Query         gi|254780459|ref|YP_003064872.1| hypothetical protein CLIBASIA_01720 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 129
No_of_seqs    108 out of 275
Neff          6.5 
Searched_HMMs 33803
Date          Wed Jun  1 13:05:21 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780459.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2akl_A PHNA-like protein PA01  94.9   0.013   4E-07   36.4   2.0   31   11-41     29-59  (62)
  2 >1pft_A TFIIB, PFTFIIBN; N-ter  94.3   0.026 7.7E-07   34.6   2.4   34    8-41      4-39  (50)
  3 >3k1f_M Transcription initiati  94.0   0.024 7.1E-07   34.9   1.7   34    4-37     16-53  (57)
  4 >1dl6_A Transcription factor I  93.8   0.044 1.3E-06   33.3   2.7   39    2-40      4-44  (58)
  5 >3dl0_A Adenylate kinase; phos  92.7   0.073 2.2E-06   31.9   2.4   30    7-36      8-40  (45)
  6 >2gmg_A Hypothetical protein P  92.1   0.072 2.1E-06   31.9   1.8   28   10-37     68-95  (105)
  7 >3fb4_A Adenylate kinase; psyc  91.9     0.1 3.1E-06   31.0   2.4   30    7-36     10-42  (47)
  8 >1nnq_A Rubrerythrin; structur  91.7    0.11 3.2E-06   30.8   2.4   27    7-35     71-97  (105)
  9 >2waq_P DNA-directed RNA polym  91.7   0.091 2.7E-06   31.3   2.0   27   10-36      4-33  (48)
 10 >2f9i_B Acetyl-coenzyme A carb  91.6   0.068   2E-06   32.1   1.2   31    7-37     28-60  (61)
 11 >1aky_A Adenylate kinase; ATP:  91.4    0.12 3.6E-06   30.6   2.4   31    6-36      7-40  (62)
 12 >2jz8_A Uncharacterized protei  91.3    0.12 3.6E-06   30.6   2.3   27   18-44     39-66  (87)
 13 >1ak2_A Adenylate kinase isoen  91.1    0.14 4.1E-06   30.2   2.4   31    6-36      9-42  (48)
 14 >1j8f_A SIRT2, sirtuin 2, isof  90.6     0.1   3E-06   31.0   1.4   32    9-40     27-67  (72)
 15 >2rgx_A Adenylate kinase; tran  90.5    0.13 3.8E-06   30.4   1.8   27    6-36      9-35  (58)
 16 >1vd4_A Transcription initiati  90.4    0.21 6.2E-06   29.1   2.8   29   10-38     15-51  (62)
 17 >2ct7_A Ring finger protein 31  90.2    0.21 6.1E-06   29.1   2.6   30    8-37     24-54  (86)
 18 >2bbw_A Adenylate kinase 4, AK  90.0    0.17 4.9E-06   29.7   2.0   31    6-36      8-41  (64)
 19 >2kdx_A HYPA, hydrogenase/urea  89.7    0.23 6.9E-06   28.8   2.6   26    9-35     73-99  (119)
 20 >2jvm_A Uncharacterized protei  89.5    0.18 5.2E-06   29.6   1.8   26   15-40     40-67  (80)
 21 >3a43_A HYPD, hydrogenase nick  89.1    0.22 6.5E-06   29.0   2.1   27    9-35     70-116 (139)
 22 >3flo_B DNA polymerase alpha c  86.7    0.41 1.2E-05   27.3   2.3   35    8-42     21-65  (206)
 23 >2pk7_A Uncharacterized protei  86.5    0.33 9.6E-06   27.9   1.7   30   10-39      9-39  (69)
 24 >2kpi_A Uncharacterized protei  86.2    0.37 1.1E-05   27.6   1.8   34    6-39      7-41  (56)
 25 >2jny_A Uncharacterized BCR; s  86.1    0.53 1.6E-05   26.7   2.6   37    3-39      4-41  (67)
 26 >1yc5_A NAD-dependent deacetyl  86.0    0.39 1.2E-05   27.5   1.9   32    9-40      4-42  (46)
 27 >2jr6_A UPF0434 protein NMA087  85.6    0.41 1.2E-05   27.3   1.8   35    5-39      4-39  (68)
 28 >2js4_A UPF0434 protein BB2007  85.6    0.44 1.3E-05   27.1   2.0   35    5-39      4-39  (70)
 29 >2apo_B Ribosome biogenesis pr  85.0    0.58 1.7E-05   26.4   2.3   23    8-35      5-27  (60)
 30 >2gnr_A Conserved hypothetical  83.9    0.52 1.5E-05   26.7   1.7   23   10-35     48-70  (145)
 31 >1twf_L ABC10-alpha, DNA-direc  83.6    0.95 2.8E-05   25.1   2.9   32    5-36     24-55  (70)
 32 >2hf1_A Tetraacyldisaccharide-  82.4    0.66 1.9E-05   26.1   1.7   30   10-39      9-39  (68)
 33 >1ma3_A SIR2-AF2, transcriptio  82.1    0.64 1.9E-05   26.1   1.6   31    9-39      6-44  (50)
 34 >2aus_D NOP10, ribosome biogen  81.0       1   3E-05   24.9   2.3   22    9-35      5-26  (60)
 35 >3glr_A NAD-dependent deacetyl  80.8    0.62 1.8E-05   26.2   1.1   33    9-41      6-45  (55)
 36 >3f2b_A DNA-directed DNA polym  80.1    0.99 2.9E-05   25.0   2.0   25   10-36      7-41  (54)
 37 >1vfy_A Phosphatidylinositol-3  80.0     1.3   4E-05   24.2   2.7   34    2-36      4-37  (73)
 38 >2zze_A Alanyl-tRNA synthetase  78.7     1.2 3.5E-05   24.5   2.0   30    5-34     12-44  (266)
 39 >3h0g_L DNA-directed RNA polym  78.4     1.8 5.4E-05   23.4   2.9   32    5-36     17-48  (63)
 40 >1h7b_A Anaerobic ribonucleoti  78.0    0.54 1.6E-05   26.6   0.1   27   10-36    491-518 (555)
 41 >2jrr_A Uncharacterized protei  77.7    0.91 2.7E-05   25.2   1.2   23   17-39     29-53  (67)
 42 >1lko_A Rubrerythrin all-iron(  77.7     1.1 3.3E-05   24.7   1.7   27    8-35      6-32  (43)
 43 >2j6a_A Protein TRM112; transl  77.0    0.84 2.5E-05   25.4   0.9   12   27-38    110-121 (141)
 44 >2ztg_A Alanyl-tRNA synthetase  76.1     1.5 4.4E-05   23.9   2.0   29    5-33     15-46  (260)
 45 >2kn9_A Rubredoxin; metallopro  75.7     1.7 5.1E-05   23.5   2.2   28    8-35     26-69  (81)
 46 >1q14_A HST2 protein; histone   75.3     1.6 4.7E-05   23.7   1.9   32    9-40      6-47  (52)
 47 >2k4x_A 30S ribosomal protein   75.3     1.8 5.2E-05   23.4   2.1   29    8-36     17-46  (55)
 48 >2jmo_A Parkin; IBR, E3 ligase  75.2     2.1 6.3E-05   23.0   2.5   29    8-36     24-60  (80)
 49 >2csz_A Synaptotagmin-like pro  74.5     1.6 4.6E-05   23.8   1.7   31    7-37     23-53  (76)
 50 >1twf_B DNA-directed RNA polym  74.2     1.7 5.1E-05   23.5   1.9   26   10-35      7-34  (70)
 51 >2k5r_A Uncharacterized protei  73.8    0.97 2.9E-05   25.0   0.5   32    8-39      7-66  (97)
 52 >2waq_B DNA-directed RNA polym  73.6     2.1 6.3E-05   22.9   2.2   26   10-35      7-33  (76)
 53 >2j01_6 50S ribosomal protein   72.5     2.4 7.2E-05   22.6   2.3   35    1-35      1-46  (54)
 54 >2j01_5 50S ribosomal protein   72.3     2.3 6.9E-05   22.7   2.2   21   10-34     31-51  (60)
 55 >1dx8_A Rubredoxin; zinc-subst  72.0     2.3 6.8E-05   22.7   2.1   28    8-35      6-49  (70)
 56 >1s24_A Rubredoxin 2; electron  71.8       2 5.9E-05   23.1   1.7   28    7-35     33-77  (87)
 57 >3h0g_B DNA-directed RNA polym  71.8     2.2 6.6E-05   22.8   2.0   27    9-35      7-34  (68)
 58 >2hjh_A NAD-dependent histone   71.5    0.77 2.3E-05   25.6  -0.4   32    9-40      6-44  (84)
 59 >1x4u_A Zinc finger, FYVE doma  70.9     3.1 9.3E-05   21.9   2.6   35    2-37      4-41  (84)
 60 >2zjr_Z 50S ribosomal protein   70.6       2   6E-05   23.1   1.6   23    8-34     29-51  (60)
 61 >2qiz_A Ubiquitin conjugation   70.3     1.9 5.6E-05   23.3   1.3   19   21-39      6-24  (75)
 62 >4rxn_A Rubredoxin; electron t  68.8     2.9 8.7E-05   22.1   2.1   27    8-35      2-45  (54)
 63 >3ir9_A Peptide chain release   68.7     2.1 6.2E-05   23.0   1.3   29    9-37      7-43  (50)
 64 >1m2k_A Silent information reg  68.0     3.5  0.0001   21.6   2.3   30   10-39    122-155 (249)
 65 >1yk4_A Rubredoxin, RD; electr  67.1     3.3 9.9E-05   21.7   2.1   26    9-35      2-44  (52)
 66 >1e8j_A Rubredoxin; iron-sulfu  66.7     3.9 0.00012   21.3   2.3   28    8-35      2-45  (52)
 67 >2v3b_B Rubredoxin 2, rubredox  66.4     3.3 9.7E-05   21.8   1.9   27    8-35      2-45  (55)
 68 >2b4y_A NAD-dependent deacetyl  66.0       3 8.8E-05   22.1   1.6   32    9-40      6-63  (68)
 69 >2dkt_A Ring finger and CHY zi  65.9     3.3 9.7E-05   21.8   1.8   14   20-33     92-105 (112)
 70 >1dt9_A ERF1, protein (eukaryo  65.4     2.4   7E-05   22.7   1.0   31    7-37     96-133 (203)
 71 >2yw8_A RUN and FYVE domain-co  64.9     4.3 0.00013   21.1   2.2   29    8-37     18-46  (82)
 72 >2dlk_A Novel protein; ZF-C2H2  64.4       4 0.00012   21.3   2.0   24   13-36     10-44  (45)
 73 >1u5k_A Hypothetical protein;   62.3     5.3 0.00016   20.5   2.3   29   10-38     69-100 (162)
 74 >2vl6_A SSO MCM N-TER, minichr  61.8       4 0.00012   21.3   1.6   26   10-35     31-66  (157)
 75 >3gmt_A Adenylate kinase; ssgc  61.7     4.3 0.00013   21.1   1.8   31    6-36      9-42  (81)
 76 >1z60_A TFIIH basal transcript  61.6     3.1   9E-05   22.0   1.0   31    5-37     11-41  (59)
 77 >2k5c_A Uncharacterized protei  61.4     3.4  0.0001   21.7   1.2   20   22-41     47-66  (95)
 78 >1yui_A GAGA-factor; complex (  61.0     3.3 9.8E-05   21.8   1.1   17   22-38     20-36  (54)
 79 >1wd2_A Ariadne-1 protein homo  61.0     3.7 0.00011   21.5   1.3   27   10-36      7-36  (60)
 80 >6rxn_A Rubredoxin; electron t  60.2     5.4 0.00016   20.5   2.1   27    8-35      2-38  (45)
 81 >1q1a_A HST2 protein; ternary   59.8       5 0.00015   20.7   1.8   34    7-40     30-73  (79)
 82 >2yu4_A E3 SUMO-protein ligase  59.6     4.2 0.00012   21.2   1.4   31    7-41      5-35  (94)
 83 >2f4m_A Peptide N-glycanase; g  59.5     6.4 0.00019   20.0   2.4   44    5-48      3-68  (68)
 84 >3cc2_Z 50S ribosomal protein   59.2     5.1 0.00015   20.6   1.8   29    7-37     58-89  (116)
 85 >2e72_A POGO transposable elem  58.1     3.9 0.00012   21.3   1.1   19   24-42     10-28  (49)
 86 >2yuc_A TNF receptor-associate  57.9     6.7  0.0002   19.9   2.2   33   10-42     17-60  (76)
 87 >1wfk_A Zinc finger, FYVE doma  57.7       7 0.00021   19.8   2.3   28    8-36      8-35  (88)
 88 >1rqg_A Methionyl-tRNA synthet  57.6     7.6 0.00022   19.6   2.5   34    8-46      3-37  (40)
 89 >1dgs_A DNA ligase; AMP comple  57.1       4 0.00012   21.3   1.0   13   25-37     87-99  (111)
 90 >2adr_A ADR1; transcription re  56.1     5.4 0.00016   20.5   1.5   21   23-43      1-21  (34)
 91 >3jyw_9 60S ribosomal protein   55.7     8.2 0.00024   19.4   2.4   29    7-37     24-55  (72)
 92 >3h99_A Methionyl-tRNA synthet  55.6     5.7 0.00017   20.3   1.5   33    9-46      4-37  (41)
 93 >1wgm_A Ubiquitin conjugation   55.2     5.2 0.00015   20.6   1.3   35    5-43     18-52  (98)
 94 >3htk_C E3 SUMO-protein ligase  54.6     5.7 0.00017   20.3   1.4   31    8-42     45-75  (132)
 95 >1z2q_A LM5-1; membrane protei  54.2       8 0.00024   19.4   2.1   33    3-36     12-47  (52)
 96 >2ct2_A Tripartite motif prote  52.1     1.7 5.1E-05   23.5  -1.6   28   17-44     47-74  (88)
 97 >3jwp_A Transcriptional regula  51.0     9.2 0.00027   19.1   2.0   32    9-40      6-47  (52)
 98 >3be4_A Adenylate kinase; mala  50.9     9.5 0.00028   19.0   2.1   11   28-38     14-24  (37)
 99 >3k35_A Mono-ADP-ribosyltransf  50.2     7.5 0.00022   19.6   1.5   31    9-39    138-184 (318)
100 >2epq_A POZ-, at HOOK-, and zi  50.1     7.7 0.00023   19.5   1.5   16   23-38      7-22  (45)
101 >2owo_A DNA ligase; protein/DN  49.4     7.1 0.00021   19.7   1.2   30    6-35     85-118 (160)
102 >2ctu_A Zinc finger protein 48  49.1     3.5  0.0001   21.7  -0.4   31   10-40     19-53  (73)
103 >3cng_A Nudix hydrolase; struc  48.8     9.2 0.00027   19.1   1.7   29    7-35      1-34  (37)
104 >2elp_A Zinc finger protein 40  48.2     9.1 0.00027   19.1   1.6   16   22-37      5-20  (37)
105 >2bay_A PRE-mRNA splicing fact  47.6     8.2 0.00024   19.4   1.3   33    7-43      1-33  (61)
106 >1exk_A DNAJ protein; extended  47.6     7.6 0.00023   19.5   1.2   31    4-34      6-36  (79)
107 >2elr_A Zinc finger protein 40  47.5       8 0.00024   19.4   1.2   14    7-20      7-20  (36)
108 >2jne_A Hypothetical protein Y  47.4     6.4 0.00019   20.0   0.8   29    5-37     43-72  (101)
109 >3gke_A DDMC; rieske cluster,   47.0     8.6 0.00025   19.2   1.3   33    9-41     46-80  (124)
110 >2dlq_A GLI-kruppel family mem  46.7     6.6 0.00019   20.0   0.7   13   24-36      2-14  (30)
111 >1z01_A 2-OXO-1,2-dihydroquino  46.7     9.3 0.00028   19.0   1.5   33    9-41     81-117 (174)
112 >2ct1_A Transcriptional repres  46.6     9.5 0.00028   19.0   1.5   19   23-41     12-30  (41)
113 >3f9v_A Minichromosome mainten  46.5     9.1 0.00027   19.1   1.4   26   10-35     31-66  (176)
114 >2elq_A Zinc finger protein 40  46.4     9.8 0.00029   18.9   1.6   19   23-41      6-24  (36)
115 3h0n_A Protein Of Unknown Func  45.7     7.7 0.00023   19.5   0.9   34    2-35    138-176 (188)
116 >2kfq_A FP1; protein, de novo   45.4     5.7 0.00017   20.3   0.2   11   28-38      4-14  (32)
117 >1jm7_B BARD1, BRCA1-associate  45.2      10  0.0003   18.8   1.5   32    9-44     22-53  (117)
118 >1llm_C Chimera of ZIF23-GCN4;  45.0     9.2 0.00027   19.0   1.3   16   25-40      2-17  (27)
119 >3h0g_I DNA-directed RNA polym  44.6     9.6 0.00028   19.0   1.3   12   23-34     16-27  (60)
120 >1rik_A E6APC1 peptide; E6-bin  44.1      10  0.0003   18.8   1.4   10   28-37      4-13  (29)
121 >1v54_F VI, cytochrome C oxida  43.8      15 0.00043   17.8   2.1   26   14-39     30-56  (62)
122 >3dpu_A RAB family protein; ro  43.7     7.4 0.00022   19.6   0.6   34    9-42    106-148 (161)
123 >1vq8_1 50S ribosomal protein   43.3      15 0.00045   17.7   2.1   23   10-34     18-40  (57)
124 >2ebt_A Krueppel-like factor 5  43.1      11 0.00032   18.6   1.4   19   24-42      2-20  (29)
125 >1twf_I B12.6, DNA-directed RN  42.9      11 0.00032   18.6   1.3   31    8-38     18-59  (69)
126 >2els_A Zinc finger protein 40  42.8      11 0.00034   18.5   1.4   20   23-42      6-25  (36)
127 >2en2_A B-cell lymphoma 6 prot  42.7      12 0.00036   18.3   1.6   17   23-39      8-24  (42)
128 >2vf7_A UVRA2, excinuclease AB  42.6      20 0.00058   17.0   2.6   29   12-40     41-76  (77)
129 >1fv5_A First zinc finger of U  42.6     6.9  0.0002   19.8   0.3   13   26-38      8-20  (36)
130 >2odx_A Cytochrome C oxidase p  42.5      15 0.00043   17.8   2.0   27   14-40     43-70  (80)
131 >2ee8_A Protein ODD-skipped-re  41.2      13 0.00037   18.2   1.5   20   23-42     14-33  (47)
132 >1x4l_A Skeletal muscle LIM-pr  41.2     2.9 8.5E-05   22.1  -1.8   15   22-36     11-25  (31)
133 >2jr7_A DPH3 homolog; DESR1, C  40.7      21 0.00063   16.8   2.6   26   10-36     24-55  (89)
134 >2elt_A Zinc finger protein 40  40.4      14  0.0004   18.0   1.5   19   23-41      6-24  (36)
135 >1mty_D Methane monooxygenase   39.9      15 0.00043   17.8   1.6   15   26-40      1-16  (55)
136 >1p7a_A BF3, BKLF, kruppel-lik  39.7      13 0.00039   18.1   1.4   20   23-42      8-27  (37)
137 >2jsp_A Transcriptional regula  39.7      11 0.00033   18.5   1.0   10   10-19     22-31  (33)
138 >2eod_A TNF receptor-associate  39.6      17  0.0005   17.4   1.9   27   10-36     11-48  (66)
139 >3dqy_A Toluene 1,2-dioxygenas  39.6      16 0.00048   17.5   1.8   31    9-39     28-60  (71)
140 >2eos_A B-cell lymphoma 6 prot  39.3      14  0.0004   18.0   1.4   19   23-41      8-26  (42)
141 >2fiy_A Protein FDHE homolog;   39.1      15 0.00043   17.8   1.5   23   11-36     55-77  (154)
142 >1yop_A KTI11P; zinc finger, m  39.1      11 0.00033   18.5   0.9   26   10-36     24-55  (83)
143 >2i13_A AART; DNA binding, zin  39.0      14 0.00041   17.9   1.4   18   24-41      2-19  (28)
144 >2cot_A Zinc finger protein 43  38.7      15 0.00043   17.8   1.5   20   22-41     14-33  (42)
145 >2elu_A Zinc finger protein 40  38.6     9.7 0.00029   18.9   0.5   19    5-23      5-23  (37)
146 >3lcz_A YCZA, inhibitor of tra  38.4      14 0.00042   17.9   1.4   23    9-35      9-32  (53)
147 >2jp9_A Wilms tumor 1; DNA bin  38.1      13 0.00039   18.1   1.2   17   25-41      2-18  (27)
148 >2i13_A AART; DNA binding, zin  36.9      15 0.00043   17.8   1.3   16   25-40      2-17  (27)
149 >1wjp_A Zinc finger protein 29  36.8      12 0.00035   18.4   0.8   29   11-39     18-56  (67)
150 >2csh_A Zinc finger protein 29  36.7      15 0.00045   17.7   1.3   14   25-38      2-15  (28)
151 >1ryq_A DNA-directed RNA polym  36.7      13 0.00039   18.1   1.0   22    9-35     11-32  (69)
152 >2de6_A Terminal oxygenase com  36.7      18 0.00053   17.3   1.7   32    9-40     66-101 (147)
153 >1a1h_A QGSR zinc finger pepti  36.4      17  0.0005   17.4   1.5   18   24-41      2-19  (32)
154 >2i13_A AART; DNA binding, zin  36.3      17  0.0005   17.4   1.5   31   11-41     23-64  (73)
155 >1wge_A Hypothetical protein 2  36.1      14 0.00041   18.0   1.0   26   10-36     31-62  (83)
156 >2con_A RUH-035 protein, NIN o  36.0      24 0.00071   16.5   2.2   22   11-34     17-38  (79)
157 >2ej4_A Zinc finger protein ZI  35.9      19 0.00057   17.1   1.7   12   26-37     25-36  (95)
158 >3dpt_A ROCO, RAB family prote  35.8      12 0.00034   18.4   0.6   34    9-42    106-148 (161)
159 >2enc_A Zinc finger protein 22  35.4      18 0.00053   17.3   1.5   20   22-41      8-27  (46)
160 >2i13_A AART; DNA binding, zin  35.3      18 0.00053   17.3   1.5   18   24-41      2-19  (33)
161 >2eme_A Zinc finger protein 47  35.2      18 0.00054   17.3   1.5   20   23-42      9-28  (46)
162 >2ba1_A Archaeal exosome RNA b  34.9      14 0.00042   17.9   0.9   11   25-35     10-20  (34)
163 >1a7i_A QCRP2 (LIM1); LIM doma  34.9      14 0.00041   18.0   0.8   21    4-24      2-22  (40)
164 >1x6h_A Transcriptional repres  34.7      19 0.00056   17.1   1.5   19   23-41     12-30  (41)
165 >1s5p_A NAD-dependent deacetyl  34.5      14 0.00042   17.9   0.9   31    9-39    113-147 (235)
166 >2dlq_A GLI-kruppel family mem  34.5      18 0.00053   17.3   1.4   22   23-44      4-25  (31)
167 >2csh_A Zinc finger protein 29  34.3      16 0.00048   17.5   1.1   12   25-36      2-13  (48)
168 >1llm_C Chimera of ZIF23-GCN4;  33.8      19 0.00057   17.1   1.4   19   24-42      2-20  (61)
169 >2emy_A Zinc finger protein 26  33.8      21 0.00063   16.8   1.7   20   23-42      9-28  (46)
170 >2yur_A Retinoblastoma-binding  33.6      21 0.00062   16.9   1.6   28   10-41     16-43  (74)
171 >2zt5_A Glycyl-tRNA synthetase  33.4      16 0.00048   17.5   1.0   15   27-41      8-22  (86)
172 >2eps_A POZ-, at HOOK-, and zi  33.2      22 0.00065   16.7   1.7   13   24-36     10-22  (54)
173 >2qpz_A Naphthalene 1,2-dioxyg  33.1      21 0.00063   16.8   1.6   31    9-39     28-60  (71)
174 >1l1o_C Replication protein A   33.0      23 0.00068   16.6   1.7   35    4-38     38-74  (162)
175 >3jyw_Y 60S ribosomal protein   32.9      28 0.00082   16.1   2.1   25    8-34     14-38  (52)
176 >1ejp_A Syndecan-4; symmetric-  32.8      19 0.00056   17.1   1.3   17   19-35      9-25  (28)
177 >1a1h_A QGSR zinc finger pepti  32.6      20  0.0006   16.9   1.4   18   24-41      2-19  (28)
178 >1f2i_G Fusion of N-terminal 1  32.6      20  0.0006   16.9   1.4   18   24-41      2-19  (28)
179 >1zbd_B Rabphilin-3A; G protei  32.4      16 0.00047   17.6   0.8   25   12-36      1-33  (45)
180 >1x6e_A Zinc finger protein 24  32.2      22 0.00065   16.7   1.5   18   23-40     11-28  (39)
181 >2el4_A Zinc finger protein 26  32.0      25 0.00073   16.4   1.7   20   22-41      8-27  (46)
182 >1va1_A Transcription factor S  31.9      22 0.00064   16.8   1.5   19   23-41      5-25  (37)
183 >2dmd_A Zinc finger protein 64  31.9      18 0.00053   17.3   1.0   20   23-42      5-24  (38)
184 >1rim_A E6APC2 peptide; E6-bin  31.8      18 0.00052   17.3   1.0   12   28-39      4-15  (33)
185 >1ard_A Yeast transcription fa  31.7      17  0.0005   17.4   0.9   11   28-38      4-14  (29)
186 >2rpc_A Zinc finger protein ZI  31.5      25 0.00075   16.4   1.7   10   11-20     27-36  (117)
187 >2ely_A Zinc finger protein 22  31.4      21 0.00062   16.9   1.3   19   23-41      9-27  (46)
188 >1joc_A EEA1, early endosomal   31.0      28 0.00084   16.1   1.9   24   13-37      1-24  (53)
189 >2yww_A Aspartate carbamoyltra  31.0      18 0.00054   17.2   0.9   23   16-38     24-48  (52)
190 >3jq1_A SUSD superfamily prote  30.9     4.8 0.00014   20.8  -2.1   10   16-25      1-10  (41)
191 >2yqq_A Zinc finger HIT domain  30.9      20  0.0006   17.0   1.2   23    8-36     11-33  (56)
192 >1ncs_A Peptide M30F, transcri  30.8      20 0.00058   17.1   1.1   11   28-38     22-32  (47)
193 >2jvx_A NF-kappa-B essential m  30.6      18 0.00053   17.3   0.9   11   27-37      4-14  (28)
194 >2ayj_A 50S ribosomal protein   30.6      39  0.0012   15.2   2.6   25    8-35     18-42  (56)
195 >2em2_A Zinc finger protein 28  30.3      24 0.00072   16.5   1.5   20   22-41      8-27  (46)
196 >2em5_A ZFP-95, zinc finger pr  30.1      25 0.00074   16.4   1.5   20   23-42      9-28  (46)
197 >1p91_A Ribosomal RNA large su  30.1      26 0.00076   16.3   1.6   26   11-37      4-29  (269)
198 >2epc_A Zinc finger protein 32  29.9      26 0.00077   16.3   1.6   18   23-40      8-25  (42)
199 >2emz_A ZFP-95, zinc finger pr  29.5      23 0.00067   16.7   1.2   19   23-41      9-27  (46)
200 >2ytp_A Zinc finger protein 48  29.5      27  0.0008   16.2   1.6   19   23-41      9-27  (46)
201 >2eoz_A Zinc finger protein 47  29.5      20 0.00059   17.0   0.9   20   23-42      9-28  (46)
202 >1ubd_C Protein (YY1 zinc fing  29.5      20  0.0006   16.9   1.0   16   27-42      5-20  (28)
203 >2cot_A Zinc finger protein 43  29.4      26 0.00077   16.3   1.5   18   24-41      2-19  (35)
204 >2djb_A Polycomb group ring fi  29.2      40  0.0012   15.2   2.4   34    5-42     11-44  (72)
205 >2r6f_A Excinuclease ABC subun  29.2      20  0.0006   17.0   0.9   13   26-38    124-136 (147)
206 >2d9h_A Zinc finger protein 69  29.2      22 0.00064   16.8   1.1   10   28-37      7-16  (45)
207 >3i1n_1 50S ribosomal protein   29.1      32 0.00095   15.7   1.9   35    1-35      1-46  (55)
208 >1tf6_A Protein (transcription  29.1      26 0.00076   16.3   1.4   20   23-42      1-22  (36)
209 >2d8s_A Cellular modulator of   28.6      25 0.00075   16.4   1.3   28   11-38     36-70  (80)
210 >1vq8_Z 50S ribosomal protein   28.5      24  0.0007   16.5   1.2   29    7-37     25-56  (83)
211 >2emh_A Zinc finger protein 48  28.4      29 0.00086   16.0   1.6   20   23-42      9-28  (46)
212 >1x4v_A Hypothetical protein L  28.4      22 0.00066   16.7   1.0   15   25-39     26-40  (63)
213 >3ga8_A HTH-type transcription  28.2      21 0.00061   16.9   0.8   33   11-43      4-54  (78)
214 >2em9_A Zinc finger protein 22  28.1      28 0.00083   16.1   1.5   21   22-42      8-28  (46)
215 >2enh_A Zinc finger protein 28  28.1      27  0.0008   16.2   1.4   19   22-40      8-26  (46)
216 >2eou_A Zinc finger protein 47  27.8      25 0.00074   16.4   1.2   20   23-42      9-28  (44)
217 >1qyp_A RNA polymerase II; tra  27.8      17  0.0005   17.5   0.3   28    9-36     15-53  (57)
218 >2ctt_A DNAJ homolog subfamily  27.7      37  0.0011   15.3   2.1   30    5-34     24-53  (104)
219 >2eml_A Zinc finger protein 28  27.6      29 0.00087   16.0   1.5   20   23-42      9-28  (46)
220 >2ytb_A Zinc finger protein 32  27.6      30 0.00089   15.9   1.6   20   23-42      8-27  (42)
221 >2epx_A Zinc finger protein 28  27.5      28 0.00082   16.1   1.4   17   23-39      9-25  (47)
222 >2eof_A Zinc finger protein 26  27.5      29 0.00084   16.0   1.4   21   22-42      8-28  (44)
223 >2en7_A Zinc finger protein 26  27.4      26 0.00078   16.3   1.3   20   23-42      9-28  (44)
224 >2yso_A ZFP-95, zinc finger pr  27.3      29 0.00086   16.0   1.4   19   23-41      9-27  (46)
225 >2ckl_A Polycomb group ring fi  27.3      27 0.00081   16.2   1.3   31    7-41     13-43  (84)
226 >3iuf_A Zinc finger protein UB  27.0      25 0.00074   16.4   1.1   20   24-43      5-24  (48)
227 >2emg_A Zinc finger protein 48  27.0      29 0.00085   16.0   1.4   18   23-40      9-26  (46)
228 >2eop_A Zinc finger protein 26  27.0      30 0.00088   15.9   1.5   20   23-42      9-28  (46)
229 >2ytk_A Zinc finger protein 34  26.8      32 0.00096   15.7   1.6   20   23-42      9-28  (46)
230 >2epv_A Zinc finger protein 26  26.8      31 0.00091   15.9   1.5   19   23-41      9-27  (44)
231 >2el5_A Zinc finger protein 26  26.7      31 0.00092   15.8   1.5   20   23-42      7-26  (42)
232 >2em8_A Zinc finger protein 22  26.7      31 0.00092   15.8   1.5   21   22-42      8-28  (46)
233 >2epw_A Zinc finger protein 26  26.7      32 0.00093   15.8   1.5   19   22-40      8-26  (46)
234 >2en8_A Zinc finger protein 22  26.5      32 0.00096   15.7   1.6   20   23-42      9-28  (46)
235 >1ubd_C Protein (YY1 zinc fing  26.4      31 0.00092   15.8   1.5   19   24-42      2-22  (30)
236 >2ep1_A Zinc finger protein 48  26.2      30 0.00089   15.9   1.4   20   23-42      9-28  (46)
237 >2i13_A AART; DNA binding, zin  25.9      28 0.00084   16.1   1.2   18   24-41      2-19  (29)
238 >1x6h_A Transcriptional repres  25.6      28 0.00084   16.1   1.1   16   25-40      5-20  (45)
239 >2ct1_A Transcriptional repres  25.6      25 0.00075   16.4   0.9   12   27-38      5-16  (36)
240 >1s1i_9 L37A, YL35, 60S riboso  25.5      27 0.00079   16.2   1.0   30    7-38     33-65  (91)
241 >1x6e_A Zinc finger protein 24  25.5      30 0.00088   15.9   1.2   18   25-42      2-19  (33)
242 >2ebt_A Krueppel-like factor 5  25.5      33 0.00099   15.6   1.5   18   23-40     12-31  (41)
243 >1a1h_A QGSR zinc finger pepti  25.5      30 0.00089   15.9   1.3   17   25-41      3-21  (30)
244 >1cl4_A Protein (GAG polyprote  25.4      29 0.00085   16.0   1.2   16   22-37     26-41  (60)
245 >2zkr_2 60S ribosomal protein   25.4      42  0.0012   15.0   2.0   23   10-34     17-39  (97)
246 >2emk_A Zinc finger protein 28  25.4      33 0.00097   15.7   1.4   18   23-40      9-26  (46)
247 >2ytn_A Zinc finger protein 34  25.3      35   0.001   15.5   1.6   21   22-42      8-28  (46)
248 >2emb_A Zinc finger protein 47  25.2      34 0.00099   15.6   1.5   20   23-42      9-28  (44)
249 >2em0_A Zinc finger protein 22  25.1      30 0.00088   15.9   1.2   20   23-42      9-28  (46)
250 >2el6_A Zinc finger protein 26  25.1      35   0.001   15.5   1.5   20   23-42      9-28  (46)
251 >1nkw_1 50S ribosomal protein   25.1      27 0.00079   16.2   0.9   28    7-34     36-73  (82)
252 >2ep2_A Zinc finger protein 48  25.1      35   0.001   15.5   1.5   18   23-40      9-26  (46)
253 >2zkr_z 60S ribosomal protein   24.9      30 0.00088   15.9   1.1   28    8-37     35-65  (71)
254 >2ytt_A Zinc finger protein 47  24.9      31 0.00091   15.8   1.2   18   23-40      9-26  (46)
255 >2yrj_A Zinc finger protein 47  24.8      36  0.0011   15.4   1.6   20   22-41      8-27  (46)
256 >2eoh_A Zinc finger protein 28  24.7      35   0.001   15.5   1.5   19   23-41      9-27  (46)
257 >2eox_A Zinc finger protein 47  24.7      28 0.00082   16.1   0.9   19   23-41      9-27  (44)
258 >1ffk_W Ribosomal protein L37A  24.6      27  0.0008   16.2   0.9   29    7-37     25-56  (61)
259 >1x4s_A Protein FON, zinc fing  24.6      31 0.00091   15.9   1.2   23    9-36     14-36  (59)
260 >2eoo_A ZFP-95, zinc finger pr  24.5      36  0.0011   15.4   1.5   18   23-40      9-26  (46)
261 >2d5b_A Methionyl-tRNA synthet  24.5      27 0.00079   16.2   0.8   28   11-38     11-38  (119)
262 >2ept_A Zinc finger protein 32  24.5      36  0.0011   15.5   1.5   19   23-41      7-25  (41)
263 >1wfe_A Riken cDNA 2310008M20   24.5      31 0.00091   15.9   1.1   29    7-39     23-53  (86)
264 >2vm5_A Baculoviral IAP repeat  24.4      39  0.0012   15.2   1.7   19   18-36     47-66  (106)
265 >2elz_A Zinc finger protein 22  24.1      37  0.0011   15.3   1.5   20   23-42      9-28  (46)
266 >2em6_A Zinc finger protein 22  24.0      37  0.0011   15.4   1.5   20   23-42      9-28  (46)
267 >2yu5_A Zinc finger protein 47  23.9      36  0.0011   15.5   1.4   19   23-41      9-27  (44)
268 >1irx_A Lysyl-tRNA synthetase;  23.9      30  0.0009   15.9   1.0   10   27-36     40-49  (84)
269 >1gxm_A Pectate lyase; mechani  23.8      23 0.00069   16.6   0.4   25   17-41     97-123 (151)
270 >2em4_A Zinc finger protein 28  23.6      42  0.0012   15.0   1.7   19   23-41      9-27  (46)
271 >2eoy_A Zinc finger protein 47  23.6      39  0.0012   15.2   1.5   18   23-40      9-26  (46)
272 >2emp_A Zinc finger protein 34  23.6      40  0.0012   15.1   1.6   20   23-42      9-28  (46)
273 >2ytj_A Zinc finger protein 48  23.6      41  0.0012   15.1   1.7   20   23-42      9-28  (46)
274 >2eoj_A Zinc finger protein 26  23.5      29 0.00086   16.0   0.9   19   23-41      9-27  (44)
275 >2yu8_A Zinc finger protein 34  23.5      38  0.0011   15.3   1.5   20   22-41      8-27  (46)
276 >2yrk_A Zinc finger homeobox p  23.4      31 0.00092   15.8   1.0   16   23-38     10-25  (55)
277 >1bbo_A Human enhancer-binding  23.3      31 0.00092   15.8   1.0   13   28-40      3-15  (33)
278 >2ytg_A ZFP-95, zinc finger pr  23.3      40  0.0012   15.1   1.6   19   23-41      9-27  (46)
279 >2yth_A Zinc finger protein 22  23.2      39  0.0012   15.2   1.5   20   22-41      8-27  (46)
280 >2hu9_A MERP, mercuric transpo  23.1      28 0.00084   16.1   0.8   10   28-37      3-12  (64)
281 >3k1l_B Fancl; UBC, ring, RWD,  23.1      54  0.0016   14.4   2.6   30    9-38     12-59  (67)
282 >2poi_A Baculoviral IAP repeat  23.0      43  0.0013   15.0   1.7   20   17-36     45-65  (94)
283 >2yt9_A Zinc finger-containing  23.0      35   0.001   15.5   1.2   18   25-42      2-19  (36)
284 >1g73_C Inhibitors of apoptosi  22.9      43  0.0013   14.9   1.7   18   19-36     53-70  (121)
285 >2zjr_1 50S ribosomal protein   22.7      40  0.0012   15.1   1.5   35    1-35      1-47  (55)
286 >2emm_A ZFP-95, zinc finger pr  22.6      46  0.0013   14.8   1.7   21   22-42      8-28  (46)
287 >1ile_A Ilers, isoleucyl-tRNA   22.5      22 0.00065   16.7   0.1   13   28-40     11-23  (170)
288 >2eq4_A Zinc finger protein 22  22.5      36  0.0011   15.4   1.2   19   23-41      9-27  (46)
289 >2en9_A Zinc finger protein 28  22.4      39  0.0011   15.2   1.3   20   23-42      9-28  (46)
290 >2eom_A ZFP-95, zinc finger pr  22.4      37  0.0011   15.3   1.2   19   23-41      9-27  (46)
291 >1g25_A CDK-activating kinase   22.3      31 0.00091   15.9   0.8   27   11-37      5-31  (65)
292 >1njq_A Superman protein; zinc  22.3      39  0.0011   15.2   1.3   16   27-42      7-22  (39)
293 >1ltl_A DNA replication initia  22.2      31 0.00091   15.8   0.8   12   25-36     23-35  (39)
294 >2elo_A Zinc finger protein 40  22.2      23 0.00068   16.6   0.2   18   27-44     10-27  (37)
295 >2en3_A ZFP-95, zinc finger pr  22.1      43  0.0013   15.0   1.5   19   23-41      9-27  (46)
296 >1lv3_A Hypothetical protein Y  22.0      38  0.0011   15.3   1.2   11   26-36      9-19  (68)
297 >2ytf_A Zinc finger protein 26  22.0      43  0.0013   15.0   1.5   20   23-42      9-28  (46)
298 >2emx_A Zinc finger protein 26  21.9      45  0.0013   14.9   1.6   17   23-39      7-23  (44)
299 >1f2i_G Fusion of N-terminal 1  21.9      39  0.0011   15.2   1.2   18   23-40     16-35  (45)
300 >2yte_A Zinc finger protein 47  21.8      41  0.0012   15.1   1.4   18   23-40      7-24  (42)
301 >2eoq_A Zinc finger protein 22  21.8      39  0.0012   15.2   1.3   19   23-41      9-27  (46)
302 >2ea9_A JW2626, hypothetical p  21.8      21 0.00062   16.9  -0.1   15    1-15      1-15  (105)
303 >3gpu_A DNA glycosylase; DNA g  21.7      41  0.0012   15.1   1.4   23   16-38     86-108 (124)
304 >2em3_A Zinc finger protein 28  21.6      45  0.0013   14.9   1.5   19   23-41      9-27  (46)
305 >1tf6_A Protein (transcription  21.5      39  0.0011   15.2   1.2   18   23-40      9-28  (40)
306 >2r6f_A Excinuclease ABC subun  21.5      58  0.0017   14.2   2.8   31   10-40     40-77  (78)
307 >2eq1_A Zinc finger protein 34  21.5      42  0.0012   15.0   1.3   18   23-40      9-26  (46)
308 >2epz_A Zinc finger protein 28  21.4      43  0.0013   15.0   1.4   17   23-39      9-25  (46)
309 >1i7f_A Heat shock protein 33;  21.1      23 0.00069   16.6   0.0   12   26-37     82-93  (114)
310 >1hqm_D DNA-directed RNA polym  21.1      36  0.0011   15.4   1.0   28    9-38     55-82  (122)
311 >2egp_A Tripartite motif-conta  21.1      59  0.0017   14.1   2.0   18   25-42     52-69  (79)
312 >2epa_A Krueppel-like factor 1  21.1      47  0.0014   14.7   1.6   18   23-40      6-25  (34)
313 >2jp9_A Wilms tumor 1; DNA bin  20.9      42  0.0012   15.0   1.2   19   24-42      2-22  (31)
314 >2emj_A Zinc finger protein 28  20.8      49  0.0014   14.6   1.6   18   23-40      9-26  (46)
315 >2yti_A Zinc finger protein 34  20.7      44  0.0013   14.9   1.3   19   23-41      9-27  (46)
316 >1vyx_A ORF K3, K3RING; zinc-b  20.7      38  0.0011   15.3   1.0   33    9-41      6-38  (60)
317 >2eon_A ZFP-95, zinc finger pr  20.6      48  0.0014   14.7   1.5   20   23-42      9-28  (46)
318 >2jp9_A Wilms tumor 1; DNA bin  20.6      45  0.0013   14.9   1.4   19   23-41      3-23  (32)
319 >2epu_A Zinc finger protein 32  20.6      38  0.0011   15.3   1.0   18   23-40      9-26  (45)
320 >2ene_A Zinc finger protein 34  20.6      50  0.0015   14.6   1.6   18   23-40      9-26  (46)
321 >2exu_A Transcription initiati  20.5      29 0.00086   16.0   0.4   25    8-34      3-29  (91)
322 >1xg8_A Hypothetical protein S  20.5      25 0.00073   16.4   0.0   10    6-15     13-22  (111)
323 >2odd_A Protein CBFA2T1; MYND   20.5      61  0.0018   14.0   2.1   29    2-36     10-38  (64)
324 >2emf_A Zinc finger protein 48  20.5      51  0.0015   14.5   1.6   20   23-42      9-28  (46)
325 >2b3y_A Iron-responsive elemen  20.5      34   0.001   15.6   0.7   11   15-25     16-26  (155)
326 >2ytq_A Zinc finger protein 26  20.3      47  0.0014   14.7   1.4   19   23-41      9-27  (46)
327 >2eov_A Zinc finger protein 48  20.3      46  0.0014   14.8   1.4   18   23-40      9-26  (46)
328 >2ea6_A Ring finger protein 4;  20.3      38  0.0011   15.3   0.9   35    8-42     14-50  (69)
329 >2eow_A Zinc finger protein 34  20.2      48  0.0014   14.7   1.4   20   23-42      9-28  (46)
330 >2ema_A Zinc finger protein 34  20.2      53  0.0016   14.4   1.6   20   23-42      9-28  (46)
331 >3hl5_A Baculoviral IAP repeat  20.2      53  0.0016   14.4   1.7   18   19-36     38-56  (95)
332 >2enf_A Zinc finger protein 34  20.0      47  0.0014   14.7   1.3   20   23-42      9-28  (46)

No 1  
>>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} (A:1-62)
Probab=94.85  E-value=0.013  Score=36.42  Aligned_cols=31  Identities=16%  Similarity=0.428  Sum_probs=27.4

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCEECHHHH
Q ss_conf             1788887442148887227789871532331
Q gi|254780459|r   11 TCPDTGKRFYDLNKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~   41 (129)
                      .||.|+.-|-=--..-.|||.||.||.+...
T Consensus        29 ~CPkC~SeYTYeDg~l~VCPECghEW~~~~~   59 (62)
T 2akl_A           29 PCPQCNSEYTYEDGALLVCPECAHEWSPNEA   59 (62)
T ss_dssp             CCTTTCCCCCEECSSSEEETTTTEEECTTTT
T ss_pred             CCCCCCCCCEECCCCEEECCCCCCCCCCCCC
T ss_conf             8988899132837998899876374785535


No 2  
>>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} (A:)
Probab=94.29  E-value=0.026  Score=34.65  Aligned_cols=34  Identities=18%  Similarity=0.295  Sum_probs=28.6

Q ss_pred             CCCCCCCCCCE--EEECCCCCCCCCCCCCEECHHHH
Q ss_conf             83117888874--42148887227789871532331
Q gi|254780459|r    8 TKRTCPDTGKR--FYDLNKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus         8 ~KR~C~~Cg~K--FYDlnk~PiiCP~CG~e~~~~~~   41 (129)
                      .+++||.||..  -||.++--+||..||..+.-..+
T Consensus         4 ~~~~Cp~Cg~~~iv~D~~~Ge~vC~~CG~Vlee~~i   39 (50)
T 1pft_A            4 KQKVCPACESAELIYDPERGEIVCAKCGYVIEENII   39 (50)
T ss_dssp             SCCSCTTTSCCCEEEETTTTEEEESSSCCBCCCCCC
T ss_pred             CCCCCCCCCCCCEEEECCCCEEECCCCCCEECCCCC
T ss_conf             655592987982788788791851269859243424


No 3  
>>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} (M:1-57)
Probab=93.97  E-value=0.024  Score=34.89  Aligned_cols=34  Identities=18%  Similarity=0.251  Sum_probs=28.1

Q ss_pred             HHHCCCCCCCCCCC----EEEECCCCCCCCCCCCCEEC
Q ss_conf             22278311788887----44214888722778987153
Q gi|254780459|r    4 PELGTKRTCPDTGK----RFYDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus         4 ~elG~KR~C~~Cg~----KFYDlnk~PiiCP~CG~e~~   37 (129)
                      .++-.+++||.||.    -.+|+.+--+||-.||-.+.
T Consensus        16 ~~~~~~~~CPeC~s~~~~lv~D~~~Ge~VC~~CGlVi~   53 (57)
T 3k1f_M           16 PNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLS   53 (57)
T ss_dssp             SCCCCCCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCC
T ss_pred             CCCEEEEECCCCCCCCCEEEEECCCCCEECCCCCEEEC
T ss_conf             99864468989999898898879889679735891944


No 4  
>>1dl6_A Transcription factor II B (TFIIB); zinc ribbon; NMR {Homo sapiens} (A:)
Probab=93.76  E-value=0.044  Score=33.28  Aligned_cols=39  Identities=13%  Similarity=0.126  Sum_probs=31.8

Q ss_pred             CCHHHCCCCCCCCCCCE--EEECCCCCCCCCCCCCEECHHH
Q ss_conf             75222783117888874--4214888722778987153233
Q gi|254780459|r    2 AKPELGTKRTCPDTGKR--FYDLNKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus         2 aK~elG~KR~C~~Cg~K--FYDlnk~PiiCP~CG~e~~~~~   40 (129)
                      .+...-.++.||.||..  -||..+--+||-.||..+.-..
T Consensus         4 ~~~~~~~~~~Cp~Cg~~~iv~D~~~Ge~vC~~CG~Vlee~~   44 (58)
T 1dl6_A            4 SRLDALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRV   44 (58)
T ss_dssp             CSCCCCSCCSBTTBSSSCCEECSSSCCEECTTTCCEECCSC
T ss_pred             CCCCCCCCCCCCCCCCCCEEEECCCCEEECCCCCCEECCCC
T ss_conf             43335575599699798777887888185202998933313


No 5  
>>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, cytoplasm, metal-binding, nucleotide biosynthesis, nucleotide-binding; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* (A:118-162)
Probab=92.66  E-value=0.073  Score=31.92  Aligned_cols=30  Identities=10%  Similarity=0.122  Sum_probs=23.3

Q ss_pred             CCCCCCCCCCCEEEECCCC---CCCCCCCCCEE
Q ss_conf             7831178888744214888---72277898715
Q gi|254780459|r    7 GTKRTCPDTGKRFYDLNKQ---VIVSPYTQNSW   36 (129)
Q Consensus         7 G~KR~C~~Cg~KFYDlnk~---PiiCP~CG~e~   36 (129)
                      ---|+|++||+-|--..+.   +-+|..||.++
T Consensus         8 sgRr~C~~CG~~Yh~~~~pP~~~g~CD~cg~~L   40 (45)
T 3dl0_A            8 TGRRICSVCGTTYHLVFNPPKTPGICDKDGGEL   40 (45)
T ss_dssp             HTEEEETTTCCEEETTTBCCSSTTBCTTTCCBE
T ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             677401567861012468844457540234443


No 6  
>>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structural genomics, PSI; NMR {Pyrococcus furiosus dsm 3638} (A:)
Probab=92.07  E-value=0.072  Score=31.94  Aligned_cols=28  Identities=18%  Similarity=0.274  Sum_probs=25.5

Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCEEC
Q ss_conf             1178888744214888722778987153
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~   37 (129)
                      =.|-+||--|-|.-|.|=-||.|..+|.
T Consensus        68 p~C~~CGf~F~d~~~kPsRCP~CkSe~I   95 (105)
T 2gmg_A           68 AQCRKCGFVFKAEINIPSRCPKCKSEWI   95 (105)
T ss_dssp             CBBTTTCCBCCCCSSCCSSCSSSCCCCB
T ss_pred             HHHCCCCCEECCCCCCCCCCCCCCCCCC
T ss_conf             3122077772677899998999887263


No 7  
>>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} (A:116-162)
Probab=91.86  E-value=0.1  Score=30.96  Aligned_cols=30  Identities=7%  Similarity=0.095  Sum_probs=22.8

Q ss_pred             CCCCCCCCCCCEEEECC---CCCCCCCCCCCEE
Q ss_conf             78311788887442148---8872277898715
Q gi|254780459|r    7 GTKRTCPDTGKRFYDLN---KQVIVSPYTQNSW   36 (129)
Q Consensus         7 G~KR~C~~Cg~KFYDln---k~PiiCP~CG~e~   36 (129)
                      ---|+|++||+-|--..   |.+-+|..||...
T Consensus        10 sgRr~C~~cg~~Yn~~~~pPk~~~~CD~cg~~L   42 (47)
T 3fb4_A           10 TGRWICKTCGATYHTIFNPPAVEGICDKDGGEL   42 (47)
T ss_dssp             HSEEEETTTCCEEETTTBCCSSTTBCTTTCCBE
T ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             334301577885534579997667543446512


No 8  
>>1nnq_A Rubrerythrin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.35A {Pyrococcus furiosus} (A:67-171)
Probab=91.73  E-value=0.11  Score=30.85  Aligned_cols=27  Identities=15%  Similarity=0.203  Sum_probs=22.1

Q ss_pred             CCCCCCCCCCCEEEECCCCCCCCCCCCCE
Q ss_conf             78311788887442148887227789871
Q gi|254780459|r    7 GTKRTCPDTGKRFYDLNKQVIVSPYTQNS   35 (129)
Q Consensus         7 G~KR~C~~Cg~KFYDlnk~PiiCP~CG~e   35 (129)
                      +++-+|+.||--|  .+.-|-+||-||+-
T Consensus        71 ~~~~~C~vCGyi~--~ge~P~~CPvC~~~   97 (105)
T 1nnq_A           71 KKVYICPICGYTA--VDEAPEYCPVCGAP   97 (105)
T ss_dssp             SCEEECTTTCCEE--ESCCCSBCTTTCCB
T ss_pred             CCEEECCCCCCCC--CCCCCCCCCCCCCC
T ss_conf             7834899893928--99999979899896


No 9  
>>2waq_P DNA-directed RNA polymerase RPO12 subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 3hkz_P (P:)
Probab=91.67  E-value=0.091  Score=31.32  Aligned_cols=27  Identities=22%  Similarity=0.277  Sum_probs=22.2

Q ss_pred             CCCCCCCCEE--EECCCC-CCCCCCCCCEE
Q ss_conf             1178888744--214888-72277898715
Q gi|254780459|r   10 RTCPDTGKRF--YDLNKQ-VIVSPYTQNSW   36 (129)
Q Consensus        10 R~C~~Cg~KF--YDlnk~-PiiCP~CG~e~   36 (129)
                      -.|..||+.|  -+|.+. -|-||+||.-+
T Consensus         4 Y~C~rCg~~~s~~el~~lp~irCPyCG~kI   33 (48)
T 2waq_P            4 YRCGKCWKTFTDEQLKVLPGVRCPYCGYKI   33 (48)
T ss_dssp             --CCCCSSSCCCCCSCCCSSSSCTTTCCCC
T ss_pred             EEECCCCCCCCHHHHHHCCCCCCCCCCCEE
T ss_conf             884025778068788457886446357289


No 10 
>>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} (B:1-61)
Probab=91.58  E-value=0.068  Score=32.11  Aligned_cols=31  Identities=23%  Similarity=0.412  Sum_probs=26.0

Q ss_pred             CCCCCCCCCCCEEE--ECCCCCCCCCCCCCEEC
Q ss_conf             78311788887442--14888722778987153
Q gi|254780459|r    7 GTKRTCPDTGKRFY--DLNKQVIVSPYTQNSWP   37 (129)
Q Consensus         7 G~KR~C~~Cg~KFY--Dlnk~PiiCP~CG~e~~   37 (129)
                      |.=..||+||.-.|  +|.+.=-|||+||.-|.
T Consensus        28 gLW~KCp~C~~~~~~k~l~~n~~VCp~Cg~Hfr   60 (61)
T 2f9i_B           28 GIMTKCPKCKKIMYTKELAENLNVCFNCDHHIA   60 (61)
T ss_dssp             SSEEECTTTCCEEEHHHHHHTTTBCTTTCCBCC
T ss_pred             CCEEECCCCCCEEEHHHHHHHCCCCCCCCCCCC
T ss_conf             865358898740249999984887849989770


No 11 
>>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase; HET: AP5; 1.63A {Saccharomyces cerevisiae} (A:123-184)
Probab=91.41  E-value=0.12  Score=30.57  Aligned_cols=31  Identities=10%  Similarity=0.219  Sum_probs=25.1

Q ss_pred             HCCCCCCCCCCCEEEECCCC---CCCCCCCCCEE
Q ss_conf             27831178888744214888---72277898715
Q gi|254780459|r    6 LGTKRTCPDTGKRFYDLNKQ---VIVSPYTQNSW   36 (129)
Q Consensus         6 lG~KR~C~~Cg~KFYDlnk~---PiiCP~CG~e~   36 (129)
                      +.-.|+||.||.-|.-+...   +-+|+.||..+
T Consensus         7 l~gRr~c~~cG~~yn~~~~pp~~~~~cd~cg~~L   40 (62)
T 1aky_A            7 ITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEAL   40 (62)
T ss_dssp             HHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBC
T ss_pred             HCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf             1133122477875333458986553332112321


No 12 
>>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str} (A:)
Probab=91.29  E-value=0.12  Score=30.58  Aligned_cols=27  Identities=15%  Similarity=0.209  Sum_probs=20.2

Q ss_pred             EEEECCCC-CCCCCCCCCEECHHHHHCC
Q ss_conf             44214888-7227789871532331012
Q gi|254780459|r   18 RFYDLNKQ-VIVSPYTQNSWPLAYFEAP   44 (129)
Q Consensus        18 KFYDlnk~-PiiCP~CG~e~~~~~~~~~   44 (129)
                      -|-||+.+ .+|||||.|-|.-...++.
T Consensus        39 vFlDMG~d~E~iCpYCSTLYry~~~L~~   66 (87)
T 2jz8_A           39 IFIDMGSTDEKICPYCSTLYRYDPSLSY   66 (87)
T ss_dssp             CEEECTTCCEECCTTTCCEEECCTTSCT
T ss_pred             EEEECCCCCEEECCCCCCEEEECCCCCC
T ss_conf             9897599997988899988784777776


No 13 
>>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} (A:132-179)
Probab=91.06  E-value=0.14  Score=30.22  Aligned_cols=31  Identities=16%  Similarity=0.324  Sum_probs=23.1

Q ss_pred             HCCCCCCCCCCCEEEEC-C--CCCCCCCCCCCEE
Q ss_conf             27831178888744214-8--8872277898715
Q gi|254780459|r    6 LGTKRTCPDTGKRFYDL-N--KQVIVSPYTQNSW   36 (129)
Q Consensus         6 lG~KR~C~~Cg~KFYDl-n--k~PiiCP~CG~e~   36 (129)
                      |.--|+|++||.-|--+ |  |.+=+|..||..+
T Consensus         9 lsgRr~C~~cg~~Yn~~~~ppk~~g~Cd~cg~~L   42 (48)
T 1ak2_A            9 ITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPL   42 (48)
T ss_dssp             HHTCEECTTTCCEEBTTTBCCSSTTBCTTTCCBC
T ss_pred             HHCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             5055121368971233457732345542024343


No 14 
>>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing; gene regulation, transferase; 1.70A {Homo sapiens} (A:1-21,A:154-204)
Probab=90.64  E-value=0.1  Score=31.00  Aligned_cols=32  Identities=16%  Similarity=0.120  Sum_probs=24.4

Q ss_pred             CCCCCCCCCEE-EEC--------CCCCCCCCCCCCEECHHH
Q ss_conf             31178888744-214--------888722778987153233
Q gi|254780459|r    9 KRTCPDTGKRF-YDL--------NKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus         9 KR~C~~Cg~KF-YDl--------nk~PiiCP~CG~e~~~~~   40 (129)
                      +-.|.+||++| |+.        ...|..||.||..+-|..
T Consensus        27 ~~~C~~Cg~~~~~~~~~~~~~i~~~~~P~Cp~CGGilRPdV   67 (72)
T 1j8f_A           27 TSHCVSASCRHEYPLSWMKEKIFSEVTPKCEDCQSLVKPDI   67 (72)
T ss_dssp             EEEESCTTTCCEECHHHHHHHHHTTCCCBCTTTCCBEEEEE
T ss_pred             EEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCE
T ss_conf             24775789986555166665540467888876798458878


No 15 
>>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding, cytoplasm, nucleotide-binding; HET: AP5; 1.90A {Aquifex aeolicus} PDB: 2rh5_A (A:113-170)
Probab=90.54  E-value=0.13  Score=30.44  Aligned_cols=27  Identities=22%  Similarity=0.255  Sum_probs=22.1

Q ss_pred             HCCCCCCCCCCCEEEECCCCCCCCCCCCCEE
Q ss_conf             2783117888874421488872277898715
Q gi|254780459|r    6 LGTKRTCPDTGKRFYDLNKQVIVSPYTQNSW   36 (129)
Q Consensus         6 lG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~   36 (129)
                      +...|+||.||.-|.-..    .||+||..+
T Consensus         9 l~gRr~c~~cG~~yn~~~----~~p~~g~~L   35 (58)
T 2rgx_A            9 LSGRRINPETGEVYHVKY----NPPPPGVKV   35 (58)
T ss_dssp             HHTEEECTTTCCEEETTT----BCCCTTCCC
T ss_pred             HHCCCCCCCHHHCCCCCC----CCCCCCCCC
T ss_conf             725663641122021102----566656522


No 16 
>>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} (A:)
Probab=90.44  E-value=0.21  Score=29.12  Aligned_cols=29  Identities=14%  Similarity=0.279  Sum_probs=23.8

Q ss_pred             CCCCCCCCEE--------EECCCCCCCCCCCCCEECH
Q ss_conf             1178888744--------2148887227789871532
Q gi|254780459|r   10 RTCPDTGKRF--------YDLNKQVIVSPYTQNSWPL   38 (129)
Q Consensus        10 R~C~~Cg~KF--------YDlnk~PiiCP~CG~e~~~   38 (129)
                      =+||.|++||        +|+...-.+|-+|++++..
T Consensus        15 y~Cp~C~~~ys~Lda~~Lld~~~~~F~C~~C~~el~e   51 (62)
T 1vd4_A           15 FKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEE   51 (62)
T ss_dssp             EECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEE
T ss_pred             EECCCCCCEECHHHHHHHCCCCCCEEEECCCCCEEEC
T ss_conf             0998988994676698715978991973589999764


No 17 
>>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=90.15  E-value=0.21  Score=29.15  Aligned_cols=30  Identities=13%  Similarity=0.248  Sum_probs=25.3

Q ss_pred             CCCCCCCCCCEE-EECCCCCCCCCCCCCEEC
Q ss_conf             831178888744-214888722778987153
Q gi|254780459|r    8 TKRTCPDTGKRF-YDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus         8 ~KR~C~~Cg~KF-YDlnk~PiiCP~CG~e~~   37 (129)
                      .-|-||.|+.-+ ++=.-..++||.||..|=
T Consensus        24 ~~~~CP~c~~~~~~~~~~~~~~C~~C~~~fC   54 (86)
T 2ct7_A           24 KFLWCAQCSFGFIYEREQLEATCPQCHQTFC   54 (86)
T ss_dssp             CEECCSSSCCCEECCCSCSCEECTTTCCEEC
T ss_pred             CCEECCCCCCEEEECCCCCEEECCCCCCEEC
T ss_conf             9648999997589779999778999898353


No 18 
>>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structural genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* (A:138-201)
Probab=89.96  E-value=0.17  Score=29.73  Aligned_cols=31  Identities=13%  Similarity=0.093  Sum_probs=24.4

Q ss_pred             HCCCCCCCCCCCEEEECCC---CCCCCCCCCCEE
Q ss_conf             2783117888874421488---872277898715
Q gi|254780459|r    6 LGTKRTCPDTGKRFYDLNK---QVIVSPYTQNSW   36 (129)
Q Consensus         6 lG~KR~C~~Cg~KFYDlnk---~PiiCP~CG~e~   36 (129)
                      +--.|+|+.||.-|=-+..   .+-+|..||..+
T Consensus         8 l~GRric~~cG~~yn~~~~pp~~~~~cd~cg~~L   41 (64)
T 2bbw_A            8 LSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPL   41 (64)
T ss_dssp             HHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBC
T ss_pred             HHHHEECCCCCCEEECCCCCCCCCCCCCCCCCCC
T ss_conf             3101000468831102457644466533334321


No 19 
>>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori} (A:)
Probab=89.67  E-value=0.23  Score=28.83  Aligned_cols=26  Identities=19%  Similarity=0.197  Sum_probs=18.6

Q ss_pred             CCCCCCCCCEEEECCCCC-CCCCCCCCE
Q ss_conf             311788887442148887-227789871
Q gi|254780459|r    9 KRTCPDTGKRFYDLNKQV-IVSPYTQNS   35 (129)
Q Consensus         9 KR~C~~Cg~KFYDlnk~P-iiCP~CG~e   35 (129)
                      .-.|++||..| -+.... ..||+||..
T Consensus        73 ~~~C~~Cg~~~-~~~~~~~~~CP~Cgs~   99 (119)
T 2kdx_A           73 ELECKDCSHVF-KPNALDYGVCEKCHSK   99 (119)
T ss_dssp             EEECSSSSCEE-CSCCSTTCCCSSSSSC
T ss_pred             EEECCCCCCEE-CCCCCCCCCCCCCCCC
T ss_conf             68977899885-3477517749097898


No 20 
>>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2} (A:)
Probab=89.51  E-value=0.18  Score=29.59  Aligned_cols=26  Identities=4%  Similarity=0.167  Sum_probs=20.6

Q ss_pred             CCCEEEECCCC--CCCCCCCCCEECHHH
Q ss_conf             88744214888--722778987153233
Q gi|254780459|r   15 TGKRFYDLNKQ--VIVSPYTQNSWPLAY   40 (129)
Q Consensus        15 Cg~KFYDlnk~--PiiCP~CG~e~~~~~   40 (129)
                      .-.-|+.|++.  |..|||||.-|...-
T Consensus        40 HPrVyi~ld~~~g~~~C~YCg~rfv~~~   67 (80)
T 2jvm_A           40 HPRVWLSIPHETGFVECGYCDRRYIHES   67 (80)
T ss_dssp             CCCEEEECCTTTCEEECSSSSCEEEEHH
T ss_pred             CCEEEEECCCCCCEEECCCCCCEEECHH
T ss_conf             9889787589998698889988556066


No 21 
>>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A* (A:)
Probab=89.11  E-value=0.22  Score=29.00  Aligned_cols=27  Identities=7%  Similarity=0.096  Sum_probs=18.4

Q ss_pred             CCCCCCCCCEEEEC--------------------CCCCCCCCCCCCE
Q ss_conf             31178888744214--------------------8887227789871
Q gi|254780459|r    9 KRTCPDTGKRFYDL--------------------NKQVIVSPYTQNS   35 (129)
Q Consensus         9 KR~C~~Cg~KFYDl--------------------nk~PiiCP~CG~e   35 (129)
                      +-.|++||..|-==                    -..-+.||+||..
T Consensus        70 ~~~C~~Cg~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~  116 (139)
T 3a43_A           70 VFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSH  116 (139)
T ss_dssp             EEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCC
T ss_pred             EEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             27986689840014100111212222223343234555459297798


No 22 
>>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc-binding motif, DNA replication; HET: DNA; 2.50A {Saccharomyces cerevisiae} (B:)
Probab=86.66  E-value=0.41  Score=27.31  Aligned_cols=35  Identities=14%  Similarity=0.152  Sum_probs=25.6

Q ss_pred             CCCCCCCCCCEEEECC-----C-----CCCCCCCCCCEECHHHHH
Q ss_conf             8311788887442148-----8-----872277898715323310
Q gi|254780459|r    8 TKRTCPDTGKRFYDLN-----K-----QVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDln-----k-----~PiiCP~CG~e~~~~~~~   42 (129)
                      .+-+||+||+.|-=-+     .     +-+.||+|+..|+|..+.
T Consensus        21 l~l~C~~C~~~~~f~gv~~~~~~~~~~~g~~C~~c~~~~~~~~i~   65 (206)
T 3flo_B           21 LELSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQLFTPLQLT   65 (206)
T ss_dssp             EEEECTTTCCEEEECSSSCCSSEEEETTEEEETTTCCBCCHHHHH
T ss_pred             EEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf             898899999832478710377762114778888989918999999


No 23 
>>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4KFT4, structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens pf-5} (A:)
Probab=86.49  E-value=0.33  Score=27.94  Aligned_cols=30  Identities=17%  Similarity=0.276  Sum_probs=25.0

Q ss_pred             CCCCCCCCE-EEECCCCCCCCCCCCCEECHH
Q ss_conf             117888874-421488872277898715323
Q gi|254780459|r   10 RTCPDTGKR-FYDLNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus        10 R~C~~Cg~K-FYDlnk~PiiCP~CG~e~~~~   39 (129)
                      -+||.|..+ .|+-.+.-++|+.||-.|++.
T Consensus         9 LaCP~ckg~L~~~~~~~~Lvc~~~~laYPI~   39 (69)
T 2pk7_A            9 LACPICKGPLKLSADKTELISKGAGLAYPIR   39 (69)
T ss_dssp             CCCTTTCCCCEECTTSSEEEETTTTEEEEEE
T ss_pred             EECCCCCCEEEEECCCCEEECCCCCCCCCCC
T ss_conf             0687999874696889979748768255151


No 24 
>>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor} (A:)
Probab=86.16  E-value=0.37  Score=27.58  Aligned_cols=34  Identities=12%  Similarity=0.145  Sum_probs=26.1

Q ss_pred             HCCCCCCCCCCCEE-EECCCCCCCCCCCCCEECHH
Q ss_conf             27831178888744-21488872277898715323
Q gi|254780459|r    6 LGTKRTCPDTGKRF-YDLNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus         6 lG~KR~C~~Cg~KF-YDlnk~PiiCP~CG~e~~~~   39 (129)
                      |=.--.||-|+.++ |+-...-++||.||..|++.
T Consensus         7 LL~iL~CP~ck~~L~~~~~~~~Lvc~~~~~~YPI~   41 (56)
T 2kpi_A            7 LLEILACPACHAPLEERDAELICTGQDCGLAYPVR   41 (56)
T ss_dssp             CTTSCCCSSSCSCEEEETTEEEECSSSCCCEEEEE
T ss_pred             HHHHHCCCCCCCCCEECCCCCEEECCCCCEECCCC
T ss_conf             99883388999945072877889768777036452


No 25 
>>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} (A:)
Probab=86.14  E-value=0.53  Score=26.66  Aligned_cols=37  Identities=19%  Similarity=0.363  Sum_probs=29.1

Q ss_pred             CHHHCCCCCCCCCCCEE-EECCCCCCCCCCCCCEECHH
Q ss_conf             52227831178888744-21488872277898715323
Q gi|254780459|r    3 KPELGTKRTCPDTGKRF-YDLNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus         3 K~elG~KR~C~~Cg~KF-YDlnk~PiiCP~CG~e~~~~   39 (129)
                      +++|=---.||.|+.++ |+-...-++||.||..|++.
T Consensus         4 d~~LL~iL~CP~ck~~L~~~~~~~~Lvc~~~~~~yPI~   41 (67)
T 2jny_A            4 DPQLLEVLACPKDKGPLRYLESEQLLVNERLNLAYRID   41 (67)
T ss_dssp             CGGGTCCCBCTTTCCBCEEETTTTEEEETTTTEEEEEE
T ss_pred             CHHHHHHHCCCCCCCCCEEECCCCEEECCCCCCCCCCC
T ss_conf             97999882687989846594889979888658446353


No 26 
>>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} (A:118-163)
Probab=86.01  E-value=0.39  Score=27.45  Aligned_cols=32  Identities=13%  Similarity=0.141  Sum_probs=23.5

Q ss_pred             CCCCCCCCCEEE-----E-C-CCCCCCCCCCCCEECHHH
Q ss_conf             311788887442-----1-4-888722778987153233
Q gi|254780459|r    9 KRTCPDTGKRFY-----D-L-NKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus         9 KR~C~~Cg~KFY-----D-l-nk~PiiCP~CG~e~~~~~   40 (129)
                      .-.|++||++|-     + + ...+..||.||..+-|..
T Consensus         4 ~~~C~~C~~~~~~~~~~~~~~~~~~P~C~~Cgg~iKPdV   42 (46)
T 1yc5_A            4 EYYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPNI   42 (46)
T ss_dssp             EEEETTTCCEEEHHHHHHHTTTCSSCBCTTTCCBEEEEE
T ss_pred             EEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCEECCCE
T ss_conf             357714566655567532002354687202487313528


No 27 
>>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Neisseria meningitidis Z2491} (A:)
Probab=85.62  E-value=0.41  Score=27.34  Aligned_cols=35  Identities=26%  Similarity=0.426  Sum_probs=26.7

Q ss_pred             HHCCCCCCCCCCCEE-EECCCCCCCCCCCCCEECHH
Q ss_conf             227831178888744-21488872277898715323
Q gi|254780459|r    5 ELGTKRTCPDTGKRF-YDLNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus         5 elG~KR~C~~Cg~KF-YDlnk~PiiCP~CG~e~~~~   39 (129)
                      +|=.--.||-|+... |+-...-++||.||..|++.
T Consensus         4 ~LL~iL~CP~ck~~L~~~~~~~~Lvc~~c~~~YPI~   39 (68)
T 2jr6_A            4 KFLDILVCPVTKGRLEYHQDKQELWSRQAKLAYPIK   39 (68)
T ss_dssp             SSSCCCBCSSSCCBCEEETTTTEEEETTTTEEEEEE
T ss_pred             HHHHHHCCCCCCCEEEEECCCCEEECCCCCCCCCCC
T ss_conf             999781797989981796889989628658656252


No 28 
>>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50} (A:)
Probab=85.58  E-value=0.44  Score=27.14  Aligned_cols=35  Identities=17%  Similarity=0.325  Sum_probs=26.9

Q ss_pred             HHCCCCCCCCCCCEE-EECCCCCCCCCCCCCEECHH
Q ss_conf             227831178888744-21488872277898715323
Q gi|254780459|r    5 ELGTKRTCPDTGKRF-YDLNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus         5 elG~KR~C~~Cg~KF-YDlnk~PiiCP~CG~e~~~~   39 (129)
                      +|=---.||.|+.+. |+-.+.-++|+.||..|++.
T Consensus         4 ~LL~iL~CP~ck~~L~~~~~~~~Lvc~~c~~~YPI~   39 (70)
T 2js4_A            4 RLLDILVCPVCKGRLEFQRAQAELVCNADRLAFPVR   39 (70)
T ss_dssp             CCCCCCBCTTTCCBEEEETTTTEEEETTTTEEEEEE
T ss_pred             HHHHHHCCCCCCCEEEEECCCCEEECCCCCCCCCCC
T ss_conf             889881687999985595889989647538656250


No 29 
>>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} (B:)
Probab=84.96  E-value=0.58  Score=26.40  Aligned_cols=23  Identities=26%  Similarity=0.699  Sum_probs=18.9

Q ss_pred             CCCCCCCCCCEEEECCCCCCCCCCCCCE
Q ss_conf             8311788887442148887227789871
Q gi|254780459|r    8 TKRTCPDTGKRFYDLNKQVIVSPYTQNS   35 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~e   35 (129)
                      .=|.|++|+.  |-|++   +||.||..
T Consensus         5 ~irkC~~c~~--YTLk~---~cP~cG~~   27 (60)
T 2apo_B            5 RXKKCPKCGL--YTLKE---ICPKCGEK   27 (60)
T ss_dssp             CCEECTTTCC--EESSS---BCSSSCSB
T ss_pred             HHHHCCCCCC--EECCC---CCCCCCCC
T ss_conf             6651874554--32566---37778887


No 30 
>>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} (A:)
Probab=83.94  E-value=0.52  Score=26.68  Aligned_cols=23  Identities=13%  Similarity=0.147  Sum_probs=18.7

Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCE
Q ss_conf             11788887442148887227789871
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQVIVSPYTQNS   35 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~PiiCP~CG~e   35 (129)
                      +.|++||+.||--   -..||.||..
T Consensus        48 ~rC~~CG~~~~Pp---r~~C~~Cg~~   70 (145)
T 2gnr_A           48 SKCSKCGRIFVPA---RSYCEHCFVK   70 (145)
T ss_dssp             EECTTTCCEEESC---CSEETTTTEE
T ss_pred             EEECCCCCEEECC---CCCCCCCCCC
T ss_conf             9918999788675---3568999997


No 31 
>>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} (L:)
Probab=83.61  E-value=0.95  Score=25.11  Aligned_cols=32  Identities=6%  Similarity=0.057  Sum_probs=27.2

Q ss_pred             HHCCCCCCCCCCCEEEECCCCCCCCCCCCCEE
Q ss_conf             22783117888874421488872277898715
Q gi|254780459|r    5 ELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSW   36 (129)
Q Consensus         5 elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~   36 (129)
                      .|...-+|-.||+++-==-++||-|..||.-+
T Consensus        24 ~~~v~YiCgeC~~~~~ik~~d~IrCreCG~RI   55 (70)
T 1twf_L           24 TATLKYICAECSSKLSLSRTDAVRCKDCGHRI   55 (70)
T ss_dssp             -CCCCEECSSSCCEECCCTTSTTCCSSSCCCC
T ss_pred             CCCEEEECCCCCCCEEECCCCCEECCCCCCEE
T ss_conf             85068887679982172899978878388577


No 32 
>>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthesis, NESG, structural genomics, PSI-2; 1.90A {Chromobacterium violaceum atcc 12472} (A:)
Probab=82.41  E-value=0.66  Score=26.08  Aligned_cols=30  Identities=17%  Similarity=0.409  Sum_probs=24.9

Q ss_pred             CCCCCCCCEE-EECCCCCCCCCCCCCEECHH
Q ss_conf             1178888744-21488872277898715323
Q gi|254780459|r   10 RTCPDTGKRF-YDLNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus        10 R~C~~Cg~KF-YDlnk~PiiCP~CG~e~~~~   39 (129)
                      -+||-|...+ |+-.+.-++|+.||-.|++.
T Consensus         9 LaCP~ckg~L~~~~~~~~Lvc~~~~laYPI~   39 (68)
T 2hf1_A            9 LVCPLCKGPLVFDKSKDELICKGDRLAFPIK   39 (68)
T ss_dssp             CBCTTTCCBCEEETTTTEEEETTTTEEEEEE
T ss_pred             HCCCCCCCEEEEECCCCEEECCCCCCCCCCC
T ss_conf             3687989873794889989638768656252


No 33 
>>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} (A:118-167)
Probab=82.10  E-value=0.64  Score=26.12  Aligned_cols=31  Identities=10%  Similarity=-0.035  Sum_probs=23.5

Q ss_pred             CCCCCCCCCEEEE-------CCCCCCCCCCCCC-EECHH
Q ss_conf             3117888874421-------4888722778987-15323
Q gi|254780459|r    9 KRTCPDTGKRFYD-------LNKQVIVSPYTQN-SWPLA   39 (129)
Q Consensus         9 KR~C~~Cg~KFYD-------lnk~PiiCP~CG~-e~~~~   39 (129)
                      +-.|..||.+|--       +...|..||.||. .+-|.
T Consensus         6 ~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~Cgg~ilrPd   44 (50)
T 1ma3_A            6 KLDCLDCHETYDWSEFVEDFNKGEIPRCRKCGSYYVKPR   44 (50)
T ss_dssp             EEEETTTCCEEEGGGTHHHHHTTCCCCCTTTCCSCEEEE
T ss_pred             CCEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCE
T ss_conf             346777676665112110000477788653568747871


No 34 
>>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase/structural protein complex; 2.10A {Pyrococcus abyssi} PDB: 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B (D:)
Probab=80.97  E-value=1  Score=24.90  Aligned_cols=22  Identities=32%  Similarity=0.773  Sum_probs=18.3

Q ss_pred             CCCCCCCCCEEEECCCCCCCCCCCCCE
Q ss_conf             311788887442148887227789871
Q gi|254780459|r    9 KRTCPDTGKRFYDLNKQVIVSPYTQNS   35 (129)
Q Consensus         9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e   35 (129)
                      =|.|++|+.  |-|++   +||.||..
T Consensus         5 ir~c~~c~~--YTLk~---~cP~cG~~   26 (60)
T 2aus_D            5 IRKCPKCGR--YTLKE---TCPVCGEK   26 (60)
T ss_dssp             CEECTTTCC--EESSS---BCTTTCSB
T ss_pred             HHHCCCCCC--EECCC---CCCCCCCC
T ss_conf             651862565--42345---37677883


No 35 
>>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondrial; NAD dependent deacetylase, sirtuin, substrate peptide complex, hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A (A:134-188)
Probab=80.82  E-value=0.62  Score=26.23  Aligned_cols=33  Identities=18%  Similarity=0.224  Sum_probs=23.9

Q ss_pred             CCCCCCCCCEEE------E-CCCCCCCCCCCCCEECHHHH
Q ss_conf             311788887442------1-48887227789871532331
Q gi|254780459|r    9 KRTCPDTGKRFY------D-LNKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus         9 KR~C~~Cg~KFY------D-lnk~PiiCP~CG~e~~~~~~   41 (129)
                      +-.|.+||.+|=      . +...+..||.||..+-|...
T Consensus         6 ~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~Cgg~lrP~VV   45 (55)
T 3glr_A            6 SATCTVCQRPFPGEDIRADVMADRVPRCPVCTGVVKPDIV   45 (55)
T ss_dssp             EEEETTTCCEEEGGGGHHHHHTTCCCBCTTTCCBEEEEEC
T ss_pred             CCEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEECCEE
T ss_conf             2567899998630343433304779987234672001078


No 36 
>>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A* (A:497-550)
Probab=80.13  E-value=0.99  Score=25.00  Aligned_cols=25  Identities=12%  Similarity=0.292  Sum_probs=15.5

Q ss_pred             CCCCCCCCEEEECCCC----------CCCCCCCCCEE
Q ss_conf             1178888744214888----------72277898715
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQ----------VIVSPYTQNSW   36 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~----------PiiCP~CG~e~   36 (129)
                      -+|++|.-  ..|...          .-.||.||+..
T Consensus         7 Y~C~~C~y--~ef~~~~~~~sG~DLpdk~CP~Cg~~l   41 (54)
T 3f2b_A            7 YVCPNCKH--SEFFNDGSVGSGFDLPDKNCPRCGTKY   41 (54)
T ss_dssp             EECTTTCC--EEECCSSCCSCGGGSCCCBCTTTCCBC
T ss_pred             CCCCCCCC--CCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             24653111--211465544567777644451120233


No 37 
>>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} (A:)
Probab=79.98  E-value=1.3  Score=24.17  Aligned_cols=34  Identities=12%  Similarity=0.106  Sum_probs=28.8

Q ss_pred             CCHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEE
Q ss_conf             75222783117888874421488872277898715
Q gi|254780459|r    2 AKPELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSW   36 (129)
Q Consensus         2 aK~elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~   36 (129)
                      +++.|-.-..|+.|+++|= |-+..-.|..||..|
T Consensus         4 ~~~~w~~~~~C~~C~~~F~-~~~rkhhCr~CG~~~   37 (73)
T 1vfy_A            4 TPADWIDSDACMICSKKFS-LLNRKHHCRSCGGVF   37 (73)
T ss_dssp             ---CCCCCSBCTTTCCBCB-TTBCCEECTTTCCEE
T ss_pred             CCCCCCCCCCCCCCCCCCC-CCCCEECCCCCCCEE
T ss_conf             8888999951237898367-863102356679887


No 38 
>>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* (A:1-266)
Probab=78.69  E-value=1.2  Score=24.52  Aligned_cols=30  Identities=20%  Similarity=0.334  Sum_probs=22.6

Q ss_pred             HHCC-CCCCCCCCCEEEECCCCCCCCC--CCCC
Q ss_conf             2278-3117888874421488872277--8987
Q gi|254780459|r    5 ELGT-KRTCPDTGKRFYDLNKQVIVSP--YTQN   34 (129)
Q Consensus         5 elG~-KR~C~~Cg~KFYDlnk~PiiCP--~CG~   34 (129)
                      +.|- +++|++||+.|+-++.+--+|+  -|+.
T Consensus        12 ~~gf~r~~C~~cg~~fwt~~~~r~~Cgd~pc~~   44 (266)
T 2zze_A           12 EEGWIRXXCXVCGXPFWTLDPDRETCGDPPCDE   44 (266)
T ss_dssp             HTTCEEEECTTTCCEEEESCTTCCSCSSTTTSC
T ss_pred             HCCCEEEECCCCCCCEECCCCCCCCCCCCCCCC
T ss_conf             669356200136872004799867789899877


No 39 
>>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} (L:)
Probab=78.37  E-value=1.8  Score=23.37  Aligned_cols=32  Identities=22%  Similarity=0.120  Sum_probs=26.5

Q ss_pred             HHCCCCCCCCCCCEEEECCCCCCCCCCCCCEE
Q ss_conf             22783117888874421488872277898715
Q gi|254780459|r    5 ELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSW   36 (129)
Q Consensus         5 elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~   36 (129)
                      -|-..-+|-.||+++-==-++||-|..||.-+
T Consensus        17 ~~~v~YiCgeC~~~~~lk~~d~IrCreCG~RI   48 (63)
T 3h0g_L           17 PATMIYLCADCGARNTIQAKEVIRCRECGHRV   48 (63)
T ss_dssp             --CCCCBCSSSCCBCCCCSSSCCCCSSSCCCC
T ss_pred             CCCEEEECCCCCCCCEECCCCCEECCCCCCEE
T ss_conf             86369886558984274899987827288686


No 40 
>>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} (A:51-605)
Probab=78.03  E-value=0.54  Score=26.61  Aligned_cols=27  Identities=11%  Similarity=0.064  Sum_probs=22.3

Q ss_pred             CCCCCCCCEEEECCCCC-CCCCCCCCEE
Q ss_conf             11788887442148887-2277898715
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQV-IVSPYTQNSW   36 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~P-iiCP~CG~e~   36 (129)
                      -.|.+||...|=+.+.. =.||.||.+-
T Consensus       491 ~~C~~cg~~g~~~~~~~~~~CP~Cgs~~  518 (555)
T 1h7b_A          491 DKCFTCGSTHEMTPTENGFVCSICGETD  518 (555)
T ss_dssp             EET-------------------------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             7665667666724577788799988877


No 41 
>>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi} (A:)
Probab=77.75  E-value=0.91  Score=25.22  Aligned_cols=23  Identities=13%  Similarity=0.406  Sum_probs=17.6

Q ss_pred             CEEEECCCC--CCCCCCCCCEECHH
Q ss_conf             744214888--72277898715323
Q gi|254780459|r   17 KRFYDLNKQ--VIVSPYTQNSWPLA   39 (129)
Q Consensus        17 ~KFYDlnk~--PiiCP~CG~e~~~~   39 (129)
                      .-|+.|.|.  +++|||||.-|...
T Consensus        29 rVyi~ld~~~~~v~C~YCg~rfv~~   53 (67)
T 2jrr_A           29 RVWLQIPEDTGWVECPYCDCKYVLK   53 (67)
T ss_dssp             EEEEECCTTTSEEEETTTTEEEEET
T ss_pred             EEEEECCCCCCEEECCCCCCEEEEC
T ss_conf             8999846999979888888898977


No 42 
>>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubredoxin-like, electron transport; 1.63A {Desulfovibrio vulgaris} (A:149-191)
Probab=77.70  E-value=1.1  Score=24.65  Aligned_cols=27  Identities=19%  Similarity=0.235  Sum_probs=21.0

Q ss_pred             CCCCCCCCCCEEEECCCCCCCCCCCCCE
Q ss_conf             8311788887442148887227789871
Q gi|254780459|r    8 TKRTCPDTGKRFYDLNKQVIVSPYTQNS   35 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~e   35 (129)
                      ++=+|..||--|+- ..-|-+||.||.-
T Consensus         6 ~~W~C~~CGyi~~G-~~aP~~CPvC~~~   32 (43)
T 1lko_A            6 TKWRCRNCGYVHEG-TGAPELCPACAHP   32 (43)
T ss_dssp             EEEEETTTCCEEEE-EECCSBCTTTCCB
T ss_pred             CEEECCCCCCEEEC-CCCCCCCCCCCCC
T ss_conf             54788999862018-9998859899996


No 43 
>>2j6a_A Protein TRM112; translation termination, methyltransferase, transferase, ERF1, nuclear protein, protein methylation; 1.7A {Saccharomyces cerevisiae} (A:)
Probab=77.03  E-value=0.84  Score=25.43  Aligned_cols=12  Identities=0%  Similarity=0.011  Sum_probs=8.1

Q ss_pred             CCCCCCCCEECH
Q ss_conf             227789871532
Q gi|254780459|r   27 IVSPYTQNSWPL   38 (129)
Q Consensus        27 iiCP~CG~e~~~   38 (129)
                      ++||.||..|++
T Consensus       110 LvCp~cgr~fpI  121 (141)
T 2j6a_A          110 MKCRNCGHIYYI  121 (141)
T ss_dssp             EECTTTCCEEEE
T ss_pred             EECCCCCCCCCC
T ss_conf             887999988213


No 44 
>>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} (A:1-260)
Probab=76.09  E-value=1.5  Score=23.88  Aligned_cols=29  Identities=24%  Similarity=0.551  Sum_probs=22.1

Q ss_pred             HHCC-CCCCCCCCCEEEECCCCCCCCC--CCC
Q ss_conf             2278-3117888874421488872277--898
Q gi|254780459|r    5 ELGT-KRTCPDTGKRFYDLNKQVIVSP--YTQ   33 (129)
Q Consensus         5 elG~-KR~C~~Cg~KFYDlnk~PiiCP--~CG   33 (129)
                      +.|- +++|++||..|+=++..--+|+  -|+
T Consensus        15 ~~g~~rk~C~~cg~~fwt~~~~r~~cgd~pc~   46 (260)
T 2ztg_A           15 ENGFVRKRCPKCGKHFWTADPEREICGDPPCE   46 (260)
T ss_dssp             TTTCEEECCCSSSSCEEECCSSCCCCCSSSSC
T ss_pred             HCCCEECCCCCCCCCEECCCCCCCCCCCCCCC
T ss_conf             47914133765687400469885778989998


No 45 
>>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious disease, electron transport; NMR {Mycobacterium tuberculosis} (A:)
Probab=75.69  E-value=1.7  Score=23.53  Aligned_cols=28  Identities=11%  Similarity=0.057  Sum_probs=16.9

Q ss_pred             CCCCCCCCCCEEEECC--------------CCCC--CCCCCCCE
Q ss_conf             8311788887442148--------------8872--27789871
Q gi|254780459|r    8 TKRTCPDTGKRFYDLN--------------KQVI--VSPYTQNS   35 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDln--------------k~Pi--iCP~CG~e   35 (129)
                      .+-+|+.||--|----              .-|-  +||-||+.
T Consensus        26 ~~~~C~~CgyiYd~~~Gd~~~~i~pGT~f~~lP~~w~CPvC~~~   69 (81)
T 2kn9_A           26 KLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAA   69 (81)
T ss_dssp             CEEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCC
T ss_pred             CEEECCCCCEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC
T ss_conf             85984999949776668846686989975679988779599895


No 46 
>>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} (A:139-190)
Probab=75.28  E-value=1.6  Score=23.73  Aligned_cols=32  Identities=16%  Similarity=0.109  Sum_probs=22.1

Q ss_pred             CCCCCCCCCEEEE---------CC-CCCCCCCCCCCEECHHH
Q ss_conf             3117888874421---------48-88722778987153233
Q gi|254780459|r    9 KRTCPDTGKRFYD---------LN-KQVIVSPYTQNSWPLAY   40 (129)
Q Consensus         9 KR~C~~Cg~KFYD---------ln-k~PiiCP~CG~e~~~~~   40 (129)
                      +-.|++|+++|=-         .+ ..+..||.||..+-|..
T Consensus         6 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~p~C~~Cgg~lrPdV   47 (52)
T 1q14_A            6 HCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELVKPAI   47 (52)
T ss_dssp             EEEETTTCCEECTHHHHHHTTSSSCSCCCBCTTTCCBEEEEE
T ss_pred             CCEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCCE
T ss_conf             212088898279899987765366677888888899805778


No 47 
>>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} (A:)
Probab=75.27  E-value=1.8  Score=23.44  Aligned_cols=29  Identities=17%  Similarity=0.213  Sum_probs=22.8

Q ss_pred             CCCCCCCCCC-EEEECCCCCCCCCCCCCEE
Q ss_conf             8311788887-4421488872277898715
Q gi|254780459|r    8 TKRTCPDTGK-RFYDLNKQVIVSPYTQNSW   36 (129)
Q Consensus         8 ~KR~C~~Cg~-KFYDlnk~PiiCP~CG~e~   36 (129)
                      ++|.||.||. -|-=--++-..|=+||-.+
T Consensus        17 lrk~Cp~Cg~GvfmA~H~dR~~CGKCg~T~   46 (55)
T 2k4x_A           17 KHRFCPRCGPGVFLAEHADRYSCGRCGYTE   46 (55)
T ss_dssp             SSCCCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred             ECCCCCCCCCCEEEEECCCCCCCCCCCCEE
T ss_conf             357596999947741259977644765607


No 48 
>>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens} (A:)
Probab=75.21  E-value=2.1  Score=22.95  Aligned_cols=29  Identities=10%  Similarity=-0.010  Sum_probs=19.2

Q ss_pred             CCCCCCC--CCCEEE--EC----CCCCCCCCCCCCEE
Q ss_conf             8311788--887442--14----88872277898715
Q gi|254780459|r    8 TKRTCPD--TGKRFY--DL----NKQVIVSPYTQNSW   36 (129)
Q Consensus         8 ~KR~C~~--Cg~KFY--Dl----nk~PiiCP~CG~e~   36 (129)
                      ..|-||.  |+.-+.  ..    ...+++||+||..|
T Consensus        24 ~~~~CP~~~C~~~~~~~~~~~~~~~~~~~c~~C~~~f   60 (80)
T 2jmo_A           24 GGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAF   60 (80)
T ss_dssp             SSCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCE
T ss_pred             CCEECCCCCCCEEEEECCCCCCCCCCCCEECCCCCEE
T ss_conf             3968999898978996698766555664408899478


No 49 
>>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=74.48  E-value=1.6  Score=23.78  Aligned_cols=31  Identities=13%  Similarity=0.064  Sum_probs=25.3

Q ss_pred             CCCCCCCCCCCEEEECCCCCCCCCCCCCEEC
Q ss_conf             7831178888744214888722778987153
Q gi|254780459|r    7 GTKRTCPDTGKRFYDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus         7 G~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~   37 (129)
                      ..-+.|..|+++|-=|-+.--.|..||..|=
T Consensus        23 ~~~~~C~~C~~~F~~l~~rkh~Cr~CG~~~C   53 (76)
T 2csz_A           23 YSDRTCARCQESLGRLSPKTNTCRGCNHLVC   53 (76)
T ss_dssp             CCCCBCSSSCCBCSSSCTTTSEETTTTEECC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             5898380119600484779885255988068


No 50 
>>1twf_B DNA-directed RNA polymerase II 140 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} (B:1155-1224)
Probab=74.18  E-value=1.7  Score=23.52  Aligned_cols=26  Identities=19%  Similarity=0.143  Sum_probs=21.5

Q ss_pred             CCCCCCCCEE--EECCCCCCCCCCCCCE
Q ss_conf             1178888744--2148887227789871
Q gi|254780459|r   10 RTCPDTGKRF--YDLNKQVIVSPYTQNS   35 (129)
Q Consensus        10 R~C~~Cg~KF--YDlnk~PiiCP~CG~e   35 (129)
                      .+|..||.--  |+.++.-..||.||..
T Consensus         7 ~VC~~CG~i~~~~~~~~~~~~C~~C~~~   34 (70)
T 1twf_B            7 HICGICGLMTVIAKLNHNQFECKGCDNK   34 (70)
T ss_dssp             EEESSSCSSCCEEETTTTEEEBTTTTBS
T ss_pred             EECCCCCCEEEEECCCCCCEEECCCCCC
T ss_conf             4003777468874144363170577788


No 51 
>>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1} (A:)
Probab=73.76  E-value=0.97  Score=25.02  Aligned_cols=32  Identities=13%  Similarity=0.236  Sum_probs=22.2

Q ss_pred             CCCCCCCCCCEEEECCC----------------------------CCCCCCCCCCEECHH
Q ss_conf             83117888874421488----------------------------872277898715323
Q gi|254780459|r    8 TKRTCPDTGKRFYDLNK----------------------------QVIVSPYTQNSWPLA   39 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDlnk----------------------------~PiiCP~CG~e~~~~   39 (129)
                      ---.||.|.....=...                            --++||.||..|++.
T Consensus         7 diLaCP~ck~~L~l~~~~~~~~~~~~~~~g~~~~~~~~~~~ei~~g~L~C~~c~~~YPI~   66 (97)
T 2k5r_A            7 HLLCSPDTRQPLSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRKQVFRIE   66 (97)
T ss_dssp             SSCCCCTTSSCCEECCHHHHHHHHHHHHHTCCBCTTSCBCCCCCSEEEECTTSCEEEEEE
T ss_pred             HHHCCCCCCCCCEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCEEEECC
T ss_conf             571787989913564532200123332011001223332244024848757648562443


No 52 
>>2waq_B DNA-directed RNA polymerase RPO2 subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_B 2pmz_B 3hkz_B (B:1056-1131)
Probab=73.62  E-value=2.1  Score=22.93  Aligned_cols=26  Identities=27%  Similarity=0.382  Sum_probs=21.2

Q ss_pred             CCCCCCCCEEE-ECCCCCCCCCCCCCE
Q ss_conf             11788887442-148887227789871
Q gi|254780459|r   10 RTCPDTGKRFY-DLNKQVIVSPYTQNS   35 (129)
Q Consensus        10 R~C~~Cg~KFY-Dlnk~PiiCP~CG~e   35 (129)
                      .+|..||.-.| +.++.-..||.||+.
T Consensus         7 ~VC~~CG~i~~~~~~~~~~~C~~C~~~   33 (76)
T 2waq_B            7 YVCDQCGYIGWYDKNKNKYVCPIHGDK   33 (76)
T ss_dssp             EECSSSCCCCCCCSSSSCCCCTTCSSS
T ss_pred             EECCCCCCEEEEECCCCCEECCCCCCC
T ss_conf             304677866888535871467635887


No 53 
>>2j01_6 50S ribosomal protein L33; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} (6:)
Probab=72.51  E-value=2.4  Score=22.60  Aligned_cols=35  Identities=20%  Similarity=0.350  Sum_probs=25.7

Q ss_pred             CCCHH-HCCCCCCCCCCCEEEECCCCCC----------CCCCCCCE
Q ss_conf             97522-2783117888874421488872----------27789871
Q gi|254780459|r    1 MAKPE-LGTKRTCPDTGKRFYDLNKQVI----------VSPYTQNS   35 (129)
Q Consensus         1 MaK~e-lG~KR~C~~Cg~KFYDlnk~Pi----------iCP~CG~e   35 (129)
                      |||.- -..+-.|..||.+||=-.|.+-          -||.|+.-
T Consensus         1 Mak~~r~~i~L~ct~c~~~nY~T~KN~~~~~erLelkKycp~c~kH   46 (54)
T 2j01_6            1 MASEVRIKLLLECTECKRRNYATEKNKRNTPNKLELRKYCPWCRKH   46 (54)
T ss_dssp             --------CCCCCCCTTSCCCCCCCCCTTSSCSSCCCCCCCSSSCC
T ss_pred             CCCCCEEEEEEEECCCCCCCEEECCCCCCCCCEEEEECCCCCCCCE
T ss_conf             9877523699985377788734977778896626897628777884


No 54 
>>2j01_5 50S ribosomal protein L32; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} (5:)
Probab=72.29  E-value=2.3  Score=22.70  Aligned_cols=21  Identities=19%  Similarity=0.376  Sum_probs=15.9

Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf             1178888744214888722778987
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQVIVSPYTQN   34 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~PiiCP~CG~   34 (129)
                      -.||+||.    +.+.=-+||+||.
T Consensus        31 ~~C~~cG~----~~~pH~vC~~CG~   51 (60)
T 2j01_5           31 VPCPECKA----MKPPHTVCPECGY   51 (60)
T ss_dssp             BCCSSSSS----CBCTTCBCTTTCC
T ss_pred             EECCCCCC----CCCCEEECCCCCC
T ss_conf             68999998----2066068798981


No 55 
>>1dx8_A Rubredoxin; zinc-substitution; NMR {Guillardia theta} (A:)
Probab=72.00  E-value=2.3  Score=22.74  Aligned_cols=28  Identities=14%  Similarity=0.210  Sum_probs=17.6

Q ss_pred             CCCCCCCCCCEEE--------------ECCCCCC--CCCCCCCE
Q ss_conf             8311788887442--------------1488872--27789871
Q gi|254780459|r    8 TKRTCPDTGKRFY--------------DLNKQVI--VSPYTQNS   35 (129)
Q Consensus         8 ~KR~C~~Cg~KFY--------------Dlnk~Pi--iCP~CG~e   35 (129)
                      .|-+|..||-.|=              -|..-|-  +||-||+.
T Consensus         6 ~~y~C~~CgyiYd~~~Gd~~~gI~pGT~F~~LPddw~CP~Cga~   49 (70)
T 1dx8_A            6 GKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSP   49 (70)
T ss_dssp             SCEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCB
T ss_pred             CEEECCCCCCEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC
T ss_conf             70782999908784447845687989996898898789399896


No 56 
>>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} (A:)
Probab=71.81  E-value=2  Score=23.12  Aligned_cols=28  Identities=21%  Similarity=0.160  Sum_probs=18.9

Q ss_pred             CCCCCCCCCCCEEEECCC---------------CCC--CCCCCCCE
Q ss_conf             783117888874421488---------------872--27789871
Q gi|254780459|r    7 GTKRTCPDTGKRFYDLNK---------------QVI--VSPYTQNS   35 (129)
Q Consensus         7 G~KR~C~~Cg~KFYDlnk---------------~Pi--iCP~CG~e   35 (129)
                      .++-+|+.||-. ||-.+               -|-  +||-||+-
T Consensus        33 ~~~~~C~~Cgyi-Ydp~~Gd~~~~i~pGT~f~~lP~~w~CP~C~~~   77 (87)
T 1s24_A           33 YLKWICITCGHI-YDEALGDEAEGFTPGTRFEDIPDDWCCPDCGAT   77 (87)
T ss_dssp             CCEEEETTTTEE-EETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCC
T ss_pred             CCEEECCCCCCE-ECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC
T ss_conf             644889999918-765657745686989986678888768599895


No 57 
>>3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} (B:1143-1210)
Probab=71.76  E-value=2.2  Score=22.81  Aligned_cols=27  Identities=19%  Similarity=0.103  Sum_probs=21.4

Q ss_pred             CCCCCCCCCE-EEECCCCCCCCCCCCCE
Q ss_conf             3117888874-42148887227789871
Q gi|254780459|r    9 KRTCPDTGKR-FYDLNKQVIVSPYTQNS   35 (129)
Q Consensus         9 KR~C~~Cg~K-FYDlnk~PiiCP~CG~e   35 (129)
                      =.+|..||.- +++.++....||.||..
T Consensus         7 ~~VC~~CG~~~~~~~~~~~~~C~~C~~~   34 (68)
T 3h0g_B            7 VIVCDICGLIAIASYKKDSYECRSCQNR   34 (68)
T ss_dssp             EEEESSSCCBCCCCSSSCCCCCTTTCCS
T ss_pred             EEECCCCCCEEEECCCCCCEECCCCCCC
T ss_conf             3503677876540244685565602389


No 58 
>>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae} (A:156-239)
Probab=71.54  E-value=0.77  Score=25.64  Aligned_cols=32  Identities=16%  Similarity=0.176  Sum_probs=23.3

Q ss_pred             CCCCCCCCCEE-------EECCCCCCCCCCCCCEECHHH
Q ss_conf             31178888744-------214888722778987153233
Q gi|254780459|r    9 KRTCPDTGKRF-------YDLNKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus         9 KR~C~~Cg~KF-------YDlnk~PiiCP~CG~e~~~~~   40 (129)
                      .-+|.+||.+|       .=+...|..|+.|+..+.+..
T Consensus         6 ~~~C~~Cg~~~~~~~i~~~i~~~~~p~C~~c~~~~~~~~   44 (84)
T 2hjh_A            6 TATCVTCHWNLPGERIFNKIRNLELPLCPYCYKKRREYF   44 (84)
T ss_dssp             EEEETTTCCEEEGGGGHHHHHTTCCCBCTTTHHHHHHHC
T ss_pred             EEEECCCCCCCCHHHHHHHHHCCCCCCCCCHHHHCCCCC
T ss_conf             378756798777899998885268998940111000136


No 59 
>>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=70.94  E-value=3.1  Score=21.92  Aligned_cols=35  Identities=17%  Similarity=0.103  Sum_probs=25.8

Q ss_pred             CCHHHC---CCCCCCCCCCEEEECCCCCCCCCCCCCEEC
Q ss_conf             752227---831178888744214888722778987153
Q gi|254780459|r    2 AKPELG---TKRTCPDTGKRFYDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus         2 aK~elG---~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~   37 (129)
                      +++.|-   .-..|+.|+++|-=|+| --.|..||..|=
T Consensus         4 ~~~~W~p~~~~~~C~~C~~~F~~~~r-rhhCr~CG~v~C   41 (84)
T 1x4u_A            4 GSSGRYPTNNFGNCTGCSATFSVLKK-RRSCSNCGNSFC   41 (84)
T ss_dssp             CCCCSCSCCCCSSCSSSCCCCCSSSC-CEECSSSCCEEC
T ss_pred             CCCCCCCCCCCCCCCCCCCEECCCCC-CCCCCCCCCEEC
T ss_conf             87786986373967486991007745-574546799628


No 60 
>>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (Z:)
Probab=70.64  E-value=2  Score=23.07  Aligned_cols=23  Identities=13%  Similarity=0.277  Sum_probs=17.0

Q ss_pred             CCCCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf             831178888744214888722778987
Q gi|254780459|r    8 TKRTCPDTGKRFYDLNKQVIVSPYTQN   34 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~   34 (129)
                      +=-.||+||.-    .+.=-+||+||.
T Consensus        29 ~l~~C~~cG~~----~~pH~vC~~CG~   51 (60)
T 2zjr_Z           29 NLTECPQCHGK----KLSHHICPNCGY   51 (60)
T ss_dssp             CCEECTTTCCE----ECTTBCCTTTCB
T ss_pred             CEEECCCCCCC----CCCEEECCCCCC
T ss_conf             61588999997----466067698881


No 61 
>>2qiz_A Ubiquitin conjugation factor E4; helical hairpin, ligase; 2.56A {Saccharomyces cerevisiae} PDB: 2qj0_A (A:908-982)
Probab=70.29  E-value=1.9  Score=23.27  Aligned_cols=19  Identities=11%  Similarity=0.186  Sum_probs=10.3

Q ss_pred             ECCCCCCCCCCCCCEECHH
Q ss_conf             1488872277898715323
Q gi|254780459|r   21 DLNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus        21 Dlnk~PiiCP~CG~e~~~~   39 (129)
                      ++-++|+++|.||+.|-..
T Consensus         6 ~~~~dpv~~~~CgH~fc~~   24 (75)
T 2qiz_A            6 TIMKDPVILPASKMNIDRS   24 (75)
T ss_dssp             SBCSSEEECTTTCCEEEHH
T ss_pred             HHHHCCCCCCCCCCEECHH
T ss_conf             6752687389999847699


No 62 
>>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {} (A:)
Probab=68.82  E-value=2.9  Score=22.09  Aligned_cols=27  Identities=26%  Similarity=0.292  Sum_probs=16.0

Q ss_pred             CCCCCCCCCCEEEECCC---------------CCC--CCCCCCCE
Q ss_conf             83117888874421488---------------872--27789871
Q gi|254780459|r    8 TKRTCPDTGKRFYDLNK---------------QVI--VSPYTQNS   35 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDlnk---------------~Pi--iCP~CG~e   35 (129)
                      .|-+|+.||--| |-.+               -|-  +||-||+.
T Consensus         2 ~k~~C~~CgyiY-d~~~Gd~~~~i~pGT~F~~LP~dw~CP~C~a~   45 (54)
T 4rxn_A            2 KKYTCTVCGYIY-DPEDGDPDDGVNPGTDFKDIPDDWVCPLCGVG   45 (54)
T ss_dssp             CCEEETTTCCEE-CTTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred             CCEECCCCCCEE-CCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC
T ss_conf             965919999288-85547845687989996888998899399894


No 63 
>>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei} (A:72-121)
Probab=68.69  E-value=2.1  Score=22.99  Aligned_cols=29  Identities=17%  Similarity=0.158  Sum_probs=17.8

Q ss_pred             CCCCCCCCC------EEEECCC--CCCCCCCCCCEEC
Q ss_conf             311788887------4421488--8722778987153
Q gi|254780459|r    9 KRTCPDTGK------RFYDLNK--QVIVSPYTQNSWP   37 (129)
Q Consensus         9 KR~C~~Cg~------KFYDlnk--~PiiCP~CG~e~~   37 (129)
                      |--|++||-      |+=.+-+  .--.||+||....
T Consensus         7 tikC~nCgyee~~Tvk~~~~e~~~~~~~CPkCgs~l~   43 (50)
T 3ir9_A            7 TTKCSVCGYENKWTRRWKPGEPAPAAGNCPKCGSSLE   43 (50)
T ss_dssp             EEEESSSSCEEEEEECCCC--CCCCCCBCTTTCCBEE
T ss_pred             EEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHH
T ss_conf             9975898726899970473223433456855563022


No 64 
>>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} (A:)
Probab=68.01  E-value=3.5  Score=21.62  Aligned_cols=30  Identities=7%  Similarity=-0.020  Sum_probs=22.9

Q ss_pred             CCCCCCCCEEEECCC----CCCCCCCCCCEECHH
Q ss_conf             117888874421488----872277898715323
Q gi|254780459|r   10 RTCPDTGKRFYDLNK----QVIVSPYTQNSWPLA   39 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk----~PiiCP~CG~e~~~~   39 (129)
                      -.|++|+.++.-.+.    ....||.||....|.
T Consensus       122 ~~C~~c~~~~~~~~~~~~~~~~~c~~c~g~lkP~  155 (249)
T 1m2k_A          122 VRCTSCNNSFEVESAPKIPPLPKCDKCGSLLRPG  155 (249)
T ss_dssp             EEESSSSCEEECSSCCCSSSCCBCSSSSSBEEEE
T ss_pred             EEECCCCCEEEHHHHCCCCCCCCCCCCCCEEECC
T ss_conf             8989989873312201168999865589980236


No 65 
>>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A 1rwd_A 1qcv_A 2pve_A 2pvx_A 2rdv_A 1rdv_A 1rb9_A* 2qkz_A 2ql0_A ... (A:)
Probab=67.07  E-value=3.3  Score=21.75  Aligned_cols=26  Identities=23%  Similarity=0.310  Sum_probs=15.1

Q ss_pred             CCCCCCCCCEEEECCC---------------CCC--CCCCCCCE
Q ss_conf             3117888874421488---------------872--27789871
Q gi|254780459|r    9 KRTCPDTGKRFYDLNK---------------QVI--VSPYTQNS   35 (129)
Q Consensus         9 KR~C~~Cg~KFYDlnk---------------~Pi--iCP~CG~e   35 (129)
                      |-+|+.||--| |-.+               -|-  +||-||+-
T Consensus         2 ky~C~~CgyvY-d~~~Gd~~~~i~pGT~F~~lP~dw~CP~C~a~   44 (52)
T 1yk4_A            2 KLSCKICGYIY-DEDEGDPDNGISPGTKFEDLPDDWVCPLCGAP   44 (52)
T ss_dssp             EEEESSSSCEE-ETTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred             CCCCCCCCEEE-CCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC
T ss_conf             55869999487-86657846687999997898998899399895


No 66 
>>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} (A:)
Probab=66.67  E-value=3.9  Score=21.33  Aligned_cols=28  Identities=14%  Similarity=0.184  Sum_probs=16.3

Q ss_pred             CCCCCCCCCCEEE--------------ECCCCCC--CCCCCCCE
Q ss_conf             8311788887442--------------1488872--27789871
Q gi|254780459|r    8 TKRTCPDTGKRFY--------------DLNKQVI--VSPYTQNS   35 (129)
Q Consensus         8 ~KR~C~~Cg~KFY--------------Dlnk~Pi--iCP~CG~e   35 (129)
                      .|-+|+.||-.|-              -|..-|-  +||-||+.
T Consensus         2 ~~y~C~~CgyiYd~~~Gd~~~~i~pGT~F~~lP~~w~CP~C~a~   45 (52)
T 1e8j_A            2 DIYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGAS   45 (52)
T ss_dssp             CCEECSSSCCCCCTTTCCTTTTCCSSCCTTSSCTTCCCSSSCCC
T ss_pred             CEEECCCCCEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC
T ss_conf             83791899908775547745687999987788998889599881


No 67 
>>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, electron transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa} (B:)
Probab=66.42  E-value=3.3  Score=21.80  Aligned_cols=27  Identities=22%  Similarity=0.171  Sum_probs=16.4

Q ss_pred             CCCCCCCCCCEEEECCC---------------CCC--CCCCCCCE
Q ss_conf             83117888874421488---------------872--27789871
Q gi|254780459|r    8 TKRTCPDTGKRFYDLNK---------------QVI--VSPYTQNS   35 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDlnk---------------~Pi--iCP~CG~e   35 (129)
                      .|-+|+.||--| |=.+               -|-  +||-||+.
T Consensus         2 ~~y~C~~CgyiY-d~~~Gd~~~~I~pGT~F~~LP~~w~CP~C~a~   45 (55)
T 2v3b_B            2 RKWQCVVCGFIY-DEALGLPEEGIPAGTRWEDIPADWVCPDCGVG   45 (55)
T ss_dssp             CEEEETTTCCEE-ETTTCBTTTTBCTTCCGGGSCTTCCCTTTCCC
T ss_pred             CCEECCCCCCEE-CCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC
T ss_conf             865939999188-95658845686989986788888679699996


No 68 
>>2b4y_A NAD-dependent deacetylase sirtuin-5; histone deacetylase, structural genomics, structural genomics consortium, SGC, hydrolase; HET: APR EPE; 1.90A {Homo sapiens} (A:127-194)
Probab=66.01  E-value=3  Score=22.06  Aligned_cols=32  Identities=13%  Similarity=0.012  Sum_probs=21.2

Q ss_pred             CCCCCCCCCEEEEC-------------------------CC-CCCCCCCCCCEECHHH
Q ss_conf             31178888744214-------------------------88-8722778987153233
Q gi|254780459|r    9 KRTCPDTGKRFYDL-------------------------NK-QVIVSPYTQNSWPLAY   40 (129)
Q Consensus         9 KR~C~~Cg~KFYDl-------------------------nk-~PiiCP~CG~e~~~~~   40 (129)
                      +-.|..||.+|.-.                         .+ ...-||.||..+-|..
T Consensus         6 ~~~C~~C~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~p~C~~CgG~lkPdV   63 (68)
T 2b4y_A            6 KTRCTSCGVVAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHV   63 (68)
T ss_dssp             EEEETTTCCEEECCCSSSSGGGTTCCCCSTTCCCCCCCGGGSCBCCSTTTCCBEEEEE
T ss_pred             EEEECCCCCCHHHHHCCCCHHHHCCCCCCCCHHHHHCCHHHCCCCCCCCCCCEECCCE
T ss_conf             7898888985002222105666055788865133203132255333356898747747


No 69 
>>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} (A:1-112)
Probab=65.85  E-value=3.3  Score=21.81  Aligned_cols=14  Identities=14%  Similarity=0.159  Sum_probs=6.7

Q ss_pred             EECCCCCCCCCCCC
Q ss_conf             21488872277898
Q gi|254780459|r   20 YDLNKQVIVSPYTQ   33 (129)
Q Consensus        20 YDlnk~PiiCP~CG   33 (129)
                      ||-.|..-.|+.||
T Consensus        92 ~d~dk~~yHC~~C~  105 (112)
T 2dkt_A           92 FDKDKRQYHCESCG  105 (112)
T ss_dssp             EECSSSEEEETTTT
T ss_pred             CCCCCCCCCCCCCC
T ss_conf             45787642468877


No 70 
>>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} (A:1-29,A:132-142,A:275-437)
Probab=65.41  E-value=2.4  Score=22.67  Aligned_cols=31  Identities=13%  Similarity=0.034  Sum_probs=21.1

Q ss_pred             CCCCCCCCCCCEE-EECCC------CCCCCCCCCCEEC
Q ss_conf             7831178888744-21488------8722778987153
Q gi|254780459|r    7 GTKRTCPDTGKRF-YDLNK------QVIVSPYTQNSWP   37 (129)
Q Consensus         7 G~KR~C~~Cg~KF-YDlnk------~PiiCP~CG~e~~   37 (129)
                      |.+..|++||..+ |-|++      .-..||+||....
T Consensus        96 r~~~~c~~c~~~~~~~~~~~~~~~~~~~~cp~cg~~l~  133 (203)
T 1dt9_A           96 RYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHE  133 (203)
T ss_dssp             CCCC---------CCCBCTTCSSCCCCCC---------
T ss_pred             EEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCE
T ss_conf             79996488874247741620023322256766686311


No 71 
>>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A (A:)
Probab=64.92  E-value=4.3  Score=21.11  Aligned_cols=29  Identities=10%  Similarity=0.063  Sum_probs=23.3

Q ss_pred             CCCCCCCCCCEEEECCCCCCCCCCCCCEEC
Q ss_conf             831178888744214888722778987153
Q gi|254780459|r    8 TKRTCPDTGKRFYDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~   37 (129)
                      .-..|+.|+++|-=|+| .-.|-.||..|=
T Consensus        18 ~~~~C~~C~~~F~~~~r-rhhCr~CG~v~C   46 (82)
T 2yw8_A           18 EATHCRQCEKEFSISRR-KHHCRNCGHIFC   46 (82)
T ss_dssp             CCCBCTTTCCBCBTTBC-CEECTTTCCEEC
T ss_pred             CCCCCCCCCCCCCCCCC-CCCCHHCCCEEC
T ss_conf             68947487981158533-511133097747


No 72 
>>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:35-79)
Probab=64.43  E-value=4  Score=21.26  Aligned_cols=24  Identities=21%  Similarity=0.305  Sum_probs=15.4

Q ss_pred             CCCCCEEEEC-----------CCCCCCCCCCCCEE
Q ss_conf             8888744214-----------88872277898715
Q gi|254780459|r   13 PDTGKRFYDL-----------NKQVIVSPYTQNSW   36 (129)
Q Consensus        13 ~~Cg~KFYDl-----------nk~PiiCP~CG~e~   36 (129)
                      +.||+.|--.           +-.|-.|+.||..|
T Consensus        10 ~~C~k~F~~~~~L~~H~r~HtgeKpy~C~~Cgk~F   44 (45)
T 2dlk_A           10 PACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS   44 (45)
T ss_dssp             TTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC
T ss_conf             88986212133402301604898596896988988


No 73 
>>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans R1} (A:83-244)
Probab=62.31  E-value=5.3  Score=20.51  Aligned_cols=29  Identities=14%  Similarity=0.139  Sum_probs=25.0

Q ss_pred             CCCCCCCC---EEEECCCCCCCCCCCCCEECH
Q ss_conf             11788887---442148887227789871532
Q gi|254780459|r   10 RTCPDTGK---RFYDLNKQVIVSPYTQNSWPL   38 (129)
Q Consensus        10 R~C~~Cg~---KFYDlnk~PiiCP~CG~e~~~   38 (129)
                      +.|..||.   .||.+..-=++|+.|+..+..
T Consensus        69 ~~C~~cg~~~~~~fs~~~gg~vc~~c~~~~~~  100 (162)
T 1u5k_A           69 ARCARCGAPDPEHPDPLGGQLLCSKCAALPPY  100 (162)
T ss_dssp             SBCTTTCCBSCCEECTTTSSEECTTTCSSCCC
T ss_pred             HHHHHCCCCCCCCCCCCCCEEECCCCCCCCCC
T ss_conf             66750478887600321390454676556888


No 74 
>>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-binding, ssDNA binding; 2.8A {Sulfolobus solfataricus} (A:112-268)
Probab=61.83  E-value=4  Score=21.29  Aligned_cols=26  Identities=4%  Similarity=-0.270  Sum_probs=18.6

Q ss_pred             CCCCCCCCEEEECCC----------CCCCCCCCCCE
Q ss_conf             117888874421488----------87227789871
Q gi|254780459|r   10 RTCPDTGKRFYDLNK----------QVIVSPYTQNS   35 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk----------~PiiCP~CG~e   35 (129)
                      -.|..||.+||=...          .|-.||+|+.-
T Consensus        31 f~C~~C~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~   66 (157)
T 2vl6_A           31 YKHIHPDCMQEFEWPEDEEMPEVLEMPTICPKCGKP   66 (157)
T ss_dssp             EEEECTTCCCEEESSTTSCCCTTCCCCSBCTTTCCB
T ss_pred             EEEECCCCCEEEEECCCEECCCCCCCCCCCCCCCCC
T ss_conf             999738983599968850337656788655667999


No 75 
>>3gmt_A Adenylate kinase; ssgcid, ATP- binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} (A:120-200)
Probab=61.69  E-value=4.3  Score=21.05  Aligned_cols=31  Identities=16%  Similarity=0.151  Sum_probs=23.3

Q ss_pred             HCCCCCCCCCCCEEEECCCC---CCCCCCCCCEE
Q ss_conf             27831178888744214888---72277898715
Q gi|254780459|r    6 LGTKRTCPDTGKRFYDLNKQ---VIVSPYTQNSW   36 (129)
Q Consensus         6 lG~KR~C~~Cg~KFYDlnk~---PiiCP~CG~e~   36 (129)
                      +--.|+|+.||.-|.-+...   ..+|..|+...
T Consensus         9 ~~~rri~~~~g~~y~~~~~~~~~~~~~~r~~~~l   42 (81)
T 3gmt_A            9 XSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPL   42 (81)
T ss_dssp             HHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBC
T ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             9577777887564543337643322223356632


No 76 
>>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} (A:)
Probab=61.59  E-value=3.1  Score=21.98  Aligned_cols=31  Identities=26%  Similarity=0.303  Sum_probs=24.4

Q ss_pred             HHCCCCCCCCCCCEEEECCCCCCCCCCCCCEEC
Q ss_conf             227831178888744214888722778987153
Q gi|254780459|r    5 ELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus         5 elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~   37 (129)
                      +....|.|.+|+++|.+=.  --.||+|+..|=
T Consensus        11 ~~~~s~~C~gC~~~~~~~~--~y~C~~C~~~FC   41 (59)
T 1z60_A           11 EYNGERFCYGCQGELKDQH--VYVCAVCQNVFC   41 (59)
T ss_dssp             HHCSCCEETTTTEECTTSE--EECCTTTTCCBC
T ss_pred             HCCCCCCCCCCCCCCCCCC--CEECCCCCCCCC
T ss_conf             1499888458788179986--269967898514


No 77 
>>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus} (A:)
Probab=61.38  E-value=3.4  Score=21.69  Aligned_cols=20  Identities=10%  Similarity=0.102  Sum_probs=12.9

Q ss_pred             CCCCCCCCCCCCCEECHHHH
Q ss_conf             48887227789871532331
Q gi|254780459|r   22 LNKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        22 lnk~PiiCP~CG~e~~~~~~   41 (129)
                      |+-.---||.||.+|--.++
T Consensus        47 ~~~F~FKCP~CGEEFyG~~L   66 (95)
T 2k5c_A           47 VEEFVFKCPVCGEEFYGKTL   66 (95)
T ss_dssp             HHHSEEECTTTCCEEETTSS
T ss_pred             HHHHHHCCCCCCHHHHCCCC
T ss_conf             98770008866578872468


No 78 
>>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} (A:)
Probab=60.97  E-value=3.3  Score=21.77  Aligned_cols=17  Identities=12%  Similarity=-0.001  Sum_probs=13.0

Q ss_pred             CCCCCCCCCCCCCEECH
Q ss_conf             48887227789871532
Q gi|254780459|r   22 LNKQVIVSPYTQNSWPL   38 (129)
Q Consensus        22 lnk~PiiCP~CG~e~~~   38 (129)
                      +.-.|.+||-||+.+--
T Consensus        20 ~SdqPatCPlC~A~iRQ   36 (54)
T 1yui_A           20 QSEQPATCPICYAVIRQ   36 (54)
T ss_dssp             TSSCCEECTTTCCEESS
T ss_pred             CCCCCCCCCHHHHHHHH
T ss_conf             23599777048999998


No 79 
>>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} (A:)
Probab=60.97  E-value=3.7  Score=21.47  Aligned_cols=27  Identities=11%  Similarity=0.241  Sum_probs=19.9

Q ss_pred             CCCCCCCCEEEECCC-CCCCCC--CCCCEE
Q ss_conf             117888874421488-872277--898715
Q gi|254780459|r   10 RTCPDTGKRFYDLNK-QVIVSP--YTQNSW   36 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk-~PiiCP--~CG~e~   36 (129)
                      |.||.|++.+--..= .=++|-  .||+.|
T Consensus         7 k~CP~C~~~i~K~~GCnhm~C~~~~C~~~F   36 (60)
T 1wd2_A            7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEF   36 (60)
T ss_dssp             CCCTTTCCCCSSCCSCCSSSCCSSGGGSCC
T ss_pred             CCCCCCCCEEEECCCCCCEEECCCCCCCEE
T ss_conf             699799987887789987796998999849


No 80 
>>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} (A:)
Probab=60.18  E-value=5.4  Score=20.49  Aligned_cols=27  Identities=22%  Similarity=0.305  Sum_probs=17.2

Q ss_pred             CCCCCCCCCCEEEECCCC--------C--CCCCCCCCE
Q ss_conf             831178888744214888--------7--227789871
Q gi|254780459|r    8 TKRTCPDTGKRFYDLNKQ--------V--IVSPYTQNS   35 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDlnk~--------P--iiCP~CG~e   35 (129)
                      .|-+|+.||--| |-.+-        |  -+||-||+.
T Consensus         2 ~~y~C~~CgyiY-d~~~Gdgt~F~~LP~~w~CP~C~a~   38 (45)
T 6rxn_A            2 QKYVCNVCGYEY-DPAEHDNVPFDQLPDDWCCPVCGVS   38 (45)
T ss_dssp             CCEEETTTCCEE-CGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred             CCEEECCCCEEE-CCCCCCCCCHHHCCCCCCCCCCCCC
T ss_conf             975908998187-7744799887788987789599892


No 81 
>>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} (A:56-85,A:135-183)
Probab=59.77  E-value=5  Score=20.68  Aligned_cols=34  Identities=15%  Similarity=0.103  Sum_probs=20.6

Q ss_pred             CCCCCCCCCCCEEEE--------CCCCC--CCCCCCCCEECHHH
Q ss_conf             783117888874421--------48887--22778987153233
Q gi|254780459|r    7 GTKRTCPDTGKRFYD--------LNKQV--IVSPYTQNSWPLAY   40 (129)
Q Consensus         7 G~KR~C~~Cg~KFYD--------lnk~P--iiCP~CG~e~~~~~   40 (129)
                      +..-+|.+||++|=-        -.+.|  ..||+||..+-|..
T Consensus        30 ~a~~~C~~C~~~y~~~~i~~~i~~~~vp~cp~C~~CgGiiKPDV   73 (79)
T 1q1a_A           30 GAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELVKPAI   73 (79)
T ss_dssp             SEEEEETTTCCEECHHHHHHHHTCSSCCSCCBCTTTCCBEEEEE
T ss_pred             CCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCCE
T ss_conf             64468389998289899988775346666887777899866728


No 82 
>>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=59.63  E-value=4.2  Score=21.17  Aligned_cols=31  Identities=16%  Similarity=0.260  Sum_probs=21.6

Q ss_pred             CCCCCCCCCCCEEEECCCCCCCCCCCCCEECHHHH
Q ss_conf             78311788887442148887227789871532331
Q gi|254780459|r    7 GTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus         7 G~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~   41 (129)
                      -..-+||=|...|    ++|++.|.||+.|--.-+
T Consensus         5 ~~~~~C~IC~~~~----~~pv~~~~CgH~fC~~Ci   35 (94)
T 2yu4_A            5 SSGFTCPITKEEM----KKPVKNKVCGHTYEEDAI   35 (94)
T ss_dssp             SSCCBCTTTCSBC----SSEEEESSSCCEEEHHHH
T ss_pred             CCCCCCCCCCCHH----HCCEECCCCCCHHHHHHH
T ss_conf             9774992619575----397062678657799999


No 83 
>>2f4m_A Peptide N-glycanase; glycoproteins, ubiquitin-dependent protein degradation, nucleotide excision repair, peptide:N-glycanase; 1.85A {Mus musculus} (A:75-142)
Probab=59.55  E-value=6.4  Score=20.03  Aligned_cols=44  Identities=9%  Similarity=-0.037  Sum_probs=28.7

Q ss_pred             HHCCCCCCCCCCCEEEECCC-CC-C--------------CCCCCCCEE------CHHHHHCCCCCC
Q ss_conf             22783117888874421488-87-2--------------277898715------323310123443
Q gi|254780459|r    5 ELGTKRTCPDTGKRFYDLNK-QV-I--------------VSPYTQNSW------PLAYFEAPTSPE   48 (129)
Q Consensus         5 elG~KR~C~~Cg~KFYDlnk-~P-i--------------iCP~CG~e~------~~~~~~~~~~~~   48 (129)
                      .|=.|-.|+.||.+--=... .| .              .|..||+..      +|..|+..|++|
T Consensus         3 ~Wvn~P~C~~Cg~~t~~~~~~~~pt~~E~~~ga~rVE~y~C~~C~~~~RFPRYn~p~kLLeTR~GR   68 (68)
T 2f4m_A            3 RWVNNIVCSKCGGETRSRDEALLPNDDELKWGAKNVENHYCDACQLSNRFPRYNNPEKLLETRCGR   68 (68)
T ss_dssp             EECSSCCCTTTCCCCEECSSCBCCCSHHHHTTCCCEEEEEETTTTEEEEEECCCCHHHHHHHCEES
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEEEECCCCCCCEECCCCCCHHHHHHHCCCC
T ss_conf             883798865468865025878898967853688568999758888721178769999999856856


No 84 
>>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} (Z:)
Probab=59.17  E-value=5.1  Score=20.62  Aligned_cols=29  Identities=17%  Similarity=0.546  Sum_probs=21.2

Q ss_pred             CCCCCCCCCCCEEEECCCC---CCCCCCCCCEEC
Q ss_conf             7831178888744214888---722778987153
Q gi|254780459|r    7 GTKRTCPDTGKRFYDLNKQ---VIVSPYTQNSWP   37 (129)
Q Consensus         7 G~KR~C~~Cg~KFYDlnk~---PiiCP~CG~e~~   37 (129)
                      -.|++||.||+.-  +.|.   -=.|-+||..|.
T Consensus        58 ~aky~CpfCgk~~--vkR~a~GIW~C~~C~~~~A   89 (116)
T 3cc2_Z           58 NEDHACPNCGEDR--VDRQGTGIWQCSYCDYKFT   89 (116)
T ss_dssp             HSCEECSSSCCEE--EEEEETTEEEETTTCCEEE
T ss_pred             HCCCCCCCCCCCE--EEEEEEEEEECCCCCCEEE
T ss_conf             1684188889970--4778888878588899884


No 85 
>>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=58.11  E-value=3.9  Score=21.32  Aligned_cols=19  Identities=5%  Similarity=0.006  Sum_probs=11.8

Q ss_pred             CCCCCCCCCCCEECHHHHH
Q ss_conf             8872277898715323310
Q gi|254780459|r   24 KQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        24 k~PiiCP~CG~e~~~~~~~   42 (129)
                      +.|-+||+|...|.+...+
T Consensus        10 ~~~raCPkCN~~Fnl~dpL   28 (49)
T 2e72_A           10 GGRKICPRCNAQFRVTEAL   28 (49)
T ss_dssp             SSCCCCTTTCCCCSSHHHH
T ss_pred             CCCEECCCCCCCEEHHHHH
T ss_conf             8843076555400327764


No 86 
>>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens} (A:)
Probab=57.86  E-value=6.7  Score=19.90  Aligned_cols=33  Identities=12%  Similarity=0.278  Sum_probs=22.3

Q ss_pred             CCCCC-CCCEEEE----------CCCCCCCCCCCCCEECHHHHH
Q ss_conf             11788-8874421----------488872277898715323310
Q gi|254780459|r   10 RTCPD-TGKRFYD----------LNKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        10 R~C~~-Cg~KFYD----------lnk~PiiCP~CG~e~~~~~~~   42 (129)
                      ..|++ |+.+|-=          =.+.++.|++||..|....+.
T Consensus        17 v~C~~~C~~~i~r~~l~~H~~~~C~~r~~~C~~C~~~~~~~~l~   60 (76)
T 2yuc_A           17 IPCPNRCPMKLSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYE   60 (76)
T ss_dssp             CBCTTCCSCBCCSSSSTTTTTTSCTTSCCCCSSSCCCCCHHHHH
T ss_pred             CCCCHHHCCHHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHH
T ss_conf             55750215296898998771744897770699997405899999


No 87 
>>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} (A:)
Probab=57.68  E-value=7  Score=19.79  Aligned_cols=28  Identities=11%  Similarity=0.151  Sum_probs=20.8

Q ss_pred             CCCCCCCCCCEEEECCCCCCCCCCCCCEE
Q ss_conf             83117888874421488872277898715
Q gi|254780459|r    8 TKRTCPDTGKRFYDLNKQVIVSPYTQNSW   36 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~   36 (129)
                      .-..|+.|+++|==|+| --.|-.||..|
T Consensus         8 ~~~~C~~C~~~F~~~~r-rhhCr~CG~~~   35 (88)
T 1wfk_A            8 MESRCYGCAVKFTLFKK-EYGCKNCGRAF   35 (88)
T ss_dssp             CCSBCTTTCCBCCSSSC-EEECSSSCCEE
T ss_pred             CCCCCCCCCCHHCCCCC-CCCCCCCCCCC
T ss_conf             56818355951247454-62643039020


No 88 
>>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} (A:137-176)
Probab=57.62  E-value=7.6  Score=19.57  Aligned_cols=34  Identities=15%  Similarity=0.091  Sum_probs=24.9

Q ss_pred             CCCCCCCCCCE-EEECCCCCCCCCCCCCEECHHHHHCCCC
Q ss_conf             83117888874-4214888722778987153233101234
Q gi|254780459|r    8 TKRTCPDTGKR-FYDLNKQVIVSPYTQNSWPLAYFEAPTS   46 (129)
Q Consensus         8 ~KR~C~~Cg~K-FYDlnk~PiiCP~CG~e~~~~~~~~~~~   46 (129)
                      .+-+||.||.. =|     =-.|=.||..|.|..|+.++-
T Consensus         3 V~G~CP~C~~~~a~-----GDqCe~CG~~~~p~eLi~P~c   37 (40)
T 1rqg_A            3 VIGTCPYCGAEDQK-----GDQCEVCGRPLTPEILINPRC   37 (40)
T ss_dssp             CCSBCSSSCCSCCC-----TTTCSSSCCCCCTTSSBSCBC
T ss_pred             EECCCCCCCCCCCC-----CCEECCCCCCCCCCCCCCCCC
T ss_conf             02614654655455-----520023354332000345432


No 89 
>>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} (A:316-426)
Probab=57.11  E-value=4  Score=21.25  Aligned_cols=13  Identities=8%  Similarity=-0.128  Sum_probs=10.4

Q ss_pred             CCCCCCCCCCEEC
Q ss_conf             8722778987153
Q gi|254780459|r   25 QVIVSPYTQNSWP   37 (129)
Q Consensus        25 ~PiiCP~CG~e~~   37 (129)
                      -|-.||.||+.+.
T Consensus        87 ~P~~CP~C~s~l~   99 (111)
T 1dgs_A           87 WPEACPECGHRLV   99 (111)
T ss_dssp             CCSBCTTTCCBCE
T ss_pred             CCCCCCCCCCEEE
T ss_conf             9998999899801


No 90 
>>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} (A:27-60)
Probab=56.14  E-value=5.4  Score=20.46  Aligned_cols=21  Identities=5%  Similarity=-0.017  Sum_probs=15.5

Q ss_pred             CCCCCCCCCCCCEECHHHHHC
Q ss_conf             888722778987153233101
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFEA   43 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~~   43 (129)
                      |-.|-.|+.||..|.-...+.
T Consensus         1 nEKPf~C~~Cgk~F~R~d~L~   21 (34)
T 2adr_A            1 NEKPYPCGLCNRAFTRRDLLI   21 (34)
T ss_dssp             SSCSEECTTTCCEESSHHHHH
T ss_pred             CCCCCCCCCCCCCCCCHHHHH
T ss_conf             332666785698907789999


No 91 
>>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} (9:)
Probab=55.68  E-value=8.2  Score=19.36  Aligned_cols=29  Identities=10%  Similarity=0.267  Sum_probs=21.3

Q ss_pred             CCCCCCCCCCCEEEECCCCC---CCCCCCCCEEC
Q ss_conf             78311788887442148887---22778987153
Q gi|254780459|r    7 GTKRTCPDTGKRFYDLNKQV---IVSPYTQNSWP   37 (129)
Q Consensus         7 G~KR~C~~Cg~KFYDlnk~P---iiCP~CG~e~~   37 (129)
                      -.|.+||.||..  -+.|.-   =.|.+||..|.
T Consensus        24 ~~ky~C~fCgk~--~vkR~a~GIW~C~~C~~~~A   55 (72)
T 3jyw_9           24 HARYDCSFCGKK--TVKRGAAGIWTCSCCKKTVA   55 (72)
T ss_dssp             HSCBCCSSCCSS--CBSBCSSSCBCCSSSCCCCC
T ss_pred             CCCCCCCCCCCC--EEEEEEEEEEECCCCCCEEE
T ss_conf             378409999997--35898888878899998871


No 92 
>>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, metal-binding, nucleotide-binding; HET: CIT; 1.40A {Escherichia coli k-12} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A (A:152-192)
Probab=55.62  E-value=5.7  Score=20.34  Aligned_cols=33  Identities=21%  Similarity=0.257  Sum_probs=24.8

Q ss_pred             CCCCCCCCCE-EEECCCCCCCCCCCCCEECHHHHHCCCC
Q ss_conf             3117888874-4214888722778987153233101234
Q gi|254780459|r    9 KRTCPDTGKR-FYDLNKQVIVSPYTQNSWPLAYFEAPTS   46 (129)
Q Consensus         9 KR~C~~Cg~K-FYDlnk~PiiCP~CG~e~~~~~~~~~~~   46 (129)
                      +-+||.||.. =|     =-.|-+||..+.|..|+.++-
T Consensus         4 ~G~CP~C~~~~a~-----GDqCe~CG~~~~p~eLi~P~c   37 (41)
T 3h99_A            4 KGTCPKCKSPDQY-----GDNCEVCGATYSPTELIEPKS   37 (41)
T ss_dssp             EEECTTTCCSSEE-----TTBCTTTCCBCCGGGCEEEEE
T ss_pred             EEECCCCCCCCCC-----CCCCEECCCCCCHHHHCCCCC
T ss_conf             4135777761006-----886632587698577307755


No 93 
>>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} (A:)
Probab=55.25  E-value=5.2  Score=20.55  Aligned_cols=35  Identities=11%  Similarity=0.015  Sum_probs=23.2

Q ss_pred             HHCCCCCCCCCCCEEEECCCCCCCCCCCCCEECHHHHHC
Q ss_conf             227831178888744214888722778987153233101
Q gi|254780459|r    5 ELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEA   43 (129)
Q Consensus         5 elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~   43 (129)
                      ++...-+||-|..    +-++|+++|.||+.|--.-+.+
T Consensus        18 ~~~~~~~C~IC~~----~~~~pv~~~~CgH~fC~~Ci~~   52 (98)
T 1wgm_A           18 DACDEFLDPIMST----LMCDPVVLPSSRVTVDRSTIAR   52 (98)
T ss_dssp             SCCTTTBCTTTCS----BCSSEEECTTTCCEEEHHHHHH
T ss_pred             CCHHHHCCCCHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8907609837034----8876887211201744999999


No 94 
>>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} (C:136-267)
Probab=54.61  E-value=5.7  Score=20.32  Aligned_cols=31  Identities=19%  Similarity=0.260  Sum_probs=20.0

Q ss_pred             CCCCCCCCCCEEEECCCCCCCCCCCCCEECHHHHH
Q ss_conf             83117888874421488872277898715323310
Q gi|254780459|r    8 TKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~   42 (129)
                      .--+||=|...|+    +|++++.||+.|--.-+.
T Consensus        45 ~~~~CpIC~~~~~----~p~~~~~CgH~fC~~Ci~   75 (132)
T 3htk_C           45 IELTCPITCKPYE----APLISRKCNHVFDRDGIQ   75 (132)
T ss_dssp             CCSBCTTTSSBCS----SEEEESSSCCEEEHHHHH
T ss_pred             EEEECCCCCCHHH----CCCCCCCCCCHHHHHHHH
T ss_conf             3678928170774----643356588768799999


No 95 
>>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major} (A:1-52)
Probab=54.19  E-value=8  Score=19.43  Aligned_cols=33  Identities=12%  Similarity=0.001  Sum_probs=23.7

Q ss_pred             CHHHC---CCCCCCCCCCEEEECCCCCCCCCCCCCEE
Q ss_conf             52227---83117888874421488872277898715
Q gi|254780459|r    3 KPELG---TKRTCPDTGKRFYDLNKQVIVSPYTQNSW   36 (129)
Q Consensus         3 K~elG---~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~   36 (129)
                      ++-|=   .-..|+.|+++|-=|+| --.|-.||..|
T Consensus        12 ~~~W~~d~~~~~C~~C~~~F~~~~r-khHCR~CG~vf   47 (52)
T 1z2q_A           12 KGYWQEDEDAPACNGCGCVFTTTVR-RHHCRNCGYVL   47 (52)
T ss_dssp             CSCCCCTTTCCBCTTTCCBCCTTSC-CEECTTTCCEE
T ss_pred             CCCCCCCCCCCCCCCCCCEECCCCC-CCCCCCCCCEE
T ss_conf             6748786658807688994057545-14256689785


No 96 
>>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=52.06  E-value=1.7  Score=23.50  Aligned_cols=28  Identities=4%  Similarity=0.107  Sum_probs=18.1

Q ss_pred             CEEEECCCCCCCCCCCCCEECHHHHHCC
Q ss_conf             7442148887227789871532331012
Q gi|254780459|r   17 KRFYDLNKQVIVSPYTQNSWPLAYFEAP   44 (129)
Q Consensus        17 ~KFYDlnk~PiiCP~CG~e~~~~~~~~~   44 (129)
                      .+++.-.+..+.||.|.+.+.+..+...
T Consensus        47 ~~~~~~~~~~~~CP~Cr~~~~~~~~~~~   74 (88)
T 2ct2_A           47 EKLLASSINGVRCPFCSKITRITSLTQL   74 (88)
T ss_dssp             HHHHHHCSSCBCCTTTCCCBCCSSTTTS
T ss_pred             HHHHHHCCCCCCCCCCCCEEECCCHHHC
T ss_conf             9999968998699999986107783247


No 97 
>>3jwp_A Transcriptional regulatory protein SIR2 homologue; malaria, transcription regulation, structural genomics, structural genomics consortium; HET: AMP PGE; 2.65A {Plasmodium falciparum} (A:124-175)
Probab=51.02  E-value=9.2  Score=19.05  Aligned_cols=32  Identities=9%  Similarity=-0.059  Sum_probs=21.9

Q ss_pred             CCCCCCCCCEEE---------ECCC-CCCCCCCCCCEECHHH
Q ss_conf             311788887442---------1488-8722778987153233
Q gi|254780459|r    9 KRTCPDTGKRFY---------DLNK-QVIVSPYTQNSWPLAY   40 (129)
Q Consensus         9 KR~C~~Cg~KFY---------Dlnk-~PiiCP~CG~e~~~~~   40 (129)
                      +-.|..|+++|=         .++. ..+.|+.||..+-|..
T Consensus         6 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~cc~Cgg~lrPdV   47 (52)
T 3jwp_A            6 EAVCCTCNKIVKLNKIXLQKTSHFXHQLPPECPCGGIFKPNI   47 (52)
T ss_dssp             EEEETTTCCEEECCHHHHSTTSSTTTSSSCBCTTSCBEEEEE
T ss_pred             EEEECCCCCCCCCCHHHHCCCHHHCCCCCCCCCCCCCEEEEE
T ss_conf             688788998743320011000010147898766677323227


No 98 
>>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein kinase inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} (A:121-157)
Probab=50.93  E-value=9.5  Score=18.97  Aligned_cols=11  Identities=9%  Similarity=0.274  Sum_probs=5.7

Q ss_pred             CCCCCCCEECH
Q ss_conf             27789871532
Q gi|254780459|r   28 VSPYTQNSWPL   38 (129)
Q Consensus        28 iCP~CG~e~~~   38 (129)
                      +||+||+.|..
T Consensus        14 ~c~~cG~~Yh~   24 (37)
T 3be4_A           14 THPASGRIYHV   24 (37)
T ss_dssp             ECTTTCCEEET
T ss_pred             CCCCCCCCCCC
T ss_conf             67775341334


No 99 
>>3k35_A Mono-ADP-ribosyltransferase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, structural genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens} (A:)
Probab=50.23  E-value=7.5  Score=19.59  Aligned_cols=31  Identities=3%  Similarity=0.008  Sum_probs=21.1

Q ss_pred             CCCCCCCCCEEEE---------------CC-CCCCCCCCCCCEECHH
Q ss_conf             3117888874421---------------48-8872277898715323
Q gi|254780459|r    9 KRTCPDTGKRFYD---------------LN-KQVIVSPYTQNSWPLA   39 (129)
Q Consensus         9 KR~C~~Cg~KFYD---------------ln-k~PiiCP~CG~e~~~~   39 (129)
                      +-.|..|+.+|--               .. .....||.||...-|.
T Consensus       138 ~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~C~~C~g~lrP~  184 (318)
T 3k35_A          138 VEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGELRDT  184 (318)
T ss_dssp             EEEETTTCCEEECSSCCSCCSSCEEEEECCC--------CCCEEEEC
T ss_pred             EEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             79989999863477755665135777656422356764468856897


No 100
>>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=50.09  E-value=7.7  Score=19.52  Aligned_cols=16  Identities=6%  Similarity=0.050  Sum_probs=9.8

Q ss_pred             CCCCCCCCCCCCEECH
Q ss_conf             8887227789871532
Q gi|254780459|r   23 NKQVIVSPYTQNSWPL   38 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~   38 (129)
                      +..|-.|+.||..|.-
T Consensus         7 gekp~~C~~Cgk~F~~   22 (45)
T 2epq_A            7 GEKPYSCPVCGLRFKR   22 (45)
T ss_dssp             SCCSSEETTTTEECSC
T ss_pred             CCCCEECCCCCCCCCC
T ss_conf             7887866887764501


No 101
>>2owo_A DNA ligase; protein/DNA complex, ligase/DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli K12} (A:318-477)
Probab=49.38  E-value=7.1  Score=19.73  Aligned_cols=30  Identities=13%  Similarity=0.124  Sum_probs=16.3

Q ss_pred             HCCCCCCCCCCCEEEECCC-CCCCCCC---CCCE
Q ss_conf             2783117888874421488-8722778---9871
Q gi|254780459|r    6 LGTKRTCPDTGKRFYDLNK-QVIVSPY---TQNS   35 (129)
Q Consensus         6 lG~KR~C~~Cg~KFYDlnk-~PiiCP~---CG~e   35 (129)
                      |-.--.||+||+++---.. .-+.||+   |-+.
T Consensus        85 ~~~p~~CPsCgs~l~~~~~~~~~~C~N~~~C~~q  118 (160)
T 2owo_A           85 VVFPTHCPVCGSDVERVEGEAVARCTGGLICGAQ  118 (160)
T ss_dssp             CCCCSBCTTTCCBEEECTTCSCEEECCGGGCHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHH
T ss_conf             2024465555763344478635896698765899


No 102
>>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=49.09  E-value=3.5  Score=21.66  Aligned_cols=31  Identities=13%  Similarity=0.209  Sum_probs=23.8

Q ss_pred             CCCCCCCCEEEE---CCC-CCCCCCCCCCEECHHH
Q ss_conf             117888874421---488-8722778987153233
Q gi|254780459|r   10 RTCPDTGKRFYD---LNK-QVIVSPYTQNSWPLAY   40 (129)
Q Consensus        10 R~C~~Cg~KFYD---lnk-~PiiCP~CG~e~~~~~   40 (129)
                      -.|..||..|--   |.+ .|..|+.||..|.-..
T Consensus        19 ~~C~~C~k~f~~~s~l~~H~~~~c~~C~K~F~~~s   53 (73)
T 2ctu_A           19 QKCSKCGIIFIRRSTLSRRKTPMCEKCRKDSCQEA   53 (73)
T ss_dssp             EECSSSCCEEECCCCCCCSSSCCCHHHHHTCSCCC
T ss_pred             ECCCCCCEEECCCCCCCCCCEEEEECCCCCCCCCC
T ss_conf             03232210000012103321055502377512562


No 103
>>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protein structure initiative, midwest center for structural genomics; 2.00A {Nitrosomonas europaea atcc 19718} (A:1-37)
Probab=48.84  E-value=9.2  Score=19.06  Aligned_cols=29  Identities=14%  Similarity=0.279  Sum_probs=18.7

Q ss_pred             CCCCCCCCCCCEEE-----ECCCCCCCCCCCCCE
Q ss_conf             78311788887442-----148887227789871
Q gi|254780459|r    7 GTKRTCPDTGKRFY-----DLNKQVIVSPYTQNS   35 (129)
Q Consensus         7 G~KR~C~~Cg~KFY-----Dlnk~PiiCP~CG~e   35 (129)
                      |--+-|+.||..-=     .=||--.|||.||+.
T Consensus         1 ~~~kfC~~CG~~v~~~IP~GD~r~R~VC~~Cg~I   34 (37)
T 3cng_A            1 GHXKFCSQCGGEVILRIPEGDTLPRYICPKCHTI   34 (37)
T ss_dssp             --CCBCTTTCCBCEEECCTTCSSCEEEETTTTEE
T ss_pred             CCCEECCCCCCCCCCCCCCCCCEEEEECCCCCCC
T ss_conf             9762882337856135578886037656999970


No 104
>>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=48.17  E-value=9.1  Score=19.09  Aligned_cols=16  Identities=13%  Similarity=0.256  Sum_probs=12.8

Q ss_pred             CCCCCCCCCCCCCEEC
Q ss_conf             4888722778987153
Q gi|254780459|r   22 LNKQVIVSPYTQNSWP   37 (129)
Q Consensus        22 lnk~PiiCP~CG~e~~   37 (129)
                      +.|.-.-||+|+.-|-
T Consensus         5 ~g~RA~KCPyCd~~F~   20 (37)
T 2elp_A            5 SSGRAMKCPYCDFYFM   20 (37)
T ss_dssp             CCCCCEECSSSSCEEC
T ss_pred             CCCCCCCCCCCHHHHH
T ss_conf             6686314873047885


No 105
>>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} (A:)
Probab=47.60  E-value=8.2  Score=19.37  Aligned_cols=33  Identities=21%  Similarity=0.507  Sum_probs=23.5

Q ss_pred             CCCCCCCCCCCEEEECCCCCCCCCCCCCEECHHHHHC
Q ss_conf             7831178888744214888722778987153233101
Q gi|254780459|r    7 GTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEA   43 (129)
Q Consensus         7 G~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~   43 (129)
                      |.=.+||=|..    +-++|+++|.||..|-..-+.+
T Consensus         1 gs~~~C~IC~~----~~~~pv~~~~CgH~fc~~Ci~~   33 (61)
T 2bay_A            1 GSHMLCAISGK----VPRRPVLSPKSRTIFEKSLLEQ   33 (61)
T ss_dssp             ---CCCTTTCS----CCSSEEEETTTTEEEEHHHHHH
T ss_pred             CCEEECCCCCC----HHHHHHCCCCCCCEECHHHHHH
T ss_conf             98658049793----7874111125993853888877


No 106
>>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} (A:)
Probab=47.58  E-value=7.6  Score=19.55  Aligned_cols=31  Identities=13%  Similarity=0.020  Sum_probs=23.1

Q ss_pred             HHHCCCCCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf             2227831178888744214888722778987
Q gi|254780459|r    4 PELGTKRTCPDTGKRFYDLNKQVIVSPYTQN   34 (129)
Q Consensus         4 ~elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~   34 (129)
                      ..+=.+++|+.|.-.=+.-+..+.+||.|+-
T Consensus         6 i~~~~~~~C~~C~GtG~~~~~~~~~C~~C~G   36 (79)
T 1exk_A            6 IRIPTLEECDVCHGSGAKPGTQPQTCPTCHG   36 (79)
T ss_dssp             CCCCCEEECGGGTTTSBCSSSCCEECTTTTT
T ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             9801076889981601189988723898778


No 107
>>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=47.47  E-value=8  Score=19.43  Aligned_cols=14  Identities=36%  Similarity=0.733  Sum_probs=9.7

Q ss_pred             CCCCCCCCCCCEEE
Q ss_conf             78311788887442
Q gi|254780459|r    7 GTKRTCPDTGKRFY   20 (129)
Q Consensus         7 G~KR~C~~Cg~KFY   20 (129)
                      ++-+.|--||+||-
T Consensus         7 ekthlcd~cgkkfk   20 (36)
T 2elr_A            7 GKTHLCDMCGKKFK   20 (36)
T ss_dssp             CSSCBCTTTCCBCS
T ss_pred             CCCCHHHHHHHHHC
T ss_conf             75215876603440


No 108
>>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} (A:)
Probab=47.43  E-value=6.4  Score=20.02  Aligned_cols=29  Identities=10%  Similarity=0.251  Sum_probs=20.3

Q ss_pred             HH-CCCCCCCCCCCEEEECCCCCCCCCCCCCEEC
Q ss_conf             22-7831178888744214888722778987153
Q gi|254780459|r    5 EL-GTKRTCPDTGKRFYDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus         5 el-G~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~   37 (129)
                      +| +....|..|+.-|    +.-+.||-|+.+..
T Consensus        43 ~w~~g~yhC~~C~~~f----~~~a~CPdC~~~Le   72 (101)
T 2jne_A           43 DQDNGHARCRSCGEFI----EMKALCPDCHQPLQ   72 (101)
T ss_dssp             EEETTEEEETTTCCEE----EEEEECTTTCSBCE
T ss_pred             EECCCCEECHHHHHHH----EEEEECCCCCCHHH
T ss_conf             4548988815652112----04776876131899


No 109
>>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A* (A:1-124)
Probab=47.02  E-value=8.6  Score=19.24  Aligned_cols=33  Identities=15%  Similarity=0.111  Sum_probs=26.1

Q ss_pred             CCCCCCCCCEEE--ECCCCCCCCCCCCCEECHHHH
Q ss_conf             311788887442--148887227789871532331
Q gi|254780459|r    9 KRTCPDTGKRFY--DLNKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus         9 KR~C~~Cg~KFY--Dlnk~PiiCP~CG~e~~~~~~   41 (129)
                      .-+||..|..+=  .++..-|+||+.|..|.+..-
T Consensus        46 ~n~CpH~g~~L~~g~~~~~~i~Cp~Hg~~f~~~gg   80 (124)
T 3gke_A           46 LDICPHRFAPLSDGILVNGHLQCPYHGLEFDGGGQ   80 (124)
T ss_dssp             ESSCTTTCCCGGGCEEETTEEECTTTCCEECTTCC
T ss_pred             ECCCCCCCCCCCCCCCCCCEEEECCCCCEEECCCC
T ss_conf             48578999872467210998982798748808997


No 110
>>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} (A:32-61)
Probab=46.73  E-value=6.6  Score=19.95  Aligned_cols=13  Identities=8%  Similarity=0.235  Sum_probs=9.3

Q ss_pred             CCCCCCCCCCCEE
Q ss_conf             8872277898715
Q gi|254780459|r   24 KQVIVSPYTQNSW   36 (129)
Q Consensus        24 k~PiiCP~CG~e~   36 (129)
                      ..|.-|++||.-|
T Consensus         2 ekpf~c~kcgk~y   14 (30)
T 2dlq_A            2 EKPFECPKCGKCY   14 (30)
T ss_dssp             CCSCBCTTTCCBC
T ss_pred             CCCCCCCCCCCCC
T ss_conf             2100111223210


No 111
>>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} (A:1-174)
Probab=46.71  E-value=9.3  Score=19.02  Aligned_cols=33  Identities=24%  Similarity=0.339  Sum_probs=25.7

Q ss_pred             CCCCCCCCCEEEE----CCCCCCCCCCCCCEECHHHH
Q ss_conf             3117888874421----48887227789871532331
Q gi|254780459|r    9 KRTCPDTGKRFYD----LNKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus         9 KR~C~~Cg~KFYD----lnk~PiiCP~CG~e~~~~~~   41 (129)
                      .-+||..|+....    -++.-|+||+.|..|...--
T Consensus        81 ~n~CpH~g~~L~~g~~~~~~~~i~Cp~Hg~~f~~~g~  117 (174)
T 1z01_A           81 KDQCLHRGVRLSEKPTCFTKSTISCWYHGFTFDLETG  117 (174)
T ss_dssp             ESSCTTTCCCGGGSCCCSSTTEEECTTTCEEEETTTC
T ss_pred             ECCCCCCCCCCCCCCCCCCCCEEECCCCCCEEECCCC
T ss_conf             4878899987126755575997973888868966898


No 112
>>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} (A:1-41)
Probab=46.61  E-value=9.5  Score=18.98  Aligned_cols=19  Identities=0%  Similarity=-0.134  Sum_probs=13.8

Q ss_pred             CCCCCCCCCCCCEECHHHH
Q ss_conf             8887227789871532331
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~   41 (129)
                      +-.|-.||.||..|.-...
T Consensus        12 gekpy~C~~C~k~F~~~~~   30 (41)
T 2ct1_A           12 GEKPYECYICHARFTQSGT   30 (41)
T ss_dssp             CCCSEECTTTCCEESCHHH
T ss_pred             CCCCEECCCCCCCCCCHHH
T ss_conf             9889489999973241254


No 113
>>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ protein, ATP-binding, DNA-binding; 4.35A {Sulfolobus solfataricus} (A:106-281)
Probab=46.51  E-value=9.1  Score=19.09  Aligned_cols=26  Identities=4%  Similarity=-0.247  Sum_probs=18.0

Q ss_pred             CCCCCCCCEEEECC----------CCCCCCCCCCCE
Q ss_conf             11788887442148----------887227789871
Q gi|254780459|r   10 RTCPDTGKRFYDLN----------KQVIVSPYTQNS   35 (129)
Q Consensus        10 R~C~~Cg~KFYDln----------k~PiiCP~CG~e   35 (129)
                      -.|..||..||=..          ..|..||.|+.-
T Consensus        31 f~C~~C~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~   66 (176)
T 3f9v_A           31 YKHIHPDCMQEFEWPEDEEMPEVLEMPTICPKCGKP   66 (176)
T ss_dssp             CEEESSSCCCBCCSSCSSCCCSSCCCCSSCTTTCCC
T ss_pred             EEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf             887259970589957860337777888778888888


No 114
>>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=46.40  E-value=9.8  Score=18.89  Aligned_cols=19  Identities=0%  Similarity=-0.202  Sum_probs=13.9

Q ss_pred             CCCCCCCCCCCCEECHHHH
Q ss_conf             8887227789871532331
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~   41 (129)
                      +..|-.||.||..|.-...
T Consensus         6 gekp~~C~~C~k~F~~~s~   24 (36)
T 2elq_A            6 SGKPFKCSLCEYATRSKSN   24 (36)
T ss_dssp             CCCSEECSSSSCEESCHHH
T ss_pred             CCCCEECCCCCCCCCCCCC
T ss_conf             9989876898835557535


No 115
>3h0n_A Protein Of Unknown Function Duf1470 (Yp_510353.1) {Jannaschia Sp. Ccs1} (A:)
Probab=45.75  E-value=7.7  Score=19.53  Aligned_cols=34  Identities=15%  Similarity=0.261  Sum_probs=24.9

Q ss_pred             CCHHHCCCCCC--CCCCCEEEECCC--C-CCCCCCCCCE
Q ss_conf             75222783117--888874421488--8-7227789871
Q gi|254780459|r    2 AKPELGTKRTC--PDTGKRFYDLNK--Q-VIVSPYTQNS   35 (129)
Q Consensus         2 aK~elG~KR~C--~~Cg~KFYDlnk--~-PiiCP~CG~e   35 (129)
                      .-++|+.=|+|  |.|+.-|||.-|  + -==++.||+-
T Consensus       138 ~~~~~~Rlr~C~ap~C~~~F~D~Srn~~RrWCsm~CGNR  176 (188)
T 3h0n_A          138 GHQNVRRFGICNAHRCDRVYFDTSRNGTRQYCSLACQNR  176 (188)
T ss_dssp             HTTCGGGEEECCSTTCCCEEECCSSSCCCCCSSHHHHHH
T ss_pred             CCCCHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHH
T ss_conf             178845631157879756888638668834147113238


No 116
>>2kfq_A FP1; protein, de novo protein; NMR {Synthetic} (A:)
Probab=45.39  E-value=5.7  Score=20.32  Aligned_cols=11  Identities=9%  Similarity=0.138  Sum_probs=6.8

Q ss_pred             CCCCCCCEECH
Q ss_conf             27789871532
Q gi|254780459|r   28 VSPYTQNSWPL   38 (129)
Q Consensus        28 iCP~CG~e~~~   38 (129)
                      .||.|+.-|.-
T Consensus         4 ~C~~C~KrF~R   14 (32)
T 2kfq_A            4 ACPACPKRFMR   14 (32)
T ss_dssp             SSSSSCTTHHH
T ss_pred             CCCCCCCCCCC
T ss_conf             47645553251


No 117
>>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} (B:)
Probab=45.23  E-value=10  Score=18.79  Aligned_cols=32  Identities=3%  Similarity=0.000  Sum_probs=22.2

Q ss_pred             CCCCCCCCCEEEECCCCCCCCCCCCCEECHHHHHCC
Q ss_conf             311788887442148887227789871532331012
Q gi|254780459|r    9 KRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEAP   44 (129)
Q Consensus         9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~~   44 (129)
                      .-.||=|    |++-++|++.|.||+.|-..=+.+.
T Consensus        22 ~~~C~IC----~~~~~~pv~~~~CgH~fC~~Ci~~~   53 (117)
T 1jm7_B           22 LLRCSRC----TNILREPVCLGGCEHIFCSNCVSDC   53 (117)
T ss_dssp             TTSCSSS----CSCCSSCBCCCSSSCCBCTTTGGGG
T ss_pred             CCCCCCC----CCCCCCCEEECCCCCHHHHHHHHHH
T ss_conf             7998889----8300497276899987689999999


No 118
>>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} (C:1-27)
Probab=45.01  E-value=9.2  Score=19.04  Aligned_cols=16  Identities=0%  Similarity=-0.049  Sum_probs=11.9

Q ss_pred             CCCCCCCCCCEECHHH
Q ss_conf             8722778987153233
Q gi|254780459|r   25 QVIVSPYTQNSWPLAY   40 (129)
Q Consensus        25 ~PiiCP~CG~e~~~~~   40 (129)
                      .|-.||.||..|.-..
T Consensus         2 kPy~C~~CgK~Fsr~~   17 (27)
T 1llm_C            2 KPFQCRICMRNFSRSD   17 (27)
T ss_dssp             CCEECTTTCCEESCHH
T ss_pred             CCCCCCCCCCCCCCHH
T ss_conf             4957999886429799


No 119
>>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} (I:54-113)
Probab=44.57  E-value=9.6  Score=18.95  Aligned_cols=12  Identities=8%  Similarity=0.069  Sum_probs=5.2

Q ss_pred             CCCCCCCCCCCC
Q ss_conf             888722778987
Q gi|254780459|r   23 NKQVIVSPYTQN   34 (129)
Q Consensus        23 nk~PiiCP~CG~   34 (129)
                      .|....||+||.
T Consensus        16 ~~~~~~C~~Cg~   27 (60)
T 3h0g_I           16 PRSDKECPRCHQ   27 (60)
T ss_dssp             CBCCSCCSSSCC
T ss_pred             CCCCCCCCCCCC
T ss_conf             603643744899


No 120
>>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} (A:)
Probab=44.07  E-value=10  Score=18.77  Aligned_cols=10  Identities=10%  Similarity=0.208  Sum_probs=5.0

Q ss_pred             CCCCCCCEEC
Q ss_conf             2778987153
Q gi|254780459|r   28 VSPYTQNSWP   37 (129)
Q Consensus        28 iCP~CG~e~~   37 (129)
                      .||.||.-|.
T Consensus         4 ~C~~C~k~F~   13 (29)
T 1rik_A            4 ACPECPKRFM   13 (29)
T ss_dssp             ECSSSSCEES
T ss_pred             CCCCCCCCCC
T ss_conf             3776655321


No 121
>>1v54_F VI, cytochrome C oxidase polypeptide VB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} (F:37-98)
Probab=43.78  E-value=15  Score=17.83  Aligned_cols=26  Identities=15%  Similarity=0.230  Sum_probs=21.0

Q ss_pred             CCCCEEEECCCC-CCCCCCCCCEECHH
Q ss_conf             888744214888-72277898715323
Q gi|254780459|r   14 DTGKRFYDLNKQ-VIVSPYTQNSWPLA   39 (129)
Q Consensus        14 ~Cg~KFYDlnk~-PiiCP~CG~e~~~~   39 (129)
                      +.-..++=|.|. |--||.||.-|.+.
T Consensus        30 ~h~v~W~~l~~g~p~RC~eCG~~fkL~   56 (62)
T 1v54_F           30 NSTVIWFWLHKGEAQRCPSCGTHYKLV   56 (62)
T ss_dssp             CSCCEEEEEESSSCEECTTTCCEEEEE
T ss_pred             CCEEEEEEEECCCCCCCCCCCCEEEEE
T ss_conf             753388997579975268788489986


No 122
>>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, signaling protein; 2.90A {Chlorobaculum tepidum} (A:375-535)
Probab=43.66  E-value=7.4  Score=19.64  Aligned_cols=34  Identities=9%  Similarity=0.108  Sum_probs=27.5

Q ss_pred             CCCCCCCCCEEE---------ECCCCCCCCCCCCCEECHHHHH
Q ss_conf             311788887442---------1488872277898715323310
Q gi|254780459|r    9 KRTCPDTGKRFY---------DLNKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus         9 KR~C~~Cg~KFY---------Dlnk~PiiCP~CG~e~~~~~~~   42 (129)
                      +-.||.|..+..         ..++.-++||.|+..+.+..+.
T Consensus       106 ~VpCp~c~~~~~~~~~l~~~e~~g~~~i~C~~~~~~v~i~~l~  148 (161)
T 3dpu_A          106 FIPLPGHPDELVEYKELLGLEKMGRDRYVSGKLEKVFSVSKML  148 (161)
T ss_dssp             EEEETTEEEEEEEHHHHHHHHHTTCCEEEETTTTEEEEHHHHH
T ss_pred             EEECCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCEEEHHHHH
T ss_conf             8628898667868888888987899777579889577899964


No 123
>>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (1:)
Probab=43.34  E-value=15  Score=17.75  Aligned_cols=23  Identities=22%  Similarity=0.395  Sum_probs=20.1

Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf             1178888744214888722778987
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQVIVSPYTQN   34 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~PiiCP~CG~   34 (129)
                      -.|.-||.+=|-+.|.  .|.+||.
T Consensus        18 ~lCrRCG~~syH~qK~--~CasCGy   40 (57)
T 1vq8_1           18 TKCRRCGEKSYHTKKK--VCSSCGF   40 (57)
T ss_dssp             EECTTTCSEEEETTTT--EETTTCT
T ss_pred             CHHHCCCCHHHHHCCC--CCCCCCC
T ss_conf             5431658244433144--0144688


No 124
>>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} (A:72-100)
Probab=43.14  E-value=11  Score=18.63  Aligned_cols=19  Identities=5%  Similarity=-0.066  Sum_probs=13.7

Q ss_pred             CCCCCCCCCCCEECHHHHH
Q ss_conf             8872277898715323310
Q gi|254780459|r   24 KQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        24 k~PiiCP~CG~e~~~~~~~   42 (129)
                      -.|-.|+.||..|.-...+
T Consensus         2 EkPy~C~~Cgk~F~~~s~L   20 (29)
T 2ebt_A            2 AKPFQCGVCNRSFSRSDHL   20 (29)
T ss_dssp             CCSCBCSSSCCBCSSHHHH
T ss_pred             CCCCCCCCCCCCCCCHHHH
T ss_conf             6665347788603776899


No 125
>>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} (I:54-122)
Probab=42.85  E-value=11  Score=18.63  Aligned_cols=31  Identities=19%  Similarity=0.471  Sum_probs=18.6

Q ss_pred             CCCCCCCCCCE---EEECCCC----C----CCCCCCCCEECH
Q ss_conf             83117888874---4214888----7----227789871532
Q gi|254780459|r    8 TKRTCPDTGKR---FYDLNKQ----V----IVSPYTQNSWPL   38 (129)
Q Consensus         8 ~KR~C~~Cg~K---FYDlnk~----P----iiCP~CG~e~~~   38 (129)
                      ++..||.||-+   ||=+--.    |    .+|.+||..|..
T Consensus        18 t~~~Cp~Cg~~ea~f~q~QtRsaDE~mT~Fy~C~~C~~~W~e   59 (69)
T 1twf_I           18 SDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTS   59 (69)
T ss_dssp             CCCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEEC
T ss_pred             CCCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCCCCEECC
T ss_conf             466786679987116874446678897399996999999077


No 126
>>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=42.75  E-value=11  Score=18.48  Aligned_cols=20  Identities=5%  Similarity=0.162  Sum_probs=14.3

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +..|-.|+.||..|.-...+
T Consensus         6 geKpy~C~~Cgk~F~~~s~L   25 (36)
T 2els_A            6 SGKIFTCEYCNKVFKFKHSL   25 (36)
T ss_dssp             CCCCEECTTTCCEESSHHHH
T ss_pred             CCCEEEEHHHHHHHHHHHHH
T ss_conf             77457515654577577777


No 127
>>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=42.74  E-value=12  Score=18.34  Aligned_cols=17  Identities=0%  Similarity=-0.097  Sum_probs=13.7

Q ss_pred             CCCCCCCCCCCCEECHH
Q ss_conf             88872277898715323
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLA   39 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~   39 (129)
                      +..|-.|+.||..|.-.
T Consensus         8 geKpy~C~~Cgk~F~~~   24 (42)
T 2en2_A            8 GEKPYKCETCGARFVQV   24 (42)
T ss_dssp             SSCSEECTTTCCEESSH
T ss_pred             CCCCEECCCCCCCCCCH
T ss_conf             99897789889842788


No 128
>>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* (A:601-677)
Probab=42.59  E-value=20  Score=17.05  Aligned_cols=29  Identities=14%  Similarity=0.170  Sum_probs=21.5

Q ss_pred             CCCC---CCEEEECCCCC---CCCCCCC-CEECHHH
Q ss_conf             7888---87442148887---2277898-7153233
Q gi|254780459|r   12 CPDT---GKRFYDLNKQV---IVSPYTQ-NSWPLAY   40 (129)
Q Consensus        12 C~~C---g~KFYDlnk~P---iiCP~CG-~e~~~~~   40 (129)
                      ||.|   |...++|.--|   +.||.|+ +-|.++.
T Consensus        41 Cp~C~G~G~i~~~m~f~~~v~~~C~~C~GkRf~~e~   76 (77)
T 2vf7_A           41 CEHCQGEGWVMVELLFLPSVYAPCPVCHGTRYNAET   76 (77)
T ss_dssp             CTTTTTCSEEEETTCSSSCEEEECTTTTTCCBCTTG
T ss_pred             CEECCCCCCCCHHHHHHHHCCCCHHHHHCCHHHHHH
T ss_conf             100014662000222212201106665060002453


No 129
>>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} (A:)
Probab=42.57  E-value=6.9  Score=19.83  Aligned_cols=13  Identities=0%  Similarity=-0.151  Sum_probs=6.9

Q ss_pred             CCCCCCCCCEECH
Q ss_conf             7227789871532
Q gi|254780459|r   26 VIVSPYTQNSWPL   38 (129)
Q Consensus        26 PiiCP~CG~e~~~   38 (129)
                      -.+|+-||--|.-
T Consensus         8 ~f~C~pCGIrFsS   20 (36)
T 1fv5_A            8 RFMCLPCGIAFSS   20 (36)
T ss_dssp             CCEETTTTEECSC
T ss_pred             EEEEECCCEEECC
T ss_conf             2677623110158


No 130
>>2odx_A Cytochrome C oxidase polypeptide IV; all beta-protein, metallo-protein, oxidoreductase; NMR {Saccharomyces cerevisiae} (A:)
Probab=42.50  E-value=15  Score=17.83  Aligned_cols=27  Identities=7%  Similarity=-0.095  Sum_probs=22.3

Q ss_pred             CCCCEEEECCCC-CCCCCCCCCEECHHH
Q ss_conf             888744214888-722778987153233
Q gi|254780459|r   14 DTGKRFYDLNKQ-VIVSPYTQNSWPLAY   40 (129)
Q Consensus        14 ~Cg~KFYDlnk~-PiiCP~CG~e~~~~~   40 (129)
                      +.-..++=|.|. |--||.||.-|.+..
T Consensus        43 sh~v~W~~l~~g~p~RC~eCG~~fkL~~   70 (80)
T 2odx_A           43 SHTIMWLKPTVNEVARCWECGSVYKLNP   70 (80)
T ss_dssp             CSCCEEECCCTTCEEECSSSCCEEEECC
T ss_pred             CCEEEEEEECCCCCCCCCCCCCEEEEEE
T ss_conf             6366899971798556677885999988


No 131
>>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} (A:1-47)
Probab=41.19  E-value=13  Score=18.21  Aligned_cols=20  Identities=10%  Similarity=0.255  Sum_probs=14.8

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      ...|-.|+.||..|.-...+
T Consensus        14 gekpy~C~~Cgk~F~~~s~L   33 (47)
T 2ee8_A           14 TKKEFICKFCGRHFTKSYNL   33 (47)
T ss_dssp             CCCCCBCSSSCCBCSSHHHH
T ss_pred             CCCCCCCCCCCCEECCHHHC
T ss_conf             99691999999980878667


No 132
>>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:42-72)
Probab=41.17  E-value=2.9  Score=22.14  Aligned_cols=15  Identities=13%  Similarity=0.202  Sum_probs=12.4

Q ss_pred             CCCCCCCCCCCCCEE
Q ss_conf             488872277898715
Q gi|254780459|r   22 LNKQVIVSPYTQNSW   36 (129)
Q Consensus        22 lnk~PiiCP~CG~e~   36 (129)
                      -.|+-|.||.||..+
T Consensus        11 terddilcp~cgkdi   25 (31)
T 1x4l_A           11 TERDDILCPDCGKDI   25 (31)
T ss_dssp             ECSSSEECHHHHHTC
T ss_pred             EECCEEECHHHCCCC
T ss_conf             789999783460176


No 133
>>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens} (A:)
Probab=40.65  E-value=21  Score=16.82  Aligned_cols=26  Identities=31%  Similarity=0.547  Sum_probs=19.3

Q ss_pred             CCCCCCCCEEE----ECC--CCCCCCCCCCCEE
Q ss_conf             11788887442----148--8872277898715
Q gi|254780459|r   10 RTCPDTGKRFY----DLN--KQVIVSPYTQNSW   36 (129)
Q Consensus        10 R~C~~Cg~KFY----Dln--k~PiiCP~CG~e~   36 (129)
                      +-|| ||-+|.    +|.  -.-+.||+|.--+
T Consensus        24 ypCr-CGd~F~it~~dLe~ge~vv~C~sCSL~I   55 (89)
T 2jr7_A           24 YPCP-CGDNFSITKEDLENGEDVATCPSCSLII   55 (89)
T ss_dssp             EECT-TSSEEEEEHHHHHHTCCEEECTTTCCEE
T ss_pred             ECCC-CCCEEEECHHHHHCCCCEEECCCCCCEE
T ss_conf             5789-9995898899996899199699986389


No 134
>>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=40.36  E-value=14  Score=18.03  Aligned_cols=19  Identities=5%  Similarity=-0.057  Sum_probs=13.9

Q ss_pred             CCCCCCCCCCCCEECHHHH
Q ss_conf             8887227789871532331
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~   41 (129)
                      +..|-.|+.||..|.-...
T Consensus         6 geKpy~C~~Cgk~F~~~s~   24 (36)
T 2elt_A            6 SGKPYKCPQCSYASAIKAN   24 (36)
T ss_dssp             CCCSEECSSSSCEESSHHH
T ss_pred             CCCCEECCCCCCCCCCHHH
T ss_conf             9989873799987168678


No 135
>>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} (D:400-454)
Probab=39.89  E-value=15  Score=17.83  Aligned_cols=15  Identities=13%  Similarity=0.124  Sum_probs=11.6

Q ss_pred             CC-CCCCCCCEECHHH
Q ss_conf             72-2778987153233
Q gi|254780459|r   26 VI-VSPYTQNSWPLAY   40 (129)
Q Consensus        26 Pi-iCP~CG~e~~~~~   40 (129)
                      || +||=||-.+.+..
T Consensus         1 p~~idpVCgmpv~~~~   16 (55)
T 1mty_D            1 PIYIDRVSQVPFCPSL   16 (55)
T ss_dssp             CCEECTTTCCEECTTT
T ss_pred             CCCCCCCCCCCCCCCC
T ss_conf             7232201577611257


No 136
>>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} (A:)
Probab=39.74  E-value=13  Score=18.08  Aligned_cols=20  Identities=10%  Similarity=0.044  Sum_probs=14.3

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      ...|-.|+.||..|.-...+
T Consensus         8 gekpy~C~~Cgk~F~~~s~L   27 (37)
T 1p7a_A            8 GIKPFQCPDCDRSFSRSDHL   27 (37)
T ss_dssp             CSSSBCCTTTCCCBSSHHHH
T ss_pred             CCCCEECCCCCCEECCHHHH
T ss_conf             88894789999991778888


No 137
>>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens} (A:1-33)
Probab=39.70  E-value=11  Score=18.55  Aligned_cols=10  Identities=30%  Similarity=0.710  Sum_probs=7.2

Q ss_pred             CCCCCCCCEE
Q ss_conf             1178888744
Q gi|254780459|r   10 RTCPDTGKRF   19 (129)
Q Consensus        10 R~C~~Cg~KF   19 (129)
                      .+|+.||+||
T Consensus        22 iicLEDGkk~   31 (33)
T 2jsp_A           22 IVCLECGGSF   31 (33)
T ss_dssp             EECTBTCCEE
T ss_pred             EEEECCCCCH
T ss_conf             6871378306


No 138
>>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=39.63  E-value=17  Score=17.45  Aligned_cols=27  Identities=15%  Similarity=0.180  Sum_probs=14.5

Q ss_pred             CCCCCCCCEEEEC---------CCCCCCCCC--CCCEE
Q ss_conf             1178888744214---------888722778--98715
Q gi|254780459|r   10 RTCPDTGKRFYDL---------NKQVIVSPY--TQNSW   36 (129)
Q Consensus        10 R~C~~Cg~KFYDl---------nk~PiiCP~--CG~e~   36 (129)
                      ..|+.|+.+|.=-         .+.|+.||.  |+..+
T Consensus        11 ~~C~~C~~~~~~~~~~~H~~~C~~~~v~C~~~~c~~~i   48 (66)
T 2eod_A           11 QPCTYCTKEFVFDTIQSHQYQCPRLPVACPNQCGVGTV   48 (66)
T ss_dssp             EECSSSCCEEEHHHHHHHHHHCSSSEEECTTCCSCCEE
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCC
T ss_conf             62999985100868989987589867679888784416


No 139
>>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} (A:12-82)
Probab=39.55  E-value=16  Score=17.52  Aligned_cols=31  Identities=10%  Similarity=0.133  Sum_probs=25.1

Q ss_pred             CCCCCCCCCE--EEECCCCCCCCCCCCCEECHH
Q ss_conf             3117888874--421488872277898715323
Q gi|254780459|r    9 KRTCPDTGKR--FYDLNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus         9 KR~C~~Cg~K--FYDlnk~PiiCP~CG~e~~~~   39 (129)
                      .-+||-.|..  .+.+...-|+||+.|..|++.
T Consensus        28 ~~~CpH~g~~l~~g~~~~~~i~Cp~Hg~~Fdl~   60 (71)
T 3dqy_A           28 QDTCTHGDWALSDGYLDGDIVECTLHFGKFXVR   60 (71)
T ss_dssp             ESBCSSSSCBGGGSEEETTEEECTTTCCEEETT
T ss_pred             ECCCCCEEEEEEEEECCCCEEEEECCCCEEECC
T ss_conf             773123358731214059999974588789889


No 140
>>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=39.34  E-value=14  Score=18.01  Aligned_cols=19  Identities=0%  Similarity=-0.134  Sum_probs=14.4

Q ss_pred             CCCCCCCCCCCCEECHHHH
Q ss_conf             8887227789871532331
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~   41 (129)
                      ...|-.|+.||..|.-...
T Consensus         8 gekpy~C~~Cgk~F~~~s~   26 (42)
T 2eos_A            8 GEKPYPCEICGTRFRHLQT   26 (42)
T ss_dssp             SSCCBCCSSSCCCBSSHHH
T ss_pred             CCCCEECCCCCCCCCCHHH
T ss_conf             9989868988981478788


No 141
>>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.10A {Pseudomonas aeruginosa PAO1} (A:1-26,A:182-309)
Probab=39.14  E-value=15  Score=17.83  Aligned_cols=23  Identities=13%  Similarity=0.063  Sum_probs=9.3

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCEE
Q ss_conf             17888874421488872277898715
Q gi|254780459|r   11 TCPDTGKRFYDLNKQVIVSPYTQNSW   36 (129)
Q Consensus        11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~   36 (129)
                      .|.-||+...   -.-+.||+||..-
T Consensus        55 ~CslC~teW~---~~R~~Cp~CG~~~   77 (154)
T 2fiy_A           55 SCSLCACEWH---YVRIKCSHCEESK   77 (154)
T ss_dssp             EETTTCCEEE---CCTTSCSSSCCCS
T ss_pred             ECCCCCCCCC---EECCCCCCCCCCC
T ss_conf             7799888552---3277684999999


No 142
>>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} (A:)
Probab=39.12  E-value=11  Score=18.54  Aligned_cols=26  Identities=35%  Similarity=0.563  Sum_probs=18.3

Q ss_pred             CCCCCCCCEEE----ECCCC--CCCCCCCCCEE
Q ss_conf             11788887442----14888--72277898715
Q gi|254780459|r   10 RTCPDTGKRFY----DLNKQ--VIVSPYTQNSW   36 (129)
Q Consensus        10 R~C~~Cg~KFY----Dlnk~--PiiCP~CG~e~   36 (129)
                      +-|| ||-+|-    +|..-  -+-||+|.--+
T Consensus        24 ypCr-CGd~F~it~~dLe~ge~v~~C~sCSL~i   55 (83)
T 1yop_A           24 YPCP-CGDRFQIYLDDMFEGEKVAVCPSCSLMI   55 (83)
T ss_dssp             EEET-TTEEEEEEHHHHHTTCCEEECSSSCCEE
T ss_pred             ECCC-CCCCEECCHHHHHCCCCEEECCCCCCEE
T ss_conf             6378-8984032899986899488189986389


No 143
>>2i13_A AART; DNA binding, zinc finger, DNA binding protein/DNA complex; 1.96A {Mus musculus} (A:130-157)
Probab=38.98  E-value=14  Score=17.94  Aligned_cols=18  Identities=11%  Similarity=0.019  Sum_probs=12.8

Q ss_pred             CCCCCCCCCCCEECHHHH
Q ss_conf             887227789871532331
Q gi|254780459|r   24 KQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        24 k~PiiCP~CG~e~~~~~~   41 (129)
                      -.|-.|+.||..|.-...
T Consensus         2 EKPy~C~~Cgk~F~~~s~   19 (28)
T 2i13_A            2 EKPYKCPECGKSFSREDN   19 (28)
T ss_dssp             CCCEECTTTCCEESCHHH
T ss_pred             CCCEECCCCCCCCCCCCC
T ss_conf             877005764442311122


No 144
>>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} (A:1-42)
Probab=38.67  E-value=15  Score=17.81  Aligned_cols=20  Identities=5%  Similarity=-0.105  Sum_probs=14.5

Q ss_pred             CCCCCCCCCCCCCEECHHHH
Q ss_conf             48887227789871532331
Q gi|254780459|r   22 LNKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        22 lnk~PiiCP~CG~e~~~~~~   41 (129)
                      .+..|-.|+.||..|.-...
T Consensus        14 tgeKpy~C~~Cgk~F~~~s~   33 (42)
T 2cot_A           14 RERRRYKCDECGKSFSHSSD   33 (42)
T ss_dssp             CCSCSSBCSSSCCBCSCHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCC
T ss_conf             89978088989979733454


No 145
>>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A (A:)
Probab=38.55  E-value=9.7  Score=18.91  Aligned_cols=19  Identities=26%  Similarity=0.517  Sum_probs=16.0

Q ss_pred             HHCCCCCCCCCCCEEEECC
Q ss_conf             2278311788887442148
Q gi|254780459|r    5 ELGTKRTCPDTGKRFYDLN   23 (129)
Q Consensus         5 elG~KR~C~~Cg~KFYDln   23 (129)
                      .-|+|+.|--|-+||-|..
T Consensus         5 ssgikqhcrfckkkysdvk   23 (37)
T 2elu_A            5 SSGIKQHCRFCKKKYSDVK   23 (37)
T ss_dssp             CCCCCCEETTTTEECSSHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
T ss_conf             1668999999998878899


No 146
>>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) sequence RTPA; anti-trap, tryptophan RNA-binding attenuation protein; 2.06A {Bacillus licheniformis} PDB: 3ld0_A (A:)
Probab=38.40  E-value=14  Score=17.92  Aligned_cols=23  Identities=17%  Similarity=0.377  Sum_probs=16.1

Q ss_pred             CCCCCCCCCEEEECCC-CCCCCCCCCCE
Q ss_conf             3117888874421488-87227789871
Q gi|254780459|r    9 KRTCPDTGKRFYDLNK-QVIVSPYTQNS   35 (129)
Q Consensus         9 KR~C~~Cg~KFYDlnk-~PiiCP~CG~e   35 (129)
                      ..+||+|..-    ++ .|--||+|+.-
T Consensus         9 e~tcp~c~~~----g~~e~~pcp~c~~k   32 (53)
T 3lcz_A            9 ETTCPNCNGS----GREEPEPCPKCLGK   32 (53)
T ss_dssp             EEECTTTTTS----CEETTEECTTTTTS
T ss_pred             CCCCCCCCCC----CCCCCCCCCCCCCC
T ss_conf             0028676675----76279838634575


No 147
>>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* (A:64-90)
Probab=38.12  E-value=13  Score=18.09  Aligned_cols=17  Identities=6%  Similarity=-0.009  Sum_probs=12.3

Q ss_pred             CCCCCCCCCCEECHHHH
Q ss_conf             87227789871532331
Q gi|254780459|r   25 QVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        25 ~PiiCP~CG~e~~~~~~   41 (129)
                      .|-.|+.||..|.-...
T Consensus         2 KPy~C~eCgK~F~~~s~   18 (27)
T 2jp9_A            2 KPFQCKTCQRKFSRSDH   18 (27)
T ss_dssp             CCEECTTTCCEESCHHH
T ss_pred             CCCCCCCCCCCCHHHHH
T ss_conf             76523234211103443


No 148
>>2i13_A AART; DNA binding, zinc finger, DNA binding protein/DNA complex; 1.96A {Mus musculus} (A:103-129)
Probab=36.93  E-value=15  Score=17.81  Aligned_cols=16  Identities=13%  Similarity=0.098  Sum_probs=11.3

Q ss_pred             CCCCCCCCCCEECHHH
Q ss_conf             8722778987153233
Q gi|254780459|r   25 QVIVSPYTQNSWPLAY   40 (129)
Q Consensus        25 ~PiiCP~CG~e~~~~~   40 (129)
                      .|-.|+.||..|.-..
T Consensus         2 KPy~C~~CgK~F~~~s   17 (27)
T 2i13_A            2 KPYACPECGKSFSQLA   17 (27)
T ss_dssp             CCEECTTTCCEESSHH
T ss_pred             CCCCCCCCCCCCCCHH
T ss_conf             6803897887222034


No 149
>>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} (A:1-67)
Probab=36.81  E-value=12  Score=18.39  Aligned_cols=29  Identities=17%  Similarity=0.362  Sum_probs=21.3

Q ss_pred             CCCCCCCEEEEC---------CCCCCCCCCCCCEE-CHH
Q ss_conf             178888744214---------88872277898715-323
Q gi|254780459|r   11 TCPDTGKRFYDL---------NKQVIVSPYTQNSW-PLA   39 (129)
Q Consensus        11 ~C~~Cg~KFYDl---------nk~PiiCP~CG~e~-~~~   39 (129)
                      .|--|.+|+--|         -|.--+||||+--| .|+
T Consensus        18 ~CrLCnaklssl~Eqg~HER~CrnatvCPYCsLRF~sp~   56 (67)
T 1wjp_A           18 QCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPE   56 (67)
T ss_dssp             BCTTTCCBCSSHHHHHHHHHHHHHSBCCTTTCCCBSSHH
T ss_pred             CCCCCCCCCCCHHHHHCCCCCCCCCCEECCCCCCCCCHH
T ss_conf             897860526688885012126788838558988766788


No 150
>>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} (A:35-62)
Probab=36.71  E-value=15  Score=17.72  Aligned_cols=14  Identities=0%  Similarity=-0.038  Sum_probs=10.8

Q ss_pred             CCCCCCCCCCEECH
Q ss_conf             87227789871532
Q gi|254780459|r   25 QVIVSPYTQNSWPL   38 (129)
Q Consensus        25 ~PiiCP~CG~e~~~   38 (129)
                      .|-.|+.||..|.-
T Consensus         2 kP~~C~~C~k~F~r   15 (28)
T 2csh_A            2 RPYGCGVCGKKFKM   15 (28)
T ss_dssp             CSEECTTTSCEESS
T ss_pred             CCCCCCCCCCCCCC
T ss_conf             00122223222110


No 151
>>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} (A:)
Probab=36.68  E-value=13  Score=18.09  Aligned_cols=22  Identities=9%  Similarity=0.110  Sum_probs=17.4

Q ss_pred             CCCCCCCCCEEEECCCCCCCCCCCCCE
Q ss_conf             311788887442148887227789871
Q gi|254780459|r    9 KRTCPDTGKRFYDLNKQVIVSPYTQNS   35 (129)
Q Consensus         9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e   35 (129)
                      =|.|..|+.     =++.=.||.||.+
T Consensus        11 ~rAC~~C~~-----i~~~~~CpnC~s~   32 (69)
T 1ryq_A           11 EKACRHCHY-----ITSEDRCPVCGSR   32 (69)
T ss_dssp             CEEETTTCB-----EESSSSCTTTCCC
T ss_pred             CHHHHHCCC-----CCCCCCCCCCCCC
T ss_conf             335752987-----6688879897498


No 152
>>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} (A:1-147)
Probab=36.65  E-value=18  Score=17.28  Aligned_cols=32  Identities=19%  Similarity=0.226  Sum_probs=23.2

Q ss_pred             CCCCCCCCCEEEE----CCCCCCCCCCCCCEECHHH
Q ss_conf             3117888874421----4888722778987153233
Q gi|254780459|r    9 KRTCPDTGKRFYD----LNKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus         9 KR~C~~Cg~KFYD----lnk~PiiCP~CG~e~~~~~   40 (129)
                      -..||..|...-.    -+..-|+||+.|..|++..
T Consensus        66 ~n~CpH~g~~L~~g~~~~~~~~i~Cp~H~~~f~l~t  101 (147)
T 2de6_A           66 KDRCLHRGVQLSVKVECKTKSTITCWYHAWTYRWED  101 (147)
T ss_dssp             ESSCTTTCCCGGGGCCCCSTTEEECTTTCEEEETTT
T ss_pred             ECCCCCCCCEEECCCCCCCCCEEECCCCCEEEECCC
T ss_conf             598889998855673227799678797885995354


No 153
>>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), zinc finger, DNA-binding protein; HET: DNA; 1.60A {Mus musculus} (A:59-90)
Probab=36.39  E-value=17  Score=17.44  Aligned_cols=18  Identities=0%  Similarity=-0.077  Sum_probs=13.4

Q ss_pred             CCCCCCCCCCCEECHHHH
Q ss_conf             887227789871532331
Q gi|254780459|r   24 KQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        24 k~PiiCP~CG~e~~~~~~   41 (129)
                      ..|-.|+.||..|.-...
T Consensus         2 eKPy~C~~Cgk~F~~~s~   19 (32)
T 1a1h_A            2 EKPFACDICGRKFARSDE   19 (32)
T ss_dssp             CCCEECTTTCCEESSHHH
T ss_pred             CCCCEECCCCCCCCCHHH
T ss_conf             777131326885078789


No 154
>>2i13_A AART; DNA binding, zinc finger, DNA binding protein/DNA complex; 1.96A {Mus musculus} (A:1-73)
Probab=36.31  E-value=17  Score=17.43  Aligned_cols=31  Identities=23%  Similarity=0.352  Sum_probs=20.0

Q ss_pred             CCCCCCCEEEEC-----------CCCCCCCCCCCCEECHHHH
Q ss_conf             178888744214-----------8887227789871532331
Q gi|254780459|r   11 TCPDTGKRFYDL-----------NKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        11 ~C~~Cg~KFYDl-----------nk~PiiCP~CG~e~~~~~~   41 (129)
                      .|..||+-|.-.           +..|-.|..||..|.....
T Consensus        23 ~c~~c~k~F~~~s~l~~hq~~H~gek~y~C~eCgk~F~~~s~   64 (73)
T 2i13_A           23 ACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKD   64 (73)
T ss_dssp             --------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHH
T ss_pred             ECCCCCCEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
T ss_conf             289999884888998888762102332211232323588889


No 155
>>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} (A:)
Probab=36.10  E-value=14  Score=17.99  Aligned_cols=26  Identities=31%  Similarity=0.514  Sum_probs=18.3

Q ss_pred             CCCCCCCCEEE----ECCCC--CCCCCCCCCEE
Q ss_conf             11788887442----14888--72277898715
Q gi|254780459|r   10 RTCPDTGKRFY----DLNKQ--VIVSPYTQNSW   36 (129)
Q Consensus        10 R~C~~Cg~KFY----Dlnk~--PiiCP~CG~e~   36 (129)
                      +-|| ||-+|-    +|-.-  -+.||+|.--+
T Consensus        31 ypCr-CGd~f~it~~~Le~ge~v~~C~sCSL~i   62 (83)
T 1wge_A           31 YPCP-CGDNFAITKEDLENGEDVATCPSCSLII   62 (83)
T ss_dssp             ECCS-SSSCEEEEHHHHHTTCCEEECTTTCCEE
T ss_pred             ECCC-CCCEEEECHHHHHCCCCEEECCCCCEEE
T ss_conf             5788-9994898999985899589589984289


No 156
>>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} (A:)
Probab=36.02  E-value=24  Score=16.49  Aligned_cols=22  Identities=23%  Similarity=0.294  Sum_probs=17.6

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf             178888744214888722778987
Q gi|254780459|r   11 TCPDTGKRFYDLNKQVIVSPYTQN   34 (129)
Q Consensus        11 ~C~~Cg~KFYDlnk~PiiCP~CG~   34 (129)
                      .|..|-+-.-++.|  .-||+||.
T Consensus        17 rC~aCf~~t~~~~k--~FCp~CGn   38 (79)
T 2con_A           17 RCHGCFKTTSDMNR--VFCGHCGN   38 (79)
T ss_dssp             ECSSSCCEESCSSC--CSCSSSCC
T ss_pred             EEEECCCCCCCCCC--CCCCCCCC
T ss_conf             64233558688766--62743698


No 157
>>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=35.92  E-value=19  Score=17.08  Aligned_cols=12  Identities=0%  Similarity=-0.036  Sum_probs=6.1

Q ss_pred             CCCCCCCCCEEC
Q ss_conf             722778987153
Q gi|254780459|r   26 VIVSPYTQNSWP   37 (129)
Q Consensus        26 PiiCP~CG~e~~   37 (129)
                      |-.|+.||..|.
T Consensus        25 p~~C~~C~k~F~   36 (95)
T 2ej4_A           25 SRPKKSCDRTFS   36 (95)
T ss_dssp             SSSCCCCCCCCS
T ss_pred             CCCCCCCCCEEC
T ss_conf             976899999838


No 158
>>3dpt_A ROCO, RAB family protein; alpha-beta-protein, signaling protein; 2.90A {Chlorobaculum tepidum} (A:172-332)
Probab=35.79  E-value=12  Score=18.44  Aligned_cols=34  Identities=9%  Similarity=0.109  Sum_probs=26.8

Q ss_pred             CCCCCCCCCEEE---------ECCCCCCCCCCCCCEECHHHHH
Q ss_conf             311788887442---------1488872277898715323310
Q gi|254780459|r    9 KRTCPDTGKRFY---------DLNKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus         9 KR~C~~Cg~KFY---------Dlnk~PiiCP~CG~e~~~~~~~   42 (129)
                      +-.||.|..+.-         .+++.-++||.|+..+.+..+.
T Consensus       106 ~vpCp~c~~~~~~~p~l~~~e~~g~~~~~C~~~~~~v~i~~l~  148 (161)
T 3dpt_A          106 FIPLPGHPDELVEYKELLGLEKMGRDEYVSGKLEKVFSVSKML  148 (161)
T ss_dssp             EEEETTEEEEEEEHHHHHHHHHTTCCEEEETTTTEEEEHHHHH
T ss_pred             EEECCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCEEEHHHHH
T ss_conf             9989799887736999999997899588479889476889963


No 159
>>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=35.42  E-value=18  Score=17.29  Aligned_cols=20  Identities=0%  Similarity=-0.172  Sum_probs=14.9

Q ss_pred             CCCCCCCCCCCCCEECHHHH
Q ss_conf             48887227789871532331
Q gi|254780459|r   22 LNKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        22 lnk~PiiCP~CG~e~~~~~~   41 (129)
                      .+..|-.|+.||..|.-..-
T Consensus         8 tgekp~~C~~C~k~F~~~s~   27 (46)
T 2enc_A            8 SGEKPFKCEECGKGFYTNSQ   27 (46)
T ss_dssp             CCCCSEECSSSCCEESSHHH
T ss_pred             CCCCCEECCCCCEEECCHHH
T ss_conf             89889815986877034176


No 160
>>2i13_A AART; DNA binding, zinc finger, DNA binding protein/DNA complex; 1.96A {Mus musculus} (A:158-190)
Probab=35.26  E-value=18  Score=17.27  Aligned_cols=18  Identities=11%  Similarity=0.023  Sum_probs=13.2

Q ss_pred             CCCCCCCCCCCEECHHHH
Q ss_conf             887227789871532331
Q gi|254780459|r   24 KQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        24 k~PiiCP~CG~e~~~~~~   41 (129)
                      -.|-.|+.||..|.-...
T Consensus         2 eKpy~C~~Cgk~F~~~s~   19 (33)
T 2i13_A            2 EKPYKCPECGKSFSRRDA   19 (33)
T ss_dssp             CCCEECTTTCCEESSHHH
T ss_pred             CCCEECCCCCCEECCHHH
T ss_conf             848079999997499999


No 161
>>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=35.16  E-value=18  Score=17.25  Aligned_cols=20  Identities=15%  Similarity=0.165  Sum_probs=15.1

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +..|-.|+.||..|.-...+
T Consensus         9 gekp~~C~~Cgk~F~~~~~L   28 (46)
T 2eme_A            9 GEKPYVCDYCGKAFGLSAEL   28 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHH
T ss_pred             CCCCEECCCCCCEECCHHHH
T ss_conf             96897899999851788897


No 162
>>2ba1_A Archaeal exosome RNA binding protein CSL4; RNAse PH, RNA degradation, exoribonuclease, RNA binding, S1 domain, Zn-ribbon, phosphorolytic; 2.70A {Archaeoglobus fulgidus} (A:146-179)
Probab=34.95  E-value=14  Score=17.90  Aligned_cols=11  Identities=9%  Similarity=0.241  Sum_probs=7.9

Q ss_pred             CCCCCCCCCCE
Q ss_conf             87227789871
Q gi|254780459|r   25 QVIVSPYTQNS   35 (129)
Q Consensus        25 ~PiiCP~CG~e   35 (129)
                      .-++||.||..
T Consensus        10 ~kL~CP~Cgrv   20 (34)
T 2ba1_A           10 DILKCPECGRV   20 (34)
T ss_dssp             TEEECTTTCCE
T ss_pred             CEEECCCCCCE
T ss_conf             98999999985


No 163
>>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix coturnix japonica} (A:1-40)
Probab=34.90  E-value=14  Score=18.00  Aligned_cols=21  Identities=24%  Similarity=0.635  Sum_probs=16.2

Q ss_pred             HHHCCCCCCCCCCCEEEECCC
Q ss_conf             222783117888874421488
Q gi|254780459|r    4 PELGTKRTCPDTGKRFYDLNK   24 (129)
Q Consensus         4 ~elG~KR~C~~Cg~KFYDlnk   24 (129)
                      |-+|+.-.|+.||+.-|-+-|
T Consensus         2 ~~~g~~~~C~~C~k~VY~~E~   22 (40)
T 1a7i_A            2 PNWGGGNKCGACGRTVYHAEE   22 (40)
T ss_dssp             ------CBCSSSCCBCSSTTE
T ss_pred             CCCCCCHHHHHCCCEECCCEE
T ss_conf             478867125538876157138


No 164
>>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:1-41)
Probab=34.72  E-value=19  Score=17.12  Aligned_cols=19  Identities=0%  Similarity=0.050  Sum_probs=13.6

Q ss_pred             CCCCCCCCCCCCEECHHHH
Q ss_conf             8887227789871532331
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~   41 (129)
                      +-.|-.|+.||..|.-...
T Consensus        12 gekpy~C~~C~k~F~~~~~   30 (41)
T 1x6h_A           12 GEKPYACSHCDKTFRQKQL   30 (41)
T ss_dssp             CCCCEECSSSSCEESSHHH
T ss_pred             CCCCEECCCCCCCCCCCCC
T ss_conf             9678548988983120212


No 165
>>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} (A:)
Probab=34.48  E-value=14  Score=17.92  Aligned_cols=31  Identities=10%  Similarity=-0.010  Sum_probs=21.8

Q ss_pred             CCCCCCCCCEEEEC----CCCCCCCCCCCCEECHH
Q ss_conf             31178888744214----88872277898715323
Q gi|254780459|r    9 KRTCPDTGKRFYDL----NKQVIVSPYTQNSWPLA   39 (129)
Q Consensus         9 KR~C~~Cg~KFYDl----nk~PiiCP~CG~e~~~~   39 (129)
                      +-+|+.|...+--.    ......||.||....|.
T Consensus       113 ~~~C~~c~~~~~~~~~~~~~~~p~C~~Cgg~~~p~  147 (235)
T 1s5p_A          113 KVRCSQSGQVLDWTGDVTPEDKCHCCQFPAPLRPH  147 (235)
T ss_dssp             EEEETTTCCEEECCSCCCSSCCC-------CEEEE
T ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
T ss_conf             69879999855533223555666665556205588


No 166
>>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} (A:1-31)
Probab=34.46  E-value=18  Score=17.31  Aligned_cols=22  Identities=9%  Similarity=0.194  Sum_probs=16.5

Q ss_pred             CCCCCCCCCCCCEECHHHHHCC
Q ss_conf             8887227789871532331012
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFEAP   44 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~~~   44 (129)
                      .+.|+.||-|-..|--..+++.
T Consensus         4 ~~~~v~cptchk~flskyylkv   25 (31)
T 2dlq_A            4 GSSGVECPTCHKKFLSKYYLKV   25 (31)
T ss_dssp             CCSSCCCTTTCCCCSSHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCHHHCCC
T ss_conf             8968799999989797766881


No 167
>>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} (A:63-110)
Probab=34.26  E-value=16  Score=17.54  Aligned_cols=12  Identities=0%  Similarity=-0.023  Sum_probs=7.0

Q ss_pred             CCCCCCCCCCEE
Q ss_conf             872277898715
Q gi|254780459|r   25 QVIVSPYTQNSW   36 (129)
Q Consensus        25 ~PiiCP~CG~e~   36 (129)
                      .|--|-.||.-|
T Consensus         2 KPYeC~~CgKkf   13 (48)
T 2csh_A            2 KPYECNICAKRF   13 (48)
T ss_dssp             CCEECSSSCCEE
T ss_pred             EEECCCCCCCEE
T ss_conf             120124477402


No 168
>>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} (C:28-88)
Probab=33.80  E-value=19  Score=17.09  Aligned_cols=19  Identities=0%  Similarity=-0.066  Sum_probs=13.4

Q ss_pred             CCCCCCCCCCCEECHHHHH
Q ss_conf             8872277898715323310
Q gi|254780459|r   24 KQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        24 k~PiiCP~CG~e~~~~~~~   42 (129)
                      -.|-.|+.||..|.-...+
T Consensus         2 ekpf~C~~C~k~F~~~~~L   20 (61)
T 1llm_C            2 EKPFACDICGRKFARSDER   20 (61)
T ss_dssp             CCCEECTTTCCEESSHHHH
T ss_pred             CCCCCCCCCCCCCCCHHHH
T ss_conf             9887565254334788999


No 169
>>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=33.78  E-value=21  Score=16.82  Aligned_cols=20  Identities=5%  Similarity=-0.024  Sum_probs=14.8

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +..|-.|+.||..|.-...+
T Consensus         9 gekpy~C~~Cgk~F~~~s~L   28 (46)
T 2emy_A            9 GENPYECHECGKAFSRKYQL   28 (46)
T ss_dssp             SSCCEECSSSCCEESSHHHH
T ss_pred             CCCCCCCCCCCEECCCCCCC
T ss_conf             98880989899423105543


No 170
>>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} (A:)
Probab=33.58  E-value=21  Score=16.85  Aligned_cols=28  Identities=21%  Similarity=0.234  Sum_probs=16.8

Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCEECHHHH
Q ss_conf             11788887442148887227789871532331
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~   41 (129)
                      -.|+-|    |++-+.|+++|.||..|--.=+
T Consensus        16 ~~C~IC----~~~~~~p~~~~~C~H~fc~~Ci   43 (74)
T 2yur_A           16 LLCLIC----KDIMTDAVVIPCCGNSYCDECI   43 (74)
T ss_dssp             GSCSSS----CCCCTTCEECSSSCCEECTTHH
T ss_pred             CCCCCC----CHHHHCCEEECCCCCCCCHHHH
T ss_conf             999678----9076095082778984499999


No 171
>>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A (A:142-227)
Probab=33.35  E-value=16  Score=17.55  Aligned_cols=15  Identities=0%  Similarity=-0.009  Sum_probs=7.0

Q ss_pred             CCCCCCCCEECHHHH
Q ss_conf             227789871532331
Q gi|254780459|r   27 IVSPYTQNSWPLAYF   41 (129)
Q Consensus        27 iiCP~CG~e~~~~~~   41 (129)
                      +-|+.||.-|-...+
T Consensus         8 v~~~~t~~ryRAD~l   22 (86)
T 2zt5_A            8 VKDVKNGECFRADHL   22 (86)
T ss_dssp             EEBSSSCCEEEHHHH
T ss_pred             HHCCCCCCCCCCCCC
T ss_conf             760535600165211


No 172
>>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=33.15  E-value=22  Score=16.72  Aligned_cols=13  Identities=0%  Similarity=0.061  Sum_probs=6.0

Q ss_pred             CCCCCCCCCCCEE
Q ss_conf             8872277898715
Q gi|254780459|r   24 KQVIVSPYTQNSW   36 (129)
Q Consensus        24 k~PiiCP~CG~e~   36 (129)
                      ..|-.|+.||..|
T Consensus        10 ekpy~C~~C~K~F   22 (54)
T 2eps_A           10 GKPYICQSCGKGF   22 (54)
T ss_dssp             SCCEECSSSCCEE
T ss_pred             CCCCCCCCCCCCC
T ss_conf             9783689989897


No 173
>>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida} (A:14-84)
Probab=33.15  E-value=21  Score=16.82  Aligned_cols=31  Identities=19%  Similarity=0.356  Sum_probs=24.8

Q ss_pred             CCCCCCCCCEEE--ECCCCCCCCCCCCCEECHH
Q ss_conf             311788887442--1488872277898715323
Q gi|254780459|r    9 KRTCPDTGKRFY--DLNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus         9 KR~C~~Cg~KFY--Dlnk~PiiCP~CG~e~~~~   39 (129)
                      --+||-.|.-+.  .++..-|+||+-|..|++.
T Consensus        28 ~n~CpH~g~~L~~g~~~~~~i~Cp~H~~~fdl~   60 (71)
T 2qpz_A           28 DNLCTHGSARMSDGYLEGREIECPLHQGRFDVC   60 (71)
T ss_dssp             ESBCSSSSCBGGGSEEETTEEECTTTTCEEETT
T ss_pred             EEECCCCCCCCEECCCCCCEEEECCCCCEEECC
T ss_conf             777796343410123789999861689899689


No 174
>>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} (C:1-162)
Probab=32.99  E-value=23  Score=16.62  Aligned_cols=35  Identities=17%  Similarity=0.299  Sum_probs=26.1

Q ss_pred             HHHCCCCCCCC--CCCEEEECCCCCCCCCCCCCEECH
Q ss_conf             22278311788--887442148887227789871532
Q gi|254780459|r    4 PELGTKRTCPD--TGKRFYDLNKQVIVSPYTQNSWPL   38 (129)
Q Consensus         4 ~elG~KR~C~~--Cg~KFYDlnk~PiiCP~CG~e~~~   38 (129)
                      +++..=..||+  |+.|-.+-+-.--.||+|+..++.
T Consensus        38 ~~~~~Y~aC~~~~C~kkv~~~~~~~~~C~~C~~~~~~   74 (162)
T 1l1o_C           38 KENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPN   74 (162)
T ss_dssp             CSTTEEEBCCSTTCCCBCEEETTTEEEETTTTEEESS
T ss_pred             CCCEEECCCCCHHCCCCCCCCCCCCEECCCCCCCCCC
T ss_conf             7985996789232598334278981885899996876


No 175
>>3jyw_Y 60S ribosomal protein L37(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} (Y:)
Probab=32.90  E-value=28  Score=16.11  Aligned_cols=25  Identities=16%  Similarity=0.401  Sum_probs=20.7

Q ss_pred             CCCCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf             831178888744214888722778987
Q gi|254780459|r    8 TKRTCPDTGKRFYDLNKQVIVSPYTQN   34 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~   34 (129)
                      +--.|.-||.+=|-+.|.  .|-+||.
T Consensus        14 tH~~CrrCGr~syH~qK~--~Ca~CGy   38 (52)
T 3jyw_Y           14 SHTLCNRCGRRSFHVQKK--TCSSCGY   38 (52)
T ss_dssp             CEECCSSSCCCCEETTTC--CCSSSCS
T ss_pred             CCCHHHCCCCHHHEECCC--CCCCCCC
T ss_conf             416320648411010445--0233789


No 176
>>1ejp_A Syndecan-4; symmetric-parallel-interwinded dimer, signaling protein; NMR {Synthetic} (A:)
Probab=32.79  E-value=19  Score=17.12  Aligned_cols=17  Identities=35%  Similarity=0.419  Sum_probs=11.2

Q ss_pred             EEECCCCCCCCCCCCCE
Q ss_conf             42148887227789871
Q gi|254780459|r   19 FYDLNKQVIVSPYTQNS   35 (129)
Q Consensus        19 FYDlnk~PiiCP~CG~e   35 (129)
                      -|||+|.||---.--++
T Consensus         9 sydlgkkpiy~kapt~e   25 (28)
T 1ejp_A            9 SYDLGKKPIYKKAPTNE   25 (28)
T ss_dssp             CCCCCSCCCCCCCCCCC
T ss_pred             CCCCCCCCCCCCCCCCH
T ss_conf             52236674102276311


No 177
>>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), zinc finger, DNA-binding protein; HET: DNA; 1.60A {Mus musculus} (A:31-58)
Probab=32.61  E-value=20  Score=16.94  Aligned_cols=18  Identities=0%  Similarity=-0.018  Sum_probs=12.9

Q ss_pred             CCCCCCCCCCCEECHHHH
Q ss_conf             887227789871532331
Q gi|254780459|r   24 KQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        24 k~PiiCP~CG~e~~~~~~   41 (129)
                      -.|-.|+.||..|.-...
T Consensus         2 EKPy~C~~Cgk~F~~~s~   19 (28)
T 1a1h_A            2 QKPFQCRICMRNFSRSDH   19 (28)
T ss_dssp             CCCEECTTTCCEESCHHH
T ss_pred             CCCCCCCCCCCCCCCCCC
T ss_conf             421001335664111331


No 178
>>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} (G:46-73)
Probab=32.61  E-value=20  Score=16.94  Aligned_cols=18  Identities=0%  Similarity=-0.018  Sum_probs=12.9

Q ss_pred             CCCCCCCCCCCEECHHHH
Q ss_conf             887227789871532331
Q gi|254780459|r   24 KQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        24 k~PiiCP~CG~e~~~~~~   41 (129)
                      -.|-.|+.||..|.-...
T Consensus         2 EKPy~C~~Cgk~F~~~s~   19 (28)
T 1f2i_G            2 QKPFQCRICMRNFSRSDH   19 (28)
T ss_dssp             CCCEECTTTCCEESCHHH
T ss_pred             CCCEECCCCCCCCCCHHH
T ss_conf             818179989887388889


No 179
>>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} (B:58-102)
Probab=32.40  E-value=16  Score=17.61  Aligned_cols=25  Identities=16%  Similarity=0.170  Sum_probs=16.6

Q ss_pred             CCCCCCEEEECCCCCCCC--------CCCCCEE
Q ss_conf             788887442148887227--------7898715
Q gi|254780459|r   12 CPDTGKRFYDLNKQVIVS--------PYTQNSW   36 (129)
Q Consensus        12 C~~Cg~KFYDlnk~PiiC--------P~CG~e~   36 (129)
                      |.-||..|==|.-.+++|        -+||-++
T Consensus         1 C~LCG~~fg~lg~~~v~C~DCkk~VCtKCgVet   33 (45)
T 1zbd_B            1 CILCGEQLGXLGSASVVCEDCKKNVCTKCGVET   33 (45)
T ss_dssp             CSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCC
T ss_conf             955891002889999998688933018998875


No 180
>>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:1-39)
Probab=32.19  E-value=22  Score=16.74  Aligned_cols=18  Identities=0%  Similarity=-0.103  Sum_probs=13.3

Q ss_pred             CCCCCCCCCCCCEECHHH
Q ss_conf             888722778987153233
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~   40 (129)
                      ...|-.|..||..|.-..
T Consensus        11 gekpy~C~~Cgk~F~~~s   28 (39)
T 1x6e_A           11 GEKPYGCVECGKAFSRSS   28 (39)
T ss_dssp             TCCCEECSSSCCEESSHH
T ss_pred             CCCCCCCCCCCCCCCCCC
T ss_conf             986827897898044253


No 181
>>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} (A:)
Probab=31.96  E-value=25  Score=16.44  Aligned_cols=20  Identities=5%  Similarity=-0.054  Sum_probs=14.9

Q ss_pred             CCCCCCCCCCCCCEECHHHH
Q ss_conf             48887227789871532331
Q gi|254780459|r   22 LNKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        22 lnk~PiiCP~CG~e~~~~~~   41 (129)
                      .+..|-.|+.||..|.-...
T Consensus         8 tgekp~~C~~Cgk~F~~~s~   27 (46)
T 2el4_A            8 TGVKPYGCSQCAKTFSLKSQ   27 (46)
T ss_dssp             CCCCSEECSSSSCEESSHHH
T ss_pred             CCCCCEECCCCCEECCCHHH
T ss_conf             89888576999965274256


No 182
>>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens} (A:)
Probab=31.93  E-value=22  Score=16.77  Aligned_cols=19  Identities=5%  Similarity=-0.046  Sum_probs=13.1

Q ss_pred             CCCCCCCC--CCCCEECHHHH
Q ss_conf             88872277--89871532331
Q gi|254780459|r   23 NKQVIVSP--YTQNSWPLAYF   41 (129)
Q Consensus        23 nk~PiiCP--~CG~e~~~~~~   41 (129)
                      +..|-.|+  .||..|.-..-
T Consensus         5 GekPy~C~~~~CgK~F~~~s~   25 (37)
T 1va1_A            5 KKKQHICHIQGCGKVYGKTSH   25 (37)
T ss_dssp             SCCCEECCSTTCCCEESCHHH
T ss_pred             CCCCCCCCCCCCCCEECCHHH
T ss_conf             987849929898984497456


No 183
>>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} (A:1-38)
Probab=31.90  E-value=18  Score=17.27  Aligned_cols=20  Identities=0%  Similarity=-0.252  Sum_probs=14.9

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +..|-.|+.||..|.-...+
T Consensus         5 geKpy~C~~Cgk~F~~~s~L   24 (38)
T 2dmd_A            5 SSGPHKCEVCGKCFSRKDKL   24 (38)
T ss_dssp             CCCCCCBTTTTBCCCCHHHH
T ss_pred             CCCCEECCCCCCCCCCHHHC
T ss_conf             99398689999980855550


No 184
>>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} (A:)
Probab=31.82  E-value=18  Score=17.34  Aligned_cols=12  Identities=8%  Similarity=0.144  Sum_probs=7.5

Q ss_pred             CCCCCCCEECHH
Q ss_conf             277898715323
Q gi|254780459|r   28 VSPYTQNSWPLA   39 (129)
Q Consensus        28 iCP~CG~e~~~~   39 (129)
                      .|+.||..|.-.
T Consensus         4 ~C~~C~k~F~~~   15 (33)
T 1rim_A            4 ACPECPKRFMRS   15 (33)
T ss_dssp             CCSSSCCCCSSH
T ss_pred             CCCCCCCCCCHH
T ss_conf             687777742637


No 185
>>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} (A:)
Probab=31.74  E-value=17  Score=17.43  Aligned_cols=11  Identities=9%  Similarity=0.138  Sum_probs=7.9

Q ss_pred             CCCCCCCEECH
Q ss_conf             27789871532
Q gi|254780459|r   28 VSPYTQNSWPL   38 (129)
Q Consensus        28 iCP~CG~e~~~   38 (129)
                      .|+.||..|.-
T Consensus         4 ~C~~Cgk~F~r   14 (29)
T 1ard_A            4 VCEVCTRAFAR   14 (29)
T ss_dssp             BCTTTCCBCSS
T ss_pred             CCCCCCCCCCC
T ss_conf             99899899887


No 186
>>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} (A:1-117)
Probab=31.51  E-value=25  Score=16.37  Aligned_cols=10  Identities=10%  Similarity=0.149  Sum_probs=4.0

Q ss_pred             CCCCCCCEEE
Q ss_conf             1788887442
Q gi|254780459|r   11 TCPDTGKRFY   20 (129)
Q Consensus        11 ~C~~Cg~KFY   20 (129)
                      .|+.||..|-
T Consensus        27 ~C~~Cgk~F~   36 (117)
T 2rpc_A           27 PKKSCDRTFS   36 (117)
T ss_dssp             SCCCCCCCBS
T ss_pred             CCCCCCCCCC
T ss_conf             7888887219


No 187
>>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} (A:)
Probab=31.43  E-value=21  Score=16.86  Aligned_cols=19  Identities=0%  Similarity=-0.122  Sum_probs=14.2

Q ss_pred             CCCCCCCCCCCCEECHHHH
Q ss_conf             8887227789871532331
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~   41 (129)
                      +..|-.|+.||..|.-...
T Consensus         9 gekpy~C~~Cgk~F~~~s~   27 (46)
T 2ely_A            9 GEKPFKCVECGKGFSRRSA   27 (46)
T ss_dssp             CCCSBCCSSSCCCBSSTTH
T ss_pred             CCCCEECCCCCCCCCCHHH
T ss_conf             9689289999983563888


No 188
>>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} (A:73-125)
Probab=31.05  E-value=28  Score=16.06  Aligned_cols=24  Identities=17%  Similarity=-0.007  Sum_probs=17.4

Q ss_pred             CCCCCEEEECCCCCCCCCCCCCEEC
Q ss_conf             8888744214888722778987153
Q gi|254780459|r   13 PDTGKRFYDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus        13 ~~Cg~KFYDlnk~PiiCP~CG~e~~   37 (129)
                      ..|+++|.=|+| .-.|..||..|=
T Consensus         1 m~C~~~F~~~~r-khhCr~CG~v~C   24 (53)
T 1joc_A            1 MACGKGFSVTVR-RHHCRQCGNIFC   24 (53)
T ss_dssp             TTTCCBCCSSSC-CEECTTTCCEEC
T ss_pred             CCCCHHHHCCCC-CCCCCCCCCEEC
T ss_conf             370935660377-856422796059


No 189
>>2yww_A Aspartate carbamoyltransferase regulatory chain; ATP complex, structural genomics, NPPSFA; HET: ATP; 2.00A {Methanocaldococcus jannaschii} (A:98-149)
Probab=31.01  E-value=18  Score=17.24  Aligned_cols=23  Identities=13%  Similarity=0.040  Sum_probs=19.7

Q ss_pred             CCEEEECCCCCCC--CCCCCCEECH
Q ss_conf             8744214888722--7789871532
Q gi|254780459|r   16 GKRFYDLNKQVIV--SPYTQNSWPL   38 (129)
Q Consensus        16 g~KFYDlnk~Pii--CP~CG~e~~~   38 (129)
                      .++||=.++.|++  |=||+..|.-
T Consensus        24 ~~~F~~~~~~~~~lrC~YCe~~~~~   48 (52)
T 2yww_A           24 RGKFKIESKNPLKIRCYYCEKFLNE   48 (52)
T ss_dssp             CCEEEEEEETTEEEEETTTCCBCSS
T ss_pred             CCEEEEECCCCCEEEEECCCCCCHH
T ss_conf             8438996089989980789989112


No 190
>>3jq1_A SUSD superfamily protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482} (A:421-461)
Probab=30.89  E-value=4.8  Score=20.81  Aligned_cols=10  Identities=60%  Similarity=1.208  Sum_probs=7.5

Q ss_pred             CCEEEECCCC
Q ss_conf             8744214888
Q gi|254780459|r   16 GKRFYDLNKQ   25 (129)
Q Consensus        16 g~KFYDlnk~   25 (129)
                      |-|||||.|-
T Consensus         1 gerfydlrrw   10 (41)
T 3jq1_A            1 GERFYDLRRW   10 (41)
T ss_dssp             TCHHHHHHHH
T ss_pred             CCHHHHHHCC
T ss_conf             7589999713


No 191
>>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=30.87  E-value=20  Score=16.95  Aligned_cols=23  Identities=13%  Similarity=0.135  Sum_probs=15.6

Q ss_pred             CCCCCCCCCCEEEECCCCCCCCCCCCCEE
Q ss_conf             83117888874421488872277898715
Q gi|254780459|r    8 TKRTCPDTGKRFYDLNKQVIVSPYTQNSW   36 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~   36 (129)
                      ..++|--||.      ..-..||.||+-|
T Consensus        11 ~~~~C~vC~~------~~kY~Cp~C~~~y   33 (56)
T 2yqq_A           11 STVVCVICLE------KPKYRCPACRVPY   33 (56)
T ss_dssp             CCCCCTTTCS------CCSEECTTTCCEE
T ss_pred             CCCEECCCCC------CCCCCCCCCCCCC
T ss_conf             9847057989------9965789989964


No 192
>>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} (A:)
Probab=30.77  E-value=20  Score=17.06  Aligned_cols=11  Identities=9%  Similarity=0.159  Sum_probs=7.3

Q ss_pred             CCCCCCCEECH
Q ss_conf             27789871532
Q gi|254780459|r   28 VSPYTQNSWPL   38 (129)
Q Consensus        28 iCP~CG~e~~~   38 (129)
                      -||.||..|.-
T Consensus        22 ~c~~CgK~F~~   32 (47)
T 1ncs_A           22 LFPGCTKTFKR   32 (47)
T ss_dssp             CCTTCCCEECS
T ss_pred             CCCCCCCCCCC
T ss_conf             88899984576


No 193
>>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A (A:)
Probab=30.60  E-value=18  Score=17.28  Aligned_cols=11  Identities=27%  Similarity=0.353  Sum_probs=7.0

Q ss_pred             CCCCCCCCEEC
Q ss_conf             22778987153
Q gi|254780459|r   27 IVSPYTQNSWP   37 (129)
Q Consensus        27 iiCP~CG~e~~   37 (129)
                      -.||+|+..|+
T Consensus         4 ~~CPKC~~~~P   14 (28)
T 2jvx_A            4 FCCPKCQYQAP   14 (28)
T ss_dssp             EECTTSSCEES
T ss_pred             CCCCCCCCCCC
T ss_conf             33762012489


No 194
>>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} (A:)
Probab=30.58  E-value=39  Score=15.19  Aligned_cols=25  Identities=12%  Similarity=0.145  Sum_probs=18.9

Q ss_pred             CCCCCCCCCCEEEECCCCCCCCCCCCCE
Q ss_conf             8311788887442148887227789871
Q gi|254780459|r    8 TKRTCPDTGKRFYDLNKQVIVSPYTQNS   35 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~e   35 (129)
                      .|.||-.|++++.   -.-.-|=+||..
T Consensus        18 ~k~ICrkC~Ar~p---~~A~~CRKCg~t   42 (56)
T 2ayj_A           18 LKKVCRKCGALNP---IRATKCRRCHST   42 (56)
T ss_dssp             CCEEETTTCCEEC---TTCSSCTTTCCC
T ss_pred             HHHHHHHCCCCCC---CCCCCCCCCCCC
T ss_conf             1598865036698---555635657998


No 195
>>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=30.31  E-value=24  Score=16.46  Aligned_cols=20  Identities=0%  Similarity=-0.069  Sum_probs=14.7

Q ss_pred             CCCCCCCCCCCCCEECHHHH
Q ss_conf             48887227789871532331
Q gi|254780459|r   22 LNKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        22 lnk~PiiCP~CG~e~~~~~~   41 (129)
                      .+..|-.|+.||..|.-...
T Consensus         8 tgekp~~C~~Cgk~F~~~s~   27 (46)
T 2em2_A            8 SGEKPFKCKECGKAFRQNIH   27 (46)
T ss_dssp             CCCCSEECSSSCCEESSHHH
T ss_pred             CCCCCEECCCCCCCCCCHHH
T ss_conf             89979688999998588899


No 196
>>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=30.14  E-value=25  Score=16.41  Aligned_cols=20  Identities=5%  Similarity=-0.067  Sum_probs=14.7

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +..|-.|+.||..|.-...+
T Consensus         9 gekp~~C~~C~k~F~~~s~L   28 (46)
T 2em5_A            9 STKSHQCHECGRGFTLKSHL   28 (46)
T ss_dssp             CSCSEECSSSCCEESSHHHH
T ss_pred             CCCCEECCCCCCCCCCHHHH
T ss_conf             99645849998888875681


No 197
>>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} (A:)
Probab=30.13  E-value=26  Score=16.33  Aligned_cols=26  Identities=15%  Similarity=0.277  Sum_probs=18.2

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCEEC
Q ss_conf             178888744214888722778987153
Q gi|254780459|r   11 TCPDTGKRFYDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus        11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~   37 (129)
                      .||.||+.. -+++.=+.||+|+.-..
T Consensus         4 ~Cp~c~~~l-~~~~~~~~~~~~~~~~~   29 (269)
T 1p91_A            4 SCPLCHQPL-SREKNSYICPQRHQFDX   29 (269)
T ss_dssp             BCTTTCCBC-EEETTEEECTTCCEEEB
T ss_pred             ECCCCCHHH-HCCCCEEEECCCCCCCC
T ss_conf             488998044-16798799389963165


No 198
>>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A (A:)
Probab=29.90  E-value=26  Score=16.31  Aligned_cols=18  Identities=6%  Similarity=-0.058  Sum_probs=13.5

Q ss_pred             CCCCCCCCCCCCEECHHH
Q ss_conf             888722778987153233
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~   40 (129)
                      +..|-.|+.||..|.-..
T Consensus         8 gekpy~C~~Cgk~F~~~s   25 (42)
T 2epc_A            8 GETPYLCGQCGKSFTQRG   25 (42)
T ss_dssp             SSCCEECSSSCCEESSHH
T ss_pred             CCCCEEECCCCCCCCCHH
T ss_conf             998957489996334356


No 199
>>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=29.55  E-value=23  Score=16.68  Aligned_cols=19  Identities=0%  Similarity=-0.102  Sum_probs=14.2

Q ss_pred             CCCCCCCCCCCCEECHHHH
Q ss_conf             8887227789871532331
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~   41 (129)
                      +..|-.|+.||..|.-...
T Consensus         9 gekp~~C~~Cgk~F~~~s~   27 (46)
T 2emz_A            9 GERPFKCNECGKGFGRRSH   27 (46)
T ss_dssp             CCCSCCCSSSCCCCSSHHH
T ss_pred             CCCCEECCCCCCCCCCHHH
T ss_conf             9888178989942432477


No 200
>>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=29.54  E-value=27  Score=16.19  Aligned_cols=19  Identities=0%  Similarity=-0.104  Sum_probs=14.1

Q ss_pred             CCCCCCCCCCCCEECHHHH
Q ss_conf             8887227789871532331
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~   41 (129)
                      +..|-.|+.||..|.-...
T Consensus         9 gekpy~C~~Cgk~F~~~s~   27 (46)
T 2ytp_A            9 GERHYECSECGKAFARKST   27 (46)
T ss_dssp             CCCCEECSSSCCEESSHHH
T ss_pred             CCCCEECCCCCCCCCCHHH
T ss_conf             9889588999983273889


No 201
>>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=29.47  E-value=20  Score=17.01  Aligned_cols=20  Identities=5%  Similarity=0.001  Sum_probs=14.9

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +..|-.|+.||..|.-...+
T Consensus         9 gekpy~C~~Cgk~F~~~~~l   28 (46)
T 2eoz_A            9 GEKPYSCNVCGKAFVLSAHL   28 (46)
T ss_dssp             SCCSEEETTTTEEESSHHHH
T ss_pred             CCCCEECCCCCCEECCHHHH
T ss_conf             98883779999462337889


No 202
>>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} (C:31-58)
Probab=29.47  E-value=20  Score=16.94  Aligned_cols=16  Identities=6%  Similarity=-0.176  Sum_probs=9.2

Q ss_pred             CCCCCCCCEECHHHHH
Q ss_conf             2277898715323310
Q gi|254780459|r   27 IVSPYTQNSWPLAYFE   42 (129)
Q Consensus        27 iiCP~CG~e~~~~~~~   42 (129)
                      -+|-.||..|...+.+
T Consensus         5 hvcaecgkaf~esskl   20 (28)
T 1ubd_C            5 HVCAECGKAFVESSKL   20 (28)
T ss_dssp             EECTTTCCEESSHHHH
T ss_pred             CCCCCCCCCCCCCCCC
T ss_conf             2215544322111221


No 203
>>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} (A:43-77)
Probab=29.39  E-value=26  Score=16.28  Aligned_cols=18  Identities=0%  Similarity=-0.138  Sum_probs=13.1

Q ss_pred             CCCCCCCCCCCEECHHHH
Q ss_conf             887227789871532331
Q gi|254780459|r   24 KQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        24 k~PiiCP~CG~e~~~~~~   41 (129)
                      -.|-.|+.||..|.-...
T Consensus         2 EKp~~C~~Cgk~F~~~s~   19 (35)
T 2cot_A            2 EKPYKCDECGKAFIQRSH   19 (35)
T ss_dssp             SCSEECSSSCCEESSHHH
T ss_pred             CCCCCCCCCCCCCCCHHH
T ss_conf             111123546750157899


No 204
>>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=29.23  E-value=40  Score=15.16  Aligned_cols=34  Identities=9%  Similarity=-0.007  Sum_probs=23.0

Q ss_pred             HHCCCCCCCCCCCEEEECCCCCCCCCCCCCEECHHHHH
Q ss_conf             22783117888874421488872277898715323310
Q gi|254780459|r    5 ELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus         5 elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~   42 (129)
                      .+.....|+-|-..|    +.|++++.||+.|--.=+.
T Consensus        11 ~~~~~~~C~IC~~~~----~~~v~~~~CgH~fc~~Ci~   44 (72)
T 2djb_A           11 ELTPYILCSICKGYL----IDATTITECLHTFCKSCIV   44 (72)
T ss_dssp             CCCGGGSCTTTSSCC----SSCEECSSSCCEECHHHHH
T ss_pred             HCCCCCEEEECCCCC----CCCEEECCCCCEECHHHHH
T ss_conf             689999916159511----0983978999757629999


No 205
>>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, ATP-binding cassette, cytoplasm; HET: ADP; 3.20A {Geobacillus stearothermophilus 10} (A:144-290)
Probab=29.22  E-value=20  Score=16.96  Aligned_cols=13  Identities=23%  Similarity=0.082  Sum_probs=9.3

Q ss_pred             CCCCCCCCCEECH
Q ss_conf             7227789871532
Q gi|254780459|r   26 VIVSPYTQNSWPL   38 (129)
Q Consensus        26 PiiCP~CG~e~~~   38 (129)
                      -..||.||..|+.
T Consensus       124 ~~~C~~~g~~~~e  136 (147)
T 2r6f_A          124 KHACPYCGFSIGE  136 (147)
T ss_dssp             SEECTTTCCEEEC
T ss_pred             CCCCCCCCCCHHH
T ss_conf             0367667860211


No 206
>>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:34-78)
Probab=29.19  E-value=22  Score=16.77  Aligned_cols=10  Identities=0%  Similarity=0.172  Sum_probs=5.9

Q ss_pred             CCCCCCCEEC
Q ss_conf             2778987153
Q gi|254780459|r   28 VSPYTQNSWP   37 (129)
Q Consensus        28 iCP~CG~e~~   37 (129)
                      .|-.||.-|.
T Consensus         7 ~Ce~CgKrFE   16 (45)
T 2d9h_A            7 PCEFCGKRFE   16 (45)
T ss_dssp             ECTTTCCEES
T ss_pred             CCCCCCCCCC
T ss_conf             1003432434


No 207
>>3i1n_1 50S ribosomal protein L33; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_1 1vs6_1 3i1p_1 3i1r_1 3i1t_1 3i20_1 3i22_1 2qam_1* 1p85_1 1p86_1 2awb_1 2aw4_1 2i2v_1 2j28_1 2i2t_1* 2qao_1* 2qba_1* 2qbc_1* 2qbe_1 2qbg_1 ... (1:)
Probab=29.07  E-value=32  Score=15.73  Aligned_cols=35  Identities=23%  Similarity=0.216  Sum_probs=25.2

Q ss_pred             CCCHH-HCCCCCCCCCCCEEEECCCCCC----------CCCCCCCE
Q ss_conf             97522-2783117888874421488872----------27789871
Q gi|254780459|r    1 MAKPE-LGTKRTCPDTGKRFYDLNKQVI----------VSPYTQNS   35 (129)
Q Consensus         1 MaK~e-lG~KR~C~~Cg~KFYDlnk~Pi----------iCP~CG~e   35 (129)
                      |||.- ...+-.|..||.+||=-.|.+-          -||.|+.-
T Consensus         1 Mak~~r~~i~L~ct~c~~~nY~T~KN~~~~~~rLel~Kycp~~~kh   46 (55)
T 3i1n_1            1 MAKGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQH   46 (55)
T ss_dssp             ---CCCBCCCEEESSSSCCEECCCBCSSSCCSCCCEEEEETTTTEE
T ss_pred             CCCCCCCEEEEEEECCCCEEEEECCCCCCCCHHEEEECCCCCCCCE
T ss_conf             9976551699998288881797647888994144897418787856


No 208
>>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} (A:131-166)
Probab=29.06  E-value=26  Score=16.34  Aligned_cols=20  Identities=10%  Similarity=0.054  Sum_probs=14.3

Q ss_pred             CCCCCCCCC--CCCEECHHHHH
Q ss_conf             888722778--98715323310
Q gi|254780459|r   23 NKQVIVSPY--TQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~--CG~e~~~~~~~   42 (129)
                      |-.|-.|+.  ||..|.-..-+
T Consensus         1 nEkpf~C~~~gC~k~F~~~~~L   22 (36)
T 1tf6_A            1 QQLPYECPHEGCDKRFSLPSRL   22 (36)
T ss_dssp             SSCSSBCCSSSCCCBCSSHHHH
T ss_pred             CCCCCCCCCCCCCCCEECCCCC
T ss_conf             4576311234456410115573


No 209
>>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=28.63  E-value=25  Score=16.37  Aligned_cols=28  Identities=4%  Similarity=0.076  Sum_probs=14.6

Q ss_pred             CCCCCCCEEEEC-------CCCCCCCCCCCCEECH
Q ss_conf             178888744214-------8887227789871532
Q gi|254780459|r   11 TCPDTGKRFYDL-------NKQVIVSPYTQNSWPL   38 (129)
Q Consensus        11 ~C~~Cg~KFYDl-------nk~PiiCP~CG~e~~~   38 (129)
                      .|..|+-+|==-       .+....||.|.+.|..
T Consensus        36 ~~~~C~h~fh~~Cl~~W~~~~~~~~CP~Cr~~~~~   70 (80)
T 2d8s_A           36 HCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM   70 (80)
T ss_dssp             SCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred             CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEE
T ss_conf             45885200869799999802797868688982176


No 210
>>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (Z:)
Probab=28.54  E-value=24  Score=16.53  Aligned_cols=29  Identities=17%  Similarity=0.579  Sum_probs=21.1

Q ss_pred             CCCCCCCCCCCEEEECCCC---CCCCCCCCCEEC
Q ss_conf             7831178888744214888---722778987153
Q gi|254780459|r    7 GTKRTCPDTGKRFYDLNKQ---VIVSPYTQNSWP   37 (129)
Q Consensus         7 G~KR~C~~Cg~KFYDlnk~---PiiCP~CG~e~~   37 (129)
                      -.|.+||.||..  -+.|.   -=.|-+||..|.
T Consensus        25 ~aky~C~fCgk~--~vkR~~~GIW~C~~C~~~~A   56 (83)
T 1vq8_Z           25 NEDHACPNCGED--RVDRQGTGIWQCSYCDYKFT   56 (83)
T ss_dssp             HSCEECSSSCCE--EEEEEETTEEEETTTCCEEE
T ss_pred             HCCCCCCCCCCC--CEEEEEEEEEECCCCCCEEE
T ss_conf             079519898997--12888888878899999872


No 211
>>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=28.41  E-value=29  Score=16.00  Aligned_cols=20  Identities=0%  Similarity=-0.089  Sum_probs=14.7

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +..|-.|+.||..|.-...+
T Consensus         9 gekpy~C~~C~k~F~~~s~L   28 (46)
T 2emh_A            9 GERPYICTVCGKAFTDRSNL   28 (46)
T ss_dssp             CCCSEECTTTCCEESSHHHH
T ss_pred             CCCCEECCCCCCCCCCHHHH
T ss_conf             99897899899841407888


No 212
>>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=28.40  E-value=22  Score=16.71  Aligned_cols=15  Identities=0%  Similarity=0.040  Sum_probs=12.4

Q ss_pred             CCCCCCCCCCEECHH
Q ss_conf             872277898715323
Q gi|254780459|r   25 QVIVSPYTQNSWPLA   39 (129)
Q Consensus        25 ~PiiCP~CG~e~~~~   39 (129)
                      -|++|.+||..|=+.
T Consensus        26 lp~~C~~C~~~fC~~   40 (63)
T 1x4v_A           26 MKLTCERCSRNFCIK   40 (63)
T ss_dssp             SCCBCSSSCCBCCHH
T ss_pred             CCEECCCCCCCHHHC
T ss_conf             020753328512052


No 213
>>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, Zn-binding protein, DNA-binding, transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A (A:)
Probab=28.24  E-value=21  Score=16.92  Aligned_cols=33  Identities=15%  Similarity=0.130  Sum_probs=20.0

Q ss_pred             CCCCCC-CEEE--------ECC------C-CC-CCCCCCCCEE-CHHHHHC
Q ss_conf             178888-7442--------148------8-87-2277898715-3233101
Q gi|254780459|r   11 TCPDTG-KRFY--------DLN------K-QV-IVSPYTQNSW-PLAYFEA   43 (129)
Q Consensus        11 ~C~~Cg-~KFY--------Dln------k-~P-iiCP~CG~e~-~~~~~~~   43 (129)
                      .||.|| ..+.        .++      + -| .+|+.||..| .++.+.+
T Consensus         4 kCp~Cg~g~l~~~~~~~~~~y~G~~~~I~~vp~~~C~~CGE~~~~~e~~~~   54 (78)
T 3ga8_A            4 KCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMNKEESDA   54 (78)
T ss_dssp             BCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEETTTCCEECCHHHHHH
T ss_pred             CCCCCCCCEEECCEEEEEEEECCEEEEECCCCCCCCCCCCCEEECHHHHHH
T ss_conf             088589814364405558998989999767675427999877748999999


No 214
>>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=28.09  E-value=28  Score=16.09  Aligned_cols=21  Identities=10%  Similarity=-0.088  Sum_probs=15.4

Q ss_pred             CCCCCCCCCCCCCEECHHHHH
Q ss_conf             488872277898715323310
Q gi|254780459|r   22 LNKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        22 lnk~PiiCP~CG~e~~~~~~~   42 (129)
                      .+..|-.|+.||..|.-...+
T Consensus         8 tgekpy~C~~Cgk~F~~~~~L   28 (46)
T 2em9_A            8 TGEKPYNCKECGKSFRWASCL   28 (46)
T ss_dssp             CCCCSEECSSSCCEESSHHHH
T ss_pred             CCCCCEECCCCCCCCCCHHHH
T ss_conf             899893889899954418888


No 215
>>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=28.08  E-value=27  Score=16.18  Aligned_cols=19  Identities=0%  Similarity=-0.038  Sum_probs=14.7

Q ss_pred             CCCCCCCCCCCCCEECHHH
Q ss_conf             4888722778987153233
Q gi|254780459|r   22 LNKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus        22 lnk~PiiCP~CG~e~~~~~   40 (129)
                      .++.|-.|+.||..|.-..
T Consensus         8 tgekp~~C~~C~k~F~~~~   26 (46)
T 2enh_A            8 TGEKPYECDVCRKAFSHHA   26 (46)
T ss_dssp             CCSSSCBCTTTCCBCSSSH
T ss_pred             CCCCCEECCCCCCEECCHH
T ss_conf             8986978898798707378


No 216
>>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=27.84  E-value=25  Score=16.38  Aligned_cols=20  Identities=5%  Similarity=-0.112  Sum_probs=14.6

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +..|-.|+.||..|.-...+
T Consensus         9 gekpf~C~~C~k~F~~~s~L   28 (44)
T 2eou_A            9 AKTTSECQECGKIFRHSSLL   28 (44)
T ss_dssp             SSCCCCCTTTCCCCSSHHHH
T ss_pred             CCCCEECCCCCCEECCCHHH
T ss_conf             88784289887605861223


No 217
>>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} (A:)
Probab=27.76  E-value=17  Score=17.46  Aligned_cols=28  Identities=21%  Similarity=0.647  Sum_probs=12.9

Q ss_pred             CCCCCCCCCE---EEECCCC----C----CCCCCCCCEE
Q ss_conf             3117888874---4214888----7----2277898715
Q gi|254780459|r    9 KRTCPDTGKR---FYDLNKQ----V----IVSPYTQNSW   36 (129)
Q Consensus         9 KR~C~~Cg~K---FYDlnk~----P----iiCP~CG~e~   36 (129)
                      +..||.||.+   ||=+--.    |    .+|.+||..|
T Consensus        15 ~~~C~~C~~~~a~f~q~Q~RsaDE~~T~fy~C~~C~~~w   53 (57)
T 1qyp_A           15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTW   53 (57)
T ss_dssp             ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEE
T ss_pred             CCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCC
T ss_conf             489989979815999853033677875999928989865


No 218
>>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=27.65  E-value=37  Score=15.33  Aligned_cols=30  Identities=13%  Similarity=0.174  Sum_probs=16.7

Q ss_pred             HHCCCCCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf             227831178888744214888722778987
Q gi|254780459|r    5 ELGTKRTCPDTGKRFYDLNKQVIVSPYTQN   34 (129)
Q Consensus         5 elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~   34 (129)
                      .+-..++|+.|.-.=+-=+..+-.||.|+-
T Consensus        24 ~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G   53 (104)
T 2ctt_A           24 TVNIMDTCERCNGKGNEPGTKVQHCHYCGG   53 (104)
T ss_dssp             CSSCCEECSSSSSSSSCTTCCCEECSSSSS
T ss_pred             EECCCCCCCCCCCCCCCCCCCCEECCCCCE
T ss_conf             651443468644640124555400475450


No 219
>>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=27.62  E-value=29  Score=15.98  Aligned_cols=20  Identities=0%  Similarity=-0.119  Sum_probs=14.8

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      ...|-.|+.||..|.-...+
T Consensus         9 geKpy~C~~C~k~F~~~~~L   28 (46)
T 2eml_A            9 GEKPYECSVCGKAFSHRQSL   28 (46)
T ss_dssp             SCCSEECSSSCCEESSHHHH
T ss_pred             CCCCEECCCCCCCCCCHHHH
T ss_conf             99897889889830728897


No 220
>>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=27.55  E-value=30  Score=15.90  Aligned_cols=20  Identities=0%  Similarity=-0.179  Sum_probs=14.3

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      ...|-.|..||..|.-..-+
T Consensus         8 gekpy~C~~Cgk~F~~~s~L   27 (42)
T 2ytb_A            8 GEKPYRCDQCGKAFSQKGSL   27 (42)
T ss_dssp             SCCSBCCTTTTCCBSSHHHH
T ss_pred             CCCCEECCCCCCCCCCHHHH
T ss_conf             99798789999977767887


No 221
>>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=27.49  E-value=28  Score=16.12  Aligned_cols=17  Identities=6%  Similarity=-0.095  Sum_probs=13.4

Q ss_pred             CCCCCCCCCCCCEECHH
Q ss_conf             88872277898715323
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLA   39 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~   39 (129)
                      +..|-.|+.||..|.-.
T Consensus         9 gekpy~C~~Cgk~F~~~   25 (47)
T 2epx_A            9 GKKPYECIECGKAFIQN   25 (47)
T ss_dssp             CCCSBCCSSSCCCBSSH
T ss_pred             CCCCEECCCCCCEECCC
T ss_conf             99897459999170674


No 222
>>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=27.46  E-value=29  Score=16.05  Aligned_cols=21  Identities=5%  Similarity=-0.137  Sum_probs=15.4

Q ss_pred             CCCCCCCCCCCCCEECHHHHH
Q ss_conf             488872277898715323310
Q gi|254780459|r   22 LNKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        22 lnk~PiiCP~CG~e~~~~~~~   42 (129)
                      .+..|-.|..||..|.-...+
T Consensus         8 tgekpy~C~~Cgk~F~~~s~l   28 (44)
T 2eof_A            8 TGEKPYECNECQKAFNTKSNL   28 (44)
T ss_dssp             SCCCSEECTTTCCEESCHHHH
T ss_pred             CCCCCEECCCCCCEECCHHHH
T ss_conf             799694789879885987785


No 223
>>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=27.42  E-value=26  Score=16.26  Aligned_cols=20  Identities=5%  Similarity=-0.016  Sum_probs=15.0

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +..|-.|+.||..|.-...+
T Consensus         9 gekp~~C~~C~k~F~~~s~L   28 (44)
T 2en7_A            9 GMKPYVCNECGKAFRSKSYL   28 (44)
T ss_dssp             SSSSSCCTTTCCCCSSHHHH
T ss_pred             CCCCEECCCCCCEECCHHHH
T ss_conf             98886429998380787785


No 224
>>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=27.32  E-value=29  Score=16.01  Aligned_cols=19  Identities=0%  Similarity=-0.268  Sum_probs=14.0

Q ss_pred             CCCCCCCCCCCCEECHHHH
Q ss_conf             8887227789871532331
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~   41 (129)
                      +..|-.|+.||..|.-...
T Consensus         9 gekp~~C~~Cgk~F~~~s~   27 (46)
T 2yso_A            9 REKSHQCRECGEIFFQYVS   27 (46)
T ss_dssp             CCCCEECTTTCCEESSHHH
T ss_pred             CCCCEECCCCCCCCCCCHH
T ss_conf             9969578998998444177


No 225
>>2ckl_A Polycomb group ring finger protein 4; BMI1, zinc, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 2h0d_A (A:1-84)
Probab=27.28  E-value=27  Score=16.17  Aligned_cols=31  Identities=13%  Similarity=0.069  Sum_probs=21.1

Q ss_pred             CCCCCCCCCCCEEEECCCCCCCCCCCCCEECHHHH
Q ss_conf             78311788887442148887227789871532331
Q gi|254780459|r    7 GTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus         7 G~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~   41 (129)
                      =....||-|-..|    ++|++++.||+.|--.=+
T Consensus        13 ~~~~~C~IC~~~~----~~pv~~~~CgH~fc~~Ci   43 (84)
T 2ckl_A           13 NPHLMCVLCGGYF----IDATTIIECLHSFCKTCI   43 (84)
T ss_dssp             GGGTBCTTTSSBC----SSEEEETTTCCEEEHHHH
T ss_pred             CCCCCCCCCCHHH----HCCCCCCCCCCCCHHHHH
T ss_conf             9999997789565----378768999974379999


No 226
>>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, apoptosis, cytoplasm, metal-binding, nucleus, phosphoprotein, transcription; 1.80A {Homo sapiens} (A:)
Probab=27.04  E-value=25  Score=16.40  Aligned_cols=20  Identities=0%  Similarity=-0.209  Sum_probs=13.2

Q ss_pred             CCCCCCCCCCCEECHHHHHC
Q ss_conf             88722778987153233101
Q gi|254780459|r   24 KQVIVSPYTQNSWPLAYFEA   43 (129)
Q Consensus        24 k~PiiCP~CG~e~~~~~~~~   43 (129)
                      ..|-.|+-||.-|---.-++
T Consensus         5 ~KPy~C~vCgKrYKN~~GL~   24 (48)
T 3iuf_A            5 DKPYACDICGKRYKNRPGLS   24 (48)
T ss_dssp             TSCEECTTTCCEESSHHHHH
T ss_pred             CCCCCCHHHHHHHCCCCCCH
T ss_conf             77611504555543787620


No 227
>>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=27.03  E-value=29  Score=16.03  Aligned_cols=18  Identities=0%  Similarity=0.006  Sum_probs=13.7

Q ss_pred             CCCCCCCCCCCCEECHHH
Q ss_conf             888722778987153233
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~   40 (129)
                      ...|-.|+.||..|.-..
T Consensus         9 gekp~~C~~Cgk~F~~~s   26 (46)
T 2emg_A            9 GENPFICSECGKVFTHKT   26 (46)
T ss_dssp             SCCSCBCTTTCCBCSSHH
T ss_pred             CCCCEECCCCCCCCCCHH
T ss_conf             998978999998306188


No 228
>>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=26.98  E-value=30  Score=15.93  Aligned_cols=20  Identities=5%  Similarity=-0.104  Sum_probs=14.7

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +..|-.|+.||..|.-...+
T Consensus         9 gekpy~C~~Cgk~F~~~s~L   28 (46)
T 2eop_A            9 GEKPHECRECGKSFSFNSQL   28 (46)
T ss_dssp             CCCSCBCTTTCCBCSSHHHH
T ss_pred             CCCCEECCCCCCEECCHHHH
T ss_conf             99895889999730707785


No 229
>>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=26.83  E-value=32  Score=15.72  Aligned_cols=20  Identities=0%  Similarity=-0.152  Sum_probs=14.7

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +..|-.|+.||..|.-...+
T Consensus         9 gekpy~C~~Cgk~F~~~~~l   28 (46)
T 2ytk_A            9 GEKPYKCNECGKVFTQNSHL   28 (46)
T ss_dssp             SSCSEECSSSCCEESSHHHH
T ss_pred             CCCCEECCCCCCCCCCHHHH
T ss_conf             98997899999855777887


No 230
>>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=26.75  E-value=31  Score=15.85  Aligned_cols=19  Identities=0%  Similarity=-0.074  Sum_probs=14.1

Q ss_pred             CCCCCCCCCCCCEECHHHH
Q ss_conf             8887227789871532331
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~   41 (129)
                      ...|-.|+.||..|.-...
T Consensus         9 geKp~~C~~Cgk~F~~~~~   27 (44)
T 2epv_A            9 GEKPYECNECGKAFIWKSL   27 (44)
T ss_dssp             CCCSEECSSSCCEESSHHH
T ss_pred             CCCCEECCCCCCCCCCCHH
T ss_conf             9889836999808456232


No 231
>>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} (A:)
Probab=26.73  E-value=31  Score=15.82  Aligned_cols=20  Identities=0%  Similarity=-0.197  Sum_probs=14.6

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      ...|-.|+.||..|.-...+
T Consensus         7 gekpy~C~~Cgk~F~~~s~L   26 (42)
T 2el5_A            7 GENPYECSECGKAFNRKDQL   26 (42)
T ss_dssp             SCCSEECSSSCCEESSHHHH
T ss_pred             CCCCEECCCCCCEECCHHHH
T ss_conf             99798789889851765786


No 232
>>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=26.72  E-value=31  Score=15.82  Aligned_cols=21  Identities=0%  Similarity=-0.227  Sum_probs=14.9

Q ss_pred             CCCCCCCCCCCCCEECHHHHH
Q ss_conf             488872277898715323310
Q gi|254780459|r   22 LNKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        22 lnk~PiiCP~CG~e~~~~~~~   42 (129)
                      .+..|-.|+.||..|.-...+
T Consensus         8 tgekpy~C~~Cgk~F~~~s~L   28 (46)
T 2em8_A            8 SGEKPYKCVECGKGYKRRLDL   28 (46)
T ss_dssp             CSCCSEECSSSCCEESSHHHH
T ss_pred             CCCCCEECCCCCEEEECCCCC
T ss_conf             898883889899771215553


No 233
>>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=26.67  E-value=32  Score=15.78  Aligned_cols=19  Identities=0%  Similarity=-0.127  Sum_probs=14.0

Q ss_pred             CCCCCCCCCCCCCEECHHH
Q ss_conf             4888722778987153233
Q gi|254780459|r   22 LNKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus        22 lnk~PiiCP~CG~e~~~~~   40 (129)
                      ....|-.|+.||..|.-..
T Consensus         8 tgekpy~C~~Cgk~F~~~s   26 (46)
T 2epw_A            8 TGEKPCKCTECGKAFCWKS   26 (46)
T ss_dssp             CCCCSEECSSSCCEESSSH
T ss_pred             CCCCCEECCCCCEECCCHH
T ss_conf             8998958499982414668


No 234
>>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=26.49  E-value=32  Score=15.71  Aligned_cols=20  Identities=0%  Similarity=-0.172  Sum_probs=14.7

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +..|-.|+.||..|.-...+
T Consensus         9 gekpy~C~~C~k~F~~~~~l   28 (46)
T 2en8_A            9 GEKSHTCDECGKNFCYISAL   28 (46)
T ss_dssp             CCSSEECTTTCCEESSHHHH
T ss_pred             CCCCEECCCCCCCCCCHHHH
T ss_conf             98894789189856537887


No 235
>>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} (C:59-88)
Probab=26.36  E-value=31  Score=15.81  Aligned_cols=19  Identities=5%  Similarity=0.207  Sum_probs=12.7

Q ss_pred             CCCCCCCC--CCCEECHHHHH
Q ss_conf             88722778--98715323310
Q gi|254780459|r   24 KQVIVSPY--TQNSWPLAYFE   42 (129)
Q Consensus        24 k~PiiCP~--CG~e~~~~~~~   42 (129)
                      -.|-.||.  ||..|.-..-+
T Consensus         2 ekPy~C~~~gCgk~F~~~s~L   22 (30)
T 1ubd_C            2 EKPFQCTFEGCGKRFSLDFNL   22 (30)
T ss_dssp             CCCEECCSTTCCCEESCHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCC
T ss_conf             221111123333221211202


No 236
>>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=26.25  E-value=30  Score=15.90  Aligned_cols=20  Identities=5%  Similarity=-0.178  Sum_probs=15.1

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +..|-.|+.||..|.-...+
T Consensus         9 gekpy~C~~Cgk~F~~~s~l   28 (46)
T 2ep1_A            9 GEKPYECSDCGKSFIKKSQL   28 (46)
T ss_dssp             SCCSSCCSSSCCCCSSHHHH
T ss_pred             CCCCEECCCCCCEECCHHHH
T ss_conf             98997889999800758897


No 237
>>2i13_A AART; DNA binding, zinc finger, DNA binding protein/DNA complex; 1.96A {Mus musculus} (A:74-102)
Probab=25.86  E-value=28  Score=16.07  Aligned_cols=18  Identities=11%  Similarity=0.030  Sum_probs=12.5

Q ss_pred             CCCCCCCCCCCEECHHHH
Q ss_conf             887227789871532331
Q gi|254780459|r   24 KQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        24 k~PiiCP~CG~e~~~~~~   41 (129)
                      -.|-.|+.||..|.-...
T Consensus         2 Ekpy~C~~Cgk~F~~~s~   19 (29)
T 2i13_A            2 EKPYKCPECGKSFSQRAN   19 (29)
T ss_dssp             CCCEECTTTCCEESCHHH
T ss_pred             CCCCCCCCCCCCCCCHHH
T ss_conf             878556667875688899


No 238
>>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:42-86)
Probab=25.64  E-value=28  Score=16.07  Aligned_cols=16  Identities=6%  Similarity=0.065  Sum_probs=11.2

Q ss_pred             CCCCCCCCCCEECHHH
Q ss_conf             8722778987153233
Q gi|254780459|r   25 QVIVSPYTQNSWPLAY   40 (129)
Q Consensus        25 ~PiiCP~CG~e~~~~~   40 (129)
                      .-.+|-+||..|....
T Consensus         5 ~afvcskcgktftrrn   20 (45)
T 1x6h_A            5 AAFVCSKCGKTFTRRN   20 (45)
T ss_dssp             CCEECSSSCCEESCHH
T ss_pred             CEEEEECCCCCCCCCC
T ss_conf             0000000000000145


No 239
>>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} (A:42-77)
Probab=25.57  E-value=25  Score=16.37  Aligned_cols=12  Identities=8%  Similarity=0.022  Sum_probs=8.2

Q ss_pred             CCCCCCCCEECH
Q ss_conf             227789871532
Q gi|254780459|r   27 IVSPYTQNSWPL   38 (129)
Q Consensus        27 iiCP~CG~e~~~   38 (129)
                      -.||-|++.+..
T Consensus         5 ~qCPHC~T~iAR   16 (36)
T 2ct1_A            5 FHCPHCDTVIAR   16 (36)
T ss_dssp             EECSSSSCEESS
T ss_pred             EECCCCCCEECC
T ss_conf             378899999699


No 240
>>1s1i_9 L37A, YL35, 60S ribosomal protein L43; 80S ribosome, 60S ribosomal subunit, EEF2, tRNA translocation, sordarin, cryo-EM; 11.70A {Saccharomyces cerevisiae} (9:)
Probab=25.52  E-value=27  Score=16.21  Aligned_cols=30  Identities=10%  Similarity=0.243  Sum_probs=21.3

Q ss_pred             CCCCCCCCCCCEEEECCCC---CCCCCCCCCEECH
Q ss_conf             7831178888744214888---7227789871532
Q gi|254780459|r    7 GTKRTCPDTGKRFYDLNKQ---VIVSPYTQNSWPL   38 (129)
Q Consensus         7 G~KR~C~~Cg~KFYDlnk~---PiiCP~CG~e~~~   38 (129)
                      -.|.+||.||..  -+.|.   --.|-+||..|.-
T Consensus        33 ~aky~C~fCgk~--~vkR~a~GIW~C~~C~~~~AG   65 (91)
T 1s1i_9           33 HARYDCSFCGKK--TVKRGAAGIWTCSCCKKTVAG   65 (91)
T ss_dssp             SSCCCCTTTCSS--CCCEETTTEECCSSSCCCEEC
T ss_pred             CCCCCCCCCCCC--EEEEEEEEEEECCCCCCEEEC
T ss_conf             688239899997--348998888687999988867


No 241
>>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:40-72)
Probab=25.50  E-value=30  Score=15.94  Aligned_cols=18  Identities=0%  Similarity=-0.274  Sum_probs=12.5

Q ss_pred             CCCCCCCCCCEECHHHHH
Q ss_conf             872277898715323310
Q gi|254780459|r   25 QVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        25 ~PiiCP~CG~e~~~~~~~   42 (129)
                      .|-.|..||..|.-...+
T Consensus         2 Kpy~C~~CgK~F~~~s~L   19 (33)
T 1x6e_A            2 KPYKCLECGKAFSQNSGL   19 (33)
T ss_dssp             CCEECSSSCCEESSHHHH
T ss_pred             ECEECCCCCCCCCCHHHH
T ss_conf             010106578730888899


No 242
>>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} (A:1-41)
Probab=25.50  E-value=33  Score=15.63  Aligned_cols=18  Identities=6%  Similarity=0.235  Sum_probs=12.8

Q ss_pred             CCCCCCCCC--CCCEECHHH
Q ss_conf             888722778--987153233
Q gi|254780459|r   23 NKQVIVSPY--TQNSWPLAY   40 (129)
Q Consensus        23 nk~PiiCP~--CG~e~~~~~   40 (129)
                      +..|-.||.  ||..|.-..
T Consensus        12 gekpy~C~~~~C~K~F~~~s   31 (41)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSS   31 (41)
T ss_dssp             SCCCEECCSSSCCCEESCHH
T ss_pred             CCCCEECCCCCCCCEECCHH
T ss_conf             97897788888997848888


No 243
>>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), zinc finger, DNA-binding protein; HET: DNA; 1.60A {Mus musculus} (A:1-30)
Probab=25.50  E-value=30  Score=15.90  Aligned_cols=17  Identities=6%  Similarity=0.059  Sum_probs=11.6

Q ss_pred             CCCCCCC--CCCEECHHHH
Q ss_conf             8722778--9871532331
Q gi|254780459|r   25 QVIVSPY--TQNSWPLAYF   41 (129)
Q Consensus        25 ~PiiCP~--CG~e~~~~~~   41 (129)
                      .|-+||.  ||..|.-..-
T Consensus         3 kPy~C~~~gC~k~F~~~~~   21 (30)
T 1a1h_A            3 RPYACPVESCDRRFSQSGS   21 (30)
T ss_dssp             CCEECCSSSCCCEESSHHH
T ss_pred             CCCCCCCCCCCCCCCCHHH
T ss_conf             8881995658899497667


No 244
>>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Simian mason-pfizer virus} (A:)
Probab=25.42  E-value=29  Score=16.02  Aligned_cols=16  Identities=13%  Similarity=-0.070  Sum_probs=11.5

Q ss_pred             CCCCCCCCCCCCCEEC
Q ss_conf             4888722778987153
Q gi|254780459|r   22 LNKQVIVSPYTQNSWP   37 (129)
Q Consensus        22 lnk~PiiCP~CG~e~~   37 (129)
                      ....++.|+.||..--
T Consensus        26 ~~~~~~~C~~Cg~~GH   41 (60)
T 1cl4_A           26 EPKVPGLCPRCKRGKH   41 (60)
T ss_dssp             ---CCCSCSSCSSCSS
T ss_pred             CCCCCCCCCCCCCCCC
T ss_conf             8998981877899987


No 245
>>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (2:)
Probab=25.40  E-value=42  Score=15.04  Aligned_cols=23  Identities=22%  Similarity=0.366  Sum_probs=19.7

Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf             1178888744214888722778987
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQVIVSPYTQN   34 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~PiiCP~CG~   34 (129)
                      -.|.-||.+=|-+.|.  .|-+||.
T Consensus        17 tlCrRCGr~syH~qK~--~CasCGy   39 (97)
T 2zkr_2           17 TLCRRCGSKAYHLQKS--TCGKCGY   39 (97)
T ss_dssp             ECCTTTCSSCEETTSC--CBTTTCT
T ss_pred             CHHCCCCCHHHHHHCC--CCCCCCC
T ss_conf             7210668623433022--2454688


No 246
>>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=25.38  E-value=33  Score=15.67  Aligned_cols=18  Identities=0%  Similarity=-0.053  Sum_probs=13.8

Q ss_pred             CCCCCCCCCCCCEECHHH
Q ss_conf             888722778987153233
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~   40 (129)
                      +..|-.|+.||..|.-..
T Consensus         9 gekpy~C~~Cgk~F~~~s   26 (46)
T 2emk_A            9 GEKPYECKECGKAFSQTT   26 (46)
T ss_dssp             SSCSCBCSSSCCBCSCHH
T ss_pred             CCCCEECCCCCCCCCCHH
T ss_conf             998968999898327888


No 247
>>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=25.30  E-value=35  Score=15.50  Aligned_cols=21  Identities=5%  Similarity=-0.134  Sum_probs=15.2

Q ss_pred             CCCCCCCCCCCCCEECHHHHH
Q ss_conf             488872277898715323310
Q gi|254780459|r   22 LNKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        22 lnk~PiiCP~CG~e~~~~~~~   42 (129)
                      ....|-.|+.||..|.-...+
T Consensus         8 tgeKpy~C~~Cgk~F~~~s~L   28 (46)
T 2ytn_A            8 TGKKPYKCNECGKVFTQNSHL   28 (46)
T ss_dssp             SCCSSCBCTTTCCBCSSHHHH
T ss_pred             CCCCCEECCCCCCCCCCHHHH
T ss_conf             899896789999831778897


No 248
>>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=25.23  E-value=34  Score=15.62  Aligned_cols=20  Identities=10%  Similarity=0.052  Sum_probs=14.8

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +..|-.|+.||..|.-...+
T Consensus         9 g~kpf~C~~C~k~F~~~~~L   28 (44)
T 2emb_A            9 TRKRYECSKCQATFNLRKHL   28 (44)
T ss_dssp             CCSSEECTTTCCEESCHHHH
T ss_pred             CCCCEECCCCCCCCCCHHHH
T ss_conf             98794389898855315899


No 249
>>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} (A:)
Probab=25.12  E-value=30  Score=15.92  Aligned_cols=20  Identities=5%  Similarity=-0.135  Sum_probs=14.7

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +..|-.|+.||..|.-...+
T Consensus         9 gekp~~C~~Cgk~F~~~s~L   28 (46)
T 2em0_A            9 GEKTWKCRECDMCFSQASSL   28 (46)
T ss_dssp             CCCCCCCSSSCCCCSSHHHH
T ss_pred             CCCCEECCCCCCCCCCHHHH
T ss_conf             88893899999881866787


No 250
>>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} (A:)
Probab=25.09  E-value=35  Score=15.52  Aligned_cols=20  Identities=5%  Similarity=-0.140  Sum_probs=14.6

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +..|-.|+.||..|.-...+
T Consensus         9 gekpy~C~~C~k~F~~~s~L   28 (46)
T 2el6_A            9 GVNPYKCSQCEKSFSGKLRL   28 (46)
T ss_dssp             CCCSEECSSSSCEESSHHHH
T ss_pred             CCCCEECCCCCCEECCHHHH
T ss_conf             98897899999684867786


No 251
>>1nkw_1 50S ribosomal protein L33; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} (1:)
Probab=25.09  E-value=27  Score=16.22  Aligned_cols=28  Identities=14%  Similarity=0.133  Sum_probs=21.1

Q ss_pred             CCCCCCCCCCCEEEECCCCCC----------CCCCCCC
Q ss_conf             783117888874421488872----------2778987
Q gi|254780459|r    7 GTKRTCPDTGKRFYDLNKQVI----------VSPYTQN   34 (129)
Q Consensus         7 G~KR~C~~Cg~KFYDlnk~Pi----------iCP~CG~   34 (129)
                      ..+-.|..||.+||=..|++-          -||.|+.
T Consensus        36 ~I~L~ct~c~~~nY~T~KNrk~~pekLeLkKYcP~~rk   73 (82)
T 1nkw_1           36 IVKMESSAGTGFYYTTTKNRRNTQAKLELKKYDPVAKK   73 (82)
T ss_pred             EEEEEEECCCCCEEEECCCCCCCCCCEEEECCCCCCCC
T ss_conf             99999847889889764678899302378635876553


No 252
>>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=25.06  E-value=35  Score=15.49  Aligned_cols=18  Identities=6%  Similarity=-0.010  Sum_probs=14.0

Q ss_pred             CCCCCCCCCCCCEECHHH
Q ss_conf             888722778987153233
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~   40 (129)
                      +..|-.|+.||..|.-..
T Consensus         9 gekpy~C~~Cgk~F~~~~   26 (46)
T 2ep2_A            9 GEKPYECSICGKSFTKKS   26 (46)
T ss_dssp             CCCSEECSSSCCEESSHH
T ss_pred             CCCCEECCCCCCEECCHH
T ss_conf             988978998898747878


No 253
>>2zkr_z 60S ribosomal protein L37A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1ysh_D (z:1-71)
Probab=24.88  E-value=30  Score=15.94  Aligned_cols=28  Identities=18%  Similarity=0.248  Sum_probs=17.8

Q ss_pred             CCCCCCCCCCEEEECCCCC---CCCCCCCCEEC
Q ss_conf             8311788887442148887---22778987153
Q gi|254780459|r    8 TKRTCPDTGKRFYDLNKQV---IVSPYTQNSWP   37 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDlnk~P---iiCP~CG~e~~   37 (129)
                      .|++||.||..  .+.|.-   =.|-+||..|.
T Consensus        35 a~y~CpfCgk~--~vkR~a~GIW~C~~C~~~~A   65 (71)
T 2zkr_z           35 AKYTCSFCGKT--KMKRRAVGIWHCGSCMKTVA   65 (71)
T ss_dssp             SCBCCSSSCSS--CEEEEETTEEEETTTCCEEE
T ss_pred             CCCCCCCCCCC--EEEEEEEEEEECCCCCCEEE
T ss_conf             78619999997--46888888868889999875


No 254
>>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=24.85  E-value=31  Score=15.84  Aligned_cols=18  Identities=11%  Similarity=0.130  Sum_probs=13.8

Q ss_pred             CCCCCCCCCCCCEECHHH
Q ss_conf             888722778987153233
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~   40 (129)
                      +..|-.|+.||..|.-..
T Consensus         9 gekpy~C~~C~k~F~~~s   26 (46)
T 2ytt_A            9 GEKPYQCSECGKSFSGSY   26 (46)
T ss_dssp             CCCTTCCSSSCCCCSSHH
T ss_pred             CCCCEECCCCCCEECCHH
T ss_conf             988958898899704458


No 255
>>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=24.81  E-value=36  Score=15.43  Aligned_cols=20  Identities=0%  Similarity=-0.162  Sum_probs=14.7

Q ss_pred             CCCCCCCCCCCCCEECHHHH
Q ss_conf             48887227789871532331
Q gi|254780459|r   22 LNKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        22 lnk~PiiCP~CG~e~~~~~~   41 (129)
                      .+..|-.|+.||..|.-...
T Consensus         8 tgeKpy~C~~Cgk~F~~~s~   27 (46)
T 2yrj_A            8 TGEKPYRCGECGKAFAQKAN   27 (46)
T ss_dssp             CCCCCEECSSSCCEESSHHH
T ss_pred             CCCCCEECCCCCCCCCCHHH
T ss_conf             79889388998981277888


No 256
>>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=24.70  E-value=35  Score=15.52  Aligned_cols=19  Identities=5%  Similarity=-0.080  Sum_probs=14.2

Q ss_pred             CCCCCCCCCCCCEECHHHH
Q ss_conf             8887227789871532331
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~   41 (129)
                      ...|-.|+.||..|.-...
T Consensus         9 geKpy~C~~Cgk~F~~~s~   27 (46)
T 2eoh_A            9 GKKPYECKECRKTFIQIGH   27 (46)
T ss_dssp             CSCSCCCSSSCCCCSSHHH
T ss_pred             CCCCEECCCCCCCCCCHHH
T ss_conf             9988078978885665266


No 257
>>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=24.66  E-value=28  Score=16.14  Aligned_cols=19  Identities=0%  Similarity=0.046  Sum_probs=14.3

Q ss_pred             CCCCCCCCCCCCEECHHHH
Q ss_conf             8887227789871532331
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~   41 (129)
                      +..|-.|+.||..|.-...
T Consensus         9 gekpy~C~~Cgk~F~~~~~   27 (44)
T 2eox_A            9 DSKSYNCNECGKAFTRIFH   27 (44)
T ss_dssp             CCCCEEETTTTEEESSSHH
T ss_pred             CCCCCCCCCCCCEECCHHH
T ss_conf             9858118998884387578


No 258
>>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} (W:1-61)
Probab=24.61  E-value=27  Score=16.20  Aligned_cols=29  Identities=21%  Similarity=0.220  Sum_probs=18.6

Q ss_pred             CCCCCCCCCCCEEEECCCCC---CCCCCCCCEEC
Q ss_conf             78311788887442148887---22778987153
Q gi|254780459|r    7 GTKRTCPDTGKRFYDLNKQV---IVSPYTQNSWP   37 (129)
Q Consensus         7 G~KR~C~~Cg~KFYDlnk~P---iiCP~CG~e~~   37 (129)
                      -.|.+||.||+.  -+.|.-   =.|-+||..|.
T Consensus        25 ~~ky~C~fCgk~--~vkR~a~GIW~C~~C~~~~A   56 (61)
T 1ffk_W           25 KKKYKCPVCGFP--KLKRASTSIWVCGHCGYKIA   56 (61)
T ss_pred             CCCCCCCCCCCC--EEEEEEEEEEECCCCCCEEC
T ss_conf             157459999985--04777887897478998502


No 259
>>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=24.57  E-value=31  Score=15.85  Aligned_cols=23  Identities=13%  Similarity=0.205  Sum_probs=15.5

Q ss_pred             CCCCCCCCCEEEECCCCCCCCCCCCCEE
Q ss_conf             3117888874421488872277898715
Q gi|254780459|r    9 KRTCPDTGKRFYDLNKQVIVSPYTQNSW   36 (129)
Q Consensus         9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e~   36 (129)
                      -++|..|+.+..=     -.||.|+.-|
T Consensus        14 ~~~C~vC~~~~~k-----Y~CP~C~~~y   36 (59)
T 1x4s_A           14 CGFCPAGEVQPAR-----YTCPRCNAPY   36 (59)
T ss_dssp             ECSSCTTCCEEEC-----EECTTTCCEE
T ss_pred             CCCCCCCCCCCCC-----CCCCCCCCCC
T ss_conf             8608154577775-----3187979833


No 260
>>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=24.51  E-value=36  Score=15.41  Aligned_cols=18  Identities=0%  Similarity=-0.162  Sum_probs=13.8

Q ss_pred             CCCCCCCCCCCCEECHHH
Q ss_conf             888722778987153233
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~   40 (129)
                      ...|-.|+.||..|.-..
T Consensus         9 gekpy~C~~Cgk~F~~~s   26 (46)
T 2eoo_A            9 GERPYGCNECGKNFGRHS   26 (46)
T ss_dssp             CCCCEECSSSCCEESSHH
T ss_pred             CCCCEECCCCCCCCCCHH
T ss_conf             998948998898444388


No 261
>>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} (A:116-234)
Probab=24.51  E-value=27  Score=16.23  Aligned_cols=28  Identities=7%  Similarity=0.051  Sum_probs=20.2

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCEECH
Q ss_conf             1788887442148887227789871532
Q gi|254780459|r   11 TCPDTGKRFYDLNKQVIVSPYTQNSWPL   38 (129)
Q Consensus        11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~   38 (129)
                      -|++||+-.=.....-..|.-||+.+.+
T Consensus        11 ~c~~c~~~l~~~~~~~~~c~r~~~~ve~   38 (119)
T 2d5b_A           11 YCVSCERFYTEKELVEGLCPIHGRPVER   38 (119)
T ss_dssp             EETTTTEECCTTTSBTTBCTTTCSBCEE
T ss_pred             CCCCCCCEECCHHHCCCCCCCCCCCEEE
T ss_conf             4024530104012012233333331011


No 262
>>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=24.48  E-value=36  Score=15.47  Aligned_cols=19  Identities=11%  Similarity=-0.053  Sum_probs=13.6

Q ss_pred             CCCCCCCCCCCCEECHHHH
Q ss_conf             8887227789871532331
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~   41 (129)
                      +..|-.|+.||..|.-...
T Consensus         7 geKpy~C~~C~k~F~~~~~   25 (41)
T 2ept_A            7 GQRVYECQECGKSFRQKGS   25 (41)
T ss_dssp             CCCCEECSSSCCEESSHHH
T ss_pred             CCCCEECCCCCCEECCHHH
T ss_conf             9999776999955279889


No 263
>>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} (A:)
Probab=24.46  E-value=31  Score=15.86  Aligned_cols=29  Identities=14%  Similarity=0.300  Sum_probs=19.1

Q ss_pred             CCCCCCCC--CCCEEEECCCCCCCCCCCCCEECHH
Q ss_conf             78311788--8874421488872277898715323
Q gi|254780459|r    7 GTKRTCPD--TGKRFYDLNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus         7 G~KR~C~~--Cg~KFYDlnk~PiiCP~CG~e~~~~   39 (129)
                      ...-.|..  |+.+=+    -|++|++|+..|=+.
T Consensus        23 ~~~~~Cs~~~C~~~~~----lp~~C~~C~~~FC~~   53 (86)
T 1wfe_A           23 HKSYSCSFKGCTDVEL----VAVICPYCEKNFCLR   53 (86)
T ss_dssp             SCCEECCSTTCCCEES----SCEECTTTCCEECGG
T ss_pred             CCCCCCCCCCCCCCCC----CCCCCHHHCCCHHHC
T ss_conf             7678678777888655----751540118701053


No 264
>>2vm5_A Baculoviral IAP repeat-containing protein 1; baculoviral inhibitor of apoptosis repeat-containing 1, BIR2, BIRC1, apoptosis, polymorphism; 1.80A {Homo sapiens} (A:)
Probab=24.43  E-value=39  Score=15.22  Aligned_cols=19  Identities=5%  Similarity=-0.064  Sum_probs=13.4

Q ss_pred             EEEECC-CCCCCCCCCCCEE
Q ss_conf             442148-8872277898715
Q gi|254780459|r   18 RFYDLN-KQVIVSPYTQNSW   36 (129)
Q Consensus        18 KFYDln-k~PiiCP~CG~e~   36 (129)
                      =||=.+ .+-+.|.+||..+
T Consensus        47 GFyytg~~D~v~C~~C~~~l   66 (106)
T 2vm5_A           47 GFVFTGKQDTVQCFSCGGCL   66 (106)
T ss_dssp             TEEECSSTTCEEETTTCCEE
T ss_pred             CCEECCCCCEEEEEECCCEE
T ss_conf             98688999878970068893


No 265
>>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} (A:)
Probab=24.06  E-value=37  Score=15.33  Aligned_cols=20  Identities=0%  Similarity=-0.208  Sum_probs=14.6

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +..|-.|+.||..|.-...+
T Consensus         9 gekpy~C~~C~k~F~~~s~L   28 (46)
T 2elz_A            9 VEKPYKCEDCGKGYNRRLNL   28 (46)
T ss_dssp             CCSSCBCSSSCCBCSSHHHH
T ss_pred             CCCCEECCCCCCCCCCCCCC
T ss_conf             91882889789997455554


No 266
>>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=24.05  E-value=37  Score=15.38  Aligned_cols=20  Identities=0%  Similarity=-0.044  Sum_probs=14.5

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +..|-.|+.||..|.-...+
T Consensus         9 gekpy~C~~Cgk~F~~~s~L   28 (46)
T 2em6_A            9 GEKCYKCDVCGKEFSQSSHL   28 (46)
T ss_dssp             CCCCCBCSSSCCBCSSHHHH
T ss_pred             CCCCEECCCCCEEECCHHHH
T ss_conf             97996618849570675887


No 267
>>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=23.88  E-value=36  Score=15.45  Aligned_cols=19  Identities=0%  Similarity=0.057  Sum_probs=14.0

Q ss_pred             CCCCCCCCCCCCEECHHHH
Q ss_conf             8887227789871532331
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~   41 (129)
                      +..|-.|+.||..|.-...
T Consensus         9 gekp~~C~~Cgk~F~~~~~   27 (44)
T 2yu5_A            9 GENPFKCSKCDRVFTQRNY   27 (44)
T ss_dssp             CCCSEECSSSSCEESSSHH
T ss_pred             CCCCEECCCCCCCCCCHHH
T ss_conf             9979717988872057689


No 268
>>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} (A:136-219)
Probab=23.88  E-value=30  Score=15.88  Aligned_cols=10  Identities=10%  Similarity=0.172  Sum_probs=7.0

Q ss_pred             CCCCCCCCEE
Q ss_conf             2277898715
Q gi|254780459|r   27 IVSPYTQNSW   36 (129)
Q Consensus        27 iiCP~CG~e~   36 (129)
                      ++||+||...
T Consensus        40 piC~~cGkv~   49 (84)
T 1irx_A           40 VYCPEHRREA   49 (84)
T ss_dssp             EECTTTCCEE
T ss_pred             CHHCCCCCCC
T ss_conf             1110346566


No 269
>>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} (A:182-332)
Probab=23.78  E-value=23  Score=16.56  Aligned_cols=25  Identities=28%  Similarity=0.460  Sum_probs=17.7

Q ss_pred             CEEEECCCC-CCCCCCCCCEE-CHHHH
Q ss_conf             744214888-72277898715-32331
Q gi|254780459|r   17 KRFYDLNKQ-VIVSPYTQNSW-PLAYF   41 (129)
Q Consensus        17 ~KFYDlnk~-PiiCP~CG~e~-~~~~~   41 (129)
                      +|||||+-. ||-|=-=|..+ +...+
T Consensus        97 aRFYel~TnrPif~~RDg~~~y~~~ei  123 (151)
T 1gxm_A           97 YRFYDLNTNRGFFSDRDGSKFYDITQM  123 (151)
T ss_dssp             ESEECTTTCCBCEECTTCCEESCGGGS
T ss_pred             HHHHHHCCCCCEEECCCCEEEEEHHHC
T ss_conf             988751159953524787266303322


No 270
>>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=23.64  E-value=42  Score=15.05  Aligned_cols=19  Identities=0%  Similarity=-0.158  Sum_probs=14.1

Q ss_pred             CCCCCCCCCCCCEECHHHH
Q ss_conf             8887227789871532331
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~   41 (129)
                      +..|-.|+.||..|.-...
T Consensus         9 gekpy~C~~Cgk~F~~~s~   27 (46)
T 2em4_A            9 GQRPYECIECGKAFKTKSS   27 (46)
T ss_dssp             CSSSEECSSSCCEESSHHH
T ss_pred             CCCCEECCCCCEECCCHHH
T ss_conf             9888347986770401577


No 271
>>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=23.61  E-value=39  Score=15.22  Aligned_cols=18  Identities=0%  Similarity=0.093  Sum_probs=13.6

Q ss_pred             CCCCCCCCCCCCEECHHH
Q ss_conf             888722778987153233
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~   40 (129)
                      ...|-.|+.||..|.-..
T Consensus         9 geKp~~C~~Cgk~F~~~~   26 (46)
T 2eoy_A            9 KEKCFKCNKCEKTFSCSK   26 (46)
T ss_dssp             CSCCEECSSSCCEESSSH
T ss_pred             CCCCEECCCCCCCCCCHH
T ss_conf             987966898499836467


No 272
>>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=23.57  E-value=40  Score=15.13  Aligned_cols=20  Identities=0%  Similarity=-0.125  Sum_probs=14.9

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      ...|-.|..||..|.-...+
T Consensus         9 gekpy~C~~Cgk~F~~~s~L   28 (46)
T 2emp_A            9 GVKPYMCNECGKAFSVYSSL   28 (46)
T ss_dssp             CCCSEECSSSCCEESCHHHH
T ss_pred             CCCCCCCCCCCCCCCCHHHH
T ss_conf             88082889999803408899


No 273
>>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=23.55  E-value=41  Score=15.06  Aligned_cols=20  Identities=0%  Similarity=0.001  Sum_probs=14.4

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +..|-.|..||..|.-...+
T Consensus         9 gekpy~C~~Cgk~F~~~s~L   28 (46)
T 2ytj_A            9 GEKPYICAECGKAFTIRSNL   28 (46)
T ss_dssp             SCCSEECSSSCCEESSHHHH
T ss_pred             CCCCEECCCCCCCCCCCCCH
T ss_conf             99881678899425326152


No 274
>>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=23.52  E-value=29  Score=16.01  Aligned_cols=19  Identities=0%  Similarity=-0.234  Sum_probs=14.1

Q ss_pred             CCCCCCCCCCCCEECHHHH
Q ss_conf             8887227789871532331
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~   41 (129)
                      ...|-.|+.||..|.-..-
T Consensus         9 gekpy~C~~C~k~F~~~s~   27 (44)
T 2eoj_A            9 GENPYECCECGKVFSRKDQ   27 (44)
T ss_dssp             SCCSCEETTTTEECSSHHH
T ss_pred             CCCCEECCCCCCCCCCHHH
T ss_conf             9889778999935265155


No 275
>>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=23.49  E-value=38  Score=15.28  Aligned_cols=20  Identities=0%  Similarity=-0.127  Sum_probs=14.5

Q ss_pred             CCCCCCCCCCCCCEECHHHH
Q ss_conf             48887227789871532331
Q gi|254780459|r   22 LNKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        22 lnk~PiiCP~CG~e~~~~~~   41 (129)
                      ....|-.|..||..|.-...
T Consensus         8 tgekpy~C~~Cgk~F~~~s~   27 (46)
T 2yu8_A            8 TGEKPYKCNECGKVFTQNSH   27 (46)
T ss_dssp             CCCSSEECSSSCCEESSSHH
T ss_pred             CCCCCEECCCCCCEECCHHH
T ss_conf             89989588998983077889


No 276
>>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} (A:)
Probab=23.41  E-value=31  Score=15.81  Aligned_cols=16  Identities=0%  Similarity=-0.105  Sum_probs=10.4

Q ss_pred             CCCCCCCCCCCCEECH
Q ss_conf             8887227789871532
Q gi|254780459|r   23 NKQVIVSPYTQNSWPL   38 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~   38 (129)
                      -..|--|+.||.-|.-
T Consensus        10 ~~~~~eC~lC~vKYs~   25 (55)
T 2yrk_A           10 DGTKPECTLCGVKYSA   25 (55)
T ss_dssp             CCCCSCCTTTTCCCCS
T ss_pred             CCCCCCCCCCCEEEEE
T ss_conf             9995537632514210


No 277
>>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} (A:1-33)
Probab=23.34  E-value=31  Score=15.83  Aligned_cols=13  Identities=0%  Similarity=-0.223  Sum_probs=8.4

Q ss_pred             CCCCCCCEECHHH
Q ss_conf             2778987153233
Q gi|254780459|r   28 VSPYTQNSWPLAY   40 (129)
Q Consensus        28 iCP~CG~e~~~~~   40 (129)
                      .|+.||..|.-..
T Consensus         3 ~C~~C~k~F~~~s   15 (33)
T 1bbo_A            3 ICEECGIRXKKPS   15 (33)
T ss_dssp             BCTTTCCBCSSHH
T ss_pred             CCCCCCCCCCCHH
T ss_conf             0697969268399


No 278
>>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=23.30  E-value=40  Score=15.14  Aligned_cols=19  Identities=5%  Similarity=-0.038  Sum_probs=14.1

Q ss_pred             CCCCCCCCCCCCEECHHHH
Q ss_conf             8887227789871532331
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~   41 (129)
                      +..|-.|+.||..|.-...
T Consensus         9 gekp~~C~~Cgk~F~~~~~   27 (46)
T 2ytg_A            9 GEKPFKCGECGKSYNQRVH   27 (46)
T ss_dssp             SCCSEECTTTCCEESSSHH
T ss_pred             CCCCEECCCCCCCCCCHHH
T ss_conf             9879488999961267889


No 279
>>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=23.21  E-value=39  Score=15.19  Aligned_cols=20  Identities=0%  Similarity=-0.089  Sum_probs=14.7

Q ss_pred             CCCCCCCCCCCCCEECHHHH
Q ss_conf             48887227789871532331
Q gi|254780459|r   22 LNKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        22 lnk~PiiCP~CG~e~~~~~~   41 (129)
                      .+..|-.|+.||..|.-...
T Consensus         8 tgekpy~C~~Cgk~F~~~s~   27 (46)
T 2yth_A            8 SGEKPFQCEECGKRFTQNSH   27 (46)
T ss_dssp             CCSSSBCCSSSCCCBSSHHH
T ss_pred             CCCCCEECCCCCCCCCCHHH
T ss_conf             89799789999998588889


No 280
>>2hu9_A MERP, mercuric transport protein periplasmic component; copper chaperone, iron-sufur protein, COPZ, ATX1, ATOX1, metal transport; 1.78A {Archaeoglobus fulgidus} (A:1-64)
Probab=23.13  E-value=28  Score=16.05  Aligned_cols=10  Identities=10%  Similarity=-0.184  Sum_probs=7.3

Q ss_pred             CCCCCCCEEC
Q ss_conf             2778987153
Q gi|254780459|r   28 VSPYTQNSWP   37 (129)
Q Consensus        28 iCP~CG~e~~   37 (129)
                      .||.||++=.
T Consensus         3 ~CP~Cg~~G~   12 (64)
T 2hu9_A            3 RCPECSTEGW   12 (64)
T ss_dssp             BCTTTCCBCE
T ss_pred             CCCCCCCCCE
T ss_conf             5887887675


No 281
>>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} (B:315-381)
Probab=23.11  E-value=54  Score=14.36  Aligned_cols=30  Identities=10%  Similarity=0.149  Sum_probs=20.8

Q ss_pred             CCCC--CCCCCEEE-----ECCCC-C----------CCCCCCCCEECH
Q ss_conf             3117--88887442-----14888-7----------227789871532
Q gi|254780459|r    9 KRTC--PDTGKRFY-----DLNKQ-V----------IVSPYTQNSWPL   38 (129)
Q Consensus         9 KR~C--~~Cg~KFY-----Dlnk~-P----------iiCP~CG~e~~~   38 (129)
                      +++|  +.||.+|-     .-=|+ |          -.||+|...|..
T Consensus        12 ~~~C~n~~C~~~FH~~CL~~Wl~s~~~sr~sf~~~~g~CP~Cr~~is~   59 (67)
T 3k1l_B           12 LVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST   59 (67)
T ss_dssp             CBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred             CEECCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCH
T ss_conf             534586435872167899999983778764642144238899971224


No 282
>>2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling protein/apoptosis complex; 1.80A {Homo sapiens} PDB: 2pop_B (A:)
Probab=23.02  E-value=43  Score=14.95  Aligned_cols=20  Identities=5%  Similarity=-0.062  Sum_probs=14.9

Q ss_pred             CEEEECC-CCCCCCCCCCCEE
Q ss_conf             7442148-8872277898715
Q gi|254780459|r   17 KRFYDLN-KQVIVSPYTQNSW   36 (129)
Q Consensus        17 ~KFYDln-k~PiiCP~CG~e~   36 (129)
                      +=||=.+ .+-+.|.+||.++
T Consensus        45 aGFyytg~~D~v~C~~C~~~l   65 (94)
T 2poi_A           45 AGFLYTGEGDTVRCFSCHAAV   65 (94)
T ss_dssp             TTEEECSSTTCEEETTTCCEE
T ss_pred             CCCEECCCCCEEEECCCCCCC
T ss_conf             690877999878948668893


No 283
>>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:33-68)
Probab=22.98  E-value=35  Score=15.47  Aligned_cols=18  Identities=6%  Similarity=-0.140  Sum_probs=12.8

Q ss_pred             CCCCCCCCCCEECHHHHH
Q ss_conf             872277898715323310
Q gi|254780459|r   25 QVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        25 ~PiiCP~CG~e~~~~~~~   42 (129)
                      .|-.|+.||..|.-...+
T Consensus         2 KPy~C~~Cgk~F~~~s~L   19 (36)
T 2yt9_A            2 KPYSCPVCGLRFKRKDRM   19 (36)
T ss_dssp             CSEECSSSCCEESCHHHH
T ss_pred             CCCCCCCCCCCCCCCCCC
T ss_conf             012233332211101101


No 284
>>1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} (C:)
Probab=22.93  E-value=43  Score=14.94  Aligned_cols=18  Identities=0%  Similarity=-0.226  Sum_probs=9.8

Q ss_pred             EEECCCCCCCCCCCCCEE
Q ss_conf             421488872277898715
Q gi|254780459|r   19 FYDLNKQVIVSPYTQNSW   36 (129)
Q Consensus        19 FYDlnk~PiiCP~CG~e~   36 (129)
                      ||--..+-+.|.+||..+
T Consensus        53 yytg~~D~v~Cf~C~~~l   70 (121)
T 1g73_C           53 YALGEGDKVKCFHCGGGL   70 (121)
T ss_dssp             EECSSTTCEEETTTCCEE
T ss_pred             EEECCCCEEEEEECCCCC
T ss_conf             472688737821007744


No 285
>>2zjr_1 50S ribosomal protein L33; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (1:)
Probab=22.69  E-value=40  Score=15.13  Aligned_cols=35  Identities=20%  Similarity=0.163  Sum_probs=24.3

Q ss_pred             CCCHHH--CCCCCCCCCCCEEEECCCCCC----------CCCCCCCE
Q ss_conf             975222--783117888874421488872----------27789871
Q gi|254780459|r    1 MAKPEL--GTKRTCPDTGKRFYDLNKQVI----------VSPYTQNS   35 (129)
Q Consensus         1 MaK~el--G~KR~C~~Cg~KFYDlnk~Pi----------iCP~CG~e   35 (129)
                      |||..-  -.+-.|..||.+||=-.|.+-          -||.|+.-
T Consensus         1 MAkK~~r~~i~L~ct~c~~~nY~T~KN~~~~~~rLelkKycp~~~kh   47 (55)
T 2zjr_1            1 MAKDGPRIIVKMESSAGTGFYYTTTKNRRNTQAKLELKKYDPVAKKH   47 (55)
T ss_pred             CCCCCCCEEEEEEEECCCCCEEEECCCCCCCCCCEEEECCCCCCCCE
T ss_conf             98877817999998288898898727889995205897648788735


No 286
>>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=22.56  E-value=46  Score=14.80  Aligned_cols=21  Identities=5%  Similarity=-0.164  Sum_probs=15.0

Q ss_pred             CCCCCCCCCCCCCEECHHHHH
Q ss_conf             488872277898715323310
Q gi|254780459|r   22 LNKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        22 lnk~PiiCP~CG~e~~~~~~~   42 (129)
                      .+..|-.|+.||..|.-...+
T Consensus         8 tgekpy~C~~C~k~F~~~s~l   28 (46)
T 2emm_A            8 TGERPHKCNECGKSFIQSAHL   28 (46)
T ss_dssp             SCCCSEECSSSCCEESSHHHH
T ss_pred             CCCCCEECCCCCCCCCCHHHH
T ss_conf             899797889999710548887


No 287
>>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus HB8} (A:170-196,A:393-453,A:513-594)
Probab=22.54  E-value=22  Score=16.72  Aligned_cols=13  Identities=8%  Similarity=-0.041  Sum_probs=8.9

Q ss_pred             CCCCCCCEECHHH
Q ss_conf             2778987153233
Q gi|254780459|r   28 VSPYTQNSWPLAY   40 (129)
Q Consensus        28 iCP~CG~e~~~~~   40 (129)
                      =||.|||...-+.
T Consensus        11 ~cp~~~~~l~~~e   23 (170)
T 1ile_A           11 YCPRCGTPLSSHE   23 (170)
T ss_dssp             EETTTTEECCHHH
T ss_pred             CCCCCCCCHHHHH
T ss_conf             5423477022223


No 288
>>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=22.47  E-value=36  Score=15.42  Aligned_cols=19  Identities=11%  Similarity=0.013  Sum_probs=14.1

Q ss_pred             CCCCCCCCCCCCEECHHHH
Q ss_conf             8887227789871532331
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~   41 (129)
                      ...|-.|+.||..|.-...
T Consensus         9 gekpy~C~~Cgk~F~~~s~   27 (46)
T 2eq4_A            9 GEKLYNCKECGKSFSRAPC   27 (46)
T ss_dssp             CCCCCCBTTTTBCCSCHHH
T ss_pred             CCCCEECCCCCCCCCCHHH
T ss_conf             9889288987997563789


No 289
>>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=22.45  E-value=39  Score=15.23  Aligned_cols=20  Identities=5%  Similarity=0.031  Sum_probs=14.4

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +..|-.|+.||..|.-...+
T Consensus         9 gekpy~C~~C~k~F~~~s~L   28 (46)
T 2en9_A            9 GKKLFKCNECKKTFTQSSSL   28 (46)
T ss_dssp             SSCCCBCTTTCCBCSSHHHH
T ss_pred             CCCCCCCCCCCCEECCHHHH
T ss_conf             89893989889880626786


No 290
>>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=22.36  E-value=37  Score=15.34  Aligned_cols=19  Identities=5%  Similarity=-0.226  Sum_probs=13.9

Q ss_pred             CCCCCCCCCCCCEECHHHH
Q ss_conf             8887227789871532331
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~   41 (129)
                      +..|-.|+.||..|.-...
T Consensus         9 gekp~~C~~C~k~F~~~s~   27 (46)
T 2eom_A            9 GERGHRCSDCGKFFLQASN   27 (46)
T ss_dssp             CCSSCCCSSSCCCCSSHHH
T ss_pred             CCCCEECCCCCCCCCCCCC
T ss_conf             9588299999988756645


No 291
>>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} (A:)
Probab=22.34  E-value=31  Score=15.85  Aligned_cols=27  Identities=11%  Similarity=0.149  Sum_probs=13.3

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCEEC
Q ss_conf             178888744214888722778987153
Q gi|254780459|r   11 TCPDTGKRFYDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus        11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~   37 (129)
                      .||-|-..|.+-...+++...||+.|-
T Consensus         5 ~C~IC~~~~~~~~~~~~~~~~CgH~fc   31 (65)
T 1g25_A            5 GCPRCKTTKYRNPSLKLMVNVCGHTLC   31 (65)
T ss_dssp             CCSTTTTHHHHCSSCCEEECTTCCCEE
T ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCHHH
T ss_conf             788654223368444245665231788


No 292
>>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} (A:)
Probab=22.29  E-value=39  Score=15.24  Aligned_cols=16  Identities=6%  Similarity=0.056  Sum_probs=9.9

Q ss_pred             CCCCCCCCEECHHHHH
Q ss_conf             2277898715323310
Q gi|254780459|r   27 IVSPYTQNSWPLAYFE   42 (129)
Q Consensus        27 iiCP~CG~e~~~~~~~   42 (129)
                      -.|..|+..|.--..+
T Consensus         7 ~~C~~C~k~F~s~QAL   22 (39)
T 1njq_A            7 YTCSFCKREFRSAQAL   22 (39)
T ss_dssp             EECTTTCCEESSHHHH
T ss_pred             EECCCCCCCCCCCCCC
T ss_conf             0879988985788665


No 293
>>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} (A:133-171)
Probab=22.22  E-value=31  Score=15.85  Aligned_cols=12  Identities=8%  Similarity=0.069  Sum_probs=8.9

Q ss_pred             CCCCCCCCCC-EE
Q ss_conf             8722778987-15
Q gi|254780459|r   25 QVIVSPYTQN-SW   36 (129)
Q Consensus        25 ~PiiCP~CG~-e~   36 (129)
                      .|-.||.||. +|
T Consensus        23 EPslC~ECGGRSF   35 (39)
T 1ltl_A           23 EPSLCSECGGRSF   35 (39)
T ss_dssp             CCSCCTTTCCCCE
T ss_pred             CCCCCCCCCCCEE
T ss_conf             8887877789445


No 294
>>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=22.21  E-value=23  Score=16.61  Aligned_cols=18  Identities=11%  Similarity=0.141  Sum_probs=12.5

Q ss_pred             CCCCCCCCEECHHHHHCC
Q ss_conf             227789871532331012
Q gi|254780459|r   27 IVSPYTQNSWPLAYFEAP   44 (129)
Q Consensus        27 iiCP~CG~e~~~~~~~~~   44 (129)
                      --||.|...|....+.++
T Consensus        10 yscpvceksfsedrliks   27 (37)
T 2elo_A           10 YSCPVCEKSFSEDRLIKS   27 (37)
T ss_dssp             CEETTTTEECSSHHHHHH
T ss_pred             CCCCCHHHHCCHHHHHHH
T ss_conf             558502310126588998


No 295
>>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=22.07  E-value=43  Score=14.95  Aligned_cols=19  Identities=0%  Similarity=-0.069  Sum_probs=13.9

Q ss_pred             CCCCCCCCCCCCEECHHHH
Q ss_conf             8887227789871532331
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~   41 (129)
                      ...|-.|+.||..|.-...
T Consensus         9 gekpy~C~~Cgk~F~~~s~   27 (46)
T 2en3_A            9 GEKPFQCKECGMNFSWSCS   27 (46)
T ss_dssp             CCCSEECSSSCCEESSSHH
T ss_pred             CCCCEECCCCCCCCCCHHH
T ss_conf             9989589999984566778


No 296
>>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} (A:)
Probab=22.02  E-value=38  Score=15.31  Aligned_cols=11  Identities=9%  Similarity=0.150  Sum_probs=5.9

Q ss_pred             CCCCCCCCCEE
Q ss_conf             72277898715
Q gi|254780459|r   26 VIVSPYTQNSW   36 (129)
Q Consensus        26 PiiCP~CG~e~   36 (129)
                      .+-||.||+.+
T Consensus         9 ~v~CP~C~k~~   19 (68)
T 1lv3_A            9 TVNCPTCGKTV   19 (68)
T ss_dssp             EEECTTTCCEE
T ss_pred             EEECCCCCCCC
T ss_conf             20588999844


No 297
>>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=21.97  E-value=43  Score=14.95  Aligned_cols=20  Identities=5%  Similarity=-0.072  Sum_probs=14.3

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      ...|-.|+.||..|.-...+
T Consensus         9 gekpy~C~~Cgk~F~~~~~L   28 (46)
T 2ytf_A            9 GEKPFECSECQKAFNTKSNL   28 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHH
T ss_pred             CCCCEECCCCCCCCCCHHHH
T ss_conf             99797899989997787786


No 298
>>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=21.94  E-value=45  Score=14.86  Aligned_cols=17  Identities=0%  Similarity=0.073  Sum_probs=13.3

Q ss_pred             CCCCCCCCCCCCEECHH
Q ss_conf             88872277898715323
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLA   39 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~   39 (129)
                      +..|-.|+.||..|.-.
T Consensus         7 gekpy~C~~Cgk~F~~~   23 (44)
T 2emx_A            7 GEKPFGCSCCEKAFSSK   23 (44)
T ss_dssp             SCCCEECSSSSCEESSH
T ss_pred             CCCCEECCCCCCEECCH
T ss_conf             99898789989871652


No 299
>>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} (G:1-45)
Probab=21.89  E-value=39  Score=15.24  Aligned_cols=18  Identities=6%  Similarity=0.093  Sum_probs=12.5

Q ss_pred             CCCCCCCC--CCCCEECHHH
Q ss_conf             88872277--8987153233
Q gi|254780459|r   23 NKQVIVSP--YTQNSWPLAY   40 (129)
Q Consensus        23 nk~PiiCP--~CG~e~~~~~   40 (129)
                      +..|-.||  .||..|.-..
T Consensus        16 gekpy~C~~~~Cgk~F~~~~   35 (45)
T 1f2i_G           16 KMRPYACPVESCDRRFSRSD   35 (45)
T ss_dssp             CCCCEECSSTTBCCEESSHH
T ss_pred             CCCCCCCCCCCCCCCCCCHH
T ss_conf             98697198777889239889


No 300
>>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=21.83  E-value=41  Score=15.05  Aligned_cols=18  Identities=0%  Similarity=-0.016  Sum_probs=13.7

Q ss_pred             CCCCCCCCCCCCEECHHH
Q ss_conf             888722778987153233
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~   40 (129)
                      ...|-.|+.||..|.-..
T Consensus         7 gekpy~C~~Cgk~F~~~s   24 (42)
T 2yte_A            7 GEKPYSCAECKETFSDNN   24 (42)
T ss_dssp             SCCSCBCTTTCCBCSSHH
T ss_pred             CCCCEECCCCCCEECCHH
T ss_conf             888977899988407858


No 301
>>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=21.81  E-value=39  Score=15.21  Aligned_cols=19  Identities=5%  Similarity=-0.151  Sum_probs=14.3

Q ss_pred             CCCCCCCCCCCCEECHHHH
Q ss_conf             8887227789871532331
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~   41 (129)
                      +..|-.|+.||..|.-...
T Consensus         9 gekpy~C~~C~k~F~~~~~   27 (46)
T 2eoq_A            9 GEKPFKCDICGKSFCGRSR   27 (46)
T ss_dssp             SSCSCCCSSSCCCCSSHHH
T ss_pred             CCCCEECCCCCCCCCCHHH
T ss_conf             9878219987757444789


No 302
>>2ea9_A JW2626, hypothetical protein YFJZ; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Escherichia coli} (A:)
Probab=21.81  E-value=21  Score=16.86  Aligned_cols=15  Identities=20%  Similarity=0.337  Sum_probs=11.8

Q ss_pred             CCCHHHCCCCCCCCC
Q ss_conf             975222783117888
Q gi|254780459|r    1 MAKPELGTKRTCPDT   15 (129)
Q Consensus         1 MaK~elG~KR~C~~C   15 (129)
                      |+.++||.||.-.-|
T Consensus         1 ~~~~~WGL~~~itP~   15 (105)
T 2ea9_A            1 MSNTTWGLQRDITPR   15 (105)
T ss_dssp             CCSCHHHHTCCSSSE
T ss_pred             CCCCCCCCCCCCCCC
T ss_conf             976654766775735


No 303
>>3gpu_A DNA glycosylase; DNA glycosylase, DNA repair, damage search, base extrusion; HET: DNA 8OG; 1.62A {Geobacillus stearothermophilus} PDB: 3gpx_A* 3gq3_A* 2f5n_A 2f5o_A 2f5p_A 3gp1_A* 3gq4_A* 3gpy_A* 3gq5_A* 3gpp_A* 2f5q_A* 2f5s_A* 1l1z_A* 1l1t_A* 1l2b_A* 1l2c_A* 1l2d_A* 1r2z_A* 1r2y_A* 3jr5_A* ... (A:133-256)
Probab=21.71  E-value=41  Score=15.08  Aligned_cols=23  Identities=9%  Similarity=-0.031  Sum_probs=17.7

Q ss_pred             CCEEEECCCCCCCCCCCCCEECH
Q ss_conf             87442148887227789871532
Q gi|254780459|r   16 GKRFYDLNKQVIVSPYTQNSWPL   38 (129)
Q Consensus        16 g~KFYDlnk~PiiCP~CG~e~~~   38 (129)
                      |..|+-..|.=-.||.||+.+.-
T Consensus        86 ~~~~~vy~r~g~~C~~CG~~I~~  108 (124)
T 3gpu_A           86 QHHLYVYGRQGNPCKRCGTPIEK  108 (124)
T ss_dssp             ---CCSTTCTTSBCTTTCCBCEE
T ss_pred             CCCEEECCCCCCCCCCCCCEEEE
T ss_conf             85179818997977999998999


No 304
>>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=21.61  E-value=45  Score=14.85  Aligned_cols=19  Identities=0%  Similarity=-0.031  Sum_probs=14.2

Q ss_pred             CCCCCCCCCCCCEECHHHH
Q ss_conf             8887227789871532331
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~   41 (129)
                      +..|-.|+.||..|.-..-
T Consensus         9 gekpy~C~~Cgk~F~~~s~   27 (46)
T 2em3_A            9 GEKPYECKVCSKAFTQKAH   27 (46)
T ss_dssp             SCCSEECSSSCCEESSHHH
T ss_pred             CCCCEECCCCCCCCCCHHH
T ss_conf             9969389998996676788


No 305
>>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} (A:1-40)
Probab=21.54  E-value=39  Score=15.24  Aligned_cols=18  Identities=0%  Similarity=-0.009  Sum_probs=12.4

Q ss_pred             CCCCCCC--CCCCCEECHHH
Q ss_conf             8887227--78987153233
Q gi|254780459|r   23 NKQVIVS--PYTQNSWPLAY   40 (129)
Q Consensus        23 nk~PiiC--P~CG~e~~~~~   40 (129)
                      +..|-.|  |.||..|.-..
T Consensus         9 gekpy~C~~~~CgK~F~~~s   28 (40)
T 1tf6_A            9 VYKRYICSFADCGAAYNKNW   28 (40)
T ss_dssp             -CCCCBCSSTTTCCBCSSHH
T ss_pred             CCCCEECCCCCCCCEECCHH
T ss_conf             99897897888989829999


No 306
>>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, ATP-binding cassette, cytoplasm; HET: ADP; 3.20A {Geobacillus stearothermophilus 10} (A:715-792)
Probab=21.52  E-value=58  Score=14.16  Aligned_cols=31  Identities=6%  Similarity=0.046  Sum_probs=20.8

Q ss_pred             CCCCCC---CCEEEECCCCC---CCCCCCCC-EECHHH
Q ss_conf             117888---87442148887---22778987-153233
Q gi|254780459|r   10 RTCPDT---GKRFYDLNKQV---IVSPYTQN-SWPLAY   40 (129)
Q Consensus        10 R~C~~C---g~KFYDlnk~P---iiCP~CG~-e~~~~~   40 (129)
                      =.||.|   |...++|..-+   ++||.|+- -|.++.
T Consensus        40 G~C~~C~G~G~i~~~~~f~~~~~~~C~~C~G~Rf~~ev   77 (78)
T 2r6f_A           40 GRCEACHGDGIIKIEXHFLPDVYVPCEVCHGKRYNRET   77 (78)
T ss_dssp             TBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTG
T ss_pred             CCEECCCCCCEEECCHHHCCCCCCCCHHCCCCCCCHHH
T ss_conf             41010137624513412124434333100564200667


No 307
>>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=21.46  E-value=42  Score=15.04  Aligned_cols=18  Identities=0%  Similarity=-0.097  Sum_probs=13.9

Q ss_pred             CCCCCCCCCCCCEECHHH
Q ss_conf             888722778987153233
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~   40 (129)
                      +..|-.|+.||..|.-..
T Consensus         9 gekpy~C~~Cgk~F~~~s   26 (46)
T 2eq1_A            9 GEKPYKCNECGKAFRAHS   26 (46)
T ss_dssp             CSCCCCCTTTTCCCSSHH
T ss_pred             CCCCEECCCCCCEECCHH
T ss_conf             998968898999808888


No 308
>>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=21.37  E-value=43  Score=14.95  Aligned_cols=17  Identities=0%  Similarity=-0.121  Sum_probs=13.2

Q ss_pred             CCCCCCCCCCCCEECHH
Q ss_conf             88872277898715323
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLA   39 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~   39 (129)
                      ...|-.|+.||..|.-.
T Consensus         9 gekpy~C~~Cgk~F~~~   25 (46)
T 2epz_A            9 GEKPFDCIDCGKAFSDH   25 (46)
T ss_dssp             CCCSBCCTTTCCCBSSH
T ss_pred             CCCCEECCCCCCEECCH
T ss_conf             99791889989961888


No 309
>>1i7f_A Heat shock protein 33; HSP33, redox sensitive molecular chaperone; 2.70A {Escherichia coli} (A:179-292)
Probab=21.11  E-value=23  Score=16.57  Aligned_cols=12  Identities=17%  Similarity=0.174  Sum_probs=9.6

Q ss_pred             CCCCCCCCCEEC
Q ss_conf             722778987153
Q gi|254780459|r   26 VIVSPYTQNSWP   37 (129)
Q Consensus        26 PiiCP~CG~e~~   37 (129)
                      -|+|.+||..|.
T Consensus        82 Ev~C~FC~~~Y~   93 (114)
T 1i7f_A           82 DXHCDYCGNHYL   93 (114)
T ss_dssp             ------------
T ss_pred             EEEEECCCCEEE
T ss_conf             999147798898


No 310
>>1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D- structure; 3.30A {Thermus aquaticus} (D:1-100,D:249-270)
Probab=21.11  E-value=36  Score=15.43  Aligned_cols=28  Identities=7%  Similarity=-0.152  Sum_probs=19.5

Q ss_pred             CCCCCCCCCEEEECCCCCCCCCCCCCEECH
Q ss_conf             311788887442148887227789871532
Q gi|254780459|r    9 KRTCPDTGKRFYDLNKQVIVSPYTQNSWPL   38 (129)
Q Consensus         9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~   38 (129)
                      ..+|..||.++=  ++.-..|-.||.+|-.
T Consensus        55 ~~~C~tC~~~~~--~~~~~~c~~CG~~~l~   82 (122)
T 1hqm_D           55 DYECACGKYKRQ--RFEGKVCERCGVEVTR   82 (122)
T ss_dssp             ----------------CCSCSSSSSSSSCC
T ss_pred             CCCCCCCCCCCC--CCCCCCCCCCCCEEEE
T ss_conf             760526652331--5598388999985005


No 311
>>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} (A:)
Probab=21.10  E-value=59  Score=14.12  Aligned_cols=18  Identities=11%  Similarity=0.132  Sum_probs=10.3

Q ss_pred             CCCCCCCCCCEECHHHHH
Q ss_conf             872277898715323310
Q gi|254780459|r   25 QVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        25 ~PiiCP~CG~e~~~~~~~   42 (129)
                      .++.||.|+..+.+..+.
T Consensus        52 ~~~~CP~Cr~~~~~~~l~   69 (79)
T 2egp_A           52 GKSSCPVCGISYSFEHLQ   69 (79)
T ss_dssp             CCCCCSSSCCCCCSSGGG
T ss_pred             CCCCCCCCCCCCCHHHCC
T ss_conf             767289888987745286


No 312
>>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} (A:39-72)
Probab=21.06  E-value=47  Score=14.71  Aligned_cols=18  Identities=0%  Similarity=-0.014  Sum_probs=12.6

Q ss_pred             CCCCCCCC--CCCCEECHHH
Q ss_conf             88872277--8987153233
Q gi|254780459|r   23 NKQVIVSP--YTQNSWPLAY   40 (129)
Q Consensus        23 nk~PiiCP--~CG~e~~~~~   40 (129)
                      +-.|-.||  .||..|.-..
T Consensus         6 gekPy~C~~~~C~k~F~~~~   25 (34)
T 2epa_A            6 GEKPFSCSWKGCERRFARSD   25 (34)
T ss_dssp             SSCSEECCCTTCCCEESSHH
T ss_pred             CCCCCCCCCCCCCCEEECHH
T ss_conf             12013430158898874899


No 313
>>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* (A:33-63)
Probab=20.86  E-value=42  Score=15.03  Aligned_cols=19  Identities=0%  Similarity=-0.150  Sum_probs=12.5

Q ss_pred             CCCCCCC--CCCCEECHHHHH
Q ss_conf             8872277--898715323310
Q gi|254780459|r   24 KQVIVSP--YTQNSWPLAYFE   42 (129)
Q Consensus        24 k~PiiCP--~CG~e~~~~~~~   42 (129)
                      -.|-+|+  .||..|.-..-+
T Consensus         2 ekPy~C~~~~CgK~F~~~~~L   22 (31)
T 2jp9_A            2 EKPYQCDFKDCERRFSRSDQL   22 (31)
T ss_dssp             TCCEECCSTTCCCEESSHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCC
T ss_conf             520011111111111122111


No 314
>>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=20.76  E-value=49  Score=14.62  Aligned_cols=18  Identities=6%  Similarity=0.106  Sum_probs=13.7

Q ss_pred             CCCCCCCCCCCCEECHHH
Q ss_conf             888722778987153233
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~   40 (129)
                      ...|-.|+.||..|.-..
T Consensus         9 gekpy~C~~Cgk~F~~~s   26 (46)
T 2emj_A            9 GEKPFECAECGKSFSISS   26 (46)
T ss_dssp             CCCSEECSSSSCEESSHH
T ss_pred             CCCCEECCCCCCCCCCHH
T ss_conf             967948998898355488


No 315
>>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=20.73  E-value=44  Score=14.92  Aligned_cols=19  Identities=0%  Similarity=-0.111  Sum_probs=13.8

Q ss_pred             CCCCCCCCCCCCEECHHHH
Q ss_conf             8887227789871532331
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~   41 (129)
                      +..|-.|+.||..|.-...
T Consensus         9 gekpy~C~~Cgk~F~~~~~   27 (46)
T 2yti_A            9 GEKPYKCNECGKVFTQNSH   27 (46)
T ss_dssp             CCCTTCCSSSCCCCSSHHH
T ss_pred             CCCCEECCCCCCEECCHHH
T ss_conf             9989778999983077899


No 316
>>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} (A:)
Probab=20.65  E-value=38  Score=15.27  Aligned_cols=33  Identities=3%  Similarity=-0.136  Sum_probs=25.5

Q ss_pred             CCCCCCCCCEEEECCCCCCCCCCCCCEECHHHH
Q ss_conf             311788887442148887227789871532331
Q gi|254780459|r    9 KRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus         9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~   41 (129)
                      -+.|+=|-.-|-+-...|..|.+|+..|-..=+
T Consensus         6 ~~~C~IC~~~~~~~~~~pc~~~~C~H~fh~~Ci   38 (60)
T 1vyx_A            6 VPVCWICNEELGNERFRACGCTGELENVHRSCL   38 (60)
T ss_dssp             CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHH
T ss_pred             CCCCEECCCCCCCCCEEECCCCCCCCEECHHHH
T ss_conf             999950487166553021134897567869998


No 317
>>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=20.64  E-value=48  Score=14.66  Aligned_cols=20  Identities=0%  Similarity=-0.016  Sum_probs=14.7

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      ...|-.|..||..|.-...+
T Consensus         9 gekpy~C~~Cgk~F~~~s~l   28 (46)
T 2eon_A            9 GEKPYKCQVCGKAFRVSSHL   28 (46)
T ss_dssp             SCCSCBCSSSCCBCSSHHHH
T ss_pred             CCCCEECCCCCEECCCCCCC
T ss_conf             98881889898263456675


No 318
>>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* (A:1-32)
Probab=20.62  E-value=45  Score=14.85  Aligned_cols=19  Identities=5%  Similarity=-0.022  Sum_probs=12.6

Q ss_pred             CCCCCCCC--CCCCEECHHHH
Q ss_conf             88872277--89871532331
Q gi|254780459|r   23 NKQVIVSP--YTQNSWPLAYF   41 (129)
Q Consensus        23 nk~PiiCP--~CG~e~~~~~~   41 (129)
                      +..|-+|+  +||..|.-..-
T Consensus         3 gekpf~C~~~gC~K~F~~~~~   23 (32)
T 2jp9_A            3 EKRPFMCAYPGCNKRYFKLSH   23 (32)
T ss_dssp             SSCCBCCCSTTSCCCBSCHHH
T ss_pred             CCCCEECCCCCCCCCCCCHHH
T ss_conf             888878889997999097576


No 319
>>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=20.62  E-value=38  Score=15.31  Aligned_cols=18  Identities=6%  Similarity=-0.047  Sum_probs=13.8

Q ss_pred             CCCCCCCCCCCCEECHHH
Q ss_conf             888722778987153233
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~   40 (129)
                      +..|-.|+.||..|.-..
T Consensus         9 gekp~~C~~Cgk~F~~~s   26 (45)
T 2epu_A            9 GQKPFECTHCGKSFRAKG   26 (45)
T ss_dssp             SCCSEEETTTTEEESSHH
T ss_pred             CCCCEECCCCCCEECCCH
T ss_conf             988975599992725736


No 320
>>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=20.56  E-value=50  Score=14.55  Aligned_cols=18  Identities=0%  Similarity=-0.140  Sum_probs=13.7

Q ss_pred             CCCCCCCCCCCCEECHHH
Q ss_conf             888722778987153233
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~   40 (129)
                      ...|-.|+.||..|.-..
T Consensus         9 gekpy~C~~Cgk~F~~~s   26 (46)
T 2ene_A            9 GEKPYKCNECGKVFRHNS   26 (46)
T ss_dssp             CSSSEECSSSCCEESSHH
T ss_pred             CCCCEECCCCCCCCCCHH
T ss_conf             997968999999978888


No 321
>>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae} (A:1-91)
Probab=20.53  E-value=29  Score=15.98  Aligned_cols=25  Identities=24%  Similarity=0.247  Sum_probs=13.8

Q ss_pred             CCCCCCCCCCEE-EE-CCCCCCCCCCCCC
Q ss_conf             831178888744-21-4888722778987
Q gi|254780459|r    8 TKRTCPDTGKRF-YD-LNKQVIVSPYTQN   34 (129)
Q Consensus         8 ~KR~C~~Cg~KF-YD-lnk~PiiCP~CG~   34 (129)
                      .=|.|..|+.-- ++ |.  -=.||.||.
T Consensus         3 ~lrAC~~C~~I~t~~qF~--~~gCpnC~~   29 (91)
T 2exu_A            3 SERACMLCGIVQTTNEFN--RDGCPNCQG   29 (91)
T ss_dssp             CEEEETTTCBEEEHHHHH--HHCCTTTHH
T ss_pred             CCCHHHHCCCCCCHHHHC--CCCCCCCCC
T ss_conf             471555199530242531--379999700


No 322
>>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} (A:)
Probab=20.51  E-value=25  Score=16.44  Aligned_cols=10  Identities=20%  Similarity=0.564  Sum_probs=5.6

Q ss_pred             HCCCCCCCCC
Q ss_conf             2783117888
Q gi|254780459|r    6 LGTKRTCPDT   15 (129)
Q Consensus         6 lG~KR~C~~C   15 (129)
                      .|.+.+|.||
T Consensus        13 YGA~viCASC   22 (111)
T 1xg8_A           13 YGADVICASC   22 (111)
T ss_dssp             EECSSCCGGG
T ss_pred             ECCCCCCHHH
T ss_conf             7445404542


No 323
>>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens} (A:)
Probab=20.49  E-value=61  Score=14.03  Aligned_cols=29  Identities=10%  Similarity=0.086  Sum_probs=21.2

Q ss_pred             CCHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEE
Q ss_conf             75222783117888874421488872277898715
Q gi|254780459|r    2 AKPELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSW   36 (129)
Q Consensus         2 aK~elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~   36 (129)
                      ++......+.|..||.      .....|+.|+..+
T Consensus        10 ~~~~~~~~~~C~~C~~------~~~~~C~~C~~v~   38 (64)
T 2odd_A           10 LYFQGDSSESCWNCGR------KASETCSGCNTAR   38 (64)
T ss_dssp             -----CCSSSCTTTSS------CCCEEETTTSCCE
T ss_pred             EEECCCCCCCCCCCCC------CCCCCCCCCCCEE
T ss_conf             1665888976767994------3138489999874


No 324
>>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=20.48  E-value=51  Score=14.48  Aligned_cols=20  Identities=0%  Similarity=-0.164  Sum_probs=14.5

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +..|-.|..||..|.-...+
T Consensus         9 gekpy~C~~Cgk~F~~~s~l   28 (46)
T 2emf_A            9 GGKHFECTECGKAFTRKSTL   28 (46)
T ss_dssp             SSCCEECSSSCCEESCHHHH
T ss_pred             CCCCEECCCCCCCCCCHHHH
T ss_conf             99883379867524126788


No 325
>>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} (A:1-29,A:240-365)
Probab=20.48  E-value=34  Score=15.58  Aligned_cols=11  Identities=55%  Similarity=1.099  Sum_probs=9.1

Q ss_pred             CCCEEEECCCC
Q ss_conf             88744214888
Q gi|254780459|r   15 TGKRFYDLNKQ   25 (129)
Q Consensus        15 Cg~KFYDlnk~   25 (129)
                      -|+|||-|||-
T Consensus        16 ~~~~~~~~~~~   26 (155)
T 2b3y_A           16 PGKKFFNLNKL   26 (155)
T ss_dssp             TTCEEECGGGG
T ss_pred             CCCEEECHHHH
T ss_conf             87557457883


No 326
>>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=20.34  E-value=47  Score=14.74  Aligned_cols=19  Identities=0%  Similarity=0.006  Sum_probs=14.0

Q ss_pred             CCCCCCCCCCCCEECHHHH
Q ss_conf             8887227789871532331
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~   41 (129)
                      +..|-.|+.||..|.-...
T Consensus         9 gekpy~C~~Cgk~F~~~s~   27 (46)
T 2ytq_A            9 GEKPYGCSECGKAFSSKSY   27 (46)
T ss_dssp             CCCSCBCSSSCCBCSCHHH
T ss_pred             CCCCEECCCCCCCCCCHHH
T ss_conf             9899788999998388889


No 327
>>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=20.33  E-value=46  Score=14.77  Aligned_cols=18  Identities=6%  Similarity=-0.020  Sum_probs=13.5

Q ss_pred             CCCCCCCCCCCCEECHHH
Q ss_conf             888722778987153233
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~   40 (129)
                      ...|-.|+.||..|.-..
T Consensus         9 gekpy~C~~C~k~F~~~s   26 (46)
T 2eov_A            9 GEKPYKCSDCGKSFTWKS   26 (46)
T ss_dssp             SCCSCBCSSSCCBCSSHH
T ss_pred             CCCCEEECCCCEEEEECC
T ss_conf             989988289997634446


No 328
>>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=20.29  E-value=38  Score=15.29  Aligned_cols=35  Identities=14%  Similarity=0.253  Sum_probs=24.4

Q ss_pred             CCCCCCCCCCEEEECCC--CCCCCCCCCCEECHHHHH
Q ss_conf             83117888874421488--872277898715323310
Q gi|254780459|r    8 TKRTCPDTGKRFYDLNK--QVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDlnk--~PiiCP~CG~e~~~~~~~   42 (129)
                      .--.|+-|.-.|.+-.+  .++++..||+.|-..=+.
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fh~~Ci~   50 (69)
T 2ea6_A           14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLR   50 (69)
T ss_dssp             CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHH
T ss_pred             CCCCCCCCCHHHHCCCCCCCCEEECCCCCEECHHHHH
T ss_conf             9989940796562602357775867789823589999


No 329
>>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=20.23  E-value=48  Score=14.69  Aligned_cols=20  Identities=0%  Similarity=-0.177  Sum_probs=14.6

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      ...|-.|..||..|.-...+
T Consensus         9 geKp~~C~~C~k~F~~~~~L   28 (46)
T 2eow_A            9 GEKPYKCNECGKAFRARSSL   28 (46)
T ss_dssp             CCCCEECTTSCCEESSHHHH
T ss_pred             CCCCEECCCCCCCCCCHHHH
T ss_conf             99794789989982888998


No 330
>>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=20.17  E-value=53  Score=14.40  Aligned_cols=20  Identities=0%  Similarity=-0.202  Sum_probs=14.5

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +..|-.|..||..|.-...+
T Consensus         9 gekpy~C~~Cgk~F~~~s~L   28 (46)
T 2ema_A            9 GEKRYKCNECGKVFSRNSQL   28 (46)
T ss_dssp             TSCCEECSSSCCEESSHHHH
T ss_pred             CCCCEECCCCCEECCCCCCC
T ss_conf             98997638898105333401


No 331
>>3hl5_A Baculoviral IAP repeat-containing protein 4; BIR, apoptosis, small molecule drug discovery, structure-based drug design, cytoplasm, ligase; HET: 9JZ; 1.80A {Homo sapiens} PDB: 1nw9_A 2vsl_A (A:)
Probab=20.16  E-value=53  Score=14.38  Aligned_cols=18  Identities=17%  Similarity=0.207  Sum_probs=13.0

Q ss_pred             EEECC-CCCCCCCCCCCEE
Q ss_conf             42148-8872277898715
Q gi|254780459|r   19 FYDLN-KQVIVSPYTQNSW   36 (129)
Q Consensus        19 FYDln-k~PiiCP~CG~e~   36 (129)
                      ||=.+ .+-+.|.+||..+
T Consensus        38 Fyytg~~D~v~C~~C~~~l   56 (95)
T 3hl5_A           38 FYALGEGDKVKCFHCGGGL   56 (95)
T ss_dssp             EEECSSTTCEEETTTCCEE
T ss_pred             CEECCCCCEEEECCCCCCC
T ss_conf             8785999988966258891


No 332
>>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=20.05  E-value=47  Score=14.74  Aligned_cols=20  Identities=0%  Similarity=-0.152  Sum_probs=14.5

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +..|-.|+.||..|.-...+
T Consensus         9 gekpy~C~~Cgk~F~~~~~L   28 (46)
T 2enf_A            9 GEKPYKCNECGKVFTQNSHL   28 (46)
T ss_dssp             CCCSCBCSSSCCBCSSHHHH
T ss_pred             CCCCEECCCCCCCCCCHHHH
T ss_conf             99896889989840778887


Done!