HHsearch results for GI: 254780459 and protein with PDBid: 3k1f_M
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=92.87 E-value=0.032 Score=33.17 Aligned_cols=32 Identities=16% Similarity=0.194 Sum_probs=26.2
Q ss_pred HCCCCCCCCCCCE---E-EECCCCCCCCCCCCCEEC
Q ss_conf 2783117888874---4-214888722778987153
Q gi|254780459|r 6 LGTKRTCPDTGKR---F-YDLNKQVIVSPYTQNSWP 37 (129)
Q Consensus 6 lG~KR~C~~Cg~K---F-YDlnk~PiiCP~CG~e~~ 37 (129)
+-++.+||.||.+ + ||-.+--+||-.||..+.
T Consensus 18 lNitl~CPeCGS~~t~IVeD~s~GEiVCsdCGLVIE 53 (197)
T 3k1f_M 18 LNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (197)
T ss_dssp CCCCCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCC
T ss_pred CEEEEECCCCCCCCCEEEEECCCCCEECCCCCEEEC
T ss_conf 865468999999899898979989689714892924