 Aligned_cols=18 Identities=0% Similarity=-0.140 Sum_probs=13.7 Q ss_pred CCCCCCCCCCCCEECHHH Q ss_conf 888722778987153233 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~ 40 (129) ...|-.|+.||..|.-.. T Consensus 9 gekpy~C~~Cgk~F~~~s 26 (46) T 2ene_A 9 GEKPYKCNECGKVFRHNS 26 (46) T ss_dssp CSSSEECSSSCCEESSHH T ss_pred CCCCEECCCCCCCCCCHH T ss_conf 997968999999978888 No 321 >>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae} (A:1-91) Probab=20.53 E-value=29 Score=15.98 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=13.8 Q ss_pred CCCCCCCCCCEE-EE-CCCCCCCCCCCCC Q ss_conf 831178888744-21-4888722778987 Q gi|254780459|r 8 TKRTCPDTGKRF-YD-LNKQVIVSPYTQN 34 (129) Q Consensus 8 ~KR~C~~Cg~KF-YD-lnk~PiiCP~CG~ 34 (129) .=|.|..|+.-- ++ |. -=.||.||. T Consensus 3 ~lrAC~~C~~I~t~~qF~--~~gCpnC~~ 29 (91) T 2exu_A 3 SERACMLCGIVQTTNEFN--RDGCPNCQG 29 (91) T ss_dssp CEEEETTTCBEEEHHHHH--HHCCTTTHH T ss_pred CCCHHHHCCCCCCHHHHC--CCCCCCCCC T ss_conf 471555199530242531--379999700 No 322 >>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} (A:) Probab=20.51 E-value=25 Score=16.44 Aligned_cols=10 Identities=20% Similarity=0.564 Sum_probs=5.6 Q ss_pred HCCCCCCCCC Q ss_conf 2783117888 Q gi|254780459|r 6 LGTKRTCPDT 15 (129) Q Consensus 6 lG~KR~C~~C 15 (129) .|.+.+|.|| T Consensus 13 YGA~viCASC 22 (111) T 1xg8_A 13 YGADVICASC 22 (111) T ss_dssp EECSSCCGGG T ss_pred ECCCCCCHHH T ss_conf 7445404542 No 323 >>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens} (A:) Probab=20.49 E-value=61 Score=14.03 Aligned_cols=29 Identities=10% Similarity=0.086 Sum_probs=21.2 Q ss_pred CCHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEE Q ss_conf 75222783117888874421488872277898715 Q gi|254780459|r 2 AKPELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSW 36 (129) Q Consensus 2 aK~elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~ 36 (129) ++......+.|..||. .....|+.|+..+ T Consensus 10 ~~~~~~~~~~C~~C~~------~~~~~C~~C~~v~ 38 (64) T 2odd_A 10 LYFQGDSSESCWNCGR------KASETCSGCNTAR 38 (64) T ss_dssp -----CCSSSCTTTSS------CCCEEETTTSCCE T ss_pred EEECCCCCCCCCCCCC------CCCCCCCCCCCEE T ss_conf 1665888976767994------3138489999874 No 324 >>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=20.48 E-value=51 Score=14.48 Aligned_cols=20 Identities=0% Similarity=-0.164 Sum_probs=14.5 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +..|-.|..||..|.-...+ T Consensus 9 gekpy~C~~Cgk~F~~~s~l 28 (46) T 2emf_A 9 GGKHFECTECGKAFTRKSTL 28 (46) T ss_dssp SSCCEECSSSCCEESCHHHH T ss_pred CCCCEECCCCCCCCCCHHHH T ss_conf 99883379867524126788 No 325 >>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} (A:1-29,A:240-365) Probab=20.48 E-value=34 Score=15.58 Aligned_cols=11 Identities=55% Similarity=1.099 Sum_probs=9.1 Q ss_pred CCCEEEECCCC Q ss_conf 88744214888 Q gi|254780459|r 15 TGKRFYDLNKQ 25 (129) Q Consensus 15 Cg~KFYDlnk~ 25 (129) -|+|||-|||- T Consensus 16 ~~~~~~~~~~~ 26 (155) T 2b3y_A 16 PGKKFFNLNKL 26 (155) T ss_dssp TTCEEECGGGG T ss_pred CCCEEECHHHH T ss_conf 87557457883 No 326 >>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=20.34 E-value=47 Score=14.74 Aligned_cols=19 Identities=0% Similarity=0.006 Sum_probs=14.0 Q ss_pred CCCCCCCCCCCCEECHHHH Q ss_conf 8887227789871532331 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~ 41 (129) +..|-.|+.||..|.-... T Consensus 9 gekpy~C~~Cgk~F~~~s~ 27 (46) T 2ytq_A 9 GEKPYGCSECGKAFSSKSY 27 (46) T ss_dssp CCCSCBCSSSCCBCSCHHH T ss_pred CCCCEECCCCCCCCCCHHH T ss_conf 9899788999998388889 No 327 >>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=20.33 E-value=46 Score=14.77 Aligned_cols=18 Identities=6% Similarity=-0.020 Sum_probs=13.5 Q ss_pred CCCCCCCCCCCCEECHHH Q ss_conf 888722778987153233 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~ 40 (129) ...|-.|+.||..|.-.. T Consensus 9 gekpy~C~~C~k~F~~~s 26 (46) T 2eov_A 9 GEKPYKCSDCGKSFTWKS 26 (46) T ss_dssp SCCSCBCSSSCCBCSSHH T ss_pred CCCCEEECCCCEEEEECC T ss_conf 989988289997634446 No 328 >>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=20.29 E-value=38 Score=15.29 Aligned_cols=35 Identities=14% Similarity=0.253 Sum_probs=24.4 Q ss_pred CCCCCCCCCCEEEECCC--CCCCCCCCCCEECHHHHH Q ss_conf 83117888874421488--872277898715323310 Q gi|254780459|r 8 TKRTCPDTGKRFYDLNK--QVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 8 ~KR~C~~Cg~KFYDlnk--~PiiCP~CG~e~~~~~~~ 42 (129) .--.|+-|.-.|.+-.+ .++++..||+.|-..=+. T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fh~~Ci~ 50 (69) T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLR 50 (69) T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHH T ss_pred CCCCCCCCCHHHHCCCCCCCCEEECCCCCEECHHHHH T ss_conf 9989940796562602357775867789823589999 No 329 >>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=20.23 E-value=48 Score=14.69 Aligned_cols=20 Identities=0% Similarity=-0.177 Sum_probs=14.6 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) ...|-.|..||..|.-...+ T Consensus 9 geKp~~C~~C~k~F~~~~~L 28 (46) T 2eow_A 9 GEKPYKCNECGKAFRARSSL 28 (46) T ss_dssp CCCCEECTTSCCEESSHHHH T ss_pred CCCCEECCCCCCCCCCHHHH T ss_conf 99794789989982888998 No 330 >>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=20.17 E-value=53 Score=14.40 Aligned_cols=20 Identities=0% Similarity=-0.202 Sum_probs=14.5 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +..|-.|..||..|.-...+ T Consensus 9 gekpy~C~~Cgk~F~~~s~L 28 (46) T 2ema_A 9 GEKRYKCNECGKVFSRNSQL 28 (46) T ss_dssp TSCCEECSSSCCEESSHHHH T ss_pred CCCCEECCCCCEECCCCCCC T ss_conf 98997638898105333401 No 331 >>3hl5_A Baculoviral IAP repeat-containing protein 4; BIR, apoptosis, small molecule drug discovery, structure-based drug design, cytoplasm, ligase; HET: 9JZ; 1.80A {Homo sapiens} PDB: 1nw9_A 2vsl_A (A:) Probab=20.16 E-value=53 Score=14.38 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=13.0 Q ss_pred EEECC-CCCCCCCCCCCEE Q ss_conf 42148-8872277898715 Q gi|254780459|r 19 FYDLN-KQVIVSPYTQNSW 36 (129) Q Consensus 19 FYDln-k~PiiCP~CG~e~ 36 (129) ||=.+ .+-+.|.+||..+ T Consensus 38 Fyytg~~D~v~C~~C~~~l 56 (95) T 3hl5_A 38 FYALGEGDKVKCFHCGGGL 56 (95) T ss_dssp EEECSSTTCEEETTTCCEE T ss_pred CEECCCCCEEEECCCCCCC T ss_conf 8785999988966258891 No 332 >>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=20.05 E-value=47 Score=14.74 Aligned_cols=20 Identities=0% Similarity=-0.152 Sum_probs=14.5 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +..|-.|+.||..|.-...+ T Consensus 9 gekpy~C~~Cgk~F~~~~~L 28 (46) T 2enf_A 9 GEKPYKCNECGKVFTQNSHL 28 (46) T ss_dssp CCCSCBCSSSCCBCSSHHHH T ss_pred CCCCEECCCCCCCCCCHHHH T ss_conf 99896889989840778887 Done!