HHsearch results for GI: 254780459 and protein with PDBid: 3k1f_M

>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=92.87  E-value=0.032  Score=33.17  Aligned_cols=32  Identities=16%  Similarity=0.194  Sum_probs=26.2

Q ss_pred             HCCCCCCCCCCCE---E-EECCCCCCCCCCCCCEEC
Q ss_conf             2783117888874---4-214888722778987153
Q gi|254780459|r    6 LGTKRTCPDTGKR---F-YDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus         6 lG~KR~C~~Cg~K---F-YDlnk~PiiCP~CG~e~~   37 (129)
                      +-++.+||.||.+   + ||-.+--+||-.||..+.
T Consensus        18 lNitl~CPeCGS~~t~IVeD~s~GEiVCsdCGLVIE   53 (197)
T 3k1f_M           18 LNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLS   53 (197)
T ss_dssp             CCCCCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCC
T ss_pred             CEEEEECCCCCCCCCEEEEECCCCCEECCCCCEEEC
T ss_conf             865468999999899898979989689714892924