Query         gi|254780459|ref|YP_003064872.1| hypothetical protein CLIBASIA_01720 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 129
No_of_seqs    108 out of 275
Neff          6.5 
Searched_HMMs 23785
Date          Mon May 30 11:24:27 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780459.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2akl_A PHNA-like protein PA012  95.5  0.0074 3.1E-07   37.1   2.9   32    9-40     27-58  (138)
  2 2jz8_A Uncharacterized protein  95.4  0.0077 3.2E-07   37.0   2.8   28   17-44     38-66  (87)
  3 1pft_A TFIIB, PFTFIIBN; N-term  95.0  0.0082 3.5E-07   36.8   2.0   33    7-39      3-37  (50)
  4 2f9y_B Acetyl-coenzyme A carbo  94.1   0.011 4.5E-07   36.1   0.8   32    7-38     22-55  (304)
  5 2a6h_D DNA-directed RNA polyme  93.9   0.017   7E-07   34.9   1.6   31   11-43     57-87  (1524)
  6 1dvp_A HRS, hepatocyte growth   93.8   0.033 1.4E-06   33.1   2.8   35    2-37    154-188 (220)
  7 1lko_A Rubrerythrin all-iron(I  93.7   0.013 5.4E-07   35.6   0.7   31    4-35    150-180 (191)
  8 2jvm_A Uncharacterized protein  93.5   0.027 1.1E-06   33.7   2.0   25   17-41     42-68  (80)
  9 3k7a_M Transcription initiatio  93.3   0.034 1.4E-06   33.0   2.3   34    4-37     16-53  (345)
 10 1dl6_A Transcription factor II  93.2   0.043 1.8E-06   32.4   2.8   39    2-40      4-44  (58)
 11 2apo_B Ribosome biogenesis pro  93.2   0.036 1.5E-06   32.9   2.3   22    9-35      6-27  (60)
 12 2kdx_A HYPA, hydrogenase/ureas  93.1   0.042 1.8E-06   32.4   2.5   27    9-35     73-99  (119)
 13 3k1f_M Transcription initiatio  92.9   0.032 1.3E-06   33.2   1.6   32    6-37     18-53  (197)
 14 2f9i_B Acetyl-coenzyme A carbo  92.6    0.03 1.2E-06   33.4   1.1   29   10-38     31-61  (285)
 15 2jrr_A Uncharacterized protein  92.4   0.034 1.4E-06   33.0   1.2   22   17-38     29-52  (67)
 16 2gmg_A Hypothetical protein PF  92.0   0.053 2.2E-06   31.8   1.8   27   11-37     69-95  (105)
 17 1vd4_A Transcription initiatio  91.4     0.1 4.4E-06   30.0   2.8   28   11-38     16-51  (62)
 18 2pzi_A Probable serine/threoni  91.4   0.077 3.2E-06   30.8   2.1   32    7-38     32-68  (681)
 19 2ct7_A Ring finger protein 31;  91.3     0.1 4.4E-06   30.0   2.8   30    8-37     24-54  (86)
 20 3a43_A HYPD, hydrogenase nicke  91.2    0.08 3.3E-06   30.7   2.1   27    9-35     70-116 (139)
 21 3cng_A Nudix hydrolase; struct  91.1   0.074 3.1E-06   30.9   1.8   30    7-36      1-35  (189)
 22 1vk6_A NADH pyrophosphatase; 1  91.0    0.13 5.6E-06   29.4   3.0   31    8-38    106-137 (269)
 23 3flo_B DNA polymerase alpha ca  90.9    0.08 3.4E-06   30.7   1.9   34    8-41     21-64  (206)
 24 2aus_D NOP10, ribosome biogene  90.9   0.092 3.9E-06   30.4   2.1   23    8-35      4-26  (60)
 25 3bvo_A CO-chaperone protein HS  90.9   0.098 4.1E-06   30.2   2.3   30   10-39     11-40  (207)
 26 3na7_A HP0958; flagellar bioge  90.4   0.074 3.1E-06   30.9   1.3   29    8-36    197-232 (256)
 27 2jr6_A UPF0434 protein NMA0874  90.0    0.11 4.4E-06   30.0   1.8   30   10-39      9-39  (68)
 28 3ndi_A Methyltransferase; S-ad  88.5    0.12   5E-06   29.7   1.2   27   10-36     13-63  (416)
 29 1z60_A TFIIH basal transcripti  88.5     0.1 4.3E-06   30.1   0.8   33    4-38     10-42  (59)
 30 1twf_L ABC10-alpha, DNA-direct  88.0     0.3 1.3E-05   27.2   3.0   32    5-36     24-55  (70)
 31 2ctd_A Zinc finger protein 512  87.4    0.28 1.2E-05   27.4   2.5   36    8-43     33-79  (96)
 32 3htk_C E3 SUMO-protein ligase   86.8     0.2 8.6E-06   28.3   1.5   31   11-45    183-213 (267)
 33 3h0g_L DNA-directed RNA polyme  86.5     0.4 1.7E-05   26.5   2.9   33    4-36     16-48  (63)
 34 2r6f_A Excinuclease ABC subuni  86.1    0.41 1.7E-05   26.4   2.8   36    6-41    264-311 (972)
 35 2waq_P DNA-directed RNA polyme  85.8    0.29 1.2E-05   27.3   1.9   28    9-36      3-33  (48)
 36 2jny_A Uncharacterized BCR; st  85.8    0.44 1.9E-05   26.2   2.8   37    3-39      4-41  (67)
 37 2wbt_A B-129; zinc finger; 2.7  84.4    0.41 1.7E-05   26.4   2.2   33   10-42     75-116 (129)
 38 2nn6_I 3'-5' exoribonuclease C  84.2    0.36 1.5E-05   26.7   1.8   33    2-35    161-194 (209)
 39 2pk7_A Uncharacterized protein  84.1    0.35 1.5E-05   26.8   1.7   30   10-39      9-39  (69)
 40 1zbd_B Rabphilin-3A; G protein  84.1    0.42 1.8E-05   26.3   2.1   28    9-36     55-82  (134)
 41 2j01_5 50S ribosomal protein L  84.0    0.44 1.9E-05   26.2   2.2   21   10-34     31-51  (60)
 42 2js4_A UPF0434 protein BB2007;  83.6    0.42 1.8E-05   26.3   2.0   32    8-39      7-39  (70)
 43 2hf1_A Tetraacyldisaccharide-1  83.4     0.4 1.7E-05   26.5   1.7   30   10-39      9-39  (68)
 44 1z2q_A LM5-1; membrane protein  82.6    0.77 3.3E-05   24.7   3.0   38    1-39     10-50  (84)
 45 1q14_A HST2 protein; histone d  82.3    0.47   2E-05   26.0   1.8   31    9-39    144-184 (361)
 46 3m7n_A Putative uncharacterize  82.2    0.73 3.1E-05   24.8   2.7   35    1-36    131-166 (179)
 47 2k4x_A 30S ribosomal protein S  82.1    0.61 2.6E-05   25.3   2.3   29    8-36     17-47  (55)
 48 2yw8_A RUN and FYVE domain-con  81.8     0.7   3E-05   25.0   2.5   29    8-37     18-46  (82)
 49 2adr_A ADR1; transcription reg  81.8    0.59 2.5E-05   25.4   2.1   35    9-43      2-47  (60)
 50 3glr_A NAD-dependent deacetyla  81.4    0.41 1.7E-05   26.4   1.2   31    9-39    139-176 (285)
 51 2gqj_A Zinc finger protein KIA  80.9    0.22 9.3E-06   28.0  -0.3   36    8-43     23-71  (98)
 52 1joc_A EEA1, early endosomal a  80.6    0.82 3.5E-05   24.5   2.5   27   10-37     70-96  (125)
 53 1y02_A CARP2, FYVE-ring finger  80.5    0.58 2.4E-05   25.5   1.7   33    5-38     15-47  (120)
 54 1bbo_A Human enhancer-binding   79.8     0.8 3.4E-05   24.6   2.2   34    9-42      1-45  (57)
 55 1j8f_A SIRT2, sirtuin 2, isofo  79.6    0.57 2.4E-05   25.5   1.4   31    9-39    159-198 (323)
 56 2ztg_A Alanyl-tRNA synthetase;  79.3    0.75 3.1E-05   24.8   2.0   30    5-34     15-47  (739)
 57 1vk6_A NADH pyrophosphatase; 1  79.2    0.26 1.1E-05   27.6  -0.4   28    4-36    120-147 (269)
 58 2zjr_Z 50S ribosomal protein L  79.1    0.64 2.7E-05   25.2   1.6   21   10-34     31-51  (60)
 59 1qxf_A GR2, 30S ribosomal prot  79.0     1.6 6.8E-05   22.8   3.6   29    8-36      6-36  (66)
 60 1m2k_A Silent information regu  78.7    0.95   4E-05   24.2   2.3   32    9-40    121-156 (249)
 61 2zze_A Alanyl-tRNA synthetase;  78.3    0.86 3.6E-05   24.4   2.0   30    5-34     12-44  (752)
 62 2gnr_A Conserved hypothetical   77.8    0.75 3.1E-05   24.8   1.6   23   10-35     48-70  (145)
 63 1q1a_A HST2 protein; ternary c  77.4    0.91 3.8E-05   24.3   1.9   31    9-39    136-176 (289)
 64 2yu4_A E3 SUMO-protein ligase   77.3    0.73 3.1E-05   24.8   1.4   29   10-42      8-36  (94)
 65 1x4u_A Zinc finger, FYVE domai  77.2     1.1 4.8E-05   23.7   2.4   28    9-37     14-41  (84)
 66 3ir9_A Peptide chain release f  77.1     1.3 5.6E-05   23.3   2.7   29    9-37     78-114 (166)
 67 3cc2_Z 50S ribosomal protein L  76.9     1.1 4.5E-05   23.8   2.2   29    7-37     58-89  (116)
 68 3h0g_I DNA-directed RNA polyme  76.6     1.9 8.1E-05   22.3   3.4   30   10-39      5-39  (113)
 69 2yt9_A Zinc finger-containing   76.6     1.4 5.8E-05   23.2   2.7   30   11-40      9-49  (95)
 70 1vfy_A Phosphatidylinositol-3-  76.4     1.4 5.9E-05   23.1   2.7   35    3-38      5-39  (73)
 71 1x6h_A Transcriptional repress  76.1     1.4 5.9E-05   23.1   2.6   33   10-42     16-63  (86)
 72 2avu_E Flagellar transcription  76.1     1.3 5.5E-05   23.3   2.4   24   10-33    135-161 (192)
 73 1ltl_A DNA replication initiat  75.9     1.3 5.4E-05   23.4   2.3   28   10-37    135-168 (279)
 74 2cot_A Zinc finger protein 435  75.7     1.4 5.9E-05   23.1   2.5   34    9-42     18-62  (77)
 75 2fiy_A Protein FDHE homolog; F  75.1     1.1 4.6E-05   23.8   1.8   35    4-38    177-220 (309)
 76 1llm_C Chimera of ZIF23-GCN4;   75.0     1.4 5.7E-05   23.2   2.3   33   10-42      4-47  (88)
 77 2zkr_z 60S ribosomal protein L  74.2    0.76 3.2E-05   24.7   0.8   29    8-38     35-66  (92)
 78 2kpi_A Uncharacterized protein  73.4     1.3 5.4E-05   23.4   1.8   32    8-39      9-41  (56)
 79 2ct1_A Transcriptional repress  73.2     1.8 7.6E-05   22.4   2.6   34    9-42     15-61  (77)
 80 1x6e_A Zinc finger protein 24;  73.1     1.7   7E-05   22.7   2.4   34    9-42     14-58  (72)
 81 2kmk_A Zinc finger protein GFI  73.0     1.7   7E-05   22.7   2.3   29   11-39      3-42  (82)
 82 2dlk_A Novel protein; ZF-C2H2   72.5     1.3 5.4E-05   23.3   1.7   32   11-42     11-56  (79)
 83 3jwp_A Transcriptional regulat  72.2     1.6 6.7E-05   22.8   2.1   30    9-39    129-169 (265)
 84 1s5p_A NAD-dependent deacetyla  70.6     1.2 4.9E-05   23.6   1.1   31    9-39    113-147 (235)
 85 2hjh_A NAD-dependent histone d  70.3     1.2 5.2E-05   23.5   1.1   26    9-34    161-193 (354)
 86 1twf_I B12.6, DNA-directed RNA  70.2     2.1 8.8E-05   22.1   2.3   31    9-39      4-39  (122)
 87 3l11_A E3 ubiquitin-protein li  70.2     2.2 9.2E-05   21.9   2.4   34    1-39      3-40  (115)
 88 3lu0_D DNA-directed RNA polyme  70.0     1.6 6.8E-05   22.8   1.7   21   15-36     72-92  (1407)
 89 1wfk_A Zinc finger, FYVE domai  69.6     2.5  0.0001   21.6   2.6   31    7-38      7-37  (88)
 90 1wjp_A Zinc finger protein 295  69.3     1.1 4.4E-05   23.9   0.6   27   11-37     18-53  (107)
 91 1x5w_A Zinc finger protein 64,  69.1     2.7 0.00011   21.4   2.7   35    8-42      8-53  (70)
 92 2waq_B DNA-directed RNA polyme  69.1     2.2 9.2E-05   21.9   2.2   26   10-35   1062-1088(1131)
 93 2bay_A PRE-mRNA splicing facto  68.4     1.6 6.7E-05   22.8   1.4   34    7-44      1-34  (61)
 94 2drp_A Protein (tramtrack DNA-  67.9     2.5  0.0001   21.6   2.3   31   10-40     11-54  (66)
 95 1l1o_C Replication protein A 7  67.9     1.9 8.2E-05   22.3   1.8   29    9-37     43-73  (181)
 96 2yto_A Zinc finger protein 484  67.0     2.1   9E-05   22.0   1.8   14   25-38     11-24  (46)
 97 2ecy_A TNF receptor-associated  67.0     2.6 0.00011   21.5   2.3   33    5-42     11-43  (66)
 98 2ep1_A Zinc finger protein 484  66.3     2.1 8.8E-05   22.1   1.7   13   25-37     11-23  (46)
 99 2eps_A POZ-, at HOOK-, and zin  66.2     3.2 0.00014   20.9   2.6   32    6-37      9-52  (54)
100 2kwq_A Protein MCM10 homolog;   66.1     3.3 0.00014   20.9   2.6   39    8-47     45-87  (92)
101 3nw0_A Non-structural maintena  66.1     2.9 0.00012   21.2   2.4   27   11-37    195-228 (238)
102 1vq8_Z 50S ribosomal protein L  65.8     1.7 7.1E-05   22.6   1.1   29    7-37     25-56  (83)
103 4rxn_A Rubredoxin; electron tr  65.8     2.6 0.00011   21.5   2.1   26    9-35      3-45  (54)
104 3jyw_9 60S ribosomal protein L  65.8     2.9 0.00012   21.2   2.3   29    8-38     25-56  (72)
105 2i13_A AART; DNA binding, zinc  65.7     2.9 0.00012   21.2   2.3   10   27-36    162-171 (190)
106 1f2i_G Fusion of N-terminal 17  65.6       3 0.00013   21.1   2.4   33   10-42     20-65  (73)
107 3mpx_A FYVE, rhogef and PH dom  65.4     1.1 4.4E-05   23.9   0.0   26   10-36    376-401 (434)
108 2dlq_A GLI-kruppel family memb  65.4     3.8 0.00016   20.4   2.9   35    8-42     65-110 (124)
109 2qpz_A Naphthalene 1,2-dioxyge  65.1     2.5  0.0001   21.6   1.8   30   10-39     42-73  (103)
110 3o9x_A Uncharacterized HTH-typ  64.7     2.4  0.0001   21.7   1.7   28   12-39      5-50  (133)
111 3lrq_A E3 ubiquitin-protein li  64.5     2.8 0.00012   21.3   2.0   25   11-39     24-48  (100)
112 2wbs_A Krueppel-like factor 4;  64.5     3.5 0.00015   20.7   2.5   33    9-41     37-80  (89)
113 6rxn_A Rubredoxin; electron tr  64.4     2.9 0.00012   21.2   2.1   27    8-35      3-39  (46)
114 1ryq_A DNA-directed RNA polyme  63.8     2.5  0.0001   21.6   1.7   23    8-35     10-32  (69)
115 1e8j_A Rubredoxin; iron-sulfur  63.5     3.4 0.00014   20.7   2.3   26    9-35      3-45  (52)
116 1s24_A Rubredoxin 2; electron   63.4     3.7 0.00015   20.6   2.5   28    7-35     33-77  (87)
117 3fl2_A E3 ubiquitin-protein li  62.9     2.6 0.00011   21.5   1.6   28   11-43     54-81  (124)
118 1h7b_A Anaerobic ribonucleotid  62.6     1.3 5.7E-05   23.2   0.1   25   11-35    542-567 (605)
119 2csz_A Synaptotagmin-like prot  62.4     2.8 0.00012   21.3   1.7   28    9-36     25-52  (76)
120 2em2_A Zinc finger protein 28   62.3     3.3 0.00014   20.9   2.0   15   24-38     10-24  (46)
121 2ckl_A Polycomb group ring fin  62.3     2.5  0.0001   21.6   1.4   28    9-40     15-42  (108)
122 1p9r_A General secretion pathw  62.1       3 0.00012   21.1   1.8   23    8-34    303-345 (418)
123 2em8_A Zinc finger protein 224  61.9     3.3 0.00014   20.9   2.0   13   25-37     11-23  (46)
124 2zet_C Melanophilin; complex,   61.5     3.8 0.00016   20.5   2.3   27   10-36     69-95  (153)
125 2k5c_A Uncharacterized protein  61.4     2.4  0.0001   21.7   1.2   20   22-41     47-66  (95)
126 1ffk_W Ribosomal protein L37AE  61.3     2.4  0.0001   21.7   1.2   30    7-38     25-57  (73)
127 1yc5_A NAD-dependent deacetyla  60.9     3.5 0.00015   20.7   2.0   31    9-39    121-158 (246)
128 2ytq_A Zinc finger protein 268  60.4     3.4 0.00014   20.7   1.9   12   25-36     11-22  (46)
129 2xb4_A Adenylate kinase; ATP-b  59.8     3.4 0.00014   20.7   1.8   31    6-36    123-158 (223)
130 2jp9_A Wilms tumor 1; DNA bind  59.8       2 8.5E-05   22.2   0.6   13   25-37     65-77  (119)
131 3dpt_A ROCO, RAB family protei  59.6     2.1   9E-05   22.0   0.7   36    8-43    276-320 (332)
132 3mv2_A Coatomer subunit alpha;  59.6       6 0.00025   19.3   3.0   32    8-40    270-301 (325)
133 3ofq_0 50S ribosomal protein L  59.2     3.9 0.00016   20.4   2.0   19   11-34     29-47  (56)
134 2ee8_A Protein ODD-skipped-rel  59.1     4.4 0.00019   20.1   2.3   27   11-37     19-56  (106)
135 2emf_A Zinc finger protein 484  58.9     4.1 0.00017   20.2   2.1   13   25-37     11-23  (46)
136 2eov_A Zinc finger protein 484  58.7     3.8 0.00016   20.5   1.9   11   26-36     12-22  (46)
137 2eoq_A Zinc finger protein 224  58.5     3.5 0.00015   20.7   1.6   12   25-36     11-22  (46)
138 1rmd_A RAG1; V(D)J recombinati  58.4     3.7 0.00015   20.6   1.8   26    8-38     22-47  (116)
139 3gce_A Ferredoxin component of  58.2     5.4 0.00022   19.6   2.6   32    9-40     48-83  (121)
140 2f42_A STIP1 homology and U-bo  58.2     3.6 0.00015   20.6   1.7   30   10-44    107-136 (179)
141 1s1i_9 L37A, YL35, 60S ribosom  57.9     3.2 0.00014   20.9   1.4   30    7-38     33-65  (91)
142 2yur_A Retinoblastoma-binding   57.7     4.6 0.00019   20.0   2.2   30    9-42     15-44  (74)
143 2kre_A Ubiquitin conjugation f  57.5     2.9 0.00012   21.2   1.1   30   10-44     30-59  (100)
144 3hcs_A TNF receptor-associated  57.5     4.6 0.00019   20.0   2.1   26    6-36     15-40  (170)
145 2ckl_B Ubiquitin ligase protei  57.0     4.1 0.00017   20.3   1.8   27   11-41     56-82  (165)
146 2bx9_A Anti-trap, AT, tryptoph  56.5     2.8 0.00012   21.3   0.9   24    9-35      9-32  (53)
147 2ecw_A Tripartite motif-contai  56.4     4.2 0.00017   20.2   1.7   28    9-41     19-46  (85)
148 1yui_A GAGA-factor; complex (D  56.1     3.2 0.00013   21.0   1.1   18   21-38     19-36  (54)
149 1ubd_C Protein (YY1 zinc finge  55.9     2.8 0.00012   21.2   0.8   32   10-41      6-49  (124)
150 2dkt_A Ring finger and CHY zin  55.4     4.4 0.00019   20.1   1.8   25   10-34     72-106 (143)
151 2j9u_B VPS36, vacuolar protein  55.2     7.2  0.0003   18.8   2.8   46    1-46      9-60  (76)
152 2ctu_A Zinc finger protein 483  55.0     1.8 7.6E-05   22.4  -0.3   33    9-41     18-54  (73)
153 1jm7_B BARD1, BRCA1-associated  55.0     5.3 0.00022   19.6   2.1   28   11-42     24-51  (117)
154 2ghf_A ZHX1, zinc fingers and   54.9     3.9 0.00016   20.4   1.4   36    8-43     17-67  (102)
155 1wgm_A Ubiquitin conjugation f  54.7     4.6  0.0002   19.9   1.8   32    9-44     22-53  (98)
156 3lpe_B DNA-directed RNA polyme  54.5     4.5 0.00019   20.0   1.7   24   10-38      2-25  (59)
157 1gku_B Reverse gyrase, TOP-RG;  54.2     2.2 9.1E-05   22.0   0.0   24   10-36    582-605 (1054)
158 2con_A RUH-035 protein, NIN on  54.1     5.7 0.00024   19.4   2.1   22   11-34     17-38  (79)
159 2epq_A POZ-, at HOOK-, and zin  54.0     4.3 0.00018   20.1   1.5   13   25-37      9-21  (45)
160 2dmd_A Zinc finger protein 64,  53.7       8 0.00034   18.5   2.8   29   10-38     37-76  (96)
161 2ema_A Zinc finger protein 347  53.4     5.7 0.00024   19.4   2.0   17   24-40     10-26  (46)
162 2jr7_A DPH3 homolog; DESR1, CS  53.0     7.8 0.00033   18.6   2.7   32   10-42     24-65  (89)
163 2ct0_A Non-SMC element 1 homol  52.5     7.6 0.00032   18.6   2.6   28   10-37     29-63  (74)
164 2csh_A Zinc finger protein 297  52.4     4.8  0.0002   19.9   1.5   33   10-42     38-81  (110)
165 3lcz_A YCZA, inhibitor of trap  52.1     5.5 0.00023   19.5   1.8   24    9-35      9-32  (53)
166 2ep2_A Zinc finger protein 484  52.1     6.2 0.00026   19.2   2.1   16   24-39     10-25  (46)
167 2ecj_A Tripartite motif-contai  51.9     7.2  0.0003   18.8   2.4   35    4-43     10-44  (58)
168 2en1_A Zinc finger protein 224  51.4     4.7  0.0002   19.9   1.3   16   24-39     10-25  (46)
169 2epz_A Zinc finger protein 28   51.4     5.5 0.00023   19.5   1.7   16   24-39     10-25  (46)
170 1p91_A Ribosomal RNA large sub  51.3     5.4 0.00023   19.5   1.7   27   10-38      3-29  (269)
171 2ecv_A Tripartite motif-contai  51.2     6.1 0.00026   19.2   1.9   27    8-39     18-44  (85)
172 2vl6_A SSO MCM N-TER, minichro  50.7     8.7 0.00036   18.3   2.6   25   11-35    145-177 (268)
173 2ebt_A Krueppel-like factor 5;  50.6       8 0.00034   18.5   2.4   33    2-34      6-53  (100)
174 2elr_A Zinc finger protein 406  50.3     4.8  0.0002   19.9   1.2   15    6-20      6-20  (36)
175 3hct_A TNF receptor-associated  50.1     6.6 0.00028   19.0   1.9   27    8-39     17-43  (118)
176 1bor_A Transcription factor PM  49.9     5.6 0.00024   19.4   1.6   29    8-41      5-33  (56)
177 1weo_A Cellulose synthase, cat  49.9     8.8 0.00037   18.2   2.6   30   10-39     17-48  (93)
178 1z6u_A NP95-like ring finger p  49.1     7.2  0.0003   18.8   2.0   28    9-41     78-105 (150)
179 3knv_A TNF receptor-associated  49.1     7.2  0.0003   18.8   2.0   29    6-39     28-56  (141)
180 1wd2_A Ariadne-1 protein homol  48.6     5.5 0.00023   19.5   1.3   27   10-36      7-36  (60)
181 2ysj_A Tripartite motif-contai  48.4      10 0.00044   17.8   2.7   30    8-42     19-48  (63)
182 2k5r_A Uncharacterized protein  48.2     6.2 0.00026   19.2   1.6   18   21-38     48-65  (97)
183 2ppt_A Thioredoxin-2; thiredox  47.8     5.7 0.00024   19.4   1.3   11    8-18     13-23  (155)
184 1hqm_D DNA-directed RNA polyme  47.8     4.6 0.00019   20.0   0.8   23   11-36     57-80  (1265)
185 2ct2_A Tripartite motif protei  47.3     7.9 0.00033   18.5   2.0   28   11-39     17-44  (88)
186 2e72_A POGO transposable eleme  46.5     5.5 0.00023   19.5   1.1   17   26-42     12-28  (49)
187 2kn9_A Rubredoxin; metalloprot  45.5     7.6 0.00032   18.6   1.7   27    8-35     26-69  (81)
188 1ma3_A SIR2-AF2, transcription  45.1     8.1 0.00034   18.5   1.7   30    9-38    123-160 (253)
189 2v3b_B Rubredoxin 2, rubredoxi  44.9     8.8 0.00037   18.2   1.9   27    8-35      2-45  (55)
190 3k35_A Mono-ADP-ribosyltransfe  44.9       7 0.00029   18.9   1.4   30   10-39    139-184 (318)
191 3noy_A 4-hydroxy-3-methylbut-2  44.8     4.4 0.00019   20.1   0.4   18   25-42    270-288 (366)
192 2epa_A Krueppel-like factor 10  44.5      11 0.00047   17.6   2.4   34    9-42     17-65  (72)
193 1fv5_A First zinc finger of U-  44.4     4.4 0.00018   20.1   0.3   13   26-38      8-20  (36)
194 2egp_A Tripartite motif-contai  44.4     8.2 0.00035   18.4   1.7   32    5-41      8-39  (79)
195 1x3z_A Peptide:N-glycanase; pr  43.7     9.9 0.00041   17.9   2.0   46    5-50    115-185 (335)
196 3mkr_B Coatomer subunit alpha;  43.5      14 0.00057   17.1   2.7   31    9-40    262-292 (320)
197 1p7a_A BF3, BKLF, kruppel-like  43.3     7.6 0.00032   18.6   1.4   20   23-42      8-27  (37)
198 2yre_A F-box only protein 30;   43.1     8.8 0.00037   18.2   1.7   18   25-42     36-54  (100)
199 1ard_A Yeast transcription fac  42.0     7.2  0.0003   18.8   1.1   16   25-40      1-16  (29)
200 2jsp_A Transcriptional regulat  41.9     7.2  0.0003   18.8   1.1   16    7-22     19-34  (87)
201 2jo6_A Nitrite reductase [NAD(  41.8     9.9 0.00042   17.9   1.8   33    8-40     45-84  (113)
202 2odx_A Cytochrome C oxidase po  41.7      11 0.00045   17.7   2.0   28   14-41     43-71  (80)
203 3d89_A Rieske domain-containin  41.3     8.7 0.00036   18.3   1.4   30   10-39     55-90  (157)
204 2f4m_A Peptide N-glycanase; gl  40.5      14 0.00058   17.1   2.4   45    5-49     77-143 (295)
205 1wys_A Riken cDNA 2310008M20 p  40.2      15 0.00062   16.8   2.5   32    1-38      8-41  (75)
206 2e9h_A EIF-5, eukaryotic trans  40.2      15 0.00065   16.7   2.6   29   10-38    104-138 (157)
207 2kfq_A FP1; protein, de novo p  39.1     5.8 0.00024   19.4   0.2   10   28-37      4-13  (32)
208 1s1i_Y L35, YP55, 60S ribosoma  38.8      14 0.00059   17.0   2.2   23   10-34     16-38  (87)
209 2ctt_A DNAJ homolog subfamily   38.7      13 0.00054   17.2   2.0   29    6-34     25-53  (104)
210 2elu_A Zinc finger protein 406  38.7     6.8 0.00028   18.9   0.5   19    5-23      5-23  (37)
211 1wge_A Hypothetical protein 26  38.1     8.6 0.00036   18.3   1.0   26   10-36     31-62  (83)
212 2d9h_A Zinc finger protein 692  37.8     9.3 0.00039   18.1   1.1   34   11-44      9-56  (78)
213 2vrw_B P95VAV, VAV1, proto-onc  37.6      13 0.00056   17.1   1.9   29   10-38    358-386 (406)
214 2d9k_A FLN29 gene product; zin  37.3      12 0.00052   17.3   1.7   33    9-41     17-58  (75)
215 2a20_A Regulating synaptic mem  37.2      16 0.00066   16.7   2.2   32    4-36      4-35  (62)
216 1vq8_1 50S ribosomal protein L  37.1      15 0.00064   16.8   2.1   29    4-34      7-40  (57)
217 2eod_A TNF receptor-associated  36.6      11 0.00048   17.6   1.4   15   24-38      8-22  (66)
218 2yqq_A Zinc finger HIT domain-  36.5      10 0.00043   17.9   1.2   21   10-36     13-33  (56)
219 3dpu_A RAB family protein; roc  36.4     6.7 0.00028   19.0   0.2   35    8-42    479-522 (535)
220 2kr4_A Ubiquitin conjugation f  36.4      13 0.00054   17.2   1.7   30    9-43     14-43  (85)
221 3eh1_A Protein transport prote  36.2      14 0.00059   17.0   1.8   24   11-36     87-116 (751)
222 2kvf_A Zinc finger and BTB dom  36.1      10 0.00043   17.8   1.1   14   25-38      2-15  (28)
223 1yk4_A Rubredoxin, RD; electro  36.0      16 0.00068   16.6   2.1   19   16-35     26-44  (52)
224 1mzb_A Ferric uptake regulatio  35.7      17 0.00072   16.5   2.2   30    9-38     70-103 (136)
225 2pw4_A Uncharacterized protein  35.7      14  0.0006   17.0   1.8   33    3-35    139-176 (188)
226 2poi_A Baculoviral IAP repeat-  35.4      14 0.00057   17.1   1.7   19   19-37     47-66  (94)
227 2qgp_A HNH endonuclease; Q39X4  35.3      11 0.00047   17.6   1.2   12   28-39     37-48  (112)
228 1nui_A DNA primase/helicase; z  35.2      21  0.0009   15.9   2.7   27   10-38     15-45  (255)
229 2j7j_A Transcription factor II  35.2      11 0.00046   17.7   1.1   31   12-42      6-49  (85)
230 2b4y_A NAD-dependent deacetyla  35.1      15 0.00061   16.9   1.8   15    9-23    132-146 (271)
231 1wfl_A Zinc finger protein 216  35.1      17 0.00072   16.5   2.1   27    7-37     23-49  (74)
232 1fqt_A Rieske-type ferredoxin   35.1      14  0.0006   16.9   1.7   30   11-40     45-77  (112)
233 1vzi_A Desulfoferrodoxin; ferr  34.8      14  0.0006   17.0   1.7   25   11-37      9-35  (126)
234 1wfe_A Riken cDNA 2310008M20 p  34.5      23 0.00096   15.7   2.7   30    6-39     22-53  (86)
235 3bbo_W Ribosomal protein L24;   34.0      15 0.00064   16.8   1.7   30    9-38    135-170 (191)
236 2w57_A Ferric uptake regulatio  33.9      13 0.00054   17.3   1.3   29   10-38     70-102 (150)
237 2elp_A Zinc finger protein 406  33.7      15 0.00062   16.9   1.6   15   23-37      6-20  (37)
238 3k30_A Histamine dehydrogenase  33.1     8.6 0.00036   18.3   0.4   30    9-38    345-378 (690)
239 1u5k_A Hypothetical protein; O  33.0      22 0.00093   15.8   2.4   28   10-37    151-181 (244)
240 2d8t_A Dactylidin, ring finger  33.0      14 0.00057   17.1   1.3   26   11-41     17-42  (71)
241 1yop_A KTI11P; zinc finger, me  32.6     8.5 0.00036   18.3   0.3   26   10-36     24-55  (83)
242 1ejp_A Syndecan-4; symmetric-p  32.2      14 0.00058   17.0   1.3   17   19-35      9-25  (28)
243 1v54_F VI, cytochrome C oxidas  32.0      22 0.00093   15.8   2.3   23   16-38     68-91  (98)
244 1exk_A DNAJ protein; extended   32.0      13 0.00056   17.1   1.2   31    5-35      7-37  (79)
245 2yte_A Zinc finger protein 473  31.8      15 0.00063   16.8   1.4   19   23-41      7-25  (42)
246 1nnq_A Rubrerythrin; structura  31.6      15 0.00062   16.9   1.3   10   27-36    140-149 (171)
247 1t1h_A Gspef-atpub14, armadill  31.4      15 0.00064   16.8   1.4   32    8-44      7-38  (78)
248 2g2k_A EIF-5, eukaryotic trans  31.4      23 0.00095   15.7   2.3   29   10-38     97-131 (170)
249 1dx8_A Rubredoxin; electron tr  31.3      22 0.00092   15.8   2.2   27    8-35      6-49  (70)
250 2yt5_A Metal-response element-  31.3      24   0.001   15.6   2.4   35    7-41      4-38  (66)
251 2i7f_A Ferredoxin component of  31.0      18 0.00074   16.4   1.7   31    9-39     42-74  (108)
252 3jyw_Y 60S ribosomal protein L  30.9      22 0.00093   15.8   2.1   22   11-34     17-38  (52)
253 2csy_A Zinc finger protein 183  30.3      21  0.0009   15.9   2.0   27   10-41     16-42  (81)
254 2jne_A Hypothetical protein YF  30.1      12 0.00052   17.3   0.8   29    5-37     43-72  (101)
255 1rim_A E6APC2 peptide; E6-bind  29.9      13 0.00056   17.2   0.9   11   28-38      4-14  (33)
256 1wfh_A Zinc finger (AN1-like)   29.7      27  0.0012   15.2   2.5   27    7-37     13-39  (64)
257 1hxr_A Guanine nucleotide exch  29.7      15 0.00065   16.7   1.2   14   23-36      9-22  (115)
258 3iuf_A Zinc finger protein UBI  29.5      15 0.00063   16.8   1.1   20   24-43      5-24  (48)
259 2yuc_A TNF receptor-associated  29.4      18 0.00075   16.4   1.4   33   10-42     17-60  (76)
260 1dt9_A ERF1, protein (eukaryot  29.4      14  0.0006   17.0   1.0   29    9-37    332-367 (437)
261 1l8d_A DNA double-strand break  28.9      18 0.00075   16.4   1.4   19   21-39     42-60  (112)
262 3c0d_A Putative nitrite reduct  28.8      30  0.0012   15.0   3.3   32    9-40     44-82  (119)
263 1wev_A Riken cDNA 1110020M19;   28.8      24   0.001   15.5   2.1   31   10-40     17-47  (88)
264 2eos_A B-cell lymphoma 6 prote  28.8      18 0.00076   16.3   1.4   20   23-42      8-27  (42)
265 3dqy_A Toluene 1,2-dioxygenase  28.5      22 0.00093   15.8   1.8   31    9-39     39-71  (106)
266 2jrp_A Putative cytoplasmic pr  27.9      21 0.00086   16.0   1.6   24   10-37     19-42  (81)
267 2d8s_A Cellular modulator of i  27.7      28  0.0012   15.1   2.2   13   26-38     58-70  (80)
268 2vf7_A UVRA2, excinuclease ABC  27.6      24   0.001   15.6   1.9   24   11-34    130-156 (842)
269 3n71_A Histone lysine methyltr  27.6      31  0.0013   14.9   2.5   24    9-36     49-72  (490)
270 1zu1_A DSRBP-ZFA, RNA binding   27.5      12  0.0005   17.4   0.3   11   26-36     93-103 (127)
271 1x4v_A Hypothetical protein LO  27.3      17 0.00071   16.5   1.0   27   11-39     14-40  (63)
272 1vm9_A Toluene-4-monooxygenase  27.0      24   0.001   15.5   1.8   31   10-40     42-74  (111)
273 3m1d_A Baculoviral IAP repeat-  27.0      23 0.00096   15.7   1.7   19   19-37     38-57  (85)
274 2de6_D Ferredoxin component of  27.0      24   0.001   15.6   1.8   31    9-39     43-75  (115)
275 2eoh_A Zinc finger protein 28   26.9      19  0.0008   16.2   1.2   20   23-42      9-28  (46)
276 2zkr_2 60S ribosomal protein L  26.9      27  0.0011   15.3   2.0   29    4-34      6-39  (97)
277 2d74_B Translation initiation   26.7      21 0.00087   16.0   1.4   32   11-42    106-141 (148)
278 2emb_A Zinc finger protein 473  26.7      21  0.0009   15.9   1.5   20   23-42      9-28  (44)
279 1qyp_A RNA polymerase II; tran  26.2      13 0.00055   17.2   0.3   10   25-34     14-23  (57)
280 1x4w_A Hypothetical protein FL  26.1     9.5  0.0004   18.0  -0.4   33    3-36      9-41  (67)
281 2emz_A ZFP-95, zinc finger pro  25.8      21 0.00087   16.0   1.3   18   23-40      9-26  (46)
282 1sp2_A SP1F2; zinc finger, tra  25.6      19 0.00082   16.1   1.1   18   25-42      1-20  (31)
283 2jmo_A Parkin; IBR, E3 ligase,  25.5      34  0.0014   14.6   2.4   28   10-37     26-61  (80)
284 2eof_A Zinc finger protein 268  25.4      23 0.00097   15.7   1.4   20   23-42      9-28  (44)
285 3ofq_1 50S ribosomal protein L  25.4      22  0.0009   15.9   1.3   28    8-35      6-43  (50)
286 2ept_A Zinc finger protein 32;  25.3      25  0.0011   15.4   1.6   20   23-42      7-26  (41)
287 2epc_A Zinc finger protein 32;  25.1      25  0.0011   15.5   1.6   18   23-40      8-25  (42)
288 2vm5_A Baculoviral IAP repeat-  25.1      26  0.0011   15.3   1.7   19   19-37     48-67  (106)
289 2djb_A Polycomb group ring fin  25.1      34  0.0014   14.6   2.3   32    6-41     12-43  (72)
290 1jm7_A BRCA1, breast cancer ty  25.0     8.8 0.00037   18.2  -0.8   23   10-37     22-44  (112)
291 2jw6_A Deformed epidermal auto  24.9      32  0.0014   14.8   2.1   24    7-36      7-30  (52)
292 1vyx_A ORF K3, K3RING; zinc-bi  24.8      20 0.00082   16.1   1.0   28   11-38      8-35  (60)
293 2yso_A ZFP-95, zinc finger pro  24.7      25   0.001   15.5   1.5   19   23-41      9-27  (46)
294 1va1_A Transcription factor SP  24.6      25  0.0011   15.5   1.5   17   24-40      6-24  (37)
295 1wff_A Riken cDNA 2810002D23 p  24.3      36  0.0015   14.5   2.8   26    9-37     25-50  (85)
296 1d4u_A Nucleotide excision rep  24.3      35  0.0015   14.6   2.2   25   10-34      6-34  (111)
297 3f2b_A DNA-directed DNA polyme  24.2      21 0.00087   16.0   1.0   12   25-36    526-537 (1041)
298 2yu5_A Zinc finger protein 473  24.1      27  0.0011   15.3   1.6   20   23-42      9-28  (44)
299 2emx_A Zinc finger protein 268  23.9      27  0.0011   15.3   1.5   20   23-42      7-26  (44)
300 3h2y_A GTPase family protein;   23.8      13 0.00057   17.1   0.0   25    9-33      4-41  (368)
301 2fe3_A Peroxide operon regulat  23.6      34  0.0014   14.7   2.0   29   10-38     74-105 (145)
302 1nlt_A Protein YDJ1, mitochond  23.4      30  0.0013   14.9   1.8   10    6-15     51-60  (248)
303 2c2l_A CHIP, carboxy terminus   23.1      35  0.0015   14.6   2.0   29   11-44    210-238 (281)
304 2en2_A B-cell lymphoma 6 prote  23.1      28  0.0012   15.1   1.5   20   23-42      8-27  (42)
305 2elq_A Zinc finger protein 406  22.9      28  0.0012   15.2   1.5   20   23-42      6-25  (36)
306 2ep4_A Ring finger protein 24;  22.8      35  0.0015   14.5   2.0   32    6-39     12-43  (74)
307 1iym_A EL5; ring-H2 finger, ub  22.7      38  0.0016   14.4   2.1   31   11-42      7-37  (55)
308 1v98_A Thioredoxin; oxidoreduc  22.7      15 0.00062   16.9   0.0   13   11-27      4-16  (140)
309 1yuz_A Nigerythrin; rubrythrin  22.6      24 0.00099   15.6   1.1   10   28-37    173-182 (202)
310 2epv_A Zinc finger protein 268  22.1      30  0.0013   15.0   1.5   20   23-42      9-28  (44)
311 3e20_C Eukaryotic peptide chai  22.0      17 0.00073   16.4   0.3   29    9-37    337-374 (441)
312 2epr_A POZ-, at HOOK-, and zin  22.0      23 0.00097   15.7   0.9   21   23-43      9-29  (48)
313 2el6_A Zinc finger protein 268  21.9      31  0.0013   14.9   1.6   19   23-41      9-27  (46)
314 2el5_A Zinc finger protein 268  21.7      31  0.0013   14.9   1.5   20   23-42      7-26  (42)
315 2eou_A Zinc finger protein 473  21.5      28  0.0012   15.2   1.2   20   23-42      9-28  (44)
316 2yrk_A Zinc finger homeobox pr  21.5      25  0.0011   15.4   1.0   16   24-39     11-26  (55)
317 1dj7_A Ferredoxin thioredoxin   21.5      11 0.00047   17.6  -0.8   35    4-42     48-97  (117)
318 2en7_A Zinc finger protein 268  21.3      29  0.0012   15.1   1.3   20   23-42      9-28  (44)
319 2gbw_A Biphenyl 2,3-dioxygenas  21.2      34  0.0014   14.7   1.6   31   10-40     78-111 (454)
320 2em4_A Zinc finger protein 28   21.1      33  0.0014   14.7   1.5   20   23-42      9-28  (46)
321 2elt_A Zinc finger protein 406  21.1      33  0.0014   14.7   1.5   20   23-42      6-25  (36)
322 2xeu_A Ring finger protein 4;   21.0      13 0.00055   17.2  -0.5   32    7-38      1-34  (64)
323 2el4_A Zinc finger protein 268  20.6      35  0.0015   14.6   1.6   20   23-42      9-28  (46)
324 2qra_D XIAP, baculoviral IAP r  20.6      36  0.0015   14.5   1.7   20   18-37     63-83  (111)
325 3ky9_A Proto-oncogene VAV; cal  20.5      35  0.0015   14.6   1.5   12   10-21    530-541 (587)
326 2em0_A Zinc finger protein 224  20.5      30  0.0013   15.0   1.2   20   23-42      9-28  (46)
327 3hl5_A Baculoviral IAP repeat-  20.4      37  0.0016   14.4   1.7   20   18-37     37-57  (95)
328 1a7i_A QCRP2 (LIM1); LIM domai  20.4      27  0.0011   15.3   1.0   36    4-39      2-47  (81)
329 2emm_A ZFP-95, zinc finger pro  20.3      34  0.0014   14.6   1.5   20   23-42      9-28  (46)
330 2eoo_A ZFP-95, zinc finger pro  20.3      36  0.0015   14.5   1.6   20   23-42      9-28  (46)
331 2jza_A Nitrite reductase [NAD(  20.3      43  0.0018   14.0   3.1   32    9-40     43-81  (130)
332 2ytm_A Zinc finger protein 28   20.1      30  0.0013   15.0   1.2   18   24-41     10-27  (46)
333 1g73_C Inhibitors of apoptosis  20.1      38  0.0016   14.4   1.7   18   19-36     52-70  (121)
334 1ncs_A Peptide M30F, transcrip  20.0      31  0.0013   14.9   1.2   19   21-39     13-33  (47)

No 1  
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=95.46  E-value=0.0074  Score=37.08  Aligned_cols=32  Identities=16%  Similarity=0.407  Sum_probs=26.3

Q ss_pred             CCCCCCCCCEEEECCCCCCCCCCCCCEECHHH
Q ss_conf             31178888744214888722778987153233
Q gi|254780459|r    9 KRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus         9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~   40 (129)
                      =--||.|+.-|-=-...-.+||.||.||.+..
T Consensus        27 lP~CP~C~seytY~dg~~~vCPeC~hEW~~~~   58 (138)
T 2akl_A           27 LPPCPQCNSEYTYEDGALLVCPECAHEWSPNE   58 (138)
T ss_dssp             SCCCTTTCCCCCEECSSSEEETTTTEEECTTT
T ss_pred             CCCCCCCCCCCEECCCCEEECCCCCCCCCCCC
T ss_conf             98898889902373799888987637378453


No 2  
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=95.40  E-value=0.0077  Score=36.95  Aligned_cols=28  Identities=14%  Similarity=0.209  Sum_probs=21.4

Q ss_pred             CEEEECCCC-CCCCCCCCCEECHHHHHCC
Q ss_conf             744214888-7227789871532331012
Q gi|254780459|r   17 KRFYDLNKQ-VIVSPYTQNSWPLAYFEAP   44 (129)
Q Consensus        17 ~KFYDlnk~-PiiCP~CG~e~~~~~~~~~   44 (129)
                      .-|++|.+. +++|||||+.|.....++.
T Consensus        38 ~Vyl~~~~~~~v~CpYC~~~fv~~~~l~~   66 (87)
T 2jz8_A           38 HIFIDMGSTDEKICPYCSTLYRYDPSLSY   66 (87)
T ss_dssp             SCEEECTTCCEECCTTTCCEEECCTTSCT
T ss_pred             EEEEECCCCCEEECCCCCCEEEECCCCCC
T ss_conf             89788699997988899988883777776


No 3  
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=95.00  E-value=0.0082  Score=36.78  Aligned_cols=33  Identities=18%  Similarity=0.305  Sum_probs=27.1

Q ss_pred             CCCCCCCCCCCE--EEECCCCCCCCCCCCCEECHH
Q ss_conf             783117888874--421488872277898715323
Q gi|254780459|r    7 GTKRTCPDTGKR--FYDLNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus         7 G~KR~C~~Cg~K--FYDlnk~PiiCP~CG~e~~~~   39 (129)
                      ..+|+||.||.+  .||-.+--++|..||..+.-.
T Consensus         3 ~~~~~Cp~Cgs~~iv~D~~~Ge~vC~~CG~V~~e~   37 (50)
T 1pft_A            3 NKQKVCPACESAELIYDPERGEIVCAKCGYVIEEN   37 (50)
T ss_dssp             SSCCSCTTTSCCCEEEETTTTEEEESSSCCBCCCC
T ss_pred             CCCCCCCCCCCCCEEEECCCCEEECCCCCCEECCC
T ss_conf             65553859889837886888928627898593324


No 4  
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=94.06  E-value=0.011  Score=36.08  Aligned_cols=32  Identities=22%  Similarity=0.533  Sum_probs=27.7

Q ss_pred             CCCCCCCCCCCEEE--ECCCCCCCCCCCCCEECH
Q ss_conf             78311788887442--148887227789871532
Q gi|254780459|r    7 GTKRTCPDTGKRFY--DLNKQVIVSPYTQNSWPL   38 (129)
Q Consensus         7 G~KR~C~~Cg~KFY--Dlnk~PiiCP~CG~e~~~   38 (129)
                      |.=..||+||.-.|  +|.+.==+||+||.-|..
T Consensus        22 ~lW~kC~~C~~~~~~~~l~~n~~vCp~C~~H~ri   55 (304)
T 2f9y_B           22 GVWTKCDSCGQVLYRAELERNLEVCPKCDHHMRM   55 (304)
T ss_dssp             -CEECCTTTCCCEETTHHHHTTTBCTTTCCBCCC
T ss_pred             CCCCCCCCCCCEEEHHHHHHHCCCCCCCCCCCCC
T ss_conf             7621387877631599999848899499898754


No 5  
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2 PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D* 2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Probab=93.92  E-value=0.017  Score=34.89  Aligned_cols=31  Identities=10%  Similarity=0.085  Sum_probs=21.7

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCEECHHHHHC
Q ss_conf             178888744214888722778987153233101
Q gi|254780459|r   11 TCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEA   43 (129)
Q Consensus        11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~   43 (129)
                      -| .|| ||.-....-++|+.||.|+......+
T Consensus        57 eC-~CG-kyk~~~~~g~~C~~CgVEvt~s~vRR   87 (1524)
T 2a6h_D           57 EC-ACG-KYKRQRFEGKVCERCGVEVTKSIVRR   87 (1524)
T ss_dssp             CC-SSC-SSCSSTTTTCCCSSSCCCCSSTHHHH
T ss_pred             EE-ECC-CCCCCCCCCEECCCCCCEECCCCHHH
T ss_conf             67-387-76552649827799987878432576


No 6  
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=93.76  E-value=0.033  Score=33.10  Aligned_cols=35  Identities=11%  Similarity=0.191  Sum_probs=30.4

Q ss_pred             CCHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEEC
Q ss_conf             752227831178888744214888722778987153
Q gi|254780459|r    2 AKPELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus         2 aK~elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~   37 (129)
                      ..|.|=.-+.|..|+++|= |-+..-.|..||..|=
T Consensus       154 ~~p~w~~~~~C~~C~~~F~-~~~r~~~Cr~CG~~~C  188 (220)
T 1dvp_A          154 TAPNWADGRVCHRCRVEFT-FTNRKHHCRNCGQVFC  188 (220)
T ss_dssp             CCCCCCCCSBCTTTCCBCC-SSSCCEECTTTCCEEC
T ss_pred             CCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCHHHH
T ss_conf             4222567885767898111-7653716440278862


No 7  
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubredoxin-like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=93.74  E-value=0.013  Score=35.58  Aligned_cols=31  Identities=19%  Similarity=0.222  Sum_probs=25.0

Q ss_pred             HHHCCCCCCCCCCCEEEECCCCCCCCCCCCCE
Q ss_conf             22278311788887442148887227789871
Q gi|254780459|r    4 PELGTKRTCPDTGKRFYDLNKQVIVSPYTQNS   35 (129)
Q Consensus         4 ~elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e   35 (129)
                      ++-+++-+|+.||--++. ..-|-+||-||+.
T Consensus       150 ~~~~~~~~C~~CG~i~~g-~~~p~~CP~C~~~  180 (191)
T 1lko_A          150 REQATKWRCRNCGYVHEG-TGAPELCPACAHP  180 (191)
T ss_dssp             EEEEEEEEETTTCCEEEE-EECCSBCTTTCCB
T ss_pred             CCCCCEEECCCCCCCCCC-CCCCCCCCCCCCC
T ss_conf             578845789999860128-9998859799996


No 8  
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}
Probab=93.47  E-value=0.027  Score=33.67  Aligned_cols=25  Identities=8%  Similarity=0.292  Sum_probs=19.7

Q ss_pred             CEEEECCCC--CCCCCCCCCEECHHHH
Q ss_conf             744214888--7227789871532331
Q gi|254780459|r   17 KRFYDLNKQ--VIVSPYTQNSWPLAYF   41 (129)
Q Consensus        17 ~KFYDlnk~--PiiCP~CG~e~~~~~~   41 (129)
                      .-||.|++.  +++|||||.-|.....
T Consensus        42 ~Vyl~l~~~~~~v~C~YC~~~fv~k~~   68 (80)
T 2jvm_A           42 RVWLSIPHETGFVECGYCDRRYIHESF   68 (80)
T ss_dssp             CEEEECCTTTCEEECSSSSCEEEEHHH
T ss_pred             EEEEECCCCCCEEECCCCCCEEECHHH
T ss_conf             893875799986988899886670445


No 9  
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=93.31  E-value=0.034  Score=33.00  Aligned_cols=34  Identities=18%  Similarity=0.251  Sum_probs=28.2

Q ss_pred             HHHCCCCCCCCCCC----EEEECCCCCCCCCCCCCEEC
Q ss_conf             22278311788887----44214888722778987153
Q gi|254780459|r    4 PELGTKRTCPDTGK----RFYDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus         4 ~elG~KR~C~~Cg~----KFYDlnk~PiiCP~CG~e~~   37 (129)
                      +.+-++++||.||.    -.+|...--++|-.||..+.
T Consensus        16 ~~~~~~~~C~~C~~~~~~iv~D~~~G~~vC~~CG~Vl~   53 (345)
T 3k7a_M           16 PNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLS   53 (345)
T ss_dssp             -CCCCCCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCC
T ss_pred             CCCCCCEECCCCCCCCCCEEEECCCCCEECCCCCCCCC
T ss_conf             99860318959999998646787889883146887804


No 10 
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=93.25  E-value=0.043  Score=32.36  Aligned_cols=39  Identities=13%  Similarity=0.126  Sum_probs=30.3

Q ss_pred             CCHHHCCCCCCCCCCCE--EEECCCCCCCCCCCCCEECHHH
Q ss_conf             75222783117888874--4214888722778987153233
Q gi|254780459|r    2 AKPELGTKRTCPDTGKR--FYDLNKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus         2 aK~elG~KR~C~~Cg~K--FYDlnk~PiiCP~CG~e~~~~~   40 (129)
                      ++...-.|..||+||.+  .||-.+--+||..||..+.-..
T Consensus         4 ~~~~~~~~~~Cp~Cgs~~iv~D~~~Ge~vC~~CG~Vlee~~   44 (58)
T 1dl6_A            4 SRLDALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRV   44 (58)
T ss_dssp             CSCCCCSCCSBTTBSSSCCEECSSSCCEECTTTCCEECCSC
T ss_pred             CCCCCCCCCCCCCCCCCCEEEECCCCEEECCCCCCEECCCC
T ss_conf             42325675589698798777888899187278998924331


No 11 
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=93.18  E-value=0.036  Score=32.86  Aligned_cols=22  Identities=27%  Similarity=0.712  Sum_probs=18.7

Q ss_pred             CCCCCCCCCEEEECCCCCCCCCCCCCE
Q ss_conf             311788887442148887227789871
Q gi|254780459|r    9 KRTCPDTGKRFYDLNKQVIVSPYTQNS   35 (129)
Q Consensus         9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e   35 (129)
                      =|.|++||.  |=|..   +||.||..
T Consensus         6 irkC~~C~~--YTL~~---~Cp~CG~~   27 (60)
T 2apo_B            6 MKKCPKCGL--YTLKE---ICPKCGEK   27 (60)
T ss_dssp             CEECTTTCC--EESSS---BCSSSCSB
T ss_pred             HHHCCCCCC--EECCC---CCCCCCCC
T ss_conf             651874666--53545---37678784


No 12 
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=93.14  E-value=0.042  Score=32.44  Aligned_cols=27  Identities=15%  Similarity=0.122  Sum_probs=19.0

Q ss_pred             CCCCCCCCCEEEECCCCCCCCCCCCCE
Q ss_conf             311788887442148887227789871
Q gi|254780459|r    9 KRTCPDTGKRFYDLNKQVIVSPYTQNS   35 (129)
Q Consensus         9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e   35 (129)
                      .-.|++||..|.--...-..||.||..
T Consensus        73 ~~~C~~Cg~~~~~~~~~~~~CP~Cgs~   99 (119)
T 2kdx_A           73 ELECKDCSHVFKPNALDYGVCEKCHSK   99 (119)
T ss_dssp             EEECSSSSCEECSCCSTTCCCSSSSSC
T ss_pred             EEECCCCCCEECCCCCCCCCCCCCCCC
T ss_conf             789878998833477547729097899


No 13 
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=92.87  E-value=0.032  Score=33.17  Aligned_cols=32  Identities=16%  Similarity=0.194  Sum_probs=26.2

Q ss_pred             HCCCCCCCCCCCE---E-EECCCCCCCCCCCCCEEC
Q ss_conf             2783117888874---4-214888722778987153
Q gi|254780459|r    6 LGTKRTCPDTGKR---F-YDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus         6 lG~KR~C~~Cg~K---F-YDlnk~PiiCP~CG~e~~   37 (129)
                      +-++.+||.||.+   + ||-.+--+||-.||..+.
T Consensus        18 lNitl~CPeCGS~~t~IVeD~s~GEiVCsdCGLVIE   53 (197)
T 3k1f_M           18 LNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLS   53 (197)
T ss_dssp             CCCCCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCC
T ss_pred             CEEEEECCCCCCCCCEEEEECCCCCEECCCCCEEEC
T ss_conf             865468999999899898979989689714892924


No 14 
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=92.58  E-value=0.03  Score=33.37  Aligned_cols=29  Identities=24%  Similarity=0.433  Sum_probs=25.3

Q ss_pred             CCCCCCCCEEE--ECCCCCCCCCCCCCEECH
Q ss_conf             11788887442--148887227789871532
Q gi|254780459|r   10 RTCPDTGKRFY--DLNKQVIVSPYTQNSWPL   38 (129)
Q Consensus        10 R~C~~Cg~KFY--Dlnk~PiiCP~CG~e~~~   38 (129)
                      ..||+||.-.|  ||-+.==|||+||.-|..
T Consensus        31 ~kCp~C~~~i~~~dl~~n~~VCp~C~~H~rl   61 (285)
T 2f9i_B           31 TKCPKCKKIMYTKELAENLNVCFNCDHHIAL   61 (285)
T ss_dssp             EECTTTCCEEEHHHHHHTTTBCTTTCCBCCC
T ss_pred             ECCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             0288887313299999848889099799865


No 15 
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}
Probab=92.37  E-value=0.034  Score=33.02  Aligned_cols=22  Identities=14%  Similarity=0.430  Sum_probs=17.7

Q ss_pred             CEEEECCCC--CCCCCCCCCEECH
Q ss_conf             744214888--7227789871532
Q gi|254780459|r   17 KRFYDLNKQ--VIVSPYTQNSWPL   38 (129)
Q Consensus        17 ~KFYDlnk~--PiiCP~CG~e~~~   38 (129)
                      .-||.|++.  .++|||||.-|..
T Consensus        29 ~Vyl~l~~~~~~v~CpYC~~~fv~   52 (67)
T 2jrr_A           29 RVWLQIPEDTGWVECPYCDCKYVL   52 (67)
T ss_dssp             EEEEECCTTTSEEEETTTTEEEEE
T ss_pred             EEEEECCCCCCEEECCCCCCEEEE
T ss_conf             898985699986989889879898


No 16 
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structural genomics, PSI; NMR {Pyrococcus furiosus dsm 3638} SCOP: a.4.5.82
Probab=91.97  E-value=0.053  Score=31.83  Aligned_cols=27  Identities=19%  Similarity=0.292  Sum_probs=23.8

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCEEC
Q ss_conf             178888744214888722778987153
Q gi|254780459|r   11 TCPDTGKRFYDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus        11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~   37 (129)
                      .|-+||--|=|.-|.|=-||.|..+|.
T Consensus        69 ~CrkCGfvF~d~~kkPSRCP~CKSE~I   95 (105)
T 2gmg_A           69 QCRKCGFVFKAEINIPSRCPKCKSEWI   95 (105)
T ss_dssp             BBTTTCCBCCCCSSCCSSCSSSCCCCB
T ss_pred             HHCCCCCEECCCCCCCCCCCCCCCCCC
T ss_conf             023085774788999998999887462


No 17 
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=91.44  E-value=0.1  Score=30.04  Aligned_cols=28  Identities=14%  Similarity=0.326  Sum_probs=23.0

Q ss_pred             CCCCCCCEE--------EECCCCCCCCCCCCCEECH
Q ss_conf             178888744--------2148887227789871532
Q gi|254780459|r   11 TCPDTGKRF--------YDLNKQVIVSPYTQNSWPL   38 (129)
Q Consensus        11 ~C~~Cg~KF--------YDlnk~PiiCP~CG~e~~~   38 (129)
                      +||.|+++|        +|+...-.+|-.||+++..
T Consensus        16 ~Cp~C~k~ys~Lda~~Lld~~~~~F~C~~C~~el~e   51 (62)
T 1vd4_A           16 KCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEE   51 (62)
T ss_dssp             ECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEE
T ss_pred             ECCCCCCEECHHHHHHHCCCCCCEEEECCCCCEEEC
T ss_conf             888988882375598835967891973688999655


No 18 
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase- inhibitor complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=91.38  E-value=0.077  Score=30.84  Aligned_cols=32  Identities=19%  Similarity=0.319  Sum_probs=21.8

Q ss_pred             CCCCCCCCCCCEEE---E--CCCCCCCCCCCCCEECH
Q ss_conf             78311788887442---1--48887227789871532
Q gi|254780459|r    7 GTKRTCPDTGKRFY---D--LNKQVIVSPYTQNSWPL   38 (129)
Q Consensus         7 G~KR~C~~Cg~KFY---D--lnk~PiiCP~CG~e~~~   38 (129)
                      -.||.|++||.+.-   .  .+.....||+||+.|..
T Consensus        32 ~~~r~c~~Cg~~~~~~~~~~~~~~~~~c~~cg~~~~~   68 (681)
T 2pzi_A           32 ESKRFCWNCGRPVGRSDSETKGASEGWCPYCGSPYSF   68 (681)
T ss_dssp             GGGCBCTTTCCBCSCC-----CCSEEECTTTCCEEEC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             7676652248957777788887667768889996778


No 19 
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=91.35  E-value=0.1  Score=30.02  Aligned_cols=30  Identities=10%  Similarity=0.154  Sum_probs=22.5

Q ss_pred             CCCCCCCCCCEEE-ECCCCCCCCCCCCCEEC
Q ss_conf             8311788887442-14888722778987153
Q gi|254780459|r    8 TKRTCPDTGKRFY-DLNKQVIVSPYTQNSWP   37 (129)
Q Consensus         8 ~KR~C~~Cg~KFY-Dlnk~PiiCP~CG~e~~   37 (129)
                      .-|-||.|+.-|. +-+-.-++||.||+.|=
T Consensus        24 ~~~~CP~C~~~~~~~~~~~~~~C~~C~~~fC   54 (86)
T 2ct7_A           24 KFLWCAQCSFGFIYEREQLEATCPQCHQTFC   54 (86)
T ss_dssp             CEECCSSSCCCEECCCSCSCEECTTTCCEEC
T ss_pred             CCCCCCCCCCEEEECCCCCEEEECCCCCEEC
T ss_conf             9749989994488679999888499999456


No 20 
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=91.22  E-value=0.08  Score=30.75  Aligned_cols=27  Identities=7%  Similarity=0.134  Sum_probs=18.9

Q ss_pred             CCCCCCCCCEEEECC--------------------CCCCCCCCCCCE
Q ss_conf             311788887442148--------------------887227789871
Q gi|254780459|r    9 KRTCPDTGKRFYDLN--------------------KQVIVSPYTQNS   35 (129)
Q Consensus         9 KR~C~~Cg~KFYDln--------------------k~PiiCP~CG~e   35 (129)
                      +-.|.+||..|.=-.                    ..-+.||.||..
T Consensus        70 ~~~C~~Cg~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~CP~Cgs~  116 (139)
T 3a43_A           70 VFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSH  116 (139)
T ss_dssp             EEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCC
T ss_pred             EEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             38986789841114200011211122223343234655479197698


No 21 
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protein structure initiative, midwest center for structural genomics; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=91.07  E-value=0.074  Score=30.94  Aligned_cols=30  Identities=13%  Similarity=0.277  Sum_probs=21.0

Q ss_pred             CCCCCCCCCCCEE-E---EC-CCCCCCCCCCCCEE
Q ss_conf             7831178888744-2---14-88872277898715
Q gi|254780459|r    7 GTKRTCPDTGKRF-Y---DL-NKQVIVSPYTQNSW   36 (129)
Q Consensus         7 G~KR~C~~Cg~KF-Y---Dl-nk~PiiCP~CG~e~   36 (129)
                      |.=|-||+||.+. +   .- .+.+..||+||..+
T Consensus         1 ~~~~yCp~CG~~~~~~~~~g~~~~~~~C~~C~~~~   35 (189)
T 3cng_A            1 GHMKFCSQCGGEVILRIPEGDTLPRYICPKCHTIH   35 (189)
T ss_dssp             --CCBCTTTCCBCEEECCTTCSSCEEEETTTTEEE
T ss_pred             CCCEECCCCCCCCEECCCCCCCCEEEECCCCCCCC
T ss_conf             97605846787564034688972475379999760


No 22 
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; HET: MSE; 2.20A {Escherichia coli K12} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=90.98  E-value=0.13  Score=29.37  Aligned_cols=31  Identities=10%  Similarity=0.279  Sum_probs=19.8

Q ss_pred             CCCCCCCCCCEEEEC-CCCCCCCCCCCCEECH
Q ss_conf             831178888744214-8887227789871532
Q gi|254780459|r    8 TKRTCPDTGKRFYDL-NKQVIVSPYTQNSWPL   38 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDl-nk~PiiCP~CG~e~~~   38 (129)
                      +.|-|+.||++-.-. +..-..||.||..+=|
T Consensus       106 ~~rfC~~CG~~~~~~~~~~~~~C~~C~~~~yP  137 (269)
T 1vk6_A          106 SHKYCGYCGHEMYPSKTEWAMLCSHCRERYYP  137 (269)
T ss_dssp             TTSBCTTTCCBEEECSSSSCEEESSSSCEECC
T ss_pred             CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
T ss_conf             29868667987743679804889899885688


No 23 
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc-binding motif, DNA replication; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=90.92  E-value=0.08  Score=30.72  Aligned_cols=34  Identities=15%  Similarity=0.264  Sum_probs=24.5

Q ss_pred             CCCCCCCCCCEEE----------ECCCCCCCCCCCCCEECHHHH
Q ss_conf             8311788887442----------148887227789871532331
Q gi|254780459|r    8 TKRTCPDTGKRFY----------DLNKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus         8 ~KR~C~~Cg~KFY----------Dlnk~PiiCP~CG~e~~~~~~   41 (129)
                      .|-+||+||+.|-          -+-=..+.||+|+..|.|..+
T Consensus        21 l~l~C~~C~~~~~f~gv~~~~~~~~~~~g~~C~~c~~~~~~~~i   64 (206)
T 3flo_B           21 LELSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQLFTPLQL   64 (206)
T ss_dssp             EEEECTTTCCEEEECSSSCCSSEEEETTEEEETTTCCBCCHHHH
T ss_pred             EEEECCCCCCCEECCCCCCCCCCCCEECCCCCCCCCCCCCHHHH
T ss_conf             78689999985037873036776200476788898995899999


No 24 
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase/structural protein complex; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B
Probab=90.89  E-value=0.092  Score=30.36  Aligned_cols=23  Identities=30%  Similarity=0.680  Sum_probs=18.8

Q ss_pred             CCCCCCCCCCEEEECCCCCCCCCCCCCE
Q ss_conf             8311788887442148887227789871
Q gi|254780459|r    8 TKRTCPDTGKRFYDLNKQVIVSPYTQNS   35 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~e   35 (129)
                      .=|.|++||.  |=|.   -+||.||..
T Consensus         4 ~irkC~~C~~--YTLk---~~CP~CG~~   26 (60)
T 2aus_D            4 RIRKCPKCGR--YTLK---ETCPVCGEK   26 (60)
T ss_dssp             CCEECTTTCC--EESS---SBCTTTCSB
T ss_pred             HHHCCCCCCC--EECC---CCCCCCCCC
T ss_conf             4114874666--6355---637678785


No 25 
>3bvo_A CO-chaperone protein HSCB, mitochondrial precursor; structural genomics medical relevance, protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=90.85  E-value=0.098  Score=30.18  Aligned_cols=30  Identities=10%  Similarity=0.083  Sum_probs=23.4

Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCEECHH
Q ss_conf             117888874421488872277898715323
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~   39 (129)
                      ..|.+||.+--=--...+.||+||+.++|.
T Consensus        11 ~~cw~c~~~~~~~~~~~~~C~~c~~~q~~~   40 (207)
T 3bvo_A           11 PRCWNCGGPWGPGREDRFFCPQCRALQAPD   40 (207)
T ss_dssp             CBCSSSCCBCCSSCSCCCBCTTTCCBCCCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             989999898665676575256556679998


No 26 
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=90.36  E-value=0.074  Score=30.95  Aligned_cols=29  Identities=21%  Similarity=0.394  Sum_probs=21.6

Q ss_pred             CCCCCCCCCCE-----EEECC--CCCCCCCCCCCEE
Q ss_conf             83117888874-----42148--8872277898715
Q gi|254780459|r    8 TKRTCPDTGKR-----FYDLN--KQVIVSPYTQNSW   36 (129)
Q Consensus         8 ~KR~C~~Cg~K-----FYDln--k~PiiCP~CG~e~   36 (129)
                      ...+|..|++.     |=.+.  ...+.||+||...
T Consensus       197 ~~~~C~gC~~~l~~~~~~~~~~~~~i~~C~~CgRiL  232 (256)
T 3na7_A          197 KKQACGGCFIRLNDKIYTEVLTSGDMITCPYCGRIL  232 (256)
T ss_dssp             BTTBCTTTCCBCCHHHHHHHHHSSSCEECTTTCCEE
T ss_pred             ECCCCCCCCCCCCHHHHHHHHCCCCEEECCCCCCEE
T ss_conf             599168878243899999988599904898999778


No 27 
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Neisseria meningitidis Z2491}
Probab=90.01  E-value=0.11  Score=30.00  Aligned_cols=30  Identities=30%  Similarity=0.533  Sum_probs=25.4

Q ss_pred             CCCCCCCCEE-EECCCCCCCCCCCCCEECHH
Q ss_conf             1178888744-21488872277898715323
Q gi|254780459|r   10 RTCPDTGKRF-YDLNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus        10 R~C~~Cg~KF-YDlnk~PiiCP~CG~e~~~~   39 (129)
                      -+||.|+.++ |+-++.-++|+.||..|++.
T Consensus         9 L~CP~ck~~L~~~~~~~eLvc~~~~~~YPI~   39 (68)
T 2jr6_A            9 LVCPVTKGRLEYHQDKQELWSRQAKLAYPIK   39 (68)
T ss_dssp             CBCSSSCCBCEEETTTTEEEETTTTEEEEEE
T ss_pred             HCCCCCCCEEEEECCCCEEECCCCCCCCCCC
T ss_conf             0787989872896889989718769656341


No 28 
>3ndi_A Methyltransferase; S-adenosylmethionine, kijanose, tetronitrose, tetradeoxysuga micromonospora chalcea, TCAB9, SUGA methylation; HET: SAM TMP; 1.50A {Micromonospora chalcea} PDB: 3ndj_A*
Probab=88.55  E-value=0.12  Score=29.67  Aligned_cols=27  Identities=22%  Similarity=0.315  Sum_probs=20.8

Q ss_pred             CCCCCCCCE---EEECCCCCC---------------------CCCCCCCEE
Q ss_conf             117888874---421488872---------------------277898715
Q gi|254780459|r   10 RTCPDTGKR---FYDLNKQVI---------------------VSPYTQNSW   36 (129)
Q Consensus        10 R~C~~Cg~K---FYDlnk~Pi---------------------iCP~CG~e~   36 (129)
                      +.|+-||.+   |++|++.|+                     .|..||..+
T Consensus        13 ~~C~iCgs~l~~~l~lg~~P~~~~f~~~~~~~~~~~~~L~l~~C~~Cg~vq   63 (416)
T 3ndi_A           13 TACRVCGGGVQEFLDLGRQPLSDRFRKPDELDDEFTYRLAVGRCDSCEMVQ   63 (416)
T ss_dssp             EECTTTCCEEEEEEEEEEEECTTCCBCTTSCSCCCEEEEEEEEETTTCCEE
T ss_pred             CCCCCCCCCCCEEEECCCCCCCCCCCCHHHCCCCCCCCCEEEECCCCCEEE
T ss_conf             899064976633077589986355789246675564563799889998088


No 29 
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=88.50  E-value=0.1  Score=30.11  Aligned_cols=33  Identities=24%  Similarity=0.297  Sum_probs=26.3

Q ss_pred             HHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEECH
Q ss_conf             22278311788887442148887227789871532
Q gi|254780459|r    4 PELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPL   38 (129)
Q Consensus         4 ~elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~   38 (129)
                      .+.+.-|.|..|++.|-+..  --.||.||..|=.
T Consensus        10 ~~~~~~~~C~~C~~~f~~~~--~~~C~~Cg~iFC~   42 (59)
T 1z60_A           10 EEYNGERFCYGCQGELKDQH--VYVCAVCQNVFCV   42 (59)
T ss_dssp             HHHCSCCEETTTTEECTTSE--EECCTTTTCCBCH
T ss_pred             CCCCCCCCCCCCCCCCCCCC--CEECCCCCCEECC
T ss_conf             11699889647698079986--6789889990066


No 30 
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=88.02  E-value=0.3  Score=27.18  Aligned_cols=32  Identities=6%  Similarity=0.057  Sum_probs=25.9

Q ss_pred             HHCCCCCCCCCCCEEEECCCCCCCCCCCCCEE
Q ss_conf             22783117888874421488872277898715
Q gi|254780459|r    5 ELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSW   36 (129)
Q Consensus         5 elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~   36 (129)
                      ..+.+=+|-.||+++-==-++||-|+.||.-+
T Consensus        24 ~~~v~YiCg~Cg~~~~l~~~d~IrC~~CG~RI   55 (70)
T 1twf_L           24 TATLKYICAECSSKLSLSRTDAVRCKDCGHRI   55 (70)
T ss_dssp             -CCCCEECSSSCCEECCCTTSTTCCSSSCCCC
T ss_pred             CCCEEEECCCCCCCEEECCCCCEECCCCCCEE
T ss_conf             85168888679981162899988778488577


No 31 
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=87.35  E-value=0.28  Score=27.39  Aligned_cols=36  Identities=8%  Similarity=-0.003  Sum_probs=26.9

Q ss_pred             CCCCCCCCCCEEEE----C-------CCCCCCCCCCCCEECHHHHHC
Q ss_conf             83117888874421----4-------888722778987153233101
Q gi|254780459|r    8 TKRTCPDTGKRFYD----L-------NKQVIVSPYTQNSWPLAYFEA   43 (129)
Q Consensus         8 ~KR~C~~Cg~KFYD----l-------nk~PiiCP~CG~e~~~~~~~~   43 (129)
                      .+..|+.||.+||-    |       +..|..||.||..|.-...++
T Consensus        33 ~~~~C~~C~k~~f~~~~~l~~H~~~h~~~~~~C~~C~k~F~~~~~L~   79 (96)
T 2ctd_A           33 GSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMK   79 (96)
T ss_dssp             SCEECTTTCSCEESSHHHHHHHHHHHCCCCCCCSSSCCCCSSHHHHH
T ss_pred             CCEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCHHHHH
T ss_conf             89799999935463999999999885897997998599667627799


No 32 
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=86.78  E-value=0.2  Score=28.25  Aligned_cols=31  Identities=19%  Similarity=0.227  Sum_probs=25.6

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCEECHHHHHCCC
Q ss_conf             17888874421488872277898715323310123
Q gi|254780459|r   11 TCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEAPT   45 (129)
Q Consensus        11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~~~   45 (129)
                      +||=|..-|+    +|+++++||+.|.-..+.+--
T Consensus       183 ~CPI~~~~m~----dPV~~~~CgHtfer~~I~~~l  213 (267)
T 3htk_C          183 TCPITCKPYE----APLISRKCNHVFDRDGIQNYL  213 (267)
T ss_dssp             BCTTTSSBCS----SEEEESSSCCEEEHHHHHHHS
T ss_pred             ECCCCCHHHH----CCCCCCCCCCEECHHHHHHHH
T ss_conf             8958483876----365448799843799999999


No 33 
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=86.49  E-value=0.4  Score=26.46  Aligned_cols=33  Identities=21%  Similarity=0.107  Sum_probs=27.0

Q ss_pred             HHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEE
Q ss_conf             222783117888874421488872277898715
Q gi|254780459|r    4 PELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSW   36 (129)
Q Consensus         4 ~elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~   36 (129)
                      ..|...-+|-.||+++-==-++||.|..||.-+
T Consensus        16 ~~~~v~YiCg~Cg~~~~ik~~d~IrCreCG~RI   48 (63)
T 3h0g_L           16 RPATMIYLCADCGARNTIQAKEVIRCRECGHRV   48 (63)
T ss_dssp             ---CCCCBCSSSCCBCCCCSSSCCCCSSSCCCC
T ss_pred             CCCCEEEECCCCCCCCEECCCCCEECCCCCCEE
T ss_conf             887469885358983152899987768488675


No 34 
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, ATP-binding cassette, cytoplasm; HET: ADP; 3.20A {Geobacillus stearothermophilus 10}
Probab=86.07  E-value=0.41  Score=26.37  Aligned_cols=36  Identities=22%  Similarity=0.326  Sum_probs=24.6

Q ss_pred             HCCCCCCCCCCCEEEEC-------CCCCCCCCCCCC-----EECHHHH
Q ss_conf             27831178888744214-------888722778987-----1532331
Q gi|254780459|r    6 LGTKRTCPDTGKRFYDL-------NKQVIVSPYTQN-----SWPLAYF   41 (129)
Q Consensus         6 lG~KR~C~~Cg~KFYDl-------nk~PiiCP~CG~-----e~~~~~~   41 (129)
                      +-++..||.||..|..+       |-.-=-||.|.-     .|++..+
T Consensus       264 ~s~~~~Cp~~g~~~~e~~p~~FSFNsP~GaCp~C~GlG~~~~iD~~~v  311 (972)
T 2r6f_A          264 FSEKHACPYCGFSIGELEPRLFSFNSPFGACPDCDGLGAKLEVDLDLV  311 (972)
T ss_dssp             EESSEECTTTCCEEECCCGGGGCSSSTTTBCTTTTSCCEEEEECHHHH
T ss_pred             EEECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEECCHHHC
T ss_conf             763046788897056687311687798857834527514020589993


No 35 
>2waq_P DNA-directed RNA polymerase RPO12 subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 3hkz_P
Probab=85.81  E-value=0.29  Score=27.34  Aligned_cols=28  Identities=25%  Similarity=0.301  Sum_probs=21.7

Q ss_pred             CCCCCCCCCEEEE--CCCC-CCCCCCCCCEE
Q ss_conf             3117888874421--4888-72277898715
Q gi|254780459|r    9 KRTCPDTGKRFYD--LNKQ-VIVSPYTQNSW   36 (129)
Q Consensus         9 KR~C~~Cg~KFYD--lnk~-PiiCP~CG~e~   36 (129)
                      +-.|..||+-|-+  |.+- -|-||+||.-+
T Consensus         3 iY~C~rCg~~~~~~eL~~LP~IrCPyCGfri   33 (48)
T 2waq_P            3 VYRCGKCWKTFTDEQLKVLPGVRCPYCGYKI   33 (48)
T ss_dssp             ---CCCCSSSCCCCCSCCCSSSSCTTTCCCC
T ss_pred             EEEECCCCCCCCHHHHHHCCCCCCCCCCCEE
T ss_conf             8884136778068788457886446357189


No 36 
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=85.80  E-value=0.44  Score=26.18  Aligned_cols=37  Identities=19%  Similarity=0.363  Sum_probs=28.0

Q ss_pred             CHHHCCCCCCCCCCCEE-EECCCCCCCCCCCCCEECHH
Q ss_conf             52227831178888744-21488872277898715323
Q gi|254780459|r    3 KPELGTKRTCPDTGKRF-YDLNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus         3 K~elG~KR~C~~Cg~KF-YDlnk~PiiCP~CG~e~~~~   39 (129)
                      .++|=-=-+||-|+.++ |+-++.-++|+.||..|++.
T Consensus         4 d~~LLeiL~CP~~k~~L~~~~~~~~Lvc~~~~~~YPI~   41 (67)
T 2jny_A            4 DPQLLEVLACPKDKGPLRYLESEQLLVNERLNLAYRID   41 (67)
T ss_dssp             CGGGTCCCBCTTTCCBCEEETTTTEEEETTTTEEEEEE
T ss_pred             CHHHHHHHCCCCCCCCCEEECCCCEEECCCCCCCCCCC
T ss_conf             97999884587989840696889989768768447351


No 37 
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=84.42  E-value=0.41  Score=26.37  Aligned_cols=33  Identities=15%  Similarity=0.152  Sum_probs=22.3

Q ss_pred             CCCCCCCCEEEECC---------CCCCCCCCCCCEECHHHHH
Q ss_conf             11788887442148---------8872277898715323310
Q gi|254780459|r   10 RTCPDTGKRFYDLN---------KQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        10 R~C~~Cg~KFYDln---------k~PiiCP~CG~e~~~~~~~   42 (129)
                      -.|+-||..|+-.+         -.|-.||.||..|.-...+
T Consensus        75 y~C~~C~k~F~~~~~L~~H~r~H~~~~~C~~C~k~F~~~~~L  116 (129)
T 2wbt_A           75 FVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKKEFTSTDSA  116 (129)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHTCCCCBCTTTCCBCSSHHHH
T ss_pred             EECCCCCCCCCCHHHHHHHHEECCCCEECCCCCCEECCHHHH
T ss_conf             188999987187446144623037983569998806988899


No 38 
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=84.22  E-value=0.36  Score=26.72  Aligned_cols=33  Identities=18%  Similarity=0.159  Sum_probs=24.7

Q ss_pred             CCHHHCCCC-CCCCCCCEEEECCCCCCCCCCCCCE
Q ss_conf             752227831-1788887442148887227789871
Q gi|254780459|r    2 AKPELGTKR-TCPDTGKRFYDLNKQVIVSPYTQNS   35 (129)
Q Consensus         2 aK~elG~KR-~C~~Cg~KFYDlnk~PiiCP~CG~e   35 (129)
                      +.++||.=+ .|++|+. .+-+.-.-+.||.||..
T Consensus       161 ~~~~LGVv~A~c~~c~~-~l~~~~~~m~C~~cg~~  194 (209)
T 2nn6_I          161 AENELGVVVAHSESGIQ-MVPISWCEMQCPKTHTK  194 (209)
T ss_dssp             CSSSCEECCCBCSSSCB-CEEEETTEEECTTTTCC
T ss_pred             CCCCCEEEEEECCCCCC-CEEECCCEEECCCCCCE
T ss_conf             18986899998889985-17766998899999996


No 39 
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4KFT4, structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens pf-5} SCOP: b.171.1.1
Probab=84.14  E-value=0.35  Score=26.85  Aligned_cols=30  Identities=17%  Similarity=0.276  Sum_probs=24.8

Q ss_pred             CCCCCCCCE-EEECCCCCCCCCCCCCEECHH
Q ss_conf             117888874-421488872277898715323
Q gi|254780459|r   10 RTCPDTGKR-FYDLNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus        10 R~C~~Cg~K-FYDlnk~PiiCP~CG~e~~~~   39 (129)
                      -+||.|+.+ .|+-.+.-++|+.||..|++.
T Consensus         9 L~CP~ck~~L~~~~~~~~Lvc~~~~~~YPI~   39 (69)
T 2pk7_A            9 LACPICKGPLKLSADKTELISKGAGLAYPIR   39 (69)
T ss_dssp             CCCTTTCCCCEECTTSSEEEETTTTEEEEEE
T ss_pred             HCCCCCCCEEEEECCCCEEECCCCCCEEECC
T ss_conf             1687999970696889979769878352330


No 40 
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=84.06  E-value=0.42  Score=26.30  Aligned_cols=28  Identities=14%  Similarity=0.166  Sum_probs=23.2

Q ss_pred             CCCCCCCCCEEEECCCCCCCCCCCCCEE
Q ss_conf             3117888874421488872277898715
Q gi|254780459|r    9 KRTCPDTGKRFYDLNKQVIVSPYTQNSW   36 (129)
Q Consensus         9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e~   36 (129)
                      .+.|..|++.|-=|.....+|..||.-|
T Consensus        55 ~~~C~~C~~~f~~l~~~~~~C~~C~~~v   82 (134)
T 1zbd_B           55 VNRCILCGEQLGMLGSASVVCEDCKKNV   82 (134)
T ss_dssp             SSBCSSSCCBCSTTSCCEEECTTTCCEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf             9919364984567678999479999421


No 41 
>2j01_5 50S ribosomal protein L32; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: g.41.8.5 PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=84.01  E-value=0.44  Score=26.20  Aligned_cols=21  Identities=19%  Similarity=0.376  Sum_probs=16.7

Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf             1178888744214888722778987
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQVIVSPYTQN   34 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~PiiCP~CG~   34 (129)
                      -.||+||.    +-+.=-+||+||.
T Consensus        31 ~~C~~CG~----~~~pHrvC~~CG~   51 (60)
T 2j01_5           31 VPCPECKA----MKPPHTVCPECGY   51 (60)
T ss_dssp             BCCSSSSS----CBCTTCBCTTTCC
T ss_pred             EECCCCCC----EECCCEECCCCCC
T ss_conf             68999997----0267368798981


No 42 
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=83.65  E-value=0.42  Score=26.30  Aligned_cols=32  Identities=16%  Similarity=0.355  Sum_probs=25.3

Q ss_pred             CCCCCCCCCCEE-EECCCCCCCCCCCCCEECHH
Q ss_conf             831178888744-21488872277898715323
Q gi|254780459|r    8 TKRTCPDTGKRF-YDLNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus         8 ~KR~C~~Cg~KF-YDlnk~PiiCP~CG~e~~~~   39 (129)
                      .--+||.|+.++ |+-.+.-++|+.|+..|++.
T Consensus         7 ~iL~CP~ck~~L~~~~~~~eLvc~~~~~aYPI~   39 (70)
T 2js4_A            7 DILVCPVCKGRLEFQRAQAELVCNADRLAFPVR   39 (70)
T ss_dssp             CCCBCTTTCCBEEEETTTTEEEETTTTEEEEEE
T ss_pred             HHHCCCCCCCEEEEECCCCEEECCCCCCCCCCC
T ss_conf             670687999872693889989548648656343


No 43 
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthesis, NESG, structural genomics, PSI-2; 1.90A {Chromobacterium violaceum atcc 12472} SCOP: b.171.1.1
Probab=83.42  E-value=0.4  Score=26.46  Aligned_cols=30  Identities=17%  Similarity=0.409  Sum_probs=24.4

Q ss_pred             CCCCCCCCEE-EECCCCCCCCCCCCCEECHH
Q ss_conf             1178888744-21488872277898715323
Q gi|254780459|r   10 RTCPDTGKRF-YDLNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus        10 R~C~~Cg~KF-YDlnk~PiiCP~CG~e~~~~   39 (129)
                      -.||.|+.++ |+-++.-++|+.||..|++.
T Consensus         9 L~CP~ck~~L~~~~~~~~Lvc~~~~laYPI~   39 (68)
T 2hf1_A            9 LVCPLCKGPLVFDKSKDELICKGDRLAFPIK   39 (68)
T ss_dssp             CBCTTTCCBCEEETTTTEEEETTTTEEEEEE
T ss_pred             HCCCCCCCEEEEECCCCEEECCCCCCCCCCC
T ss_conf             3687989861792889989648879555451


No 44 
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=82.65  E-value=0.77  Score=24.70  Aligned_cols=38  Identities=11%  Similarity=-0.068  Sum_probs=28.2

Q ss_pred             CCCHHHC---CCCCCCCCCCEEEECCCCCCCCCCCCCEECHH
Q ss_conf             9752227---83117888874421488872277898715323
Q gi|254780459|r    1 MAKPELG---TKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus         1 MaK~elG---~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~   39 (129)
                      |.++-|-   .-..|+.|+++|- |-+.--.|..||..|=..
T Consensus        10 ~~~~~W~pd~~~~~C~~C~~~F~-~~~rrhhCr~CG~~~C~~   50 (84)
T 1z2q_A           10 QSKGYWQEDEDAPACNGCGCVFT-TTVRRHHCRNCGYVLCGD   50 (84)
T ss_dssp             CCCSCCCCTTTCCBCTTTCCBCC-TTSCCEECTTTCCEECTG
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCHH
T ss_conf             57675878655881868899626-855574565587982956


No 45 
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=82.30  E-value=0.47  Score=26.03  Aligned_cols=31  Identities=16%  Similarity=0.169  Sum_probs=20.6

Q ss_pred             CCCCCCCCCEEEE------CCC----CCCCCCCCCCEECHH
Q ss_conf             3117888874421------488----872277898715323
Q gi|254780459|r    9 KRTCPDTGKRFYD------LNK----QVIVSPYTQNSWPLA   39 (129)
Q Consensus         9 KR~C~~Cg~KFYD------lnk----~PiiCP~CG~e~~~~   39 (129)
                      +-.|..||.+|+-      +.+    ....||.||...-|.
T Consensus       144 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~p~C~~Cgg~lrP~  184 (361)
T 1q14_A          144 HCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELVKPA  184 (361)
T ss_dssp             EEEETTTCCEECTHHHHHHTTSSSCSCCCBCTTTCCBEEEE
T ss_pred             EEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCC
T ss_conf             45778899818989998776426766687887778742687


No 46 
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=82.16  E-value=0.73  Score=24.85  Aligned_cols=35  Identities=11%  Similarity=0.270  Sum_probs=25.7

Q ss_pred             CCCHHHCC-CCCCCCCCCEEEECCCCCCCCCCCCCEE
Q ss_conf             97522278-3117888874421488872277898715
Q gi|254780459|r    1 MAKPELGT-KRTCPDTGKRFYDLNKQVIVSPYTQNSW   36 (129)
Q Consensus         1 MaK~elG~-KR~C~~Cg~KFYDlnk~PiiCP~CG~e~   36 (129)
                      ++.++||. +-.|++||.--. ....-+.||.||..-
T Consensus       131 t~~~~LGVv~a~c~~c~~~l~-~~~~~~~C~~cg~~e  166 (179)
T 3m7n_A          131 TKEEEMGVLRALCSNCKTEMV-REGDILKCPECGRVE  166 (179)
T ss_dssp             CCSTTCEEEECBCTTTCCBCE-ECSSSEECSSSCCEE
T ss_pred             ECCCCCCEEEEECCCCCCEEE-EECCEEECCCCCCEE
T ss_conf             628888579996787786077-709999999999878


No 47 
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=82.09  E-value=0.61  Score=25.32  Aligned_cols=29  Identities=17%  Similarity=0.300  Sum_probs=21.5

Q ss_pred             CCCCCCCCCCE-EEECCCCCCCCCCCCC-EE
Q ss_conf             83117888874-4214888722778987-15
Q gi|254780459|r    8 TKRTCPDTGKR-FYDLNKQVIVSPYTQN-SW   36 (129)
Q Consensus         8 ~KR~C~~Cg~K-FYDlnk~PiiCP~CG~-e~   36 (129)
                      ++|.||.||.= |-=-.++-..|=+||- +|
T Consensus        17 ~~k~CP~CG~GvFmA~H~dR~~CGKCgyTef   47 (55)
T 2k4x_A           17 KHRFCPRCGPGVFLAEHADRYSCGRCGYTEF   47 (55)
T ss_dssp             SSCCCTTTTTTCCCEECSSEEECTTTCCCEE
T ss_pred             ECCCCCCCCCCEEEEECCCCCCCCCCCCEEE
T ss_conf             3375989999477200589756367554488


No 48 
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=81.84  E-value=0.7  Score=24.96  Aligned_cols=29  Identities=10%  Similarity=0.187  Sum_probs=24.6

Q ss_pred             CCCCCCCCCCEEEECCCCCCCCCCCCCEEC
Q ss_conf             831178888744214888722778987153
Q gi|254780459|r    8 TKRTCPDTGKRFYDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~   37 (129)
                      .-+.|..|+++|- |.+..-.|..||..|=
T Consensus        18 ~~~~C~~C~~~F~-~~~rrhhCr~CG~~~C   46 (82)
T 2yw8_A           18 EATHCRQCEKEFS-ISRRKHHCRNCGHIFC   46 (82)
T ss_dssp             CCCBCTTTCCBCB-TTBCCEECTTTCCEEC
T ss_pred             CCCCCCCCCCCCC-CCCCCCCCCCCCCEEC
T ss_conf             4786926498141-7555633531694627


No 49 
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=81.78  E-value=0.59  Score=25.43  Aligned_cols=35  Identities=9%  Similarity=0.071  Sum_probs=26.5

Q ss_pred             CCCCCCCCCEEEEC-----------CCCCCCCCCCCCEECHHHHHC
Q ss_conf             31178888744214-----------888722778987153233101
Q gi|254780459|r    9 KRTCPDTGKRFYDL-----------NKQVIVSPYTQNSWPLAYFEA   43 (129)
Q Consensus         9 KR~C~~Cg~KFYDl-----------nk~PiiCP~CG~e~~~~~~~~   43 (129)
                      .-+|+.||..|.--           +..|-.||.||..|.-...+.
T Consensus         2 pf~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~F~~~~~l~   47 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLI   47 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHH
T ss_pred             CCCCCCCCCEECCHHHHHHHHHHCCCCCCEECCCCCCEECCHHHHH
T ss_conf             4718988888098999999975506788847898989948889999


No 50 
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondrial; NAD dependent deacetylase, sirtuin, substrate peptide complex, hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A
Probab=81.39  E-value=0.41  Score=26.41  Aligned_cols=31  Identities=16%  Similarity=0.195  Sum_probs=22.3

Q ss_pred             CCCCCCCCCEEEE-------CCCCCCCCCCCCCEECHH
Q ss_conf             3117888874421-------488872277898715323
Q gi|254780459|r    9 KRTCPDTGKRFYD-------LNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus         9 KR~C~~Cg~KFYD-------lnk~PiiCP~CG~e~~~~   39 (129)
                      +-.|..|+.+|--       +...+..||.||...-|.
T Consensus       139 ~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~Cgg~lrP~  176 (285)
T 3glr_A          139 SATCTVCQRPFPGEDIRADVMADRVPRCPVCTGVVKPD  176 (285)
T ss_dssp             EEEETTTCCEEEGGGGHHHHHTTCCCBCTTTCCBEEEE
T ss_pred             EEEECCCCCCCCCHHHEEEECCCCCCCCCCCCCCEEEE
T ss_conf             56858989985321320010267789860126722100


No 51 
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.91  E-value=0.22  Score=28.04  Aligned_cols=36  Identities=11%  Similarity=0.105  Sum_probs=25.5

Q ss_pred             CCCCCCCCCCEEEE----CCC---------CCCCCCCCCCEECHHHHHC
Q ss_conf             83117888874421----488---------8722778987153233101
Q gi|254780459|r    8 TKRTCPDTGKRFYD----LNK---------QVIVSPYTQNSWPLAYFEA   43 (129)
Q Consensus         8 ~KR~C~~Cg~KFYD----lnk---------~PiiCP~CG~e~~~~~~~~   43 (129)
                      .+.+|+.||.+||-    |.+         .|-.|+.||..|.-...++
T Consensus        23 ~~~~C~~C~k~~~~~~~~L~~H~~~~h~~~~~~~C~~C~k~F~~~~~L~   71 (98)
T 2gqj_A           23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLN   71 (98)
T ss_dssp             SCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHH
T ss_pred             CCEECCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHH
T ss_conf             8989999997305589999999998628988999919798018469999


No 52 
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=80.61  E-value=0.82  Score=24.54  Aligned_cols=27  Identities=19%  Similarity=0.231  Sum_probs=22.8

Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCEEC
Q ss_conf             1178888744214888722778987153
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~   37 (129)
                      ..|+.|+++|= |-+.-..|-.||..|=
T Consensus        70 ~~C~~C~~~Fs-~~~rkhhCr~CG~i~C   96 (125)
T 1joc_A           70 QNCMACGKGFS-VTVRRHHCRQCGNIFC   96 (125)
T ss_dssp             CBCTTTCCBCC-SSSCCEECTTTCCEEC
T ss_pred             CCCCCCCCCCC-CCCCCCCCCCCCCEEC
T ss_conf             70757597456-8778937523687049


No 53 
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=80.51  E-value=0.58  Score=25.46  Aligned_cols=33  Identities=12%  Similarity=0.242  Sum_probs=26.8

Q ss_pred             HHCCCCCCCCCCCEEEECCCCCCCCCCCCCEECH
Q ss_conf             2278311788887442148887227789871532
Q gi|254780459|r    5 ELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPL   38 (129)
Q Consensus         5 elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~   38 (129)
                      -+++...|..||++|= |-+..-.|-.||..|=-
T Consensus        15 P~~~~~~C~~C~~~F~-~~~Rkh~Cr~Cg~~fC~   47 (120)
T 1y02_A           15 PTGLEPSCKSCGAHFA-NTARKQTCLDCKKNFCM   47 (120)
T ss_dssp             -----CCCTTTCCCCS-SGGGCEECTTTCCEECG
T ss_pred             CCCCCCCCCCCCCCCC-CCCCCCCCCCCCCEECC
T ss_conf             9202698714291001-87775423358987630


No 54 
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=79.78  E-value=0.8  Score=24.61  Aligned_cols=34  Identities=18%  Similarity=0.154  Sum_probs=26.5

Q ss_pred             CCCCCCCCCEEEEC-----------CCCCCCCCCCCCEECHHHHH
Q ss_conf             31178888744214-----------88872277898715323310
Q gi|254780459|r    9 KRTCPDTGKRFYDL-----------NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus         9 KR~C~~Cg~KFYDl-----------nk~PiiCP~CG~e~~~~~~~   42 (129)
                      |=.|+-||..|...           +..|-.|+.||..|.-...+
T Consensus         1 ry~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~L   45 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNL   45 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHCCCCCCEECCCCCCEECCHHHH
T ss_conf             932688999178599999999870999870689998886878899


No 55 
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=79.64  E-value=0.57  Score=25.53  Aligned_cols=31  Identities=16%  Similarity=0.131  Sum_probs=21.2

Q ss_pred             CCCCCCCCCEE-EEC--------CCCCCCCCCCCCEECHH
Q ss_conf             31178888744-214--------88872277898715323
Q gi|254780459|r    9 KRTCPDTGKRF-YDL--------NKQVIVSPYTQNSWPLA   39 (129)
Q Consensus         9 KR~C~~Cg~KF-YDl--------nk~PiiCP~CG~e~~~~   39 (129)
                      +-.|.+|+.++ |++        ...+..||.||..+-|.
T Consensus       159 ~~~C~~c~~~~~~~~~~~~~~~~~~~~p~C~~Cgg~lKPd  198 (323)
T 1j8f_A          159 TSHCVSASCRHEYPLSWMKEKIFSEVTPKCEDCQSLVKPD  198 (323)
T ss_dssp             EEEESCTTTCCEECHHHHHHHHHTTCCCBCTTTCCBEEEE
T ss_pred             EEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCEECCC
T ss_conf             2566378887555326666664047898886789802785


No 56 
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=79.32  E-value=0.75  Score=24.80  Aligned_cols=30  Identities=23%  Similarity=0.546  Sum_probs=24.1

Q ss_pred             HHCC-CCCCCCCCCEEEECCCCCCCCCC--CCC
Q ss_conf             2278-31178888744214888722778--987
Q gi|254780459|r    5 ELGT-KRTCPDTGKRFYDLNKQVIVSPY--TQN   34 (129)
Q Consensus         5 elG~-KR~C~~Cg~KFYDlnk~PiiCP~--CG~   34 (129)
                      +.|- +++|+.||+.|+=++..--+|+-  |+.
T Consensus        15 ~~g~~r~~c~~c~~~fw~~~~~r~~c~d~~c~~   47 (739)
T 2ztg_A           15 ENGFVRKRCPKCGKHFWTADPEREICGDPPCES   47 (739)
T ss_dssp             TTTCEEECCCSSSSCEEECCSSCCCCCSSSSCC
T ss_pred             HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             569152347545785004698857799899988


No 57 
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; HET: MSE; 2.20A {Escherichia coli K12} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=79.17  E-value=0.26  Score=27.57  Aligned_cols=28  Identities=14%  Similarity=0.292  Sum_probs=20.9

Q ss_pred             HHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEE
Q ss_conf             222783117888874421488872277898715
Q gi|254780459|r    4 PELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSW   36 (129)
Q Consensus         4 ~elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~   36 (129)
                      .+-|.+|.|++||..+|     |-+.|.+...+
T Consensus       120 ~~~~~~~~C~~C~~~~y-----P~~~p~vivli  147 (269)
T 1vk6_A          120 SKTEWAMLCSHCRERYY-----PQIAPCIIVAI  147 (269)
T ss_dssp             CSSSSCEEESSSSCEEC-----CCCEEEEEEEE
T ss_pred             CCCCEEEECCCCCCCCC-----CCCCCEEEEEE
T ss_conf             67980488989988568-----87686599999


No 58 
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 1nwy_Z* 1nwx_Z* 1xbp_Z* 1pnu_Z ...
Probab=79.09  E-value=0.64  Score=25.20  Aligned_cols=21  Identities=14%  Similarity=0.253  Sum_probs=15.9

Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf             1178888744214888722778987
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQVIVSPYTQN   34 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~PiiCP~CG~   34 (129)
                      -.||+||.    +-+.=-+||.||.
T Consensus        31 ~~C~~cG~----~~~~H~vc~~CG~   51 (60)
T 2zjr_Z           31 TECPQCHG----KKLSHHICPNCGY   51 (60)
T ss_dssp             EECTTTCC----EECTTBCCTTTCB
T ss_pred             EECCCCCC----CCCCCEECCCCCC
T ss_conf             68899998----6367267798980


No 59 
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=79.03  E-value=1.6  Score=22.76  Aligned_cols=29  Identities=14%  Similarity=0.244  Sum_probs=23.0

Q ss_pred             CCCCCCCCCCEEEECCC--CCCCCCCCCCEE
Q ss_conf             83117888874421488--872277898715
Q gi|254780459|r    8 TKRTCPDTGKRFYDLNK--QVIVSPYTQNSW   36 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDlnk--~PiiCP~CG~e~   36 (129)
                      .|-.||.|+.-=-=|.+  +++.|..||+.+
T Consensus         6 ~~VkCp~C~n~qiVFShA~t~V~C~~Cgt~L   36 (66)
T 1qxf_A            6 VKVKCPDCEHEQVIFDHPSTIVKCIICGRTV   36 (66)
T ss_dssp             EEEECTTTCCEEEEESSCSSCEECSSSCCEE
T ss_pred             EEEECCCCCCEEEEEECCCCEEECCCCCCEE
T ss_conf             8849999997157981698168851228777


No 60 
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=78.71  E-value=0.95  Score=24.15  Aligned_cols=32  Identities=6%  Similarity=-0.045  Sum_probs=21.5

Q ss_pred             CCCCCCCCCEEEE---CC-CCCCCCCCCCCEECHHH
Q ss_conf             3117888874421---48-88722778987153233
Q gi|254780459|r    9 KRTCPDTGKRFYD---LN-KQVIVSPYTQNSWPLAY   40 (129)
Q Consensus         9 KR~C~~Cg~KFYD---ln-k~PiiCP~CG~e~~~~~   40 (129)
                      +-.|+.|+.+|.=   .. .....||.||...-|..
T Consensus       121 ~~~C~~c~~~~~~~~~~~~~~~P~C~~Cgg~lrP~V  156 (249)
T 1m2k_A          121 VVRCTSCNNSFEVESAPKIPPLPKCDKCGSLLRPGV  156 (249)
T ss_dssp             EEEESSSSCEEECSSCCCSSSCCBCSSSSSBEEEEE
T ss_pred             EEEECCCCCEEEHHHHCCCCCCCCCCCCCCCCCCCE
T ss_conf             579899898422122011689998656899857878


No 61 
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=78.31  E-value=0.86  Score=24.41  Aligned_cols=30  Identities=20%  Similarity=0.334  Sum_probs=23.0

Q ss_pred             HHCC-CCCCCCCCCEEEECCCCCCCCC--CCCC
Q ss_conf             2278-3117888874421488872277--8987
Q gi|254780459|r    5 ELGT-KRTCPDTGKRFYDLNKQVIVSP--YTQN   34 (129)
Q Consensus         5 elG~-KR~C~~Cg~KFYDlnk~PiiCP--~CG~   34 (129)
                      +.|- +++|+.||..|+=++..--+|+  -|+.
T Consensus        12 ~~g~~r~~c~~c~~~fw~~~~~~~~c~d~~c~~   44 (752)
T 2zze_A           12 EEGWIRXXCXVCGXPFWTLDPDRETCGDPPCDE   44 (752)
T ss_dssp             HTTCEEEECTTTCCEEEESCTTCCSCSSTTTSC
T ss_pred             HCCCEEEECCCCCCCEECCCCCCCCCCCCCCCC
T ss_conf             669355200136873004799867789899977


No 62 
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} SCOP: b.40.4.15 PDB: 3irb_A
Probab=77.78  E-value=0.75  Score=24.80  Aligned_cols=23  Identities=13%  Similarity=0.192  Sum_probs=17.7

Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCE
Q ss_conf             11788887442148887227789871
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQVIVSPYTQNS   35 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~PiiCP~CG~e   35 (129)
                      +.|.+||+.||==.  + +||.||..
T Consensus        48 ~rC~~Cg~~~~Ppr--~-~Cp~C~s~   70 (145)
T 2gnr_A           48 SKCSKCGRIFVPAR--S-YCEHCFVK   70 (145)
T ss_dssp             EECTTTCCEEESCC--S-EETTTTEE
T ss_pred             EECCCCCCEEECCC--C-CCCCCCCC
T ss_conf             98799995883960--1-17799998


No 63 
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=77.41  E-value=0.91  Score=24.28  Aligned_cols=31  Identities=19%  Similarity=0.190  Sum_probs=20.7

Q ss_pred             CCCCCCCCCEEEE------CC----CCCCCCCCCCCEECHH
Q ss_conf             3117888874421------48----8872277898715323
Q gi|254780459|r    9 KRTCPDTGKRFYD------LN----KQVIVSPYTQNSWPLA   39 (129)
Q Consensus         9 KR~C~~Cg~KFYD------ln----k~PiiCP~CG~e~~~~   39 (129)
                      +-.|.+|+.+|.-      +.    +....||.||...-|.
T Consensus       136 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~p~C~~Cgg~lrP~  176 (289)
T 1q1a_A          136 HCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELVKPA  176 (289)
T ss_dssp             EEEETTTCCEECHHHHHHHHTCSSCCSCCBCTTTCCBEEEE
T ss_pred             CCEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCC
T ss_conf             21658999828889998766426766688777768887761


No 64 
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.26  E-value=0.73  Score=24.84  Aligned_cols=29  Identities=14%  Similarity=0.174  Sum_probs=22.5

Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCEECHHHHH
Q ss_conf             117888874421488872277898715323310
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~   42 (129)
                      -+||=|..-|.|    |+++|.||+.|--.-+.
T Consensus         8 l~CpIc~~~~~d----PV~~~~CgH~fcr~cI~   36 (94)
T 2yu4_A            8 FTCPITKEEMKK----PVKNKVCGHTYEEDAIV   36 (94)
T ss_dssp             CBCTTTCSBCSS----EEEESSSCCEEEHHHHH
T ss_pred             CCCCCCCCHHHC----CCCCCCCCCHHHHHHHH
T ss_conf             499251947548----86768784556199999


No 65 
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.24  E-value=1.1  Score=23.66  Aligned_cols=28  Identities=18%  Similarity=0.174  Sum_probs=22.9

Q ss_pred             CCCCCCCCCEEEECCCCCCCCCCCCCEEC
Q ss_conf             31178888744214888722778987153
Q gi|254780459|r    9 KRTCPDTGKRFYDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus         9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~   37 (129)
                      -..|..|+++|- |-+..-.|-.||..|=
T Consensus        14 ~~~C~~C~~~F~-~~~rrhhCr~CG~v~C   41 (84)
T 1x4u_A           14 FGNCTGCSATFS-VLKKRRSCSNCGNSFC   41 (84)
T ss_dssp             CSSCSSSCCCCC-SSSCCEECSSSCCEEC
T ss_pred             CCCCCCCCCEEC-CCCCCCCCCCCCCEEC
T ss_conf             397758689002-8756776666898589


No 66 
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=77.09  E-value=1.3  Score=23.25  Aligned_cols=29  Identities=14%  Similarity=0.082  Sum_probs=20.9

Q ss_pred             CCCCCCCCCEEE--------ECCCCCCCCCCCCCEEC
Q ss_conf             311788887442--------14888722778987153
Q gi|254780459|r    9 KRTCPDTGKRFY--------DLNKQVIVSPYTQNSWP   37 (129)
Q Consensus         9 KR~C~~Cg~KFY--------Dlnk~PiiCP~CG~e~~   37 (129)
                      ...|++|+..+-        +.++.-..||+||....
T Consensus        78 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~cg~~~~  114 (166)
T 3ir9_A           78 TTKCSVCGYENKWTRRWKPGEPAPAAGNCPKCGSSLE  114 (166)
T ss_dssp             EEEESSSSCEEEEEECCCC--CCCCCCBCTTTCCBEE
T ss_pred             EEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHH
T ss_conf             9975898744778761354223333456854463021


No 67 
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y*
Probab=76.89  E-value=1.1  Score=23.82  Aligned_cols=29  Identities=17%  Similarity=0.579  Sum_probs=22.0

Q ss_pred             CCCCCCCCCCCEEEECCCC---CCCCCCCCCEEC
Q ss_conf             7831178888744214888---722778987153
Q gi|254780459|r    7 GTKRTCPDTGKRFYDLNKQ---VIVSPYTQNSWP   37 (129)
Q Consensus         7 G~KR~C~~Cg~KFYDlnk~---PiiCP~CG~e~~   37 (129)
                      -.|++||.||..  -+.|.   -=.|.+||..|.
T Consensus        58 ~aky~CpfCgk~--~vkR~a~GIW~C~kCg~~~A   89 (116)
T 3cc2_Z           58 NEDHACPNCGED--RVDRQGTGIWQCSYCDYKFT   89 (116)
T ss_dssp             HSCEECSSSCCE--EEEEEETTEEEETTTCCEEE
T ss_pred             CCCCCCCCCCCC--CEEEEEEEEEECCCCCCEEE
T ss_conf             079609888998--03889989987489898885


No 68 
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=76.63  E-value=1.9  Score=22.27  Aligned_cols=30  Identities=13%  Similarity=0.164  Sum_probs=21.9

Q ss_pred             CCCCCCCCEEEEC----CC-CCCCCCCCCCEECHH
Q ss_conf             1178888744214----88-872277898715323
Q gi|254780459|r   10 RTCPDTGKRFYDL----NK-QVIVSPYTQNSWPLA   39 (129)
Q Consensus        10 R~C~~Cg~KFYDl----nk-~PiiCP~CG~e~~~~   39 (129)
                      |-||.||.-.|=.    ++ --..|+.||.++...
T Consensus         5 ~FCp~C~nmL~~~~~~~~~~l~~~C~~C~y~~~~~   39 (113)
T 3h0g_I            5 QYCIECNNMLYPREDKVDRVLRLACRNCDYSEIAA   39 (113)
T ss_dssp             CCCSSSCCCCEECCCTTTCCCCEECSSSCCEECCS
T ss_pred             CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC
T ss_conf             87746574663646898868889899998310068


No 69 
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=76.56  E-value=1.4  Score=23.17  Aligned_cols=30  Identities=20%  Similarity=0.285  Sum_probs=19.1

Q ss_pred             CCCCCCCEEEEC-----------CCCCCCCCCCCCEECHHH
Q ss_conf             178888744214-----------888722778987153233
Q gi|254780459|r   11 TCPDTGKRFYDL-----------NKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus        11 ~C~~Cg~KFYDl-----------nk~PiiCP~CG~e~~~~~   40 (129)
                      .|+.||.+|...           +..|-.||.||..|.-..
T Consensus         9 ~C~~C~k~F~~~~~l~~H~~~H~~~~~~~C~~C~~~f~~~~   49 (95)
T 2yt9_A            9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKD   49 (95)
T ss_dssp             ECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCH
T ss_conf             99999878398999999998718998853688887421246


No 70 
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=76.45  E-value=1.4  Score=23.14  Aligned_cols=35  Identities=11%  Similarity=0.076  Sum_probs=27.0

Q ss_pred             CHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEECH
Q ss_conf             522278311788887442148887227789871532
Q gi|254780459|r    3 KPELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPL   38 (129)
Q Consensus         3 K~elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~   38 (129)
                      .|.|=-=..|..|+++| -|-+..-.|-.||..|=.
T Consensus         5 pp~W~~~~~C~~C~~~F-~~~~rkhhCr~Cg~~~C~   39 (73)
T 1vfy_A            5 PADWIDSDACMICSKKF-SLLNRKHHCRSCGGVFCQ   39 (73)
T ss_dssp             --CCCCCSBCTTTCCBC-BTTBCCEECTTTCCEECG
T ss_pred             CCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCEECH
T ss_conf             88887896445789805-175556357579988491


No 71 
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=76.12  E-value=1.4  Score=23.10  Aligned_cols=33  Identities=12%  Similarity=0.140  Sum_probs=24.4

Q ss_pred             CCCCCCCCEEEEC---------------CCCCCCCCCCCCEECHHHHH
Q ss_conf             1178888744214---------------88872277898715323310
Q gi|254780459|r   10 RTCPDTGKRFYDL---------------NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        10 R~C~~Cg~KFYDl---------------nk~PiiCP~CG~e~~~~~~~   42 (129)
                      -.|+.||..|.-.               .+.|..|+.||..|.-...+
T Consensus        16 ~~C~~C~k~F~~~~~L~~H~~~~h~~~~~~~~~~C~~C~k~F~~~~~L   63 (86)
T 1x6h_A           16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTM   63 (86)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHH
T ss_pred             EECCCCCCEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCHHHH
T ss_conf             058999885166265888878863776567787168879662679999


No 72 
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=76.08  E-value=1.3  Score=23.32  Aligned_cols=24  Identities=21%  Similarity=0.326  Sum_probs=18.7

Q ss_pred             CCCCCCCCEEEECCCCC---CCCCCCC
Q ss_conf             11788887442148887---2277898
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQV---IVSPYTQ   33 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~P---iiCP~CG   33 (129)
                      ..|..||..|-=-+-.|   .+||-|.
T Consensus       135 ~~C~~Cgg~fv~~~~~~~~~f~C~lC~  161 (192)
T 2avu_E          135 SSCNCCGGNFITHAHQPVGSFACSLCQ  161 (192)
T ss_dssp             EECTTTCCEEEEESSCCSSCCCCTTC-
T ss_pred             CCCCCCCCCEECCCCCCCCCCCCCCCC
T ss_conf             657878995155666667687389999


No 73 
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=75.90  E-value=1.3  Score=23.38  Aligned_cols=28  Identities=7%  Similarity=-0.009  Sum_probs=20.9

Q ss_pred             CCCCCCCCEEEEC-----CCCCCCCCCCCC-EEC
Q ss_conf             1178888744214-----888722778987-153
Q gi|254780459|r   10 RTCPDTGKRFYDL-----NKQVIVSPYTQN-SWP   37 (129)
Q Consensus        10 R~C~~Cg~KFYDl-----nk~PiiCP~CG~-e~~   37 (129)
                      -.|+.||..++-.     -+.|-.||.||. .|.
T Consensus       135 ~~C~~C~~~~~~~~~~~~~~~p~~c~~C~~~~f~  168 (279)
T 1ltl_A          135 FECRGCMRHHAVTQSTNMITEPSLCSECGGRSFR  168 (279)
T ss_dssp             EEETTTCCEEEEECSSSSCCCCSCCTTTCCCCEE
T ss_pred             EECCCCCCEEEEECCCCCCCCCCCCCCCCCCCEE
T ss_conf             9958888558885178812488768777885327


No 74 
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=75.73  E-value=1.4  Score=23.12  Aligned_cols=34  Identities=12%  Similarity=0.169  Sum_probs=26.3

Q ss_pred             CCCCCCCCCEEEEC-----------CCCCCCCCCCCCEECHHHHH
Q ss_conf             31178888744214-----------88872277898715323310
Q gi|254780459|r    9 KRTCPDTGKRFYDL-----------NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus         9 KR~C~~Cg~KFYDl-----------nk~PiiCP~CG~e~~~~~~~   42 (129)
                      .-.|+.||..|...           +..|-.|+.||..|.-...+
T Consensus        18 ~~~C~~C~~~f~~~~~l~~H~~~H~~~~~y~C~~C~k~F~~~~~L   62 (77)
T 2cot_A           18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHL   62 (77)
T ss_dssp             SSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHH
T ss_pred             CCCCCCCCCEECCHHHHHHHHHHHCCCCCCCCCCCCCEECCHHHH
T ss_conf             808999999858766748999860788887589888861888999


No 75 
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.10A {Pseudomonas aeruginosa PAO1} SCOP: e.59.1.1
Probab=75.12  E-value=1.1  Score=23.76  Aligned_cols=35  Identities=14%  Similarity=0.290  Sum_probs=20.2

Q ss_pred             HHHCCCCCCCCCCCEE--EEC-------CCCCCCCCCCCCEECH
Q ss_conf             2227831178888744--214-------8887227789871532
Q gi|254780459|r    4 PELGTKRTCPDTGKRF--YDL-------NKQVIVSPYTQNSWPL   38 (129)
Q Consensus         4 ~elG~KR~C~~Cg~KF--YDl-------nk~PiiCP~CG~e~~~   38 (129)
                      ++.+.+..||-||..=  ==+       ++.=..|.-||++|.-
T Consensus       177 ~~~~~~g~CPvCGs~P~~s~l~~~~~~~G~R~L~CslC~teW~~  220 (309)
T 2fiy_A          177 VETESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHY  220 (309)
T ss_dssp             CCCTTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEEC
T ss_pred             CCCCCCCCCCCCCCCCHHHEEECCCCCCCCEEEECCCCCCCCCE
T ss_conf             77766994999998031032423687778568876888884520


No 76 
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=75.02  E-value=1.4  Score=23.21  Aligned_cols=33  Identities=6%  Similarity=0.021  Sum_probs=25.4

Q ss_pred             CCCCCCCCEEEEC-----------CCCCCCCCCCCCEECHHHHH
Q ss_conf             1178888744214-----------88872277898715323310
Q gi|254780459|r   10 RTCPDTGKRFYDL-----------NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        10 R~C~~Cg~KFYDl-----------nk~PiiCP~CG~e~~~~~~~   42 (129)
                      -.|+.||..|.-.           +..|-.||.||..|.-...+
T Consensus         4 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k~f~~~~~l   47 (88)
T 1llm_C            4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDER   47 (88)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHH
T ss_pred             CCCCCCCCEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
T ss_conf             12999986509799999999980899877554444544788999


No 77 
>2zkr_z 60S ribosomal protein L37A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1ysh_D
Probab=74.24  E-value=0.76  Score=24.74  Aligned_cols=29  Identities=17%  Similarity=0.189  Sum_probs=21.7

Q ss_pred             CCCCCCCCCCEEEECCCCC---CCCCCCCCEECH
Q ss_conf             8311788887442148887---227789871532
Q gi|254780459|r    8 TKRTCPDTGKRFYDLNKQV---IVSPYTQNSWPL   38 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDlnk~P---iiCP~CG~e~~~   38 (129)
                      .|++||.||..  -+.|.-   -.|.+||..|.-
T Consensus        35 ~ky~Cp~Cgk~--~vkR~a~GIW~C~kC~~~~AG   66 (92)
T 2zkr_z           35 AKYTCSFCGKT--KMKRRAVGIWHCGSCMKTVAG   66 (92)
T ss_dssp             SCBCCSSSCSS--CEEEEETTEEEETTTCCEEEC
T ss_pred             CCCCCCCCCCC--EEEEEEEEEEECCCCCCEEEC
T ss_conf             78509999998--778899888684799998856


No 78 
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=73.37  E-value=1.3  Score=23.36  Aligned_cols=32  Identities=9%  Similarity=0.097  Sum_probs=23.5

Q ss_pred             CCCCCCCCCCE-EEECCCCCCCCCCCCCEECHH
Q ss_conf             83117888874-421488872277898715323
Q gi|254780459|r    8 TKRTCPDTGKR-FYDLNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus         8 ~KR~C~~Cg~K-FYDlnk~PiiCP~CG~e~~~~   39 (129)
                      .=-.||-|+.+ .|+=...-.+|+.||-.|++.
T Consensus         9 ~iL~CP~ck~~L~~~~~~~~L~c~~~~laYPI~   41 (56)
T 2kpi_A            9 EILACPACHAPLEERDAELICTGQDCGLAYPVR   41 (56)
T ss_dssp             TSCCCSSSCSCEEEETTEEEECSSSCCCEEEEE
T ss_pred             HHHCCCCCCCCCEECCCCCEEECCCCCEEEECC
T ss_conf             773388999945182876889738888354450


No 79 
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=73.16  E-value=1.8  Score=22.44  Aligned_cols=34  Identities=15%  Similarity=-0.000  Sum_probs=25.1

Q ss_pred             CCCCCCCCCEEEEC-------------CCCCCCCCCCCCEECHHHHH
Q ss_conf             31178888744214-------------88872277898715323310
Q gi|254780459|r    9 KRTCPDTGKRFYDL-------------NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus         9 KR~C~~Cg~KFYDl-------------nk~PiiCP~CG~e~~~~~~~   42 (129)
                      .-.|+.|+.+|.-.             +..|..||.|+..|.-...+
T Consensus        15 py~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L   61 (77)
T 2ct1_A           15 PYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL   61 (77)
T ss_dssp             SEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHEEEEEECCCCCCEECCCCCCEECCHHHH
T ss_conf             80897999701405754321664304687170898999983999999


No 80 
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=73.11  E-value=1.7  Score=22.66  Aligned_cols=34  Identities=12%  Similarity=0.070  Sum_probs=26.1

Q ss_pred             CCCCCCCCCEEEEC-----------CCCCCCCCCCCCEECHHHHH
Q ss_conf             31178888744214-----------88872277898715323310
Q gi|254780459|r    9 KRTCPDTGKRFYDL-----------NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus         9 KR~C~~Cg~KFYDl-----------nk~PiiCP~CG~e~~~~~~~   42 (129)
                      .-.|+-|+..|...           +..|-.|+.||..|.-...+
T Consensus        14 py~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L   58 (72)
T 1x6e_A           14 PYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGL   58 (72)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHH
T ss_pred             CCCCCCCCCEECCHHHHHHHHHHHCCCCCEECCCCCCCCCCHHHH
T ss_conf             817999988739899999999873688463889898960888999


No 81 
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=73.00  E-value=1.7  Score=22.66  Aligned_cols=29  Identities=17%  Similarity=0.295  Sum_probs=16.4

Q ss_pred             CCCCCCCEEEEC-----------CCCCCCCCCCCCEECHH
Q ss_conf             178888744214-----------88872277898715323
Q gi|254780459|r   11 TCPDTGKRFYDL-----------NKQVIVSPYTQNSWPLA   39 (129)
Q Consensus        11 ~C~~Cg~KFYDl-----------nk~PiiCP~CG~e~~~~   39 (129)
                      .|+.||..|...           +..|..||.|+..|.-.
T Consensus         3 ~C~~C~k~F~~~~~l~~H~~~H~~~~~~~C~~C~~~f~~~   42 (82)
T 2kmk_A            3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQK   42 (82)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCCCH
T ss_conf             8899988849899999999970899886489889754425


No 82 
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=72.48  E-value=1.3  Score=23.34  Aligned_cols=32  Identities=16%  Similarity=0.339  Sum_probs=20.3

Q ss_pred             CCCCCCCEEEE------------CCCCCCCCCC--CCCEECHHHHH
Q ss_conf             17888874421------------4888722778--98715323310
Q gi|254780459|r   11 TCPDTGKRFYD------------LNKQVIVSPY--TQNSWPLAYFE   42 (129)
Q Consensus        11 ~C~~Cg~KFYD------------lnk~PiiCP~--CG~e~~~~~~~   42 (129)
                      .|+.||+.|..            .+..|..||.  ||..|.-...+
T Consensus        11 ~~~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~~~C~k~F~~~~~L   56 (79)
T 2dlk_A           11 DFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHL   56 (79)
T ss_dssp             SSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHH
T ss_pred             CCCCCCCEECCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf             8899989819889998757323699987137889989723778899


No 83 
>3jwp_A Transcriptional regulatory protein SIR2 homologue; malaria, transcription regulation, structural genomics, structural genomics consortium; HET: AMP PGE; 2.65A {Plasmodium falciparum}
Probab=72.19  E-value=1.6  Score=22.80  Aligned_cols=30  Identities=10%  Similarity=0.074  Sum_probs=19.9

Q ss_pred             CCCCCCCCCEEEE-----------CCCCCCCCCCCCCEECHH
Q ss_conf             3117888874421-----------488872277898715323
Q gi|254780459|r    9 KRTCPDTGKRFYD-----------LNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus         9 KR~C~~Cg~KFYD-----------lnk~PiiCP~CG~e~~~~   39 (129)
                      +-.|+.|+.+|.-           ....|.-|| ||...-|.
T Consensus       129 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~~p~c~-Cgg~lrP~  169 (265)
T 3jwp_A          129 EAVCCTCNKIVKLNKIMLQKTSHFMHQLPPECP-CGGIFKPN  169 (265)
T ss_dssp             EEEETTTCCEEECCHHHHSTTSSTTTSSSCBCT-TSCBEEEE
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCC-CCCCCCCC
T ss_conf             567478898743425443211221157898778-79856887


No 84 
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=70.60  E-value=1.2  Score=23.59  Aligned_cols=31  Identities=10%  Similarity=0.005  Sum_probs=20.6

Q ss_pred             CCCCCCCCCEEEEC---C-CCCCCCCCCCCEECHH
Q ss_conf             31178888744214---8-8872277898715323
Q gi|254780459|r    9 KRTCPDTGKRFYDL---N-KQVIVSPYTQNSWPLA   39 (129)
Q Consensus         9 KR~C~~Cg~KFYDl---n-k~PiiCP~CG~e~~~~   39 (129)
                      +-.|+.||.+|.-.   . .....||.||...-|.
T Consensus       113 ~~~C~~C~~~~~~~~~~~~~~~~~c~~Cgg~lrP~  147 (235)
T 1s5p_A          113 KVRCSQSGQVLDWTGDVTPEDKCHCCQFPAPLRPH  147 (235)
T ss_dssp             EEEETTTCCEEECCSCCCSSCCC-------CEEEE
T ss_pred             EEEECCCCCCCCCHHHHCCCCCCCCCCCCCEECCC
T ss_conf             34678999816723332025788754557407688


No 85 
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=70.28  E-value=1.2  Score=23.48  Aligned_cols=26  Identities=19%  Similarity=0.282  Sum_probs=15.1

Q ss_pred             CCCCCCCCCEEEE-------CCCCCCCCCCCCC
Q ss_conf             3117888874421-------4888722778987
Q gi|254780459|r    9 KRTCPDTGKRFYD-------LNKQVIVSPYTQN   34 (129)
Q Consensus         9 KR~C~~Cg~KFYD-------lnk~PiiCP~CG~   34 (129)
                      .-+|.+|+.+|.-       .+.....||.|+.
T Consensus       161 ~~~C~~C~~~~~~~~~~~~~~~~~vP~Cp~C~~  193 (354)
T 2hjh_A          161 TATCVTCHWNLPGERIFNKIRNLELPLCPYCYK  193 (354)
T ss_dssp             EEEETTTCCEEEGGGGHHHHHTTCCCBCTTTHH
T ss_pred             EEEECCCCCCCCHHHHHHHHHCCCCCCCCCHHH
T ss_conf             788568898387899999885168998940111


No 86 
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=70.24  E-value=2.1  Score=22.07  Aligned_cols=31  Identities=16%  Similarity=0.179  Sum_probs=22.4

Q ss_pred             CCCCCCCCCEEEEC----CCC-CCCCCCCCCEECHH
Q ss_conf             31178888744214----888-72277898715323
Q gi|254780459|r    9 KRTCPDTGKRFYDL----NKQ-VIVSPYTQNSWPLA   39 (129)
Q Consensus         9 KR~C~~Cg~KFYDl----nk~-PiiCP~CG~e~~~~   39 (129)
                      =|-||.||.-.|=.    ++. -..|+.||.++...
T Consensus         4 m~FCp~C~nlL~~~~~~~~~~l~~~C~~C~y~~~~~   39 (122)
T 1twf_I            4 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAG   39 (122)
T ss_dssp             CCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEECS
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC
T ss_conf             687744373777255788877589889998851257


No 87 
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens}
Probab=70.19  E-value=2.2  Score=21.94  Aligned_cols=34  Identities=15%  Similarity=0.134  Sum_probs=21.4

Q ss_pred             CCCHHHCCC----CCCCCCCCEEEECCCCCCCCCCCCCEECHH
Q ss_conf             975222783----117888874421488872277898715323
Q gi|254780459|r    1 MAKPELGTK----RTCPDTGKRFYDLNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus         1 MaK~elG~K----R~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~   39 (129)
                      ||-|+-=..    -.|+=|.-.|    ++|++.| ||+.|=-.
T Consensus         3 ~~~p~~~~~~~ed~~C~IC~~~~----~~pv~l~-CgH~fC~~   40 (115)
T 3l11_A            3 MALPKDAIPSLSECQCGICMEIL----VEPVTLP-CNHTLCKP   40 (115)
T ss_dssp             CCCCTTCCCCHHHHBCTTTCSBC----SSCEECT-TSCEECHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCC----CCCEECC-CCCCHHHH
T ss_conf             88985558998889997888302----8807827-99843499


No 88 
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=70.01  E-value=1.6  Score=22.76  Aligned_cols=21  Identities=10%  Similarity=0.203  Sum_probs=11.4

Q ss_pred             CCCEEEECCCCCCCCCCCCCEE
Q ss_conf             8874421488872277898715
Q gi|254780459|r   15 TGKRFYDLNKQVIVSPYTQNSW   36 (129)
Q Consensus        15 Cg~KFYDlnk~PiiCP~CG~e~   36 (129)
                      || ||+-.+...++|..||.++
T Consensus        72 c~-~~~~~~~~~~~C~tCg~~~   92 (1407)
T 3lu0_D           72 CG-KYKRLKHRGVICEKCGVEV   92 (1407)
T ss_dssp             SC-SCCSTTCSSSCCSSSCCCC
T ss_pred             CC-CCCCCCCCCCCCCCCCCCC
T ss_conf             66-5333255986999999804


No 89 
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=69.57  E-value=2.5  Score=21.63  Aligned_cols=31  Identities=13%  Similarity=0.149  Sum_probs=24.0

Q ss_pred             CCCCCCCCCCCEEEECCCCCCCCCCCCCEECH
Q ss_conf             78311788887442148887227789871532
Q gi|254780459|r    7 GTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPL   38 (129)
Q Consensus         7 G~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~   38 (129)
                      |..-.|..|+++|==| +.--.|..||..|=-
T Consensus         7 ~~~s~C~~C~~~Fs~~-~rrhhCr~CG~v~C~   37 (88)
T 1wfk_A            7 GMESRCYGCAVKFTLF-KKEYGCKNCGRAFCN   37 (88)
T ss_dssp             CCCSBCTTTCCBCCSS-SCEEECSSSCCEEET
T ss_pred             CCCCCCCCCCCCCCCC-CCCCCCCCCCCEECC
T ss_conf             3468193649813374-436546557896391


No 90 
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=69.32  E-value=1.1  Score=23.88  Aligned_cols=27  Identities=19%  Similarity=0.351  Sum_probs=13.9

Q ss_pred             CCCCCCCEEEECC---------CCCCCCCCCCCEEC
Q ss_conf             1788887442148---------88722778987153
Q gi|254780459|r   11 TCPDTGKRFYDLN---------KQVIVSPYTQNSWP   37 (129)
Q Consensus        11 ~C~~Cg~KFYDln---------k~PiiCP~CG~e~~   37 (129)
                      .|..|+.+|..+.         ..|..|+.||..|.
T Consensus        18 ~C~~C~~~F~~~~~l~~H~~~h~~~~~C~~C~~~F~   53 (107)
T 1wjp_A           18 QCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFF   53 (107)
T ss_dssp             BCTTTCCBCSSHHHHHHHHHHHHHSBCCTTTCCCBS
T ss_pred             CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEC
T ss_conf             594989956788999978317698969899988437


No 91 
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=69.14  E-value=2.7  Score=21.39  Aligned_cols=35  Identities=6%  Similarity=-0.013  Sum_probs=26.7

Q ss_pred             CCCCCCCCCCEEEEC-----------CCCCCCCCCCCCEECHHHHH
Q ss_conf             831178888744214-----------88872277898715323310
Q gi|254780459|r    8 TKRTCPDTGKRFYDL-----------NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDl-----------nk~PiiCP~CG~e~~~~~~~   42 (129)
                      .--.|+.|+.+|...           +..|-.|+.||..|.-...+
T Consensus         8 kPy~C~~C~~~f~~~~~L~~H~~~H~~~kpy~C~~C~~~f~~~~~L   53 (70)
T 1x5w_A            8 HPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNL   53 (70)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHH
T ss_pred             CCEECCCCCCEECCHHHHHHHHHHHCCCCCEECCCCCCEECCHHHH
T ss_conf             5901899988619899999999985799782789778874888899


No 92 
>2waq_B DNA-directed RNA polymerase RPO2 subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_B 2pmz_B 3hkz_B
Probab=69.07  E-value=2.2  Score=21.93  Aligned_cols=26  Identities=31%  Similarity=0.560  Sum_probs=17.8

Q ss_pred             CCCCCCCC-EEEECCCCCCCCCCCCCE
Q ss_conf             11788887-442148887227789871
Q gi|254780459|r   10 RTCPDTGK-RFYDLNKQVIVSPYTQNS   35 (129)
Q Consensus        10 R~C~~Cg~-KFYDlnk~PiiCP~CG~e   35 (129)
                      ++|..||. ++|+.++.-..|+.||..
T Consensus      1062 ~vc~~cG~~~~~~~~~~~~~c~~c~~~ 1088 (1131)
T 2waq_B         1062 YVCDQCGYIGWYDKNKNKYVCPIHGDK 1088 (1131)
T ss_dssp             EECSSSCCCCCCCSSSSCCCCTTCSSS
T ss_pred             EECCCCCCEEEEECCCCCEECCCCCCC
T ss_conf             304677865888535783457736886


No 93 
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=68.37  E-value=1.6  Score=22.77  Aligned_cols=34  Identities=21%  Similarity=0.396  Sum_probs=25.6

Q ss_pred             CCCCCCCCCCCEEEECCCCCCCCCCCCCEECHHHHHCC
Q ss_conf             78311788887442148887227789871532331012
Q gi|254780459|r    7 GTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEAP   44 (129)
Q Consensus         7 G~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~~   44 (129)
                      |.--+||=|+.-|    ++|++.|.||..|.-.-+.+-
T Consensus         1 ~s~l~C~Ic~~~~----~~Pv~~~~cGh~fc~~cI~~~   34 (61)
T 2bay_A            1 GSHMLCAISGKVP----RRPVLSPKSRTIFEKSLLEQY   34 (61)
T ss_dssp             ---CCCTTTCSCC----SSEEEETTTTEEEEHHHHHHH
T ss_pred             CCEEECCCCCCCC----CCCEECCCCCCEECHHHHHHH
T ss_conf             9842846989923----388696889876029899999


No 94 
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=67.93  E-value=2.5  Score=21.60  Aligned_cols=31  Identities=13%  Similarity=0.286  Sum_probs=23.4

Q ss_pred             CCCCCCCCEEEEC-------------CCCCCCCCCCCCEECHHH
Q ss_conf             1178888744214-------------888722778987153233
Q gi|254780459|r   10 RTCPDTGKRFYDL-------------NKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus        10 R~C~~Cg~KFYDl-------------nk~PiiCP~CG~e~~~~~   40 (129)
                      -.|+-||..|...             +..|-.||.||..|.-..
T Consensus        11 y~C~~C~k~f~~~~~L~~H~~~~~~~~~k~~~C~~C~k~F~~~~   54 (66)
T 2drp_A           11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKD   54 (66)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHH
T ss_pred             EECCCCCCCCCCHHHHHCCCCEECCCCCCCEECCCCCCEECCHH
T ss_conf             48999998708766722347630268775808989899808988


No 95 
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=67.88  E-value=1.9  Score=22.25  Aligned_cols=29  Identities=17%  Similarity=0.424  Sum_probs=22.9

Q ss_pred             CCCCCC--CCCEEEECCCCCCCCCCCCCEEC
Q ss_conf             311788--88744214888722778987153
Q gi|254780459|r    9 KRTCPD--TGKRFYDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus         9 KR~C~~--Cg~KFYDlnk~PiiCP~CG~e~~   37 (129)
                      =..||+  |++|-.+.+-.--.||+||..++
T Consensus        43 Y~aCp~~~C~kKv~~~~~~~~~C~~C~~~~~   73 (181)
T 1l1o_C           43 YQACPTQDCNKKVIDQQNGLYRCEKCDTEFP   73 (181)
T ss_dssp             EEBCCSTTCCCBCEEETTTEEEETTTTEEES
T ss_pred             ECCCCCHHCCCCCCCCCCCEEECCCCCCCCC
T ss_conf             8258904359835558998288887898277


No 96 
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=67.01  E-value=2.1  Score=22.00  Aligned_cols=14  Identities=0%  Similarity=-0.071  Sum_probs=7.2

Q ss_pred             CCCCCCCCCCEECH
Q ss_conf             87227789871532
Q gi|254780459|r   25 QVIVSPYTQNSWPL   38 (129)
Q Consensus        25 ~PiiCP~CG~e~~~   38 (129)
                      .|-.|+.||..|.-
T Consensus        11 Kpy~C~~C~k~F~~   24 (46)
T 2yto_A           11 KPYKCSDCGKAFTR   24 (46)
T ss_dssp             CCEECSSSCCEESS
T ss_pred             CCEECCCCCCEECC
T ss_conf             89588999897087


No 97 
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.00  E-value=2.6  Score=21.48  Aligned_cols=33  Identities=6%  Similarity=0.026  Sum_probs=24.4

Q ss_pred             HHCCCCCCCCCCCEEEECCCCCCCCCCCCCEECHHHHH
Q ss_conf             22783117888874421488872277898715323310
Q gi|254780459|r    5 ELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus         5 elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~   42 (129)
                      .+.....||-|...|    +.|++.| ||+.|-..=+.
T Consensus        11 ~~~~~~~C~IC~~~~----~~pv~~~-CgH~fC~~Ci~   43 (66)
T 2ecy_A           11 TVEDKYKCEKCHLVL----CSPKQTE-CGHRFCESCMA   43 (66)
T ss_dssp             SCCCCEECTTTCCEE----SSCCCCS-SSCCCCHHHHH
T ss_pred             CCCCCCCCCCCCCCC----CCCEECC-CCCCCCHHHHH
T ss_conf             788879996849230----0847889-99851099999


No 98 
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=66.33  E-value=2.1  Score=22.07  Aligned_cols=13  Identities=8%  Similarity=-0.066  Sum_probs=6.7

Q ss_pred             CCCCCCCCCCEEC
Q ss_conf             8722778987153
Q gi|254780459|r   25 QVIVSPYTQNSWP   37 (129)
Q Consensus        25 ~PiiCP~CG~e~~   37 (129)
                      .|-.|..||..|.
T Consensus        11 Kpy~C~~CgK~F~   23 (46)
T 2ep1_A           11 KPYECSDCGKSFI   23 (46)
T ss_dssp             CSSCCSSSCCCCS
T ss_pred             CCEECCCCCCCCC
T ss_conf             8968999999628


No 99 
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=66.22  E-value=3.2  Score=20.91  Aligned_cols=32  Identities=16%  Similarity=0.184  Sum_probs=23.1

Q ss_pred             HCCCCCCCCCCCEEEE------------CCCCCCCCCCCCCEEC
Q ss_conf             2783117888874421------------4888722778987153
Q gi|254780459|r    6 LGTKRTCPDTGKRFYD------------LNKQVIVSPYTQNSWP   37 (129)
Q Consensus         6 lG~KR~C~~Cg~KFYD------------lnk~PiiCP~CG~e~~   37 (129)
                      ....-.|+.||+.|.-            .+..|-.|+.|+.-|.
T Consensus         9 ~ekpy~C~~Cgk~F~~~~~L~~H~~~~H~~~kpy~C~~C~k~fs   52 (54)
T 2eps_A            9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS   52 (54)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred             CCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCEECCCCCCCCC
T ss_conf             98786688989986874462574653438987847878387618


No 100
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=66.10  E-value=3.3  Score=20.88  Aligned_cols=39  Identities=21%  Similarity=0.321  Sum_probs=26.4

Q ss_pred             CCC--CCCCCCCEEEECCCCCC-CCCCCCC-EECHHHHHCCCCC
Q ss_conf             831--17888874421488872-2778987-1532331012344
Q gi|254780459|r    8 TKR--TCPDTGKRFYDLNKQVI-VSPYTQN-SWPLAYFEAPTSP   47 (129)
Q Consensus         8 ~KR--~C~~Cg~KFYDlnk~Pi-iCP~CG~-e~~~~~~~~~~~~   47 (129)
                      .||  .|+ ||.|-+=|+|-|. .|++||. .|.-..+.+-+++
T Consensus        45 ~KRFFkC~-C~~Rt~sl~r~P~~~C~~Cg~~~weR~~M~~Ek~g   87 (92)
T 2kwq_A           45 VKRFFKCP-CGNRTISLDRLPKKHCSTCGLFKWERVGMLKEKTG   87 (92)
T ss_dssp             ECEEEECT-TSCEEEESSSSCCSCCTTTCSCCCEEECCCSSSCC
T ss_pred             EEEEEECC-CCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCC
T ss_conf             44369989-99917872026886577678681566024021347


No 101
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=66.08  E-value=2.9  Score=21.16  Aligned_cols=27  Identities=22%  Similarity=0.568  Sum_probs=16.1

Q ss_pred             CCCCCCCEE----EE--CC-CCCCCCCCCCCEEC
Q ss_conf             178888744----21--48-88722778987153
Q gi|254780459|r   11 TCPDTGKRF----YD--LN-KQVIVSPYTQNSWP   37 (129)
Q Consensus        11 ~C~~Cg~KF----YD--ln-k~PiiCP~CG~e~~   37 (129)
                      +|..||-.|    ..  |. +.--.||.|.+.|+
T Consensus       195 ~~~~C~H~Fh~~Ci~~wl~~~~~~~CP~Cr~~~~  228 (238)
T 3nw0_A          195 SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP  228 (238)
T ss_dssp             ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             8699998116999999994678985969998788


No 102
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=65.84  E-value=1.7  Score=22.61  Aligned_cols=29  Identities=17%  Similarity=0.579  Sum_probs=22.0

Q ss_pred             CCCCCCCCCCCEEEECCCC---CCCCCCCCCEEC
Q ss_conf             7831178888744214888---722778987153
Q gi|254780459|r    7 GTKRTCPDTGKRFYDLNKQ---VIVSPYTQNSWP   37 (129)
Q Consensus         7 G~KR~C~~Cg~KFYDlnk~---PiiCP~CG~e~~   37 (129)
                      -.|++||.||..  -+.|.   --.|-+||..|.
T Consensus        25 ~aky~Cp~Cgk~--~vkR~a~GIW~C~kC~~~~A   56 (83)
T 1vq8_Z           25 NEDHACPNCGED--RVDRQGTGIWQCSYCDYKFT   56 (83)
T ss_dssp             HSCEECSSSCCE--EEEEEETTEEEETTTCCEEE
T ss_pred             HCCCCCCCCCCC--EEEEEEEEEEECCCCCCEEE
T ss_conf             079719899997--67899988978378999885


No 103
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=65.84  E-value=2.6  Score=21.46  Aligned_cols=26  Identities=31%  Similarity=0.409  Sum_probs=15.4

Q ss_pred             CCCCCCCCC-----------------EEEECCCCCCCCCCCCCE
Q ss_conf             311788887-----------------442148887227789871
Q gi|254780459|r    9 KRTCPDTGK-----------------RFYDLNKQVIVSPYTQNS   35 (129)
Q Consensus         9 KR~C~~Cg~-----------------KFYDlnk~PiiCP~CG~e   35 (129)
                      |-.|+.||-                 .|-+|- .-=+||-||+.
T Consensus         3 ky~C~~CgyiYdp~~Gd~~~gi~pGT~F~~LP-~dw~CP~C~a~   45 (54)
T 4rxn_A            3 KYTCTVCGYIYDPEDGDPDDGVNPGTDFKDIP-DDWVCPLCGVG   45 (54)
T ss_dssp             CEEETTTCCEECTTTCBGGGTBCTTCCGGGSC-TTCBCTTTCCB
T ss_pred             CEECCCCCCEECCCCCCCCCCCCCCCCHHHCC-CCCCCCCCCCC
T ss_conf             75939999087755488456879899978889-98889399893


No 104
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=65.78  E-value=2.9  Score=21.17  Aligned_cols=29  Identities=10%  Similarity=0.233  Sum_probs=21.9

Q ss_pred             CCCCCCCCCCEEEECCCCC---CCCCCCCCEECH
Q ss_conf             8311788887442148887---227789871532
Q gi|254780459|r    8 TKRTCPDTGKRFYDLNKQV---IVSPYTQNSWPL   38 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDlnk~P---iiCP~CG~e~~~   38 (129)
                      .|++||.||..  -+.|.-   =.|-+||..|.-
T Consensus        25 ~ky~CpfCgk~--~vkR~a~GIW~C~~C~~~~AG   56 (72)
T 3jyw_9           25 ARYDCSFCGKK--TVKRGAAGIWTCSCCKKTVAG   56 (72)
T ss_dssp             SCBCCSSCCSS--CBSBCSSSCBCCSSSCCCCCC
T ss_pred             CCCCCCCCCCC--EEEEEEEEEEECCCCCCEEEC
T ss_conf             78409999997--778898889873898988856


No 105
>2i13_A AART; DNA binding, zinc finger, DNA binding protein/DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=65.70  E-value=2.9  Score=21.20  Aligned_cols=10  Identities=20%  Similarity=0.258  Sum_probs=3.2

Q ss_pred             CCCCCCCCEE
Q ss_conf             2277898715
Q gi|254780459|r   27 IVSPYTQNSW   36 (129)
Q Consensus        27 iiCP~CG~e~   36 (129)
                      ..|+.||..|
T Consensus       162 ~~C~~C~~~f  171 (190)
T 2i13_A          162 YKCPECGKSF  171 (190)
T ss_dssp             EECTTTCCEE
T ss_pred             EECCCCCCEE
T ss_conf             1899999872


No 106
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=65.57  E-value=3  Score=21.07  Aligned_cols=33  Identities=15%  Similarity=0.311  Sum_probs=25.1

Q ss_pred             CCCC--CCCCEEEE---C--------CCCCCCCCCCCCEECHHHHH
Q ss_conf             1178--88874421---4--------88872277898715323310
Q gi|254780459|r   10 RTCP--DTGKRFYD---L--------NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        10 R~C~--~Cg~KFYD---l--------nk~PiiCP~CG~e~~~~~~~   42 (129)
                      -.|+  .||..|.-   |        +..|-.|+.||..|.-...+
T Consensus        20 y~C~~~~C~k~F~~~~~l~~H~~~H~~~k~~~C~~C~k~F~~~~~L   65 (73)
T 1f2i_G           20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHL   65 (73)
T ss_dssp             EECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHH
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCHHHH
T ss_conf             5399887889329789999999860898382799898873988999


No 107
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=65.44  E-value=1.1  Score=23.89  Aligned_cols=26  Identities=15%  Similarity=0.086  Sum_probs=19.5

Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCEE
Q ss_conf             117888874421488872277898715
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQVIVSPYTQNSW   36 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~   36 (129)
                      -.|+.|+++|= |-+.-=.|..||..|
T Consensus       376 ~~C~~C~~~F~-~~~RrhhCr~CG~vv  401 (434)
T 3mpx_A          376 MMCMNCGCDFS-LTLRRHHCHACGKIV  401 (434)
T ss_dssp             ---------------------------
T ss_pred             CCCCCCCCCCC-CCCCCCCCCCCCCEE
T ss_conf             71889999557-724360578898876


No 108
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=65.43  E-value=3.8  Score=20.44  Aligned_cols=35  Identities=9%  Similarity=-0.044  Sum_probs=26.2

Q ss_pred             CCCCCCCCCCEEEE-----------CCCCCCCCCCCCCEECHHHHH
Q ss_conf             83117888874421-----------488872277898715323310
Q gi|254780459|r    8 TKRTCPDTGKRFYD-----------LNKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus         8 ~KR~C~~Cg~KFYD-----------lnk~PiiCP~CG~e~~~~~~~   42 (129)
                      ....|..|+..|+.           .+..|-.|+.||..|.-...+
T Consensus        65 ~~~~c~~c~~~~~~~~~l~~H~~~H~~~k~~~C~~C~k~F~~~~~L  110 (124)
T 2dlq_A           65 QVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDL  110 (124)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEECCHHHH
T ss_conf             5630133222221131104223121699764889989891989999


No 109
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida}
Probab=65.06  E-value=2.5  Score=21.61  Aligned_cols=30  Identities=20%  Similarity=0.339  Sum_probs=23.4

Q ss_pred             CCCCCCCCEE--EECCCCCCCCCCCCCEECHH
Q ss_conf             1178888744--21488872277898715323
Q gi|254780459|r   10 RTCPDTGKRF--YDLNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus        10 R~C~~Cg~KF--YDlnk~PiiCP~CG~e~~~~   39 (129)
                      -.||..|...  ..+...-|+||+.|..|.+.
T Consensus        42 ~~CpH~~~~l~~g~~~~~~i~Cp~Hg~~F~~~   73 (103)
T 2qpz_A           42 NLCTHGSARMSDGYLEGREIECPLHQGRFDVC   73 (103)
T ss_dssp             SBCSSSSCBGGGSEEETTEEECTTTTCEEETT
T ss_pred             EECCCCCCCCCCCCCCCCEEEECCCCCEEECC
T ss_conf             67899996442343179999818989899899


No 110
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B*
Probab=64.67  E-value=2.4  Score=21.68  Aligned_cols=28  Identities=11%  Similarity=0.106  Sum_probs=16.6

Q ss_pred             CCCCCCEEE---------ECCCC-------C-CCCCCCCCEE-CHH
Q ss_conf             788887442---------14888-------7-2277898715-323
Q gi|254780459|r   12 CPDTGKRFY---------DLNKQ-------V-IVSPYTQNSW-PLA   39 (129)
Q Consensus        12 C~~Cg~KFY---------Dlnk~-------P-iiCP~CG~e~-~~~   39 (129)
                      ||.||...|         .++-.       + -+||.||..+ .+.
T Consensus         5 C~~Cg~~~~~~~~~~~~~~~kG~~~~i~~~~~~~C~~Cge~~~~~~   50 (133)
T 3o9x_A            5 CPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMNKE   50 (133)
T ss_dssp             CTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEECCHH
T ss_pred             CCCCCCCCEECCCCEEEEEECCEEEEECCEEEEECCCCCCCCCCHH
T ss_conf             9689995403012114799778889983512158988878744713


No 111
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=64.46  E-value=2.8  Score=21.26  Aligned_cols=25  Identities=8%  Similarity=0.156  Sum_probs=17.1

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCEECHH
Q ss_conf             17888874421488872277898715323
Q gi|254780459|r   11 TCPDTGKRFYDLNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus        11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~   39 (129)
                      .||=|--.|    +.|++.|.||..|=-.
T Consensus        24 ~C~IC~~~~----~~~~~~~~CgH~fC~~   48 (100)
T 3lrq_A           24 RCFICMEKL----RDARLCPHCSKLCCFS   48 (100)
T ss_dssp             BCTTTCSBC----SSEEECTTTCCEEEHH
T ss_pred             CCCCCCCCC----CCEEEECCCCCCCCHH
T ss_conf             998647448----9845869999887988


No 112
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator, zinc-finger; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=64.45  E-value=3.5  Score=20.71  Aligned_cols=33  Identities=6%  Similarity=0.054  Sum_probs=22.3

Q ss_pred             CCCCCCCCCEEEE-----------CCCCCCCCCCCCCEECHHHH
Q ss_conf             3117888874421-----------48887227789871532331
Q gi|254780459|r    9 KRTCPDTGKRFYD-----------LNKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus         9 KR~C~~Cg~KFYD-----------lnk~PiiCP~CG~e~~~~~~   41 (129)
                      +-.|..||..|+.           -+..|-.|+.||..|.-...
T Consensus        37 ~c~~~~c~~~~~~~~~l~~H~~~h~~~k~~~C~~C~k~F~~~~~   80 (89)
T 2wbs_A           37 HCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDH   80 (89)
T ss_dssp             ECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHH
T ss_pred             CCCCCCCCCCCCCHHHHCCCCCCCCCCCCEECCCCCCCCCCHHH
T ss_conf             36765677522684573040530289868279999998388899


No 113
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=64.38  E-value=2.9  Score=21.23  Aligned_cols=27  Identities=22%  Similarity=0.274  Sum_probs=16.7

Q ss_pred             CCCCCCCCCCEEEECC--------CCC--CCCCCCCCE
Q ss_conf             8311788887442148--------887--227789871
Q gi|254780459|r    8 TKRTCPDTGKRFYDLN--------KQV--IVSPYTQNS   35 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDln--------k~P--iiCP~CG~e   35 (129)
                      .|-+|..||--| |-.        .-|  =+||-||+.
T Consensus         3 ~~y~C~~CgyiY-dp~~GdGt~F~~lp~dw~CP~C~a~   39 (46)
T 6rxn_A            3 QKYVCNVCGYEY-DPAEHDNVPFDQLPDDWCCPVCGVS   39 (46)
T ss_dssp             CCEEETTTCCEE-CGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred             CCEECCCCCEEE-CCCCCCCCCHHHCCCCCCCCCCCCC
T ss_conf             775969999287-7743799887788988768499883


No 114
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3
Probab=63.81  E-value=2.5  Score=21.60  Aligned_cols=23  Identities=9%  Similarity=0.135  Sum_probs=17.5

Q ss_pred             CCCCCCCCCCEEEECCCCCCCCCCCCCE
Q ss_conf             8311788887442148887227789871
Q gi|254780459|r    8 TKRTCPDTGKRFYDLNKQVIVSPYTQNS   35 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~e   35 (129)
                      ..|.|..|+.-+=+     =.||.||.+
T Consensus        10 ~~rAC~~C~~i~~~-----~~CPnCgs~   32 (69)
T 1ryq_A           10 SEKACRHCHYITSE-----DRCPVCGSR   32 (69)
T ss_dssp             -CEEETTTCBEESS-----SSCTTTCCC
T ss_pred             CCHHHHHCCCCCCC-----CCCCCCCCC
T ss_conf             02347519876579-----979798498


No 115
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=63.49  E-value=3.4  Score=20.73  Aligned_cols=26  Identities=23%  Similarity=0.293  Sum_probs=15.1

Q ss_pred             CCCCCCCCCEE-----------------EECCCCCCCCCCCCCE
Q ss_conf             31178888744-----------------2148887227789871
Q gi|254780459|r    9 KRTCPDTGKRF-----------------YDLNKQVIVSPYTQNS   35 (129)
Q Consensus         9 KR~C~~Cg~KF-----------------YDlnk~PiiCP~CG~e   35 (129)
                      |-+|..||-.|                 -+|- .-=+||-||+.
T Consensus         3 ~y~C~~CgyiYdp~~Gd~~~gi~pGT~F~~LP-~dw~CP~C~a~   45 (52)
T 1e8j_A            3 IYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLP-DDWACPVCGAS   45 (52)
T ss_dssp             CEECSSSCCCCCTTTCCTTTTCCSSCCTTSSC-TTCCCSSSCCC
T ss_pred             EEECCCCCEEECCCCCCCCCCCCCCCCHHHCC-CCCCCCCCCCC
T ss_conf             16909999087866588456879999978889-98889499880


No 116
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=63.42  E-value=3.7  Score=20.55  Aligned_cols=28  Identities=21%  Similarity=0.245  Sum_probs=18.4

Q ss_pred             CCCCCCCCCCCEEEECCC-----------------CCCCCCCCCCE
Q ss_conf             783117888874421488-----------------87227789871
Q gi|254780459|r    7 GTKRTCPDTGKRFYDLNK-----------------QVIVSPYTQNS   35 (129)
Q Consensus         7 G~KR~C~~Cg~KFYDlnk-----------------~PiiCP~CG~e   35 (129)
                      ..|-+|+.|| --||-.+                 .--+||-||+.
T Consensus        33 ~~ky~C~~Cg-yiYDp~~Gd~~~gi~pGT~FedLP~dw~CP~Cg~~   77 (87)
T 1s24_A           33 YLKWICITCG-HIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGAT   77 (87)
T ss_dssp             CCEEEETTTT-EEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCC
T ss_pred             CCEEECCCCC-CEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC
T ss_conf             7758899999-18766658845586999987788998868499884


No 117
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=62.87  E-value=2.6  Score=21.50  Aligned_cols=28  Identities=11%  Similarity=0.140  Sum_probs=20.6

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCEECHHHHHC
Q ss_conf             178888744214888722778987153233101
Q gi|254780459|r   11 TCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEA   43 (129)
Q Consensus        11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~   43 (129)
                      +|+-|...|+    .|++.| ||+.|-..-+.+
T Consensus        54 ~C~IC~~~~~----~pv~~~-CgH~fC~~Ci~~   81 (124)
T 3fl2_A           54 QCICCQELVF----RPITTV-CQHNVCKDCLDR   81 (124)
T ss_dssp             BCTTTSSBCS----SEEECT-TSCEEEHHHHHH
T ss_pred             CCCCCCCCCC----CCCCCC-CCCCCCHHHHHH
T ss_conf             9818283201----767678-998442879999


No 118
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=62.59  E-value=1.3  Score=23.23  Aligned_cols=25  Identities=12%  Similarity=0.147  Sum_probs=14.5

Q ss_pred             CCCCCCCEEEEC-CCCCCCCCCCCCE
Q ss_conf             178888744214-8887227789871
Q gi|254780459|r   11 TCPDTGKRFYDL-NKQVIVSPYTQNS   35 (129)
Q Consensus        11 ~C~~Cg~KFYDl-nk~PiiCP~CG~e   35 (129)
                      +|.+||.+.==+ .+.--+||.||..
T Consensus       542 ~C~~Cg~~~~~~~~e~~~~CP~CG~~  567 (605)
T 1h7b_A          542 KCFTCGSTHEMTPTENGFVCSICGET  567 (605)
T ss_dssp             ET------------------------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             57778987860457779839089699


No 119
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.39  E-value=2.8  Score=21.31  Aligned_cols=28  Identities=14%  Similarity=0.137  Sum_probs=23.6

Q ss_pred             CCCCCCCCCEEEECCCCCCCCCCCCCEE
Q ss_conf             3117888874421488872277898715
Q gi|254780459|r    9 KRTCPDTGKRFYDLNKQVIVSPYTQNSW   36 (129)
Q Consensus         9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e~   36 (129)
                      .+.|..|+..|-=|.+....|..||..|
T Consensus        25 ~~~C~~C~~~F~~l~~rk~~C~~Cg~~v   52 (76)
T 2csz_A           25 DRTCARCQESLGRLSPKTNTCRGCNHLV   52 (76)
T ss_dssp             CCBCSSSCCBCSSSCTTTSEETTTTEEC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf             9847120860168577998646899978


No 120
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=62.26  E-value=3.3  Score=20.86  Aligned_cols=15  Identities=0%  Similarity=-0.031  Sum_probs=8.5

Q ss_pred             CCCCCCCCCCCEECH
Q ss_conf             887227789871532
Q gi|254780459|r   24 KQVIVSPYTQNSWPL   38 (129)
Q Consensus        24 k~PiiCP~CG~e~~~   38 (129)
                      ..|-.|..||..|.-
T Consensus        10 EKpy~C~~Cgk~F~~   24 (46)
T 2em2_A           10 EKPFKCKECGKAFRQ   24 (46)
T ss_dssp             CCSEECSSSCCEESS
T ss_pred             CCCEECCCCCCCCCC
T ss_conf             989799998996387


No 121
>2ckl_A Polycomb group ring finger protein 4; BMI1, zinc, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 2h0d_A
Probab=62.25  E-value=2.5  Score=21.62  Aligned_cols=28  Identities=14%  Similarity=0.075  Sum_probs=20.6

Q ss_pred             CCCCCCCCCEEEECCCCCCCCCCCCCEECHHH
Q ss_conf             31178888744214888722778987153233
Q gi|254780459|r    9 KRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus         9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~   40 (129)
                      --+|+=|...|+    +|++.+.||+.|=-.=
T Consensus        15 ~l~C~IC~~~~~----~pv~~~~CgH~FC~~C   42 (108)
T 2ckl_A           15 HLMCVLCGGYFI----DATTIIECLHSFCKTC   42 (108)
T ss_dssp             GTBCTTTSSBCS----SEEEETTTCCEEEHHH
T ss_pred             CCCCCCCCHHHC----CCCEECCCCCCHHHHH
T ss_conf             989867993763----9748158998232999


No 122
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=62.11  E-value=3  Score=21.13  Aligned_cols=23  Identities=22%  Similarity=0.485  Sum_probs=16.8

Q ss_pred             CCCCCCCCC--------------------CEEEECCCCCCCCCCCCC
Q ss_conf             831178888--------------------744214888722778987
Q gi|254780459|r    8 TKRTCPDTG--------------------KRFYDLNKQVIVSPYTQN   34 (129)
Q Consensus         8 ~KR~C~~Cg--------------------~KFYDlnk~PiiCP~CG~   34 (129)
                      .+|.||.|.                    .+||    .|.-||.|..
T Consensus       303 v~~LCp~C~~~~~~~~~~~~~~~~~~~~~~~~~----~~~GC~~C~~  345 (418)
T 1p9r_A          303 VRTLCPDCKEPYEADKEQRKLFDSKKKEPLILY----RATGCPKCNH  345 (418)
T ss_dssp             EEEECTTTCEEEECCHHHHTTC-----CCCEEE----ECCCCSSSCS
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEE----ECCCCCCCCC
T ss_conf             622389876567899999964253455763898----4898642489


No 123
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=61.87  E-value=3.3  Score=20.86  Aligned_cols=13  Identities=0%  Similarity=-0.097  Sum_probs=7.0

Q ss_pred             CCCCCCCCCCEEC
Q ss_conf             8722778987153
Q gi|254780459|r   25 QVIVSPYTQNSWP   37 (129)
Q Consensus        25 ~PiiCP~CG~e~~   37 (129)
                      .|-.|..||..|.
T Consensus        11 Kpy~C~~C~k~F~   23 (46)
T 2em8_A           11 KPYKCVECGKGYK   23 (46)
T ss_dssp             CSEECSSSCCEES
T ss_pred             CCEECCCCCCCCC
T ss_conf             8808998897847


No 124
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=61.53  E-value=3.8  Score=20.47  Aligned_cols=27  Identities=7%  Similarity=-0.139  Sum_probs=21.7

Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCEE
Q ss_conf             117888874421488872277898715
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQVIVSPYTQNSW   36 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~   36 (129)
                      +.|.-|+..|==|.....+|..||..|
T Consensus        69 ~~C~~C~~~f~~l~~~~~~C~~C~~~v   95 (153)
T 2zet_C           69 THCARCLQPYRLLLNSRRQCLECSLFV   95 (153)
T ss_dssp             TBCTTTCCBGGGCSSCCEECTTTCCEE
T ss_pred             CHHHHHCCCCCCCCCCCCCCCCCCHHH
T ss_conf             400454786545457887343476021


No 125
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=61.38  E-value=2.4  Score=21.69  Aligned_cols=20  Identities=10%  Similarity=0.102  Sum_probs=12.9

Q ss_pred             CCCCCCCCCCCCCEECHHHH
Q ss_conf             48887227789871532331
Q gi|254780459|r   22 LNKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        22 lnk~PiiCP~CG~e~~~~~~   41 (129)
                      |+-.---||.||.+|--.++
T Consensus        47 ~~~F~FKCP~CGEEFyG~~L   66 (95)
T 2k5c_A           47 VEEFVFKCPVCGEEFYGKTL   66 (95)
T ss_dssp             HHHSEEECTTTCCEEETTSS
T ss_pred             HHHHHHCCCCCCHHHHCCCC
T ss_conf             98770008866578872468


No 126
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=61.33  E-value=2.4  Score=21.69  Aligned_cols=30  Identities=20%  Similarity=0.164  Sum_probs=22.1

Q ss_pred             CCCCCCCCCCCEEEECCCCC---CCCCCCCCEECH
Q ss_conf             78311788887442148887---227789871532
Q gi|254780459|r    7 GTKRTCPDTGKRFYDLNKQV---IVSPYTQNSWPL   38 (129)
Q Consensus         7 G~KR~C~~Cg~KFYDlnk~P---iiCP~CG~e~~~   38 (129)
                      =.|++||.||..  -+.|.-   =.|-+||..|.-
T Consensus        25 ~~ky~Cp~Cgk~--~vkR~a~GIW~C~~C~~~~aG   57 (73)
T 1ffk_W           25 KKKYKCPVCGFP--KLKRASTSIWVCGHCGYKIAG   57 (73)
T ss_pred             CCCCCCCCCCCC--EEEEEEEEEEECCCCCCEEEC
T ss_conf             177609989997--778899889874799998868


No 127
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=60.91  E-value=3.5  Score=20.69  Aligned_cols=31  Identities=13%  Similarity=0.153  Sum_probs=20.7

Q ss_pred             CCCCCCCCCEEE------EC-CCCCCCCCCCCCEECHH
Q ss_conf             311788887442------14-88872277898715323
Q gi|254780459|r    9 KRTCPDTGKRFY------DL-NKQVIVSPYTQNSWPLA   39 (129)
Q Consensus         9 KR~C~~Cg~KFY------Dl-nk~PiiCP~CG~e~~~~   39 (129)
                      +-.|..|+++|-      .+ ...+..||.||...-|.
T Consensus       121 ~~~C~~C~~~~~~~~~~~~~~~~~~p~c~~Cgg~lrP~  158 (246)
T 1yc5_A          121 EYYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPN  158 (246)
T ss_dssp             EEEETTTCCEEEHHHHHHHTTTCSSCBCTTTCCBEEEE
T ss_pred             EEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             57878989847789987653035578734569815676


No 128
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=60.37  E-value=3.4  Score=20.74  Aligned_cols=12  Identities=0%  Similarity=-0.067  Sum_probs=5.6

Q ss_pred             CCCCCCCCCCEE
Q ss_conf             872277898715
Q gi|254780459|r   25 QVIVSPYTQNSW   36 (129)
Q Consensus        25 ~PiiCP~CG~e~   36 (129)
                      .|-.|..||..|
T Consensus        11 Kpy~C~~Cgk~F   22 (46)
T 2ytq_A           11 KPYGCSECGKAF   22 (46)
T ss_dssp             CSCBCSSSCCBC
T ss_pred             CCEECCCCCCCC
T ss_conf             996899989856


No 129
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas}
Probab=59.82  E-value=3.4  Score=20.74  Aligned_cols=31  Identities=10%  Similarity=0.120  Sum_probs=23.4

Q ss_pred             HCCCCCCCCCCCEEEECCCCC-----CCCCCCCCEE
Q ss_conf             278311788887442148887-----2277898715
Q gi|254780459|r    6 LGTKRTCPDTGKRFYDLNKQV-----IVSPYTQNSW   36 (129)
Q Consensus         6 lG~KR~C~~Cg~KFYDlnk~P-----iiCP~CG~e~   36 (129)
                      +...|+|+.||.-|.-....|     -+|..||...
T Consensus       123 l~~Rr~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~l  158 (223)
T 2xb4_A          123 IMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGAL  158 (223)
T ss_dssp             HHTBCEESSCTTSCCBTTCGGGCCBTTBCTTTCCBE
T ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             861200456787554334687776655554567711


No 130
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=59.80  E-value=2  Score=22.15  Aligned_cols=13  Identities=8%  Similarity=0.089  Sum_probs=6.7

Q ss_pred             CCCCCCCCCCEEC
Q ss_conf             8722778987153
Q gi|254780459|r   25 QVIVSPYTQNSWP   37 (129)
Q Consensus        25 ~PiiCP~CG~e~~   37 (129)
                      .|..|+.||..|.
T Consensus        65 k~~~C~~C~~~f~   77 (119)
T 2jp9_A           65 KPFQCKTCQRKFS   77 (119)
T ss_dssp             CCEECTTTCCEES
T ss_pred             CCCCCCCCCCCCC
T ss_conf             7665755575367


No 131
>3dpt_A ROCO, RAB family protein; alpha-beta-protein, signaling protein; 2.90A {Chlorobaculum tepidum}
Probab=59.61  E-value=2.1  Score=22.01  Aligned_cols=36  Identities=8%  Similarity=0.094  Sum_probs=27.7

Q ss_pred             CCCCCCCCCCEEEEC---------CCCCCCCCCCCCEECHHHHHC
Q ss_conf             831178888744214---------888722778987153233101
Q gi|254780459|r    8 TKRTCPDTGKRFYDL---------NKQVIVSPYTQNSWPLAYFEA   43 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDl---------nk~PiiCP~CG~e~~~~~~~~   43 (129)
                      .+..||.|...||..         ++.-++||+|+..|....++.
T Consensus       276 ~~VpCp~~~~~~~~~~~l~~~~~~g~~~~~c~~~~~~~~v~~Ll~  320 (332)
T 3dpt_A          276 EFIPLPGHPDELVEYKELLGLEKMGRDEYVSGKLEKVFSVSKMLD  320 (332)
T ss_dssp             EEEEETTEEEEEEEHHHHHHHHHTTCCEEEETTTTEEEEHHHHHH
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCEEEHHHHHC
T ss_conf             898898998877489999999978996865798786755899646


No 132
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=59.56  E-value=6  Score=19.27  Aligned_cols=32  Identities=19%  Similarity=0.324  Sum_probs=21.0

Q ss_pred             CCCCCCCCCCEEEECCCCCCCCCCCCCEECHHH
Q ss_conf             831178888744214888722778987153233
Q gi|254780459|r    8 TKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~   40 (129)
                      ...+|...=+.-| -++.-+.||+||+.|.+..
T Consensus       270 ~f~iCa~s~tpIy-~g~~~v~Cp~CgA~y~~~~  301 (325)
T 3mv2_A          270 KFDICAATYKPIY-EDTPSVSDPLTGSKYVITE  301 (325)
T ss_dssp             CEEECTTTCCEEE-SSSCEEECTTTCCEEEGGG
T ss_pred             CCEEECCCCEECC-CCCCCCCCCCCCCEECHHH
T ss_conf             8405047765736-9999714179788625634


No 133
>3ofq_0 50S ribosomal protein L32; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ...
Probab=59.17  E-value=3.9  Score=20.42  Aligned_cols=19  Identities=5%  Similarity=0.043  Sum_probs=13.0

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf             178888744214888722778987
Q gi|254780459|r   11 TCPDTGKRFYDLNKQVIVSPYTQN   34 (129)
Q Consensus        11 ~C~~Cg~KFYDlnk~PiiCP~CG~   34 (129)
                      .||+||.    +.+.=-+|| ||.
T Consensus        29 ~C~~CG~----~~~pH~vC~-cG~   47 (56)
T 3ofq_0           29 VDKTSGE----KHLRHHITA-DGY   47 (56)
T ss_dssp             CCSSSCC----CBCSSSCCT-TSB
T ss_pred             CCCCCCC----CCCCCEECC-CCC
T ss_conf             6889998----605857889-988


No 134
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=59.12  E-value=4.4  Score=20.07  Aligned_cols=27  Identities=11%  Similarity=0.321  Sum_probs=15.9

Q ss_pred             CCCCCCCEEEE-----------CCCCCCCCCCCCCEEC
Q ss_conf             17888874421-----------4888722778987153
Q gi|254780459|r   11 TCPDTGKRFYD-----------LNKQVIVSPYTQNSWP   37 (129)
Q Consensus        11 ~C~~Cg~KFYD-----------lnk~PiiCP~CG~e~~   37 (129)
                      .|+.||..|..           .+..|..|+.||..|.
T Consensus        19 ~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~   56 (106)
T 2ee8_A           19 ICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFR   56 (106)
T ss_dssp             BCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCC
T ss_conf             99999887098999999998738998821342244435


No 135
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.85  E-value=4.1  Score=20.24  Aligned_cols=13  Identities=0%  Similarity=0.008  Sum_probs=6.6

Q ss_pred             CCCCCCCCCCEEC
Q ss_conf             8722778987153
Q gi|254780459|r   25 QVIVSPYTQNSWP   37 (129)
Q Consensus        25 ~PiiCP~CG~e~~   37 (129)
                      .|-.|+.||..|.
T Consensus        11 Kpy~C~~C~k~F~   23 (46)
T 2emf_A           11 KHFECTECGKAFT   23 (46)
T ss_dssp             CCEECSSSCCEES
T ss_pred             CCCCCCCCCCCCC
T ss_conf             7818989999666


No 136
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.73  E-value=3.8  Score=20.49  Aligned_cols=11  Identities=9%  Similarity=-0.040  Sum_probs=5.2

Q ss_pred             CCCCCCCCCEE
Q ss_conf             72277898715
Q gi|254780459|r   26 VIVSPYTQNSW   36 (129)
Q Consensus        26 PiiCP~CG~e~   36 (129)
                      |-.|..||..|
T Consensus        12 py~C~~C~k~F   22 (46)
T 2eov_A           12 PYKCSDCGKSF   22 (46)
T ss_dssp             SCBCSSSCCBC
T ss_pred             CEECCCCCCEE
T ss_conf             94899879881


No 137
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.50  E-value=3.5  Score=20.72  Aligned_cols=12  Identities=8%  Similarity=0.080  Sum_probs=5.7

Q ss_pred             CCCCCCCCCCEE
Q ss_conf             872277898715
Q gi|254780459|r   25 QVIVSPYTQNSW   36 (129)
Q Consensus        25 ~PiiCP~CG~e~   36 (129)
                      .|-.|..||..|
T Consensus        11 Kpy~C~~C~k~F   22 (46)
T 2eoq_A           11 KPFKCDICGKSF   22 (46)
T ss_dssp             CSCCCSSSCCCC
T ss_pred             CCCCCCCCCCCC
T ss_conf             885789898987


No 138
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=58.44  E-value=3.7  Score=20.56  Aligned_cols=26  Identities=4%  Similarity=0.055  Sum_probs=18.5

Q ss_pred             CCCCCCCCCCEEEECCCCCCCCCCCCCEECH
Q ss_conf             8311788887442148887227789871532
Q gi|254780459|r    8 TKRTCPDTGKRFYDLNKQVIVSPYTQNSWPL   38 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~   38 (129)
                      ..-+||=|.--|+    +|+++| ||..|=-
T Consensus        22 ~~l~CpIC~~~~~----~Pv~~~-CgH~FC~   47 (116)
T 1rmd_A           22 KSISCQICEHILA----DPVETS-CKHLFCR   47 (116)
T ss_dssp             HHTBCTTTCSBCS----SEEECT-TSCEEEH
T ss_pred             CCCCCCCCCCHHC----CCEECC-CCCCHHH
T ss_conf             5878508392424----958658-9981319


No 139
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans}
Probab=58.23  E-value=5.4  Score=19.56  Aligned_cols=32  Identities=9%  Similarity=0.243  Sum_probs=23.5

Q ss_pred             CCCCCCCCCEE----EECCCCCCCCCCCCCEECHHH
Q ss_conf             31178888744----214888722778987153233
Q gi|254780459|r    9 KRTCPDTGKRF----YDLNKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus         9 KR~C~~Cg~KF----YDlnk~PiiCP~CG~e~~~~~   40 (129)
                      -..||-.|...    ++....-|+||..|..|++..
T Consensus        48 ~~~CpH~g~~L~~g~~~~~~~~i~CP~H~~~Fdl~t   83 (121)
T 3gce_A           48 SNLCSHAEAYLDMGVFHAESLEIECPLHVGRFDVRT   83 (121)
T ss_dssp             ESBCSSSSCBGGGSEEETTTTEEECTTTCCEEETTT
T ss_pred             ECCCCCCCCCCCCCCEECCCCEEEECCCCCEEECCC
T ss_conf             773998997841574864899999689998999999


No 140
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=58.21  E-value=3.6  Score=20.62  Aligned_cols=30  Identities=7%  Similarity=-0.012  Sum_probs=22.5

Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCEECHHHHHCC
Q ss_conf             11788887442148887227789871532331012
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEAP   44 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~~   44 (129)
                      -+||=|..-|+|    |++.| ||+.|.-..+.+-
T Consensus       107 ~~C~i~~~~m~d----Pv~~~-~ghty~~~~i~~~  136 (179)
T 2f42_A          107 LCGKISFELMRE----PCITP-SGITYDRKDIEEH  136 (179)
T ss_dssp             GBCTTTCSBCSS----EEECT-TSCEEEHHHHHHH
T ss_pred             HCCCCCCCCCCC----CEECC-CCCEECHHHHHHH
T ss_conf             177465864768----41469-9797669999999


No 141
>1s1i_9 L37A, YL35, 60S ribosomal protein L43; 80S ribosome, 60S ribosomal subunit, EEF2, tRNA translocation, sordarin, cryo-EM; 11.70A {Saccharomyces cerevisiae} SCOP: i.1.1.1
Probab=57.90  E-value=3.2  Score=20.89  Aligned_cols=30  Identities=10%  Similarity=0.243  Sum_probs=22.3

Q ss_pred             CCCCCCCCCCCEEEECCCC---CCCCCCCCCEECH
Q ss_conf             7831178888744214888---7227789871532
Q gi|254780459|r    7 GTKRTCPDTGKRFYDLNKQ---VIVSPYTQNSWPL   38 (129)
Q Consensus         7 G~KR~C~~Cg~KFYDlnk~---PiiCP~CG~e~~~   38 (129)
                      -.|.+||.||..  -+.|.   --.|-+||..|.-
T Consensus        33 ~aky~Cp~Cgk~--~vkR~a~GIW~C~kC~~~~AG   65 (91)
T 1s1i_9           33 HARYDCSFCGKK--TVKRGAAGIWTCSCCKKTVAG   65 (91)
T ss_dssp             SSCCCCTTTCSS--CCCEETTTEECCSSSCCCEEC
T ss_pred             CCCCCCCCCCCC--EEEEEEEEEEECCCCCCEEEC
T ss_conf             688239899997--348998888687999988867


No 142
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=57.69  E-value=4.6  Score=19.95  Aligned_cols=30  Identities=17%  Similarity=0.185  Sum_probs=22.0

Q ss_pred             CCCCCCCCCEEEECCCCCCCCCCCCCEECHHHHH
Q ss_conf             3117888874421488872277898715323310
Q gi|254780459|r    9 KRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus         9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~   42 (129)
                      .-+|+-|--.|    +.|+++|.||+.|-..=+.
T Consensus        15 ~~~C~IC~~~~----~~p~~~~~CgH~fc~~Ci~   44 (74)
T 2yur_A           15 ELLCLICKDIM----TDAVVIPCCGNSYCDECIR   44 (74)
T ss_dssp             GGSCSSSCCCC----TTCEECSSSCCEECTTHHH
T ss_pred             CCCCCCCCHHH----HCCEEECCCCCEECHHHHH
T ss_conf             89996649175----0971848898999999999


No 143
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain elongation factor, alternative splicing, cytoplasm; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=57.48  E-value=2.9  Score=21.21  Aligned_cols=30  Identities=10%  Similarity=-0.044  Sum_probs=22.9

Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCEECHHHHHCC
Q ss_conf             11788887442148887227789871532331012
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEAP   44 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~~   44 (129)
                      -+||=|+.-|.|    |++.| ||..|.-..+.+-
T Consensus        30 ~~CpI~~~lm~d----PV~~~-~Ghtf~r~~I~~~   59 (100)
T 2kre_A           30 FRDPLMDTLMTD----PVRLP-SGTIMDRSIILRH   59 (100)
T ss_dssp             TBCTTTCSBCSS----EEEET-TTEEEEHHHHHHH
T ss_pred             CCCCCCCCHHCC----CEECC-CCCEEEHHHHHHH
T ss_conf             597384884038----66768-9977757788888


No 144
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=57.47  E-value=4.6  Score=19.95  Aligned_cols=26  Identities=19%  Similarity=0.446  Sum_probs=18.4

Q ss_pred             HCCCCCCCCCCCEEEECCCCCCCCCCCCCEE
Q ss_conf             2783117888874421488872277898715
Q gi|254780459|r    6 LGTKRTCPDTGKRFYDLNKQVIVSPYTQNSW   36 (129)
Q Consensus         6 lG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~   36 (129)
                      +-.+-.||-|..-|    +.|++|| ||..|
T Consensus        15 ~~~~~~C~IC~~~~----~~Pv~~~-CgH~f   40 (170)
T 3hcs_A           15 LESKYECPICLMAL----REAVQTP-CGHRF   40 (170)
T ss_dssp             CCGGGBCTTTCSBC----SSEEECT-TSCEE
T ss_pred             CCCCCCCCCCCCHH----CCCEECC-CCCCC
T ss_conf             99888997988431----1927878-99811


No 145
>2ckl_B Ubiquitin ligase protein RING2; BMI1, zinc, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 2h0d_B
Probab=57.04  E-value=4.1  Score=20.29  Aligned_cols=27  Identities=11%  Similarity=0.170  Sum_probs=18.6

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCEECHHHH
Q ss_conf             1788887442148887227789871532331
Q gi|254780459|r   11 TCPDTGKRFYDLNKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~   41 (129)
                      +||=|-.-|    +.|++.|.||+.|=..=+
T Consensus        56 ~C~IC~~~~----~~p~~~~~CgH~FC~~Ci   82 (165)
T 2ckl_B           56 MCPICLDML----KNTMTTKECLHRFCADCI   82 (165)
T ss_dssp             BCTTTSSBC----SSEEEETTTCCEEEHHHH
T ss_pred             CCCCCCHHH----HCCCCCCCCCCEECHHHH
T ss_conf             982688076----486635899997649999


No 146
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibitory protein; transcription regulation, Trp RNA-binding attenuation protein; 2.8A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=56.50  E-value=2.8  Score=21.28  Aligned_cols=24  Identities=13%  Similarity=0.217  Sum_probs=17.6

Q ss_pred             CCCCCCCCCEEEECCCCCCCCCCCCCE
Q ss_conf             311788887442148887227789871
Q gi|254780459|r    9 KRTCPDTGKRFYDLNKQVIVSPYTQNS   35 (129)
Q Consensus         9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e   35 (129)
                      ..+||+|..-=   .+.|--||+|+.-
T Consensus         9 e~tcp~c~~~g---~~e~~pcp~c~~k   32 (53)
T 2bx9_A            9 EVACPKCERAG---EIEGTPCPACSGK   32 (53)
T ss_dssp             EEECTTTTTSS---EETTEECTTTTTS
T ss_pred             CCCCCCCCCCC---CCCCCCCCCCCCC
T ss_conf             00286766757---6379848644575


No 147
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=56.40  E-value=4.2  Score=20.23  Aligned_cols=28  Identities=21%  Similarity=0.281  Sum_probs=20.0

Q ss_pred             CCCCCCCCCEEEECCCCCCCCCCCCCEECHHHH
Q ss_conf             311788887442148887227789871532331
Q gi|254780459|r    9 KRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus         9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~   41 (129)
                      .-+||=|...|    ++|++.| ||+.|--.=+
T Consensus        19 ~l~CpIC~~~~----~~pv~~~-CgH~fC~~Ci   46 (85)
T 2ecw_A           19 EVTCPICLELL----KEPVSAD-CNHSFCRACI   46 (85)
T ss_dssp             TTSCTTTCSCC----SSCEECT-TSCCBCHHHH
T ss_pred             CCCCCCCCCCC----CCEEECC-CCCCHHHHHH
T ss_conf             39984948320----7806888-9973659999


No 148
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=56.08  E-value=3.2  Score=20.96  Aligned_cols=18  Identities=11%  Similarity=0.008  Sum_probs=13.7

Q ss_pred             ECCCCCCCCCCCCCEECH
Q ss_conf             148887227789871532
Q gi|254780459|r   21 DLNKQVIVSPYTQNSWPL   38 (129)
Q Consensus        21 Dlnk~PiiCP~CG~e~~~   38 (129)
                      -+.-.|.+||-||+.+--
T Consensus        19 s~s~qpatcpic~avirq   36 (54)
T 1yui_A           19 SQSEQPATCPICYAVIRQ   36 (54)
T ss_dssp             HTSSCCEECTTTCCEESS
T ss_pred             CCCCCCCCCCHHHHHHHH
T ss_conf             323599777048999998


No 149
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=55.92  E-value=2.8  Score=21.24  Aligned_cols=32  Identities=22%  Similarity=0.301  Sum_probs=19.2

Q ss_pred             CCCC--CCCCEEEE---CC-------CCCCCCCCCCCEECHHHH
Q ss_conf             1178--88874421---48-------887227789871532331
Q gi|254780459|r   10 RTCP--DTGKRFYD---LN-------KQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        10 R~C~--~Cg~KFYD---ln-------k~PiiCP~CG~e~~~~~~   41 (129)
                      -.|+  .||..|..   |.       -.|-.|+.||..|.-...
T Consensus         6 f~C~~~~C~k~F~~~~~L~~H~~~H~~k~~~C~~C~k~F~~~~~   49 (124)
T 1ubd_C            6 IACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSK   49 (124)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHGGGSCCCEECTTTCCEESSHHH
T ss_pred             EECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
T ss_conf             68997888871099999999999808998528979972242201


No 150
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=55.43  E-value=4.4  Score=20.07  Aligned_cols=25  Identities=20%  Similarity=0.349  Sum_probs=15.6

Q ss_pred             CCCCCCCC----------EEEECCCCCCCCCCCCC
Q ss_conf             11788887----------44214888722778987
Q gi|254780459|r   10 RTCPDTGK----------RFYDLNKQVIVSPYTQN   34 (129)
Q Consensus        10 R~C~~Cg~----------KFYDlnk~PiiCP~CG~   34 (129)
                      ..|.+||+          ||||-.|.+-.|++||.
T Consensus        72 ~~C~~Cg~~~a~y~C~~C~l~dd~k~~yHC~~Cgi  106 (143)
T 2dkt_A           72 QTCEDCSTLFGEYYCSICHLFDKDKRQYHCESCGI  106 (143)
T ss_dssp             SBCSSSCCBSCSEECSSSCCEECSSSEEEETTTTE
T ss_pred             CCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf             73878207888873100306457877414898884


No 151
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; MVB, zinc, CHMP, ESCRT, membrane, transport, NZF finger, HIV budding, zinc-finger; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=55.20  E-value=7.2  Score=18.77  Aligned_cols=46  Identities=9%  Similarity=0.065  Sum_probs=31.3

Q ss_pred             CCCHHHCCCCCCCCCCCE-----EEECCC-CCCCCCCCCCEECHHHHHCCCC
Q ss_conf             975222783117888874-----421488-8722778987153233101234
Q gi|254780459|r    1 MAKPELGTKRTCPDTGKR-----FYDLNK-QVIVSPYTQNSWPLAYFEAPTS   46 (129)
Q Consensus         1 MaK~elG~KR~C~~Cg~K-----FYDlnk-~PiiCP~CG~e~~~~~~~~~~~   46 (129)
                      ||.+..=+.-+||-|++-     =++-|- .+.+|-+||...+-+.+..+..
T Consensus         9 ~~~~~~vs~W~CPICM~~Net~~E~~~n~~p~p~C~NCGV~~DyeM~~~SI~   60 (76)
T 2j9u_B            9 MASADVVSTWVCPICMVSNETQGEFTKDTLPTPICINCGVPADYELTKSSIN   60 (76)
T ss_dssp             ------CEEEECTTTCCEEEESSCCCTTCSSCCBCTTTCCBCCHHHHGGGCB
T ss_pred             HCCCCEEEEECCCEEEEECCCEEEECCCCCCCCCCCCCCCCCCHHHHHCCEE
T ss_conf             0134724564364126642100033046899996444687548766306168


No 152
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.00  E-value=1.8  Score=22.45  Aligned_cols=33  Identities=12%  Similarity=0.178  Sum_probs=24.5

Q ss_pred             CCCCCCCCCEEE---ECCC-CCCCCCCCCCEECHHHH
Q ss_conf             311788887442---1488-87227789871532331
Q gi|254780459|r    9 KRTCPDTGKRFY---DLNK-QVIVSPYTQNSWPLAYF   41 (129)
Q Consensus         9 KR~C~~Cg~KFY---Dlnk-~PiiCP~CG~e~~~~~~   41 (129)
                      -..|..||..|.   .|.+ .|-.|..||..|.-...
T Consensus        18 ~~~C~~Cgk~F~~~~~l~~~k~~~C~~C~k~F~~~s~   54 (73)
T 2ctu_A           18 SQKCSKCGIIFIRRSTLSRRKTPMCEKCRKDSCQEAA   54 (73)
T ss_dssp             EEECSSSCCEEECCCCCCCSSSCCCHHHHHTCSCCCS
T ss_pred             CEECCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHH
T ss_conf             8128845525420342134477873508889597678


No 153
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=54.96  E-value=5.3  Score=19.57  Aligned_cols=28  Identities=4%  Similarity=0.082  Sum_probs=18.4

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCEECHHHHH
Q ss_conf             17888874421488872277898715323310
Q gi|254780459|r   11 TCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~   42 (129)
                      .||=|.-.|    +.|++.+.||+.|-..-+.
T Consensus        24 ~C~IC~~~~----~~pv~l~~CgH~fC~~Ci~   51 (117)
T 1jm7_B           24 RCSRCTNIL----REPVCLGGCEHIFCSNCVS   51 (117)
T ss_dssp             SCSSSCSCC----SSCBCCCSSSCCBCTTTGG
T ss_pred             CCCCCCCCC----CCCEEECCCCCCCCHHHHH
T ss_conf             957889421----5973857899954499999


No 154
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=54.90  E-value=3.9  Score=20.42  Aligned_cols=36  Identities=14%  Similarity=-0.129  Sum_probs=25.5

Q ss_pred             CCCCCCCCCCEEEECC---------------CCCCCCCCCCCEECHHHHHC
Q ss_conf             8311788887442148---------------88722778987153233101
Q gi|254780459|r    8 TKRTCPDTGKRFYDLN---------------KQVIVSPYTQNSWPLAYFEA   43 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDln---------------k~PiiCP~CG~e~~~~~~~~   43 (129)
                      ..-.|+-|+.+|...+               ..|..|+.||..|.-...++
T Consensus        17 ~~f~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~y~C~~C~~~f~~~~~L~   67 (102)
T 2ghf_A           17 GGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALS   67 (102)
T ss_dssp             SSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHH
T ss_pred             CCEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCHHHHH
T ss_conf             698999999872866899998677667865767879899998408579973


No 155
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=54.74  E-value=4.6  Score=19.94  Aligned_cols=32  Identities=9%  Similarity=-0.015  Sum_probs=24.4

Q ss_pred             CCCCCCCCCEEEECCCCCCCCCCCCCEECHHHHHCC
Q ss_conf             311788887442148887227789871532331012
Q gi|254780459|r    9 KRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEAP   44 (129)
Q Consensus         9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~~   44 (129)
                      .-+||=|+.-|    ++|++.|.||..|.-..+.+-
T Consensus        22 ~~~CPI~~~lm----~dPV~~~~~~~tyer~~I~~~   53 (98)
T 1wgm_A           22 EFLDPIMSTLM----CDPVVLPSSRVTVDRSTIARH   53 (98)
T ss_dssp             TTBCTTTCSBC----SSEEECTTTCCEEEHHHHHHH
T ss_pred             HHCCCCHHHHH----HHHHHCCCCCCHHHHHHHHHH
T ss_conf             61882715588----546664678606639999999


No 156
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii}
Probab=54.51  E-value=4.5  Score=20.04  Aligned_cols=24  Identities=17%  Similarity=0.192  Sum_probs=17.3

Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCEECH
Q ss_conf             11788887442148887227789871532
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQVIVSPYTQNSWPL   38 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~~   38 (129)
                      |.|..|+.-+=+     =.||.||..+..
T Consensus         2 kAC~~C~~i~~~-----~~Cp~C~s~~t~   25 (59)
T 3lpe_B            2 RACLKCKYLTND-----EICPICHSPTSE   25 (59)
T ss_dssp             EEETTTCBEESS-----SBCTTTCCBEES
T ss_pred             CCCCCCCCCCCC-----CCCCCCCCCCCC
T ss_conf             372319577178-----989694898877


No 157
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=54.24  E-value=2.2  Score=21.98  Aligned_cols=24  Identities=17%  Similarity=0.324  Sum_probs=18.1

Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCEE
Q ss_conf             117888874421488872277898715
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQVIVSPYTQNSW   36 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~   36 (129)
                      ..|-.||-   -|..+---||+||.+-
T Consensus       582 krcrdcgy---qftedrescpkcgsen  605 (1054)
T 1gku_B          582 KRCRDCGY---QFTEDRESCPKCGSEN  605 (1054)
T ss_dssp             C--------------------------
T ss_pred             HHHHHCCC---CCCCCCCCCCCCCCCC
T ss_conf             57875587---2465533486446655


No 158
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=54.12  E-value=5.7  Score=19.41  Aligned_cols=22  Identities=23%  Similarity=0.294  Sum_probs=19.4

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf             178888744214888722778987
Q gi|254780459|r   11 TCPDTGKRFYDLNKQVIVSPYTQN   34 (129)
Q Consensus        11 ~C~~Cg~KFYDlnk~PiiCP~CG~   34 (129)
                      .|..|=+-..|+.|  .-||+||.
T Consensus        17 rC~aCf~~t~d~~k--~FCpkCGn   38 (79)
T 2con_A           17 RCHGCFKTTSDMNR--VFCGHCGN   38 (79)
T ss_dssp             ECSSSCCEESCSSC--CSCSSSCC
T ss_pred             EEEECCCCCCCCCC--CCCCCCCC
T ss_conf             64244669689666--32754798


No 159
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=54.04  E-value=4.3  Score=20.13  Aligned_cols=13  Identities=8%  Similarity=0.076  Sum_probs=6.1

Q ss_pred             CCCCCCCCCCEEC
Q ss_conf             8722778987153
Q gi|254780459|r   25 QVIVSPYTQNSWP   37 (129)
Q Consensus        25 ~PiiCP~CG~e~~   37 (129)
                      .|-.|..||..|.
T Consensus         9 Kpy~C~~Cgk~F~   21 (45)
T 2epq_A            9 KPYSCPVCGLRFK   21 (45)
T ss_dssp             CSSEETTTTEECS
T ss_pred             CCEECCCCCCCCC
T ss_conf             7968998998066


No 160
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=53.70  E-value=8  Score=18.49  Aligned_cols=29  Identities=7%  Similarity=-0.025  Sum_probs=15.7

Q ss_pred             CCCCCCCCEEEEC-----------CCCCCCCCCCCCEECH
Q ss_conf             1178888744214-----------8887227789871532
Q gi|254780459|r   10 RTCPDTGKRFYDL-----------NKQVIVSPYTQNSWPL   38 (129)
Q Consensus        10 R~C~~Cg~KFYDl-----------nk~PiiCP~CG~e~~~   38 (129)
                      ..|..|+..|.-.           +..|-.|+.||..|.-
T Consensus        37 ~~c~~C~~~f~~~~~l~~H~~~H~~~k~y~C~~C~~~f~~   76 (96)
T 2dmd_A           37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRN   76 (96)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESS
T ss_pred             EECCCCCCCCCCCCCHHHHHCEECCCCCCCCCCCCCEECC
T ss_conf             1089788763434441123200068876317878975088


No 161
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=53.38  E-value=5.7  Score=19.40  Aligned_cols=17  Identities=0%  Similarity=-0.140  Sum_probs=10.8

Q ss_pred             CCCCCCCCCCCEECHHH
Q ss_conf             88722778987153233
Q gi|254780459|r   24 KQVIVSPYTQNSWPLAY   40 (129)
Q Consensus        24 k~PiiCP~CG~e~~~~~   40 (129)
                      ..|-.|..||..|.-..
T Consensus        10 EKpy~C~~CgK~F~~~~   26 (46)
T 2ema_A           10 EKRYKCNECGKVFSRNS   26 (46)
T ss_dssp             SCCEECSSSCCEESSHH
T ss_pred             CCCEECCCCCCEECCHH
T ss_conf             98948999898628788


No 162
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=52.98  E-value=7.8  Score=18.56  Aligned_cols=32  Identities=28%  Similarity=0.505  Sum_probs=20.8

Q ss_pred             CCCCCCCCEEE----ECCC--CCCCCCCCCCE----ECHHHHH
Q ss_conf             11788887442----1488--87227789871----5323310
Q gi|254780459|r   10 RTCPDTGKRFY----DLNK--QVIVSPYTQNS----WPLAYFE   42 (129)
Q Consensus        10 R~C~~Cg~KFY----Dlnk--~PiiCP~CG~e----~~~~~~~   42 (129)
                      +-|| ||-+|-    +|..  .-+.||+|.-.    |.++.+.
T Consensus        24 ypCr-CGd~F~It~~dL~~ge~v~~C~sCSL~IrVifd~e~~~   65 (89)
T 2jr7_A           24 YPCP-CGDNFSITKEDLENGEDVATCPSCSLIIKVIYDKDQFV   65 (89)
T ss_dssp             EECT-TSSEEEEEHHHHHHTCCEEECTTTCCEEEEECCHHHHC
T ss_pred             ECCC-CCCEEEECHHHHHCCCEEEECCCCCCEEEEEECHHHCC
T ss_conf             5378-89988987999858994996899962899997577855


No 163
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.45  E-value=7.6  Score=18.63  Aligned_cols=28  Identities=21%  Similarity=0.501  Sum_probs=15.3

Q ss_pred             CCCCCCCCEEEE------CCC-CCCCCCCCCCEEC
Q ss_conf             117888874421------488-8722778987153
Q gi|254780459|r   10 RTCPDTGKRFYD------LNK-QVIVSPYTQNSWP   37 (129)
Q Consensus        10 R~C~~Cg~KFYD------lnk-~PiiCP~CG~e~~   37 (129)
                      ..|+.||-.|--      |++ ....||.|.+.|+
T Consensus        29 ~~~~~C~H~fh~~Ci~~w~~~~~~~~CP~Cr~~~~   63 (74)
T 2ct0_A           29 QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP   63 (74)
T ss_dssp             EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred             CEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             88699998338899999998568973988878271


No 164
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=52.45  E-value=4.8  Score=19.88  Aligned_cols=33  Identities=12%  Similarity=0.003  Sum_probs=21.5

Q ss_pred             CCCCCCCCEEEEC-----------CCCCCCCCCCCCEECHHHHH
Q ss_conf             1178888744214-----------88872277898715323310
Q gi|254780459|r   10 RTCPDTGKRFYDL-----------NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        10 R~C~~Cg~KFYDl-----------nk~PiiCP~CG~e~~~~~~~   42 (129)
                      -.|..||..|...           +..|..|+.||..|.-...+
T Consensus        38 ~~C~~C~~~f~~~~~l~~H~~~H~~~k~~~C~~C~k~f~~~~~L   81 (110)
T 2csh_A           38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF   81 (110)
T ss_dssp             EECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHH
T ss_pred             EECCCCCCCCCCHHHHHCCCCEECCCCCEECCCCCCEECCHHHH
T ss_conf             46885565433201443200101798080898999997988999


No 165
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) sequence RTPA; anti-trap, tryptophan RNA-binding attenuation protein; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=52.14  E-value=5.5  Score=19.51  Aligned_cols=24  Identities=17%  Similarity=0.259  Sum_probs=16.3

Q ss_pred             CCCCCCCCCEEEECCCCCCCCCCCCCE
Q ss_conf             311788887442148887227789871
Q gi|254780459|r    9 KRTCPDTGKRFYDLNKQVIVSPYTQNS   35 (129)
Q Consensus         9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e   35 (129)
                      ..+||+|..-=--   .|--||+|+.-
T Consensus         9 e~tcp~c~~~g~~---e~~pcp~c~~k   32 (53)
T 3lcz_A            9 ETTCPNCNGSGRE---EPEPCPKCLGK   32 (53)
T ss_dssp             EEECTTTTTSCEE---TTEECTTTTTS
T ss_pred             CCCCCCCCCCCCC---CCCCCCCCCCC
T ss_conf             0028676675762---79838634575


No 166
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.11  E-value=6.2  Score=19.19  Aligned_cols=16  Identities=6%  Similarity=0.019  Sum_probs=10.1

Q ss_pred             CCCCCCCCCCCEECHH
Q ss_conf             8872277898715323
Q gi|254780459|r   24 KQVIVSPYTQNSWPLA   39 (129)
Q Consensus        24 k~PiiCP~CG~e~~~~   39 (129)
                      ..|-.|..||..|.-.
T Consensus        10 eKpy~C~~Cgk~F~~~   25 (46)
T 2ep2_A           10 EKPYECSICGKSFTKK   25 (46)
T ss_dssp             CCSEECSSSCCEESSH
T ss_pred             CCCEECCCCCCEECCH
T ss_conf             9696789879970877


No 167
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.88  E-value=7.2  Score=18.77  Aligned_cols=35  Identities=11%  Similarity=0.185  Sum_probs=24.2

Q ss_pred             HHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEECHHHHHC
Q ss_conf             2227831178888744214888722778987153233101
Q gi|254780459|r    4 PELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEA   43 (129)
Q Consensus         4 ~elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~   43 (129)
                      .++.....||-|.-.|    ++|++-| ||+.|=..=+.+
T Consensus        10 ~~l~~~~~C~IC~~~~----~~pv~~~-CgH~fC~~Ci~~   44 (58)
T 2ecj_A           10 ENLQVEASCSVCLEYL----KEPVIIE-CGHNFCKACITR   44 (58)
T ss_dssp             SCSCCCCBCSSSCCBC----SSCCCCS-SCCCCCHHHHHH
T ss_pred             HHCCCCCCCCCCCCCC----CCCEEEC-CCCCHHHHHHHH
T ss_conf             8472279986737402----8938906-997666999999


No 168
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.42  E-value=4.7  Score=19.93  Aligned_cols=16  Identities=0%  Similarity=-0.039  Sum_probs=9.7

Q ss_pred             CCCCCCCCCCCEECHH
Q ss_conf             8872277898715323
Q gi|254780459|r   24 KQVIVSPYTQNSWPLA   39 (129)
Q Consensus        24 k~PiiCP~CG~e~~~~   39 (129)
                      ..|-.|..||..|.-.
T Consensus        10 Ekpy~C~~C~k~F~~~   25 (46)
T 2en1_A           10 EKPFKCEECGKRFTQN   25 (46)
T ss_dssp             CCSEEETTTTEEESSH
T ss_pred             CCCEECCCCCCCCCCH
T ss_conf             7897899989956778


No 169
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.36  E-value=5.5  Score=19.49  Aligned_cols=16  Identities=0%  Similarity=-0.137  Sum_probs=9.9

Q ss_pred             CCCCCCCCCCCEECHH
Q ss_conf             8872277898715323
Q gi|254780459|r   24 KQVIVSPYTQNSWPLA   39 (129)
Q Consensus        24 k~PiiCP~CG~e~~~~   39 (129)
                      -.|-.|..||..|.-.
T Consensus        10 EKpy~C~~Cgk~F~~~   25 (46)
T 2epz_A           10 EKPFDCIDCGKAFSDH   25 (46)
T ss_dssp             CCSBCCTTTCCCBSSH
T ss_pred             CCCEECCCCCCEECCH
T ss_conf             9696899989970878


No 170
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=51.35  E-value=5.4  Score=19.55  Aligned_cols=27  Identities=15%  Similarity=0.360  Sum_probs=18.8

Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCEECH
Q ss_conf             11788887442148887227789871532
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQVIVSPYTQNSWPL   38 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~~   38 (129)
                      =+||.|+..+. +...-++|++| ..|++
T Consensus         3 ~~CP~C~~~L~-~~~~~l~C~~~-h~fd~   29 (269)
T 1p91_A            3 FSCPLCHQPLS-REKNSYICPQR-HQFDM   29 (269)
T ss_dssp             BBCTTTCCBCE-EETTEEECTTC-CEEEB
T ss_pred             EECCCCCCCCC-CCCCEEECCCC-CCCCC
T ss_conf             74889992101-68987983899-52165


No 171
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.20  E-value=6.1  Score=19.19  Aligned_cols=27  Identities=22%  Similarity=0.202  Sum_probs=18.7

Q ss_pred             CCCCCCCCCCEEEECCCCCCCCCCCCCEECHH
Q ss_conf             83117888874421488872277898715323
Q gi|254780459|r    8 TKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~   39 (129)
                      ..-+||-|-..|    ++|++.| ||+.|--.
T Consensus        18 ~~l~CpIC~~~~----~~pv~~~-CgH~fC~~   44 (85)
T 2ecv_A           18 EEVTCPICLELL----TQPLSLD-CGHSFCQA   44 (85)
T ss_dssp             CCCCCTTTCSCC----SSCBCCS-SSCCBCTT
T ss_pred             CCCCCCCCCCHH----CCEEECC-CCCCHHHH
T ss_conf             058993759230----8907868-98746199


No 172
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-binding, ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=50.72  E-value=8.7  Score=18.28  Aligned_cols=25  Identities=16%  Similarity=0.113  Sum_probs=15.6

Q ss_pred             CCCCCCCEEEEC--------CCCCCCCCCCCCE
Q ss_conf             178888744214--------8887227789871
Q gi|254780459|r   11 TCPDTGKRFYDL--------NKQVIVSPYTQNS   35 (129)
Q Consensus        11 ~C~~Cg~KFYDl--------nk~PiiCP~CG~e   35 (129)
                      .|..|+..|.--        -..|-.||+||..
T Consensus       145 ~~~~c~~~~~~~~~~~~~~~~~~p~~C~~c~~~  177 (268)
T 2vl6_A          145 IHPDCMQEFEWPEDEEMPEVLEMPTICPKCGKP  177 (268)
T ss_dssp             ECTTCCCEEESSTTSCCCTTCCCCSBCTTTCCB
T ss_pred             EECCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf             707984289956652036656787647888989


No 173
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=50.64  E-value=8  Score=18.50  Aligned_cols=33  Identities=18%  Similarity=0.363  Sum_probs=18.6

Q ss_pred             CCHHHCCCC----CCCCCCCEEEE---C--------CCCCCCCCCCCC
Q ss_conf             752227831----17888874421---4--------888722778987
Q gi|254780459|r    2 AKPELGTKR----TCPDTGKRFYD---L--------NKQVIVSPYTQN   34 (129)
Q Consensus         2 aK~elG~KR----~C~~Cg~KFYD---l--------nk~PiiCP~CG~   34 (129)
                      +.|.+..||    .||.||..|..   |        ...|..|+.|+-
T Consensus         6 ~~~~~~~~r~~~C~~p~C~k~F~~~~~L~~H~r~H~~~~~~~c~~~~~   53 (100)
T 2ebt_A            6 SGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGC   53 (100)
T ss_dssp             CCCCCCSCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSC
T ss_pred             CCCCCCCCCCEECCCCCCCCEECCHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             899878888978989999898699999999988608998811444456


No 174
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.27  E-value=4.8  Score=19.86  Aligned_cols=15  Identities=33%  Similarity=0.638  Sum_probs=10.6

Q ss_pred             HCCCCCCCCCCCEEE
Q ss_conf             278311788887442
Q gi|254780459|r    6 LGTKRTCPDTGKRFY   20 (129)
Q Consensus         6 lG~KR~C~~Cg~KFY   20 (129)
                      -|+-+.|--||+||-
T Consensus         6 s~k~hlcdlcgkkfk   20 (36)
T 2elr_A            6 SGKTHLCDMCGKKFK   20 (36)
T ss_dssp             CCSSCBCTTTCCBCS
T ss_pred             CCCCCHHHHHHHHHH
T ss_conf             776215876603440


No 175
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=50.08  E-value=6.6  Score=18.99  Aligned_cols=27  Identities=19%  Similarity=0.356  Sum_probs=19.1

Q ss_pred             CCCCCCCCCCEEEECCCCCCCCCCCCCEECHH
Q ss_conf             83117888874421488872277898715323
Q gi|254780459|r    8 TKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~   39 (129)
                      -.-+|+-|..-|    ++|+++| ||..|=..
T Consensus        17 ~~l~C~IC~~~~----~~Pv~~~-CgH~fC~~   43 (118)
T 3hct_A           17 SKYECPICLMAL----REAVQTP-CGHRFCKA   43 (118)
T ss_dssp             GGGBCTTTCSBC----SSEEECT-TSCEEEHH
T ss_pred             CCCCCCCCCCHH----CCCEECC-CCCHHHHH
T ss_conf             988997969451----0949957-99617099


No 176
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=49.92  E-value=5.6  Score=19.44  Aligned_cols=29  Identities=10%  Similarity=0.044  Sum_probs=20.4

Q ss_pred             CCCCCCCCCCEEEECCCCCCCCCCCCCEECHHHH
Q ss_conf             8311788887442148887227789871532331
Q gi|254780459|r    8 TKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~   41 (129)
                      ..-+|+-|...|    ++|++.| ||+.|-..=+
T Consensus         5 ~~l~C~IC~~~~----~~p~~l~-CgH~Fc~~Cl   33 (56)
T 1bor_A            5 QFLRCQQCQAEA----KCPKLLP-CLHTLCSGCL   33 (56)
T ss_dssp             CCSSCSSSCSSC----BCCSCST-TSCCSBTTTC
T ss_pred             CCCCCCCCCCCC----CCCEEEC-CCCHHHHHHH
T ss_conf             688997368506----8988931-8777879988


No 177
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=49.86  E-value=8.8  Score=18.24  Aligned_cols=30  Identities=7%  Similarity=-0.075  Sum_probs=17.3

Q ss_pred             CCCCCCCCEEEECCCC-C-CCCCCCCCEECHH
Q ss_conf             1178888744214888-7-2277898715323
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQ-V-IVSPYTQNSWPLA   39 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~-P-iiCP~CG~e~~~~   39 (129)
                      .+||-|.-+|..=++. + +-|+.||+.|=..
T Consensus        17 ~~C~IC~e~~~~~~~~~~f~~C~~Cgh~~C~~   48 (93)
T 1weo_A           17 QFCEICGDQIGLTVEGDLFVACNECGFPACRP   48 (93)
T ss_dssp             CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHH
T ss_pred             CCCCCCCCCCCCCCCCCEEEECCCCCCHHHHH
T ss_conf             99868644013389999565666467667399


No 178
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=49.13  E-value=7.2  Score=18.78  Aligned_cols=28  Identities=7%  Similarity=-0.049  Sum_probs=20.6

Q ss_pred             CCCCCCCCCEEEECCCCCCCCCCCCCEECHHHH
Q ss_conf             311788887442148887227789871532331
Q gi|254780459|r    9 KRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus         9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~   41 (129)
                      ...|+-|=..|    ++|++.| ||+.|-..=+
T Consensus        78 ~~~C~IC~~~~----~~pv~~~-CgH~fC~~Ci  105 (150)
T 1z6u_A           78 SFMCVCCQELV----YQPVTTE-CFHNVCKDCL  105 (150)
T ss_dssp             HTBCTTTSSBC----SSEEECT-TSCEEEHHHH
T ss_pred             CCCCCCCCCCC----CCCEECC-CCCCCCHHHH
T ss_conf             69995848504----7947889-9982219999


No 179
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=49.12  E-value=7.2  Score=18.77  Aligned_cols=29  Identities=10%  Similarity=0.108  Sum_probs=21.6

Q ss_pred             HCCCCCCCCCCCEEEECCCCCCCCCCCCCEECHH
Q ss_conf             2783117888874421488872277898715323
Q gi|254780459|r    6 LGTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus         6 lG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~   39 (129)
                      +.-|-+|+=|.--|+    +|+++| ||..|=-.
T Consensus        28 ~~e~~~C~IC~~~~~----~Pv~~~-CgH~FC~~   56 (141)
T 3knv_A           28 LEAKYLCSACRNVLR----RPFQAQ-CGHRYCSF   56 (141)
T ss_dssp             CCGGGBCTTTCSBCS----SEEECT-TSCEEEHH
T ss_pred             CCCCCCCCCCCCCCC----CCCCCC-CCCHHHHH
T ss_conf             999889988981116----958878-99656099


No 180
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=48.64  E-value=5.5  Score=19.49  Aligned_cols=27  Identities=11%  Similarity=0.224  Sum_probs=19.5

Q ss_pred             CCCCCCCCEEEE-CCCCCCCC--CCCCCEE
Q ss_conf             117888874421-48887227--7898715
Q gi|254780459|r   10 RTCPDTGKRFYD-LNKQVIVS--PYTQNSW   36 (129)
Q Consensus        10 R~C~~Cg~KFYD-lnk~PiiC--P~CG~e~   36 (129)
                      |.||+|++.+-- -+-.=++|  +.||+.|
T Consensus         7 K~CP~C~~~IeK~~GCnhm~C~~~~C~~~F   36 (60)
T 1wd2_A            7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEF   36 (60)
T ss_dssp             CCCTTTCCCCSSCCSCCSSSCCSSGGGSCC
T ss_pred             CCCCCCCCEEEECCCCCCEEECCCCCCCEE
T ss_conf             599699998886889886597899999809


No 181
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.44  E-value=10  Score=17.81  Aligned_cols=30  Identities=10%  Similarity=0.179  Sum_probs=21.3

Q ss_pred             CCCCCCCCCCEEEECCCCCCCCCCCCCEECHHHHH
Q ss_conf             83117888874421488872277898715323310
Q gi|254780459|r    8 TKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~   42 (129)
                      ..-+||-|--.|    ++|++-| ||+.|=..=+.
T Consensus        19 ~~~~C~IC~~~~----~~pv~~~-CgH~fC~~Ci~   48 (63)
T 2ysj_A           19 EEVICPICLDIL----QKPVTID-CGHNFCLKCIT   48 (63)
T ss_dssp             CCCBCTTTCSBC----SSCEECT-TSSEECHHHHH
T ss_pred             CCCCCCCCCCCC----CCEEEEC-CCCCHHHHHHH
T ss_conf             068987748403----8938807-99843199999


No 182
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=48.22  E-value=6.2  Score=19.16  Aligned_cols=18  Identities=0%  Similarity=0.158  Sum_probs=13.5

Q ss_pred             ECCCCCCCCCCCCCEECH
Q ss_conf             148887227789871532
Q gi|254780459|r   21 DLNKQVIVSPYTQNSWPL   38 (129)
Q Consensus        21 Dlnk~PiiCP~CG~e~~~   38 (129)
                      +--..-++||.|+-.|++
T Consensus        48 d~~~~~Lic~~~~~~YPI   65 (97)
T 2k5r_A           48 QSLHEALITRDRKQVFRI   65 (97)
T ss_dssp             CCCSEEEECTTSCEEEEE
T ss_pred             CHHCCEEECCCCCEEEEC
T ss_conf             410283874655877062


No 183
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=47.84  E-value=5.7  Score=19.40  Aligned_cols=11  Identities=27%  Similarity=0.534  Sum_probs=7.9

Q ss_pred             CCCCCCCCCCE
Q ss_conf             83117888874
Q gi|254780459|r    8 TKRTCPDTGKR   18 (129)
Q Consensus         8 ~KR~C~~Cg~K   18 (129)
                      .|.+||+|++.
T Consensus        13 ~~~~c~~c~~~   23 (155)
T 2ppt_A           13 LRLTCLACGQA   23 (155)
T ss_dssp             EEEECTTTCCE
T ss_pred             EEEECCCCCCC
T ss_conf             07889598755


No 184
>1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D- structure; 3.30A {Thermus aquaticus} SCOP: i.8.1.1 PDB: 1i6v_D* 2gho_D
Probab=47.78  E-value=4.6  Score=19.98  Aligned_cols=23  Identities=22%  Similarity=0.248  Sum_probs=9.6

Q ss_pred             CCCCCCCEEEECCCC-CCCCCCCCCEE
Q ss_conf             178888744214888-72277898715
Q gi|254780459|r   11 TCPDTGKRFYDLNKQ-VIVSPYTQNSW   36 (129)
Q Consensus        11 ~C~~Cg~KFYDlnk~-PiiCP~CG~e~   36 (129)
                      .| +||+  |+-.|. .++|.-||.++
T Consensus        57 ~C-~cg~--~~~~~~~~~~C~tCg~~~   80 (1265)
T 1hqm_D           57 EC-ACGK--YKRQRFEGKVCERCGVEV   80 (1265)
T ss_dssp             ---------------CCSCSSSSSSSS
T ss_pred             EE-CCCC--CCCCCCCCCCCCCCCCCC
T ss_conf             26-6876--000125884779999898


No 185
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.29  E-value=7.9  Score=18.52  Aligned_cols=28  Identities=11%  Similarity=0.059  Sum_probs=15.8

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCEECHH
Q ss_conf             17888874421488872277898715323
Q gi|254780459|r   11 TCPDTGKRFYDLNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus        11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~   39 (129)
                      .||-|...|-+=++.|++. .||+.|=..
T Consensus        17 ~C~IC~~~~~~~~~~p~~l-~CgH~fC~~   44 (88)
T 2ct2_A           17 ECPICMESFTEEQLRPKLL-HCGHTICRQ   44 (88)
T ss_dssp             BCTTTCCBCCTTSSCEEEC-SSSCEEEHH
T ss_pred             CCCCCCCCCCCCCCCCEEC-CCCCEEHHH
T ss_conf             9914691011765454735-899800199


No 186
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.48  E-value=5.5  Score=19.50  Aligned_cols=17  Identities=6%  Similarity=0.047  Sum_probs=11.4

Q ss_pred             CCCCCCCCCEECHHHHH
Q ss_conf             72277898715323310
Q gi|254780459|r   26 VIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        26 PiiCP~CG~e~~~~~~~   42 (129)
                      |-.||+|...|.+...+
T Consensus        12 ~raCPkCn~~Fnl~dpL   28 (49)
T 2e72_A           12 RKICPRCNAQFRVTEAL   28 (49)
T ss_dssp             CCCCTTTCCCCSSHHHH
T ss_pred             CCCCCCCCCEEECCHHH
T ss_conf             75487445424550777


No 187
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious disease, electron transport; NMR {Mycobacterium tuberculosis}
Probab=45.49  E-value=7.6  Score=18.62  Aligned_cols=27  Identities=19%  Similarity=0.158  Sum_probs=17.4

Q ss_pred             CCCCCCCCCCEEEECCC---------------CC--CCCCCCCCE
Q ss_conf             83117888874421488---------------87--227789871
Q gi|254780459|r    8 TKRTCPDTGKRFYDLNK---------------QV--IVSPYTQNS   35 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDlnk---------------~P--iiCP~CG~e   35 (129)
                      +|-+|+.||-- ||=.+               -|  =+||-||+.
T Consensus        26 ~~y~C~~Cgyi-YDp~~GD~~~gippGT~F~dLP~dw~CP~Cga~   69 (81)
T 2kn9_A           26 KLFRCIQCGFE-YDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAA   69 (81)
T ss_dssp             CEEEETTTCCE-EETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCC
T ss_pred             CEEECCCCCEE-ECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC
T ss_conf             75982999938-766658845687988976578988869299983


No 188
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=45.05  E-value=8.1  Score=18.47  Aligned_cols=30  Identities=10%  Similarity=-0.069  Sum_probs=20.4

Q ss_pred             CCCCCCCCCEEEEC--------CCCCCCCCCCCCEECH
Q ss_conf             31178888744214--------8887227789871532
Q gi|254780459|r    9 KRTCPDTGKRFYDL--------NKQVIVSPYTQNSWPL   38 (129)
Q Consensus         9 KR~C~~Cg~KFYDl--------nk~PiiCP~CG~e~~~   38 (129)
                      +-.|..|+.+|.-.        .+.|..||.||...-|
T Consensus       123 ~~~C~~c~~~~~~~~~~~~~~~~~~~~~c~~c~~~lrP  160 (253)
T 1ma3_A          123 KLDCLDCHETYDWSEFVEDFNKGEIPRCRKCGSYYVKP  160 (253)
T ss_dssp             EEEETTTCCEEEGGGTHHHHHTTCCCCCTTTCCSCEEE
T ss_pred             CCEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             34106643344200234544136778865466876998


No 189
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, electron transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=44.90  E-value=8.8  Score=18.23  Aligned_cols=27  Identities=26%  Similarity=0.234  Sum_probs=16.6

Q ss_pred             CCCCCCCCCCEEEECCC---------------CC--CCCCCCCCE
Q ss_conf             83117888874421488---------------87--227789871
Q gi|254780459|r    8 TKRTCPDTGKRFYDLNK---------------QV--IVSPYTQNS   35 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDlnk---------------~P--iiCP~CG~e   35 (129)
                      .|-+|+.||- -||-.+               -|  =+||-||+.
T Consensus         2 ~~y~C~~Cgy-iYd~~~Gd~~~~i~pGT~F~~lP~dw~CP~C~a~   45 (55)
T 2v3b_B            2 RKWQCVVCGF-IYDEALGLPEEGIPAGTRWEDIPADWVCPDCGVG   45 (55)
T ss_dssp             CEEEETTTCC-EEETTTCBTTTTBCTTCCGGGSCTTCCCTTTCCC
T ss_pred             CCEECCCCCE-EECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC
T ss_conf             8769299991-8885558845686989996888898769599983


No 190
>3k35_A Mono-ADP-ribosyltransferase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, structural genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=44.86  E-value=7  Score=18.86  Aligned_cols=30  Identities=3%  Similarity=0.077  Sum_probs=18.4

Q ss_pred             CCCCCCCCEEE------ECC----------CCCCCCCCCCCEECHH
Q ss_conf             11788887442------148----------8872277898715323
Q gi|254780459|r   10 RTCPDTGKRFY------DLN----------KQVIVSPYTQNSWPLA   39 (129)
Q Consensus        10 R~C~~Cg~KFY------Dln----------k~PiiCP~CG~e~~~~   39 (129)
                      -.|.+|+.+|.      .+.          .....||.||...-|.
T Consensus       139 ~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~C~G~lrP~  184 (318)
T 3k35_A          139 EECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGELRDT  184 (318)
T ss_dssp             EEETTTCCEEECSSCCSCCSSCEEEEECCC--------CCCEEEEC
T ss_pred             EEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             9989999863477755665135777656422356764468856897


No 191
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=44.77  E-value=4.4  Score=20.05  Aligned_cols=18  Identities=11%  Similarity=0.185  Sum_probs=10.8

Q ss_pred             CCCCCCCCCC-EECHHHHH
Q ss_conf             8722778987-15323310
Q gi|254780459|r   25 QVIVSPYTQN-SWPLAYFE   42 (129)
Q Consensus        25 ~PiiCP~CG~-e~~~~~~~   42 (129)
                      .-|-||.||. .|++..+.
T Consensus       270 ~~ISCP~CGRt~~dl~~~~  288 (366)
T 3noy_A          270 EIVACPTCGRIEVDLPKVV  288 (366)
T ss_dssp             EEEECCCCTTCCSCHHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHH
T ss_conf             7131799776501199999


No 192
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}
Probab=44.51  E-value=11  Score=17.62  Aligned_cols=34  Identities=15%  Similarity=0.349  Sum_probs=23.2

Q ss_pred             CCCC--CCCCCEEEE---C--------CCCCCCCC--CCCCEECHHHHH
Q ss_conf             3117--888874421---4--------88872277--898715323310
Q gi|254780459|r    9 KRTC--PDTGKRFYD---L--------NKQVIVSP--YTQNSWPLAYFE   42 (129)
Q Consensus         9 KR~C--~~Cg~KFYD---l--------nk~PiiCP--~CG~e~~~~~~~   42 (129)
                      ..+|  +.||+.|.-   |        +..|..||  .||..|.-...+
T Consensus        17 ~~~C~~~~C~k~F~~~~~L~~H~~~h~~~~~~~C~~~~C~k~F~~~~~L   65 (72)
T 2epa_A           17 SHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDEL   65 (72)
T ss_dssp             CEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHH
T ss_pred             CEECCCCCCCCEECCHHHHHHHHHHCCCCCCEECCCCCCCCEECCHHHH
T ss_conf             9689899999876999999878651069978678877789970788999


No 193
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B
Probab=44.39  E-value=4.4  Score=20.10  Aligned_cols=13  Identities=0%  Similarity=-0.151  Sum_probs=7.6

Q ss_pred             CCCCCCCCCEECH
Q ss_conf             7227789871532
Q gi|254780459|r   26 VIVSPYTQNSWPL   38 (129)
Q Consensus        26 PiiCP~CG~e~~~   38 (129)
                      -.+||-||--|.-
T Consensus         8 rf~c~pcgirfss   20 (36)
T 1fv5_A            8 RFMCLPCGIAFSS   20 (36)
T ss_dssp             CCEETTTTEECSC
T ss_pred             CEECCCCCEEECC
T ss_conf             1622775404257


No 194
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=44.36  E-value=8.2  Score=18.42  Aligned_cols=32  Identities=16%  Similarity=0.132  Sum_probs=19.3

Q ss_pred             HHCCCCCCCCCCCEEEECCCCCCCCCCCCCEECHHHH
Q ss_conf             2278311788887442148887227789871532331
Q gi|254780459|r    5 ELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus         5 elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~   41 (129)
                      ++-..-+||-|.-.|    +.|++.| ||+.|=-.=+
T Consensus         8 ~i~~~l~C~IC~~~~----~~pv~~~-CgH~fC~~Ci   39 (79)
T 2egp_A            8 NVQEEVTCPICLELL----TEPLSLD-CGHSLCRACI   39 (79)
T ss_dssp             CCCCCCEETTTTEEC----SSCCCCS-SSCCCCHHHH
T ss_pred             CCCCCCCCCCCCCCC----CCCEECC-CCCCHHHHHH
T ss_conf             675268995779311----6807768-9887889999


No 195
>1x3z_A Peptide:N-glycanase; protein-protein-inhibitor complex, hydrolase; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=43.72  E-value=9.9  Score=17.94  Aligned_cols=46  Identities=13%  Similarity=0.057  Sum_probs=29.4

Q ss_pred             HHCCCCCCCCCCCEE-E---ECCCC-C--------------CCCCCCCCE--E----CHHHHHCCCCCCCC
Q ss_conf             227831178888744-2---14888-7--------------227789871--5----32331012344344
Q gi|254780459|r    5 ELGTKRTCPDTGKRF-Y---DLNKQ-V--------------IVSPYTQNS--W----PLAYFEAPTSPEKE   50 (129)
Q Consensus         5 elG~KR~C~~Cg~KF-Y---Dlnk~-P--------------iiCP~CG~e--~----~~~~~~~~~~~~~~   50 (129)
                      .|=.|-.|+.||.+= |   -++.. |              -.|+.||+.  |    .|..++..|+||-+
T Consensus       115 ~wvn~p~C~~Cg~~t~~~~~~~g~~~pt~~e~~~~a~~vE~y~C~~C~~~~RFPRyn~p~~lL~tr~GrCg  185 (335)
T 1x3z_A          115 KWCNKPDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCNRCGNITRFPRYNDPIKLLETRKGRCG  185 (335)
T ss_dssp             EECSSCCCSSSCSSCCSSEEEEEEECCCSGGGSSSEEEEEEEEETTTCCEEEEEEECCHHHHHHHCEECHH
T ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCHH
T ss_conf             75599999867998623423567789991565378886999989999986046886988999875162178


No 196
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=43.55  E-value=14  Score=17.08  Aligned_cols=31  Identities=16%  Similarity=0.354  Sum_probs=16.7

Q ss_pred             CCCCCCCCCEEEECCCCCCCCCCCCCEECHHH
Q ss_conf             31178888744214888722778987153233
Q gi|254780459|r    9 KRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus         9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~   40 (129)
                      ..+|...=+.-|- +..-+.||+||+.|.+..
T Consensus       262 f~iCa~s~tpIy~-g~~~v~Cp~cgA~y~~~~  292 (320)
T 3mkr_B          262 FDICAASYRPIYR-GKPVEKCPLSGACYSPEF  292 (320)
T ss_dssp             CCBBTTTCCBCCT-TSCCEECTTTCCEECGGG
T ss_pred             CEEECCCCEECCC-CCCCCCCCCCCCEECHHH
T ss_conf             3063167557249-999704589788625744


No 197
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=43.30  E-value=7.6  Score=18.62  Aligned_cols=20  Identities=10%  Similarity=0.044  Sum_probs=14.0

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +-.|-.|+.||..|.-...+
T Consensus         8 gekPy~C~~Cgk~F~~~~~L   27 (37)
T 1p7a_A            8 GIKPFQCPDCDRSFSRSDHL   27 (37)
T ss_dssp             CSSSBCCTTTCCCBSSHHHH
T ss_pred             CCCCEECCCCCCEECCHHHH
T ss_conf             88894789999991778888


No 198
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.10  E-value=8.8  Score=18.23  Aligned_cols=18  Identities=11%  Similarity=0.141  Sum_probs=12.8

Q ss_pred             CCCCCCC-CCCEECHHHHH
Q ss_conf             8722778-98715323310
Q gi|254780459|r   25 QVIVSPY-TQNSWPLAYFE   42 (129)
Q Consensus        25 ~PiiCP~-CG~e~~~~~~~   42 (129)
                      .+|.||. ||+.|....+.
T Consensus        36 ~~i~C~~~Cg~~~~r~~l~   54 (100)
T 2yre_A           36 DLIGCPLVCGAVFHSCKAD   54 (100)
T ss_dssp             CEEECTTCCSCEEEHHHHH
T ss_pred             EECCCCCCCCCCCCHHHHH
T ss_conf             2356888655720276999


No 199
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=42.03  E-value=7.2  Score=18.77  Aligned_cols=16  Identities=6%  Similarity=0.067  Sum_probs=11.5

Q ss_pred             CCCCCCCCCCEECHHH
Q ss_conf             8722778987153233
Q gi|254780459|r   25 QVIVSPYTQNSWPLAY   40 (129)
Q Consensus        25 ~PiiCP~CG~e~~~~~   40 (129)
                      .|-.|+.||..|.-..
T Consensus         1 Kp~~C~~C~k~F~~~~   16 (29)
T 1ard_A            1 RSFVCEVCTRAFARQE   16 (29)
T ss_dssp             CCCBCTTTCCBCSSHH
T ss_pred             CCCCCCCCCCCCCCHH
T ss_conf             9836889879987705


No 200
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}
Probab=41.94  E-value=7.2  Score=18.79  Aligned_cols=16  Identities=25%  Similarity=0.509  Sum_probs=10.0

Q ss_pred             CCCCCCCCCCCEEEEC
Q ss_conf             7831178888744214
Q gi|254780459|r    7 GTKRTCPDTGKRFYDL   22 (129)
Q Consensus         7 G~KR~C~~Cg~KFYDl   22 (129)
                      .-+-+|..||++|==|
T Consensus        19 ~d~iiClecGk~~k~L   34 (87)
T 2jsp_A           19 DDHIVCLECGGSFKSL   34 (87)
T ss_dssp             SSCEECTBTCCEESBH
T ss_pred             CCEEEEECCCCCHHHH
T ss_conf             9805871278305589


No 201
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Probab=41.84  E-value=9.9  Score=17.93  Aligned_cols=33  Identities=12%  Similarity=0.127  Sum_probs=21.7

Q ss_pred             CCCCCCCCCC------EEEECCCC-CCCCCCCCCEECHHH
Q ss_conf             8311788887------44214888-722778987153233
Q gi|254780459|r    8 TKRTCPDTGK------RFYDLNKQ-VIVSPYTQNSWPLAY   40 (129)
Q Consensus         8 ~KR~C~~Cg~------KFYDlnk~-PiiCP~CG~e~~~~~   40 (129)
                      .-..||--|+      ..-+..+. -|+||+.|..|.+..
T Consensus        45 ~~n~CpH~ga~~L~~G~~~~~~~~~~i~Cp~Hg~~F~l~t   84 (113)
T 2jo6_A           45 ISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSD   84 (113)
T ss_dssp             EESSCSSSCCSCSTTSEEEEETTEEEEEETTTTEEEETTT
T ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEECCC
T ss_conf             9771899997205676582544678388998987897898


No 202
>2odx_A Cytochrome C oxidase polypeptide IV; all beta-protein, metallo-protein, oxidoreductase; NMR {Saccharomyces cerevisiae}
Probab=41.72  E-value=11  Score=17.72  Aligned_cols=28  Identities=7%  Similarity=-0.090  Sum_probs=22.1

Q ss_pred             CCCCEEEECCCC-CCCCCCCCCEECHHHH
Q ss_conf             888744214888-7227789871532331
Q gi|254780459|r   14 DTGKRFYDLNKQ-VIVSPYTQNSWPLAYF   41 (129)
Q Consensus        14 ~Cg~KFYDlnk~-PiiCP~CG~e~~~~~~   41 (129)
                      +.-..++=|.|. |--||.||..|.+..+
T Consensus        43 sh~v~W~~l~~g~~~RC~eCG~~fkL~~v   71 (80)
T 2odx_A           43 SHTIMWLKPTVNEVARCWECGSVYKLNPV   71 (80)
T ss_dssp             CSCCEEECCCTTCEEECSSSCCEEEECCC
T ss_pred             CCEEEEEEECCCCCCCCCCCCCEEEEEEE
T ss_conf             74668999607984235668869999880


No 203
>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein structure initiative, PSI; 2.07A {Mus musculus}
Probab=41.25  E-value=8.7  Score=18.28  Aligned_cols=30  Identities=27%  Similarity=0.410  Sum_probs=22.0

Q ss_pred             CCCCCCCCEEEE-----CCC-CCCCCCCCCCEECHH
Q ss_conf             117888874421-----488-872277898715323
Q gi|254780459|r   10 RTCPDTGKRFYD-----LNK-QVIVSPYTQNSWPLA   39 (129)
Q Consensus        10 R~C~~Cg~KFYD-----lnk-~PiiCP~CG~e~~~~   39 (129)
                      -+||..|+.+..     .+. .-|+||+.|..|.+.
T Consensus        55 n~CpHrg~~L~~g~i~~~~~~~~i~CPyHgw~fdl~   90 (157)
T 3d89_A           55 IRCYHSGGPLHLGEIEDFNGQSCIVCPWHKYKITLA   90 (157)
T ss_dssp             SBCTTTCCBGGGSEEEEETTEEEEECTTTCCEEETT
T ss_pred             CCCCCCCCCCCCCEEECCCCCCEEEECCCCCEEECC
T ss_conf             847999972123505337997999978889899899


No 204
>2f4m_A Peptide N-glycanase; glycoproteins, ubiquitin-dependent protein degradation, nucleotide excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: d.3.1.4 PDB: 2f4o_A*
Probab=40.52  E-value=14  Score=17.05  Aligned_cols=45  Identities=9%  Similarity=-0.017  Sum_probs=29.3

Q ss_pred             HHCCCCCCCCCCCEEEECCC----CC------------CCCCCCCCE--E----CHHHHHCCCCCCC
Q ss_conf             22783117888874421488----87------------227789871--5----3233101234434
Q gi|254780459|r    5 ELGTKRTCPDTGKRFYDLNK----QV------------IVSPYTQNS--W----PLAYFEAPTSPEK   49 (129)
Q Consensus         5 elG~KR~C~~Cg~KFYDlnk----~P------------iiCP~CG~e--~----~~~~~~~~~~~~~   49 (129)
                      .|=.|-.|+.||.+---...    +|            -.|+.||+.  |    .|..++..|+|+-
T Consensus        77 ~Wvn~p~C~~Cg~~~~~~~~~~~Pt~~E~~~ga~rVE~y~C~~C~~~~rfPRyn~p~~ll~tr~GrC  143 (295)
T 2f4m_A           77 RWVNNIVCSKCGGETRSRDEALLPNDDELKWGAKNVENHYCDACQLSNRFPRYNNPEKLLETRCGRC  143 (295)
T ss_dssp             EECSSCCCTTTCCCCEECSSCBCCCSHHHHTTCCCEEEEEETTTTEEEEEECCCCHHHHHHHCEESH
T ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCCCCCEECCCCCCHHHHHHHCCCCH
T ss_conf             7658988986899786268888969689707987699998999998316888799899987367458


No 205
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=40.22  E-value=15  Score=16.85  Aligned_cols=32  Identities=25%  Similarity=0.390  Sum_probs=20.1

Q ss_pred             CCCHHHCCCCCCCC--CCCEEEECCCCCCCCCCCCCEECH
Q ss_conf             97522278311788--887442148887227789871532
Q gi|254780459|r    1 MAKPELGTKRTCPD--TGKRFYDLNKQVIVSPYTQNSWPL   38 (129)
Q Consensus         1 MaK~elG~KR~C~~--Cg~KFYDlnk~PiiCP~CG~e~~~   38 (129)
                      |+--++|+.  |.-  |..+  ||  -|++|.+|+..|=.
T Consensus         8 m~~~d~g~~--Cs~~~C~~~--d~--lp~~C~~C~~~FC~   41 (75)
T 1wys_A            8 MAELDIGQH--CQVQHCRQR--DF--LPFVCDGCSGIFCL   41 (75)
T ss_dssp             CCCCCCCCC--CSCTTTCCC--SC--CCEECTTTCCEECS
T ss_pred             CHHCCCCCC--CCCCCCCCC--CC--CCCCCCCCCCHHHH
T ss_conf             510236783--684568886--41--56345130870225


No 206
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.19  E-value=15  Score=16.74  Aligned_cols=29  Identities=24%  Similarity=0.216  Sum_probs=19.1

Q ss_pred             CCCCCCCCEEEEC---CCC-CC--CCCCCCCEECH
Q ss_conf             1178888744214---888-72--27789871532
Q gi|254780459|r   10 RTCPDTGKRFYDL---NKQ-VI--VSPYTQNSWPL   38 (129)
Q Consensus        10 R~C~~Cg~KFYDl---nk~-Pi--iCP~CG~e~~~   38 (129)
                      -+|++|+.-=..|   +|. .+  .|=.||+..+.
T Consensus       104 VlC~~C~sPdT~l~k~~k~~~~~l~C~aCGa~~~v  138 (157)
T 2e9h_A          104 VLCPECENPETDLHVNPKKQTIGNSCKACGYRGML  138 (157)
T ss_dssp             TSCTTTCCSCCEEEEETTTTEEEEECSSSCCEEEC
T ss_pred             EECCCCCCCCEEEEEECCCCEEEEEHHHCCCCCCC
T ss_conf             99899989864999914787998481126998861


No 207
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=39.07  E-value=5.8  Score=19.36  Aligned_cols=10  Identities=10%  Similarity=0.225  Sum_probs=6.4

Q ss_pred             CCCCCCCEEC
Q ss_conf             2778987153
Q gi|254780459|r   28 VSPYTQNSWP   37 (129)
Q Consensus        28 iCP~CG~e~~   37 (129)
                      .||.|+.-|.
T Consensus         4 ~C~~C~KrFs   13 (32)
T 2kfq_A            4 ACPACPKRFM   13 (32)
T ss_dssp             SSSSSCTTHH
T ss_pred             CCCCCCCCCC
T ss_conf             6775555325


No 208
>1s1i_Y L35, YP55, 60S ribosomal protein L37-A; 80S ribosome, 60S ribosomal subunit, EEF2, tRNA translocation, sordarin, cryo-EM; 11.70A {Saccharomyces cerevisiae} SCOP: i.1.1.1
Probab=38.81  E-value=14  Score=16.99  Aligned_cols=23  Identities=17%  Similarity=0.405  Sum_probs=20.7

Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf             1178888744214888722778987
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQVIVSPYTQN   34 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~PiiCP~CG~   34 (129)
                      -.|--||.+=|-+.|.  .|-+||.
T Consensus        16 tlCrRCG~~syH~qK~--~CasCGy   38 (87)
T 1s1i_Y           16 TLCNRCGRRSFHVQKK--TCSSCGY   38 (87)
T ss_dssp             EECTTSSSSEECSSSS--SCSSSCT
T ss_pred             CHHHCCCCCCCEECCC--CCCCCCC
T ss_conf             8420658401130534--4653689


No 209
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.69  E-value=13  Score=17.24  Aligned_cols=29  Identities=14%  Similarity=0.181  Sum_probs=16.8

Q ss_pred             HCCCCCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf             27831178888744214888722778987
Q gi|254780459|r    6 LGTKRTCPDTGKRFYDLNKQVIVSPYTQN   34 (129)
Q Consensus         6 lG~KR~C~~Cg~KFYDlnk~PiiCP~CG~   34 (129)
                      +-.++.|+.|.-.=+.-+..|..||.|+-
T Consensus        25 ~~r~~~C~~C~G~G~~~g~~~~~C~~C~G   53 (104)
T 2ctt_A           25 VNIMDTCERCNGKGNEPGTKVQHCHYCGG   53 (104)
T ss_dssp             SSCCEECSSSSSSSSCTTCCCEECSSSSS
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             55234168888878148981741896545


No 210
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=38.68  E-value=6.8  Score=18.94  Aligned_cols=19  Identities=26%  Similarity=0.517  Sum_probs=16.0

Q ss_pred             HHCCCCCCCCCCCEEEECC
Q ss_conf             2278311788887442148
Q gi|254780459|r    5 ELGTKRTCPDTGKRFYDLN   23 (129)
Q Consensus         5 elG~KR~C~~Cg~KFYDln   23 (129)
                      .-|+|+.|--|-+||-|..
T Consensus         5 ssgikqhcrfckkkysdvk   23 (37)
T 2elu_A            5 SSGIKQHCRFCKKKYSDVK   23 (37)
T ss_dssp             CCCCCCEETTTTEECSSHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
T ss_conf             1668999999998878899


No 211
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=38.12  E-value=8.6  Score=18.30  Aligned_cols=26  Identities=31%  Similarity=0.514  Sum_probs=17.4

Q ss_pred             CCCCCCCCEEE----ECCCC--CCCCCCCCCEE
Q ss_conf             11788887442----14888--72277898715
Q gi|254780459|r   10 RTCPDTGKRFY----DLNKQ--VIVSPYTQNSW   36 (129)
Q Consensus        10 R~C~~Cg~KFY----Dlnk~--PiiCP~CG~e~   36 (129)
                      +-|| ||-+|.    +|..-  -+.||+|.-.+
T Consensus        31 ypCr-CGd~F~it~~dL~~ge~V~~C~sCSL~I   62 (83)
T 1wge_A           31 YPCP-CGDNFAITKEDLENGEDVATCPSCSLII   62 (83)
T ss_dssp             ECCS-SSSCEEEEHHHHHTTCCEEECTTTCCEE
T ss_pred             ECCC-CCCEEEECHHHHHCCCCEEECCCCCCEE
T ss_conf             5789-8998988799986899198199986389


No 212
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.77  E-value=9.3  Score=18.10  Aligned_cols=34  Identities=9%  Similarity=0.002  Sum_probs=22.6

Q ss_pred             CCCCCCCEEEECC------------C--CCCCCCCCCCEECHHHHHCC
Q ss_conf             1788887442148------------8--87227789871532331012
Q gi|254780459|r   11 TCPDTGKRFYDLN------------K--QVIVSPYTQNSWPLAYFEAP   44 (129)
Q Consensus        11 ~C~~Cg~KFYDln------------k--~PiiCP~CG~e~~~~~~~~~   44 (129)
                      .|.-||.+|--.+            |  ....|+.|+..|.-...+..
T Consensus         9 kC~~C~~~F~~~~~L~~H~~~H~~~~~~~~~~C~~C~~~f~~~~~L~~   56 (78)
T 2d9h_A            9 QCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAA   56 (78)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEECCCCCCEECCHHHHHH
T ss_conf             889997631969999999987137767765463997994079999999


No 213
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, polymorphism, metal-binding, phosphoprotein, exchange factor, RAC, zinc, GTPase; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=37.56  E-value=13  Score=17.15  Aligned_cols=29  Identities=7%  Similarity=-0.149  Sum_probs=19.7

Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCEECH
Q ss_conf             11788887442148887227789871532
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQVIVSPYTQNSWPL   38 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~~   38 (129)
                      ..|..|++.|-=|-+.=-.|-.||..+--
T Consensus       358 ~~C~~C~~~f~~~~~r~hhCr~Cg~~vc~  386 (406)
T 2vrw_B          358 TSCKACQMLLRGTFYQGYRCYRCRAPAHK  386 (406)
T ss_dssp             CBCTTTCCBCCSSSSCEEEETTTCCEECG
T ss_pred             CCCCCCCCCCCCCCCCCEECCCCCCEECH
T ss_conf             87561878203101267475458596364


No 214
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.33  E-value=12  Score=17.33  Aligned_cols=33  Identities=6%  Similarity=0.053  Sum_probs=20.6

Q ss_pred             CCCCCCCCCEEE--ECC-------CCCCCCCCCCCEECHHHH
Q ss_conf             311788887442--148-------887227789871532331
Q gi|254780459|r    9 KRTCPDTGKRFY--DLN-------KQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus         9 KR~C~~Cg~KFY--Dln-------k~PiiCP~CG~e~~~~~~   41 (129)
                      ...|+.|++.|-  +|.       ..++.||+||..|....+
T Consensus        17 ~~~C~~C~~~~~~~~l~~H~~~C~~~~~~C~~C~~~~~r~~l   58 (75)
T 2d9k_A           17 LAVCQHCDLELSILKLKEHEDYCGARTELCGNCGRNVLVKDL   58 (75)
T ss_dssp             CEECSSSCCEECHHHHHHHHHHHHHCEEECSSSCCEEETTGG
T ss_pred             CEECCCCCCEECCCHHHHHHHHCCCCCEECCCCCEECCHHHH
T ss_conf             807899987677211767986379977748986928528999


No 215
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=37.22  E-value=16  Score=16.69  Aligned_cols=32  Identities=19%  Similarity=0.195  Sum_probs=20.0

Q ss_pred             HHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEE
Q ss_conf             222783117888874421488872277898715
Q gi|254780459|r    4 PELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSW   36 (129)
Q Consensus         4 ~elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~   36 (129)
                      ..-|-...|+.|.++|.=+.|. =.|=.||..|
T Consensus         4 ~~~~d~~~C~~C~k~F~~~~r~-HhCr~Cg~~v   35 (62)
T 2a20_A            4 EQKGDAPTCGICHKTKFADGCG-HNCSYCQTKF   35 (62)
T ss_dssp             CCSSCCCCCSSSSCSCCCSSCC-EEBTTTCCEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCC
T ss_conf             4478897270507864677777-6064363701


No 216
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=37.10  E-value=15  Score=16.79  Aligned_cols=29  Identities=28%  Similarity=0.504  Sum_probs=22.5

Q ss_pred             HHHCCCC-----CCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf             2227831-----178888744214888722778987
Q gi|254780459|r    4 PELGTKR-----TCPDTGKRFYDLNKQVIVSPYTQN   34 (129)
Q Consensus         4 ~elG~KR-----~C~~Cg~KFYDlnk~PiiCP~CG~   34 (129)
                      +.+|+.+     .|--||.+=|-+.|.  .|.+||.
T Consensus         7 ~SfGKr~~ktH~~CrRCG~~syH~qK~--~CasCGy   40 (57)
T 1vq8_1            7 PSQGKKNTTTHTKCRRCGEKSYHTKKK--VCSSCGF   40 (57)
T ss_dssp             HHHTTCCCCCEEECTTTCSEEEETTTT--EETTTCT
T ss_pred             CCCCCCCCCCCCHHCCCCCHHHHHCCC--CCCCCCC
T ss_conf             644555787506202758224433236--2331588


No 217
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.57  E-value=11  Score=17.55  Aligned_cols=15  Identities=13%  Similarity=0.297  Sum_probs=6.4

Q ss_pred             CCCCCCCCCCCEECH
Q ss_conf             887227789871532
Q gi|254780459|r   24 KQVIVSPYTQNSWPL   38 (129)
Q Consensus        24 k~PiiCP~CG~e~~~   38 (129)
                      |.++.|++|+.+|..
T Consensus         8 kR~v~C~~C~~~~~~   22 (66)
T 2eod_A            8 KRTQPCTYCTKEFVF   22 (66)
T ss_dssp             CCEEECSSSCCEEEH
T ss_pred             CCCCCCCCCCCCCCH
T ss_conf             826659999881158


No 218
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.55  E-value=10  Score=17.86  Aligned_cols=21  Identities=14%  Similarity=0.123  Sum_probs=14.1

Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCEE
Q ss_conf             117888874421488872277898715
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQVIVSPYTQNSW   36 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~   36 (129)
                      ++|--||.      ..--.||.|+.-|
T Consensus        13 ~~C~vC~~------~~kY~Cp~C~~~y   33 (56)
T 2yqq_A           13 VVCVICLE------KPKYRCPACRVPY   33 (56)
T ss_dssp             CCCTTTCS------CCSEECTTTCCEE
T ss_pred             CCCCCCCC------CCCCCCCCCCCCC
T ss_conf             58146949------9864588989882


No 219
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, signaling protein; 2.90A {Chlorobaculum tepidum}
Probab=36.41  E-value=6.7  Score=18.97  Aligned_cols=35  Identities=9%  Similarity=0.098  Sum_probs=21.9

Q ss_pred             CCCCCCCCCCEEEEC---------CCCCCCCCCCCCEECHHHHH
Q ss_conf             831178888744214---------88872277898715323310
Q gi|254780459|r    8 TKRTCPDTGKRFYDL---------NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDl---------nk~PiiCP~CG~e~~~~~~~   42 (129)
                      .+.-||.|..++|..         ++.-++|++|...|....++
T Consensus       479 ~~vpCp~~~~~~~~~~~l~~~~~~g~~~~~c~~~~~~~~v~~ll  522 (535)
T 3dpu_A          479 EFIPLPGHPDELVEYKELLGLEKMGRDRYVSGKLEKVFSVSKML  522 (535)
T ss_dssp             EEEEETTEEEEEEEHHHHHHHHHTTCCEEEETTTTEEEEHHHHH
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCEEEHHHHH
T ss_conf             89879898665767899999997799765678778567799963


No 220
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=36.39  E-value=13  Score=17.23  Aligned_cols=30  Identities=7%  Similarity=-0.052  Sum_probs=20.7

Q ss_pred             CCCCCCCCCEEEECCCCCCCCCCCCCEECHHHHHC
Q ss_conf             31178888744214888722778987153233101
Q gi|254780459|r    9 KRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEA   43 (129)
Q Consensus         9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~   43 (129)
                      .-.||=|+.-|.    +|++-| ||..|.-..+.+
T Consensus        14 ~~~CpI~~~lm~----dPV~~~-cGhtf~r~~I~~   43 (85)
T 2kr4_A           14 EFRDPLMDTLMT----DPVRLP-SGTVMDRSIILR   43 (85)
T ss_dssp             TTBCTTTCSBCS----SEEECT-TSCEEEHHHHHH
T ss_pred             CCCCCCCCCCCC----CCEECC-CCCEECHHHHHH
T ss_conf             489848588225----887869-989772999999


No 221
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=36.16  E-value=14  Score=16.99  Aligned_cols=24  Identities=13%  Similarity=0.202  Sum_probs=18.4

Q ss_pred             CCCCCCC------EEEECCCCCCCCCCCCCEE
Q ss_conf             1788887------4421488872277898715
Q gi|254780459|r   11 TCPDTGK------RFYDLNKQVIVSPYTQNSW   36 (129)
Q Consensus        11 ~C~~Cg~------KFYDlnk~PiiCP~CG~e~   36 (129)
                      .|..|++      +|-+ ++. -+|+-||+.-
T Consensus        87 RC~~C~AYiNp~~~~~~-~~~-w~C~~C~~~N  116 (751)
T 3eh1_A           87 RCRSCRTYINPFVSFID-QRR-WKCNLCYRVN  116 (751)
T ss_dssp             BCTTTCCBCCTTCEESS-SSE-EECTTTCCEE
T ss_pred             CCCCCCCEECCCEEECC-CCE-EECCCCCCCC
T ss_conf             27987388887378847-998-9824799868


No 222
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=36.08  E-value=10  Score=17.83  Aligned_cols=14  Identities=7%  Similarity=0.109  Sum_probs=8.6

Q ss_pred             CCCCCCCCCCEECH
Q ss_conf             87227789871532
Q gi|254780459|r   25 QVIVSPYTQNSWPL   38 (129)
Q Consensus        25 ~PiiCP~CG~e~~~   38 (129)
                      .|--|-.||.-|.+
T Consensus         2 kpy~c~~c~krfsl   15 (28)
T 2kvf_A            2 RPYSCSVCGKRFSL   15 (28)
T ss_dssp             CSEECSSSCCEESC
T ss_pred             CCCCCCCCCCCCCH
T ss_conf             96301643330011


No 223
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A 1rwd_A 1qcv_A 2pve_A 2pvx_A ...
Probab=36.01  E-value=16  Score=16.61  Aligned_cols=19  Identities=32%  Similarity=0.482  Sum_probs=10.4

Q ss_pred             CCEEEECCCCCCCCCCCCCE
Q ss_conf             87442148887227789871
Q gi|254780459|r   16 GKRFYDLNKQVIVSPYTQNS   35 (129)
Q Consensus        16 g~KFYDlnk~PiiCP~CG~e   35 (129)
                      ||.|-+|- .-=+||-||+.
T Consensus        26 GT~F~~LP-~dw~CP~C~a~   44 (52)
T 1yk4_A           26 GTKFEDLP-DDWVCPLCGAP   44 (52)
T ss_dssp             TCCGGGSC-TTCBCTTTCCB
T ss_pred             CCCHHHCC-CCCCCCCCCCC
T ss_conf             99978889-98879499883


No 224
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=35.70  E-value=17  Score=16.46  Aligned_cols=30  Identities=20%  Similarity=0.211  Sum_probs=21.5

Q ss_pred             CCCCCCCCCEEEECCCCC----CCCCCCCCEECH
Q ss_conf             311788887442148887----227789871532
Q gi|254780459|r    9 KRTCPDTGKRFYDLNKQV----IVSPYTQNSWPL   38 (129)
Q Consensus         9 KR~C~~Cg~KFYDlnk~P----iiCP~CG~e~~~   38 (129)
                      .|+-..-+..||.++..+    ++|-.||..++.
T Consensus        70 ~~~~~~~~~~~~~~~~~~hh~HliC~~Cg~i~~~  103 (136)
T 1mzb_A           70 VRHNFDGGHAVFELADSGHHDHMVCVDTGEVIEF  103 (136)
T ss_dssp             EEECSSSSSCEEEESSSCCCEEEEETTTCCEEEE
T ss_pred             EEEEECCCEEEEECCCCCCCCEEEECCCCCEEEE
T ss_conf             9999389818996589998888999999999984


No 225
>2pw4_A Uncharacterized protein DUF1470; YP_510353.1, protein of unknown function DUF1470, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Jannaschia SP} SCOP: d.380.1.1 PDB: 3h0n_A*
Probab=35.68  E-value=14  Score=16.98  Aligned_cols=33  Identities=15%  Similarity=0.252  Sum_probs=22.9

Q ss_pred             CHHHCCCCCC--CCCCCEEEECCCCC---CCCCCCCCE
Q ss_conf             5222783117--88887442148887---227789871
Q gi|254780459|r    3 KPELGTKRTC--PDTGKRFYDLNKQV---IVSPYTQNS   35 (129)
Q Consensus         3 K~elG~KR~C--~~Cg~KFYDlnk~P---iiCP~CG~e   35 (129)
                      ...|+.=|+|  |.|+.-|||.-|..   ==++.||.-
T Consensus       139 ~~~~~Rlr~C~a~~C~~~F~D~Srn~~RRwCS~~CGNR  176 (188)
T 2pw4_A          139 HQNVRRFGICNAHRCDRVYFDTSRNGTRQYCSLACQNR  176 (188)
T ss_dssp             TTCGGGEEECCSTTCCCEEECCSSSCCCCCSSHHHHHH
T ss_pred             CCCHHHHCCCCCCCCCEEEEECCCCCCCCCCCCHHHCH
T ss_conf             76433305179999886877489999987558201389


No 226
>2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling protein/apoptosis complex; 1.80A {Homo sapiens} PDB: 2pop_B
Probab=35.38  E-value=14  Score=17.08  Aligned_cols=19  Identities=5%  Similarity=-0.053  Sum_probs=13.8

Q ss_pred             EEECC-CCCCCCCCCCCEEC
Q ss_conf             42148-88722778987153
Q gi|254780459|r   19 FYDLN-KQVIVSPYTQNSWP   37 (129)
Q Consensus        19 FYDln-k~PiiCP~CG~e~~   37 (129)
                      ||=.+ ++.+.|.+||..+.
T Consensus        47 Fyytg~~D~V~Cf~C~~~l~   66 (94)
T 2poi_A           47 FLYTGEGDTVRCFSCHAAVD   66 (94)
T ss_dssp             EEECSSTTCEEETTTCCEEC
T ss_pred             CEECCCCCEEEECCCCCEEC
T ss_conf             78879998789486688937


No 227
>2qgp_A HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 2.60A {Geobacter metallireducens gs-15}
Probab=35.26  E-value=11  Score=17.62  Aligned_cols=12  Identities=17%  Similarity=0.457  Sum_probs=7.3

Q ss_pred             CCCCCCCEECHH
Q ss_conf             277898715323
Q gi|254780459|r   28 VSPYTQNSWPLA   39 (129)
Q Consensus        28 iCP~CG~e~~~~   39 (129)
                      +|++||..|...
T Consensus        37 ~C~yCg~~~~~~   48 (112)
T 2qgp_A           37 ICHYCGEIFPPE   48 (112)
T ss_dssp             BCTTTCCBCCGG
T ss_pred             CCCCCCCCCCCC
T ss_conf             809991999899


No 228
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA- directed RNA polymerase, primosome, late protein; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=35.20  E-value=21  Score=15.87  Aligned_cols=27  Identities=7%  Similarity=0.066  Sum_probs=17.9

Q ss_pred             CCCCCCCC----EEEECCCCCCCCCCCCCEECH
Q ss_conf             11788887----442148887227789871532
Q gi|254780459|r   10 RTCPDTGK----RFYDLNKQVIVSPYTQNSWPL   38 (129)
Q Consensus        10 R~C~~Cg~----KFYDlnk~PiiCP~CG~e~~~   38 (129)
                      --||.||.    ++|+=+  -.-|=.||+-+..
T Consensus        15 ~pCP~Cg~~d~~~~~~dg--~~~C~~Cg~~~~~   45 (255)
T 1nui_A           15 IPCDNCGSSDGNSLFSDG--HTFCYVCEKWTAG   45 (255)
T ss_dssp             ECCSSSCCSSCEEEETTS--CEEETTTCCEEC-
T ss_pred             CCCCCCCCCCCCEEEECC--CEEECCCCCCCCC
T ss_conf             899989899998795299--8897679984478


No 229
>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A
Probab=35.16  E-value=11  Score=17.68  Aligned_cols=31  Identities=16%  Similarity=0.176  Sum_probs=19.9

Q ss_pred             CCCCCCEEEEC-----------CCCCCCCCC--CCCEECHHHHH
Q ss_conf             78888744214-----------888722778--98715323310
Q gi|254780459|r   12 CPDTGKRFYDL-----------NKQVIVSPY--TQNSWPLAYFE   42 (129)
Q Consensus        12 C~~Cg~KFYDl-----------nk~PiiCP~--CG~e~~~~~~~   42 (129)
                      |+.||..|.--           +..|-.||.  ||..|.-...+
T Consensus         6 ~~~C~k~F~~~~~L~~H~~~H~~~kpy~C~~~~C~k~F~~~~~L   49 (85)
T 2j7j_A            6 FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRL   49 (85)
T ss_dssp             STTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCHHHH
T ss_conf             89998831989999999987389998416868767343766788


No 230
>2b4y_A NAD-dependent deacetylase sirtuin-5; histone deacetylase, structural genomics, structural genomics consortium, SGC, hydrolase; HET: APR EPE; 1.90A {Homo sapiens} SCOP: c.31.1.5 PDB: 2nyr_A*
Probab=35.10  E-value=15  Score=16.91  Aligned_cols=15  Identities=20%  Similarity=0.341  Sum_probs=11.1

Q ss_pred             CCCCCCCCCEEEECC
Q ss_conf             311788887442148
Q gi|254780459|r    9 KRTCPDTGKRFYDLN   23 (129)
Q Consensus         9 KR~C~~Cg~KFYDln   23 (129)
                      .-.|+.|+..|+..+
T Consensus       132 ~~~C~~C~~~~~~~~  146 (271)
T 2b4y_A          132 KTRCTSCGVVAENYK  146 (271)
T ss_dssp             EEEETTTCCEEECCC
T ss_pred             EEEECCCCCCHHHHH
T ss_conf             789889998211222


No 231
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=35.08  E-value=17  Score=16.47  Aligned_cols=27  Identities=19%  Similarity=0.061  Sum_probs=19.2

Q ss_pred             CCCCCCCCCCCEEEECCCCCCCCCCCCCEEC
Q ss_conf             7831178888744214888722778987153
Q gi|254780459|r    7 GTKRTCPDTGKRFYDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus         7 G~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~   37 (129)
                      -.|..|..|++|-- |  ..+.| +||..|=
T Consensus        23 ~~~~RC~~C~kKl~-l--~~~~C-rCg~~FC   49 (74)
T 1wfl_A           23 PKKNRCFMCRKKVG-L--TGFDC-RCGNLFC   49 (74)
T ss_dssp             SCTTBCSSSCCBCG-G--GCEEC-TTSCEEC
T ss_pred             CCCCCCHHCCCCCC-C--CCEEC-CCCCHHH
T ss_conf             87881510288857-7--77361-7989132


No 232
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxidoreductase; 1.60A {Burkholderia xenovorans LB400} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B*
Probab=35.05  E-value=14  Score=16.93  Aligned_cols=30  Identities=13%  Similarity=0.232  Sum_probs=20.1

Q ss_pred             CCCCCCCEEEE---CCCCCCCCCCCCCEECHHH
Q ss_conf             17888874421---4888722778987153233
Q gi|254780459|r   11 TCPDTGKRFYD---LNKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus        11 ~C~~Cg~KFYD---lnk~PiiCP~CG~e~~~~~   40 (129)
                      .||..|...-.   ....-|+||..|..|.+..
T Consensus        45 ~CpH~g~~L~~g~~~~~~~i~Cp~H~~~f~l~t   77 (112)
T 1fqt_A           45 RCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRT   77 (112)
T ss_dssp             BCTTSSCBSSTTCCEETTEEECTTTCCEEETTT
T ss_pred             CCCCCCCEEECEEEECCCEEEECCCCCEEECCC
T ss_conf             488778683000273698558088699998997


No 233
>1vzi_A Desulfoferrodoxin; ferrocyanide, microspectrophotometry, redox states, photoreduction, dinuclear iron cluster, oxidoreductase; 1.15A {Desulfovibrio baarsii} SCOP: b.1.13.1 g.41.5.2 PDB: 1vzh_A* 1vzg_A 2ji1_A 2ji2_A 2ji3_A 1dfx_A
Probab=34.81  E-value=14  Score=16.98  Aligned_cols=25  Identities=16%  Similarity=0.171  Sum_probs=14.1

Q ss_pred             CCCCCCCEEEEC--CCCCCCCCCCCCEEC
Q ss_conf             178888744214--888722778987153
Q gi|254780459|r   11 TCPDTGKRFYDL--NKQVIVSPYTQNSWP   37 (129)
Q Consensus        11 ~C~~Cg~KFYDl--nk~PiiCP~CG~e~~   37 (129)
                      +|+.||.-+.=+  +.-++.|  ||....
T Consensus         9 ~C~~CGniv~~~~~~~~~~~C--Cg~~m~   35 (126)
T 1vzi_A            9 KCEVCGNIVEVLNGGIGELVC--CNQDMK   35 (126)
T ss_dssp             ECTTTCCEEEEEECCSSCEEE--TTEECE
T ss_pred             ECCCCCCEEEEECCCCCCEEE--ECCCHH
T ss_conf             879999799995289715575--098610


No 234
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=34.49  E-value=23  Score=15.70  Aligned_cols=30  Identities=17%  Similarity=0.387  Sum_probs=20.1

Q ss_pred             HCCCCCCCC--CCCEEEECCCCCCCCCCCCCEECHH
Q ss_conf             278311788--8874421488872277898715323
Q gi|254780459|r    6 LGTKRTCPD--TGKRFYDLNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus         6 lG~KR~C~~--Cg~KFYDlnk~PiiCP~CG~e~~~~   39 (129)
                      -.++-.|..  |..  .+|  -|++|++|+.-|=..
T Consensus        22 ~~~~~~Cs~~~C~~--~~~--lp~~C~~C~~~FC~~   53 (86)
T 1wfe_A           22 EHKSYSCSFKGCTD--VEL--VAVICPYCEKNFCLR   53 (86)
T ss_dssp             CSCCEECCSTTCCC--EES--SCEECTTTCCEECGG
T ss_pred             CCCCCCCCCCCCCC--CCC--CEEECCCCCCCHHHC
T ss_conf             86678678778888--753--123651008701053


No 235
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=33.98  E-value=15  Score=16.77  Aligned_cols=30  Identities=7%  Similarity=-0.137  Sum_probs=21.1

Q ss_pred             CCCCCCCCC------EEEECCCCCCCCCCCCCEECH
Q ss_conf             311788887------442148887227789871532
Q gi|254780459|r    9 KRTCPDTGK------RFYDLNKQVIVSPYTQNSWPL   38 (129)
Q Consensus         9 KR~C~~Cg~------KFYDlnk~PiiCP~CG~e~~~   38 (129)
                      ..+||+|+.      ||..=+|.-=+|=+||..++.
T Consensus       135 ~Lvdp~~~k~tRVg~k~~edGkKVRv~kktG~~Id~  170 (191)
T 3bbo_W          135 MLILKEQEVADRVGHKILEDVRKVRYLIKTGEIVDT  170 (191)
T ss_dssp             EECSSSSCCCCCCCCCSSSCCCCCSSSCCSSSCCCC
T ss_pred             EEECCCCCCCEEEEEEECCCCCEEEEEECCCCCCCC
T ss_conf             787688998438899997799599999258982488


No 236
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, metal transport, zinc, iron, repressor, cytoplasm, DNA-binding; 2.60A {Vibrio cholerae}
Probab=33.90  E-value=13  Score=17.25  Aligned_cols=29  Identities=21%  Similarity=0.271  Sum_probs=20.8

Q ss_pred             CCCCCCCCEEEECCCCC----CCCCCCCCEECH
Q ss_conf             11788887442148887----227789871532
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQV----IVSPYTQNSWPL   38 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~P----iiCP~CG~e~~~   38 (129)
                      |+=..-|..||.++..+    ++|-.||..+..
T Consensus        70 ~i~~~~~~~~~~~~~~~~h~hliC~~Cg~i~~~  102 (150)
T 2w57_A           70 RHHFEGGKSVFELSTQHHHDHLVCLDCGEVIEF  102 (150)
T ss_dssp             EEECGGGCEEEEECCSSCCEEEEETTTCCEEEE
T ss_pred             EEEECCCEEEEECCCCCCCCEEEECCCCCEEEE
T ss_conf             997179727996589984267999999999983


No 237
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.73  E-value=15  Score=16.87  Aligned_cols=15  Identities=13%  Similarity=0.319  Sum_probs=10.8

Q ss_pred             CCCCCCCCCCCCEEC
Q ss_conf             888722778987153
Q gi|254780459|r   23 NKQVIVSPYTQNSWP   37 (129)
Q Consensus        23 nk~PiiCP~CG~e~~   37 (129)
                      ...-.-||+|+.-|-
T Consensus         6 ~~RA~KCPyCd~~F~   20 (37)
T 2elp_A            6 SGRAMKCPYCDFYFM   20 (37)
T ss_dssp             CCCCEECSSSSCEEC
T ss_pred             CCCCCCCCCHHHHHH
T ss_conf             686314870168885


No 238
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=33.10  E-value=8.6  Score=18.29  Aligned_cols=30  Identities=23%  Similarity=0.280  Sum_probs=21.3

Q ss_pred             CCCCCCCCC-EEEECCCCCCCC---CCCCCEECH
Q ss_conf             311788887-442148887227---789871532
Q gi|254780459|r    9 KRTCPDTGK-RFYDLNKQVIVS---PYTQNSWPL   38 (129)
Q Consensus         9 KR~C~~Cg~-KFYDlnk~PiiC---P~CG~e~~~   38 (129)
                      -|-|..|.. -+.-++..|+.|   |.+|.|+..
T Consensus       345 i~~Ci~cn~c~~~~~~~~~~~C~vNp~~g~e~~~  378 (690)
T 3k30_A          345 IRECIGCNICVSGDLTMSPIRCTQNPSMGEEWRR  378 (690)
T ss_dssp             CCCCCCCCHHHHHHHTTSCCCCSSCTTTTTTTTT
T ss_pred             CCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             5231102320204434999818448110245524


No 239
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans R1} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=33.02  E-value=22  Score=15.79  Aligned_cols=28  Identities=14%  Similarity=0.144  Sum_probs=21.9

Q ss_pred             CCCCCCCC---EEEECCCCCCCCCCCCCEEC
Q ss_conf             11788887---44214888722778987153
Q gi|254780459|r   10 RTCPDTGK---RFYDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus        10 R~C~~Cg~---KFYDlnk~PiiCP~CG~e~~   37 (129)
                      -.|..||.   .||++..-=++|+.|+....
T Consensus       151 ~~C~~cg~~~~~~f~~~~Gg~vC~~c~~~~~  181 (244)
T 1u5k_A          151 ARCARCGAPDPEHPDPLGGQLLCSKCAALPP  181 (244)
T ss_dssp             SBCTTTCCBSCCEECTTTSSEECTTTCSSCC
T ss_pred             CCHHCCCCCCCCCEEHHCCEEECCCCCCCCC
T ss_conf             0030389968750546209777767767898


No 240
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.98  E-value=14  Score=17.10  Aligned_cols=26  Identities=8%  Similarity=0.116  Sum_probs=16.8

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCEECHHHH
Q ss_conf             1788887442148887227789871532331
Q gi|254780459|r   11 TCPDTGKRFYDLNKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~   41 (129)
                      .|+=|.-.|    ++|++.| ||+.|--.=+
T Consensus        17 ~C~IC~~~~----~~~v~~~-CgH~fC~~Ci   42 (71)
T 2d8t_A           17 ECAICLQTC----VHPVSLP-CKHVFCYLCV   42 (71)
T ss_dssp             BCSSSSSBC----SSEEEET-TTEEEEHHHH
T ss_pred             CCEEECCCC----CCCEEEC-CCCCCCHHHH
T ss_conf             290339214----8828948-9996069999


No 241
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=32.63  E-value=8.5  Score=18.34  Aligned_cols=26  Identities=35%  Similarity=0.595  Sum_probs=17.5

Q ss_pred             CCCCCCCCEEE----ECCC--CCCCCCCCCCEE
Q ss_conf             11788887442----1488--872277898715
Q gi|254780459|r   10 RTCPDTGKRFY----DLNK--QVIVSPYTQNSW   36 (129)
Q Consensus        10 R~C~~Cg~KFY----Dlnk--~PiiCP~CG~e~   36 (129)
                      +-|| ||-+|-    +|..  .-+.||+|.--+
T Consensus        24 ypCr-CGd~F~ite~dLe~ge~vv~C~sCSL~I   55 (83)
T 1yop_A           24 YPCP-CGDRFQIYLDDMFEGEKVAVCPSCSLMI   55 (83)
T ss_dssp             EEET-TTEEEEEEHHHHHTTCCEEECSSSCCEE
T ss_pred             ECCC-CCCEEEECHHHHHCCCEEEECCCCCCEE
T ss_conf             6268-8996899999982899699799996189


No 242
>1ejp_A Syndecan-4; symmetric-parallel-interwinded dimer, signaling protein; NMR {Synthetic} SCOP: j.80.1.1 PDB: 1ejq_A
Probab=32.23  E-value=14  Score=17.03  Aligned_cols=17  Identities=35%  Similarity=0.419  Sum_probs=11.1

Q ss_pred             EEECCCCCCCCCCCCCE
Q ss_conf             42148887227789871
Q gi|254780459|r   19 FYDLNKQVIVSPYTQNS   35 (129)
Q Consensus        19 FYDlnk~PiiCP~CG~e   35 (129)
                      -|||+|.||---.--++
T Consensus         9 sydlgkkpiykkapt~e   25 (28)
T 1ejp_A            9 SYDLGKKPIYKKAPTNE   25 (28)
T ss_dssp             CCCCCSCCCCCCCCCCC
T ss_pred             CCCCCCCCCCCCCCCCC
T ss_conf             42246674212376520


No 243
>1v54_F VI, cytochrome C oxidase polypeptide VB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: g.41.5.3 PDB: 1oco_F* 1occ_F* 1ocz_F* 1ocr_F* 1v55_F* 2dyr_F* 2dys_F* 2eij_F* 2eik_F* 2eil_F* 2eim_F* 2ein_F* 2occ_F* 2zxw_F* 3abk_F* 3abl_F* 3abm_F* 3ag1_F* 3ag2_F* 3ag3_F* ...
Probab=32.00  E-value=22  Score=15.80  Aligned_cols=23  Identities=17%  Similarity=0.205  Sum_probs=17.3

Q ss_pred             CCEEEECCCC-CCCCCCCCCEECH
Q ss_conf             8744214888-7227789871532
Q gi|254780459|r   16 GKRFYDLNKQ-VIVSPYTQNSWPL   38 (129)
Q Consensus        16 g~KFYDlnk~-PiiCP~CG~e~~~   38 (129)
                      -..++=|.|. |--||.||..|.+
T Consensus        68 ~v~W~~l~~g~p~RC~eCG~~fkL   91 (98)
T 1v54_F           68 TVIWFWLHKGEAQRCPSCGTHYKL   91 (98)
T ss_dssp             CCEEEEEESSSCEECTTTCCEEEE
T ss_pred             EEEEEEEECCCCCCCCCCCCEEEE
T ss_conf             348899867996345877858998


No 244
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=31.97  E-value=13  Score=17.13  Aligned_cols=31  Identities=16%  Similarity=0.071  Sum_probs=23.2

Q ss_pred             HHCCCCCCCCCCCEEEECCCCCCCCCCCCCE
Q ss_conf             2278311788887442148887227789871
Q gi|254780459|r    5 ELGTKRTCPDTGKRFYDLNKQVIVSPYTQNS   35 (129)
Q Consensus         5 elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e   35 (129)
                      .+=.++.|+.|.-.=+--+..+.+||.|+-.
T Consensus         7 ~i~~~~~C~~C~G~G~~~g~~~~~C~~C~G~   37 (79)
T 1exk_A            7 RIPTLEECDVCHGSGAKPGTQPQTCPTCHGS   37 (79)
T ss_dssp             CCCCEEECGGGTTTSBCSSSCCEECTTTTTS
T ss_pred             ECCCCCCCCCCCCEEECCCCCCCCCCCCCCE
T ss_conf             7635578889977418899988289887881


No 245
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.82  E-value=15  Score=16.84  Aligned_cols=19  Identities=0%  Similarity=-0.071  Sum_probs=14.2

Q ss_pred             CCCCCCCCCCCCEECHHHH
Q ss_conf             8887227789871532331
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~   41 (129)
                      +..|-.|+.||..|.-...
T Consensus         7 GeKpy~C~~CgK~F~~~s~   25 (42)
T 2yte_A            7 GEKPYSCAECKETFSDNNR   25 (42)
T ss_dssp             SCCSCBCTTTCCBCSSHHH
T ss_pred             CCCCEECCCCCCEECCHHH
T ss_conf             9889628998895286468


No 246
>1nnq_A Rubrerythrin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.35A {Pyrococcus furiosus} SCOP: a.25.1.1 g.41.5.1 PDB: 2hr5_A
Probab=31.62  E-value=15  Score=16.87  Aligned_cols=10  Identities=10%  Similarity=0.149  Sum_probs=7.6

Q ss_pred             CCCCCCCCEE
Q ss_conf             2277898715
Q gi|254780459|r   27 IVSPYTQNSW   36 (129)
Q Consensus        27 iiCP~CG~e~   36 (129)
                      -+||.||..+
T Consensus       140 ~vC~~CG~i~  149 (171)
T 1nnq_A          140 YICPICGYTA  149 (171)
T ss_dssp             EECTTTCCEE
T ss_pred             EECCCCCCCC
T ss_conf             5899893938


No 247
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=31.42  E-value=15  Score=16.77  Aligned_cols=32  Identities=16%  Similarity=0.218  Sum_probs=22.4

Q ss_pred             CCCCCCCCCCEEEECCCCCCCCCCCCCEECHHHHHCC
Q ss_conf             8311788887442148887227789871532331012
Q gi|254780459|r    8 TKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEAP   44 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~~   44 (129)
                      .--+||=|+    ++=++|++.| ||..|.-.-+.+-
T Consensus         7 ~~f~CpIc~----~~m~dPV~~~-cGhtfc~~ci~~~   38 (78)
T 1t1h_A            7 EYFRCPISL----ELMKDPVIVS-TGQTYERSSIQKW   38 (78)
T ss_dssp             SSSSCTTTS----CCCSSEEEET-TTEEEEHHHHHHH
T ss_pred             CCCCCCCCC----CHHHCCEECC-CCCEEEHHHHHHH
T ss_conf             747991739----2633988837-9986609999999


No 248
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=31.38  E-value=23  Score=15.72  Aligned_cols=29  Identities=14%  Similarity=0.049  Sum_probs=18.9

Q ss_pred             CCCCCCCC---EEEECCCCCC---CCCCCCCEECH
Q ss_conf             11788887---4421488872---27789871532
Q gi|254780459|r   10 RTCPDTGK---RFYDLNKQVI---VSPYTQNSWPL   38 (129)
Q Consensus        10 R~C~~Cg~---KFYDlnk~Pi---iCP~CG~e~~~   38 (129)
                      -+|+.|+.   +++=-+|.-+   .|=.||+.-+.
T Consensus        97 VlC~~C~sPeT~l~k~~k~~~~~l~C~aCGa~~~v  131 (170)
T 2g2k_A           97 VLCPECENPETDLHVNPKKQTIGNSCKACGYRGML  131 (170)
T ss_dssp             HSCTTTSSSCEEEEEETTTTEEEEEETTTCCCCCS
T ss_pred             EECCCCCCCCEEEEEECCCCEEECCCCCCCCCCCC
T ss_conf             89899999872899905887886651106898864


No 249
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=31.33  E-value=22  Score=15.83  Aligned_cols=27  Identities=22%  Similarity=0.450  Sum_probs=17.3

Q ss_pred             CCCCCCCCCCEE-----------------EECCCCCCCCCCCCCE
Q ss_conf             831178888744-----------------2148887227789871
Q gi|254780459|r    8 TKRTCPDTGKRF-----------------YDLNKQVIVSPYTQNS   35 (129)
Q Consensus         8 ~KR~C~~Cg~KF-----------------YDlnk~PiiCP~CG~e   35 (129)
                      .|.+|..||--|                 -||- .-=+||-||+.
T Consensus         6 ~ky~C~~CgyiYDp~~Gd~~~gIppGT~F~dLP-~dw~CP~C~a~   49 (70)
T 1dx8_A            6 GKYECEACGYIYEPEKGDKFAGIPPGTPFVDLS-DSFMCPACRSP   49 (70)
T ss_dssp             SCEEETTTCCEECTTTCCTTTTCCSSCCGGGSC-TTCBCTTTCCB
T ss_pred             CCEEECCCCEEECCCCCCCCCCCCCCCCHHHCC-CCCCCCCCCCC
T ss_conf             847819999087866678466879889967888-98779199985


No 250
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=31.27  E-value=24  Score=15.59  Aligned_cols=35  Identities=6%  Similarity=0.246  Sum_probs=25.1

Q ss_pred             CCCCCCCCCCCEEEECCCCCCCCCCCCCEECHHHH
Q ss_conf             78311788887442148887227789871532331
Q gi|254780459|r    7 GTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus         7 G~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~   41 (129)
                      |-..+|.-|+.....=...=|.|-+|+.-|-..=+
T Consensus         4 g~~~vC~vC~~~~~~~~~~lv~Cd~C~~~~H~~C~   38 (66)
T 2yt5_A            4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCH   38 (66)
T ss_dssp             CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTS
T ss_pred             CCCCCCCCCCCCCCCCCCCEEECCCCCCHHCHHHC
T ss_conf             98280638898988999818787999870163004


No 251
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}
Probab=31.03  E-value=18  Score=16.40  Aligned_cols=31  Identities=16%  Similarity=0.333  Sum_probs=22.5

Q ss_pred             CCCCCCCCCEE--EECCCCCCCCCCCCCEECHH
Q ss_conf             31178888744--21488872277898715323
Q gi|254780459|r    9 KRTCPDTGKRF--YDLNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus         9 KR~C~~Cg~KF--YDlnk~PiiCP~CG~e~~~~   39 (129)
                      -.+||.-|...  ..+...-|+||+.|..|.+.
T Consensus        42 ~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~F~~~   74 (108)
T 2i7f_A           42 DNLCTHGNAMLTDGYQDGTIIECPFHGGSFDIA   74 (108)
T ss_dssp             ESBCSSSSCBGGGSEEETTEEECSSTTCEEETT
T ss_pred             EEECCCCCCEEECCCCCCCEEEECCCCCEEECC
T ss_conf             765887785840476888999956988399999


No 252
>3jyw_Y 60S ribosomal protein L37(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=30.90  E-value=22  Score=15.78  Aligned_cols=22  Identities=18%  Similarity=0.427  Sum_probs=19.7

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf             178888744214888722778987
Q gi|254780459|r   11 TCPDTGKRFYDLNKQVIVSPYTQN   34 (129)
Q Consensus        11 ~C~~Cg~KFYDlnk~PiiCP~CG~   34 (129)
                      .|--||.+=|-+.|.  +|-+||.
T Consensus        17 ~CrrCG~~syH~qK~--~CasCGy   38 (52)
T 3jyw_Y           17 LCNRCGRRSFHVQKK--TCSSCGY   38 (52)
T ss_dssp             CCSSSCCCCEETTTC--CCSSSCS
T ss_pred             HHCCCCCHHCEECCC--CCCCCCC
T ss_conf             200748322031446--0232689


No 253
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.26  E-value=21  Score=15.87  Aligned_cols=27  Identities=11%  Similarity=0.138  Sum_probs=18.2

Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCEECHHHH
Q ss_conf             11788887442148887227789871532331
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~   41 (129)
                      -.|+=|--.|    +.|++.| ||+.|=..=+
T Consensus        16 ~~C~IC~~~~----~~p~~~~-C~H~fC~~Ci   42 (81)
T 2csy_A           16 FRCFICRQAF----QNPVVTK-CRHYFCESCA   42 (81)
T ss_dssp             SBCSSSCSBC----CSEEECT-TSCEEEHHHH
T ss_pred             CCCCCCCCCC----CCCEECC-CCCCHHHHHH
T ss_conf             9997687320----8937847-9980249999


No 254
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=30.11  E-value=12  Score=17.32  Aligned_cols=29  Identities=10%  Similarity=0.251  Sum_probs=17.1

Q ss_pred             HH-CCCCCCCCCCCEEEECCCCCCCCCCCCCEEC
Q ss_conf             22-7831178888744214888722778987153
Q gi|254780459|r    5 EL-GTKRTCPDTGKRFYDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus         5 el-G~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~   37 (129)
                      +| +-...|..|..-|    +.-+.||-|+.+..
T Consensus        43 ~~~~g~~hC~~C~~~f----~~~a~CPdC~~~Lq   72 (101)
T 2jne_A           43 DQDNGHARCRSCGEFI----EMKALCPDCHQPLQ   72 (101)
T ss_dssp             EEETTEEEETTTCCEE----EEEEECTTTCSBCE
T ss_pred             EECCCCEECHHHHHHH----HHEECCCCCCCHHH
T ss_conf             2479979967776556----76156974020999


No 255
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=29.88  E-value=13  Score=17.15  Aligned_cols=11  Identities=9%  Similarity=0.123  Sum_probs=6.7

Q ss_pred             CCCCCCCEECH
Q ss_conf             27789871532
Q gi|254780459|r   28 VSPYTQNSWPL   38 (129)
Q Consensus        28 iCP~CG~e~~~   38 (129)
                      .||.|+.-|.-
T Consensus         4 ~C~~C~k~FsR   14 (33)
T 1rim_A            4 ACPECPKRFMR   14 (33)
T ss_dssp             CCSSSCCCCSS
T ss_pred             CCCCCCCCCCH
T ss_conf             78777773143


No 256
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=29.71  E-value=27  Score=15.22  Aligned_cols=27  Identities=11%  Similarity=0.087  Sum_probs=20.1

Q ss_pred             CCCCCCCCCCCEEEECCCCCCCCCCCCCEEC
Q ss_conf             7831178888744214888722778987153
Q gi|254780459|r    7 GTKRTCPDTGKRFYDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus         7 G~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~   37 (129)
                      -+|..|..|++|.-   =.++.|- ||..|=
T Consensus        13 ~k~~RC~~C~KKl~---l~~~~Cr-Cg~~FC   39 (64)
T 1wfh_A           13 QRPNRCTVCRKRVG---LTGFMCR-CGTTFC   39 (64)
T ss_dssp             SSCCCCTTTCCCCC---TTCEECS-SSCEEC
T ss_pred             CCCCCCHHHCCCCC---CEEEECC-CCCCHH
T ss_conf             88981820097847---5605737-989344


No 257
>1hxr_A Guanine nucleotide exchange factor MSS4; RAB GTPase, membrane trafficking, Zn binding site, metal binding protein; 1.65A {Rattus norvegicus} SCOP: b.88.1.1 PDB: 1fwq_A 2fu5_A
Probab=29.69  E-value=15  Score=16.74  Aligned_cols=14  Identities=7%  Similarity=0.185  Sum_probs=11.2

Q ss_pred             CCCCCCCCCCCCEE
Q ss_conf             88872277898715
Q gi|254780459|r   23 NKQVIVSPYTQNSW   36 (129)
Q Consensus        23 nk~PiiCP~CG~e~   36 (129)
                      |++-|+||.||..+
T Consensus         9 N~~~v~C~~C~S~I   22 (115)
T 1hxr_A            9 NRKAVLCQRCGSRV   22 (115)
T ss_dssp             BSSCEEETTTCCEE
T ss_pred             CCCEEECCCCCCEE
T ss_conf             87779899999888


No 258
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, apoptosis, cytoplasm, metal-binding, nucleus, phosphoprotein, transcription; 1.80A {Homo sapiens}
Probab=29.47  E-value=15  Score=16.82  Aligned_cols=20  Identities=0%  Similarity=-0.209  Sum_probs=13.2

Q ss_pred             CCCCCCCCCCCEECHHHHHC
Q ss_conf             88722778987153233101
Q gi|254780459|r   24 KQVIVSPYTQNSWPLAYFEA   43 (129)
Q Consensus        24 k~PiiCP~CG~e~~~~~~~~   43 (129)
                      ..|-.||-||.-|--..-++
T Consensus         5 ~Kp~~C~vC~krYKn~nGL~   24 (48)
T 3iuf_A            5 DKPYACDICGKRYKNRPGLS   24 (48)
T ss_dssp             TSCEECTTTCCEESSHHHHH
T ss_pred             CCCCCCCHHHHHHCCCCCCH
T ss_conf             77610612435542787620


No 259
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=29.36  E-value=18  Score=16.38  Aligned_cols=33  Identities=15%  Similarity=0.303  Sum_probs=21.3

Q ss_pred             CCCC-CCCCEEE----------ECCCCCCCCCCCCCEECHHHHH
Q ss_conf             1178-8887442----------1488872277898715323310
Q gi|254780459|r   10 RTCP-DTGKRFY----------DLNKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        10 R~C~-~Cg~KFY----------Dlnk~PiiCP~CG~e~~~~~~~   42 (129)
                      ..|| .||.++-          .=-+.++.|++||..|....+.
T Consensus        17 v~C~~~C~~~i~r~~l~~H~~~~C~~r~v~C~~C~~~~~~~~l~   60 (76)
T 2yuc_A           17 IPCPNRCPMKLSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYE   60 (76)
T ss_dssp             CBCTTCCSCBCCSSSSTTTTTTSCTTSCCCCSSSCCCCCHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf             47761204496898998665662895561799997304899999


No 260
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2hst_A
Probab=29.35  E-value=14  Score=16.96  Aligned_cols=29  Identities=14%  Similarity=0.040  Sum_probs=19.4

Q ss_pred             CCCCCCCCCEEEE-------CCCCCCCCCCCCCEEC
Q ss_conf             3117888874421-------4888722778987153
Q gi|254780459|r    9 KRTCPDTGKRFYD-------LNKQVIVSPYTQNSWP   37 (129)
Q Consensus         9 KR~C~~Cg~KFYD-------lnk~PiiCP~CG~e~~   37 (129)
                      +-.|++||...-=       -.+.+..||.||.+..
T Consensus       332 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (437)
T 1dt9_A          332 VLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHE  367 (437)
T ss_dssp             CC---------CCCBCTTCSSCCCCCC---------
T ss_pred             EEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHH
T ss_conf             996488873378850510024555567754574310


No 261
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=28.90  E-value=18  Score=16.36  Aligned_cols=19  Identities=16%  Similarity=0.066  Sum_probs=13.2

Q ss_pred             ECCCCCCCCCCCCCEECHH
Q ss_conf             1488872277898715323
Q gi|254780459|r   21 DLNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus        21 Dlnk~PiiCP~CG~e~~~~   39 (129)
                      .|.+---.||-||++..-+
T Consensus        42 ELk~a~GkCPvCgreLtEe   60 (112)
T 1l8d_A           42 ELKKAKGKCPVCGRELTDE   60 (112)
T ss_dssp             HHTTCSEECTTTCCEECHH
T ss_pred             HHHHHCCCCCCCCCCCCHH
T ss_conf             9997478799889937689


No 262
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3
Probab=28.80  E-value=30  Score=15.01  Aligned_cols=32  Identities=19%  Similarity=0.217  Sum_probs=21.4

Q ss_pred             CCCCCCCCCE------EEECCCC-CCCCCCCCCEECHHH
Q ss_conf             3117888874------4214888-722778987153233
Q gi|254780459|r    9 KRTCPDTGKR------FYDLNKQ-VIVSPYTQNSWPLAY   40 (129)
Q Consensus         9 KR~C~~Cg~K------FYDlnk~-PiiCP~CG~e~~~~~   40 (129)
                      --.||--|+.      +.+.+.. =|.||+-|..|++..
T Consensus        44 ~n~CpH~g~~L~~~g~~~~~~~~~~i~Cp~Hg~~Fdl~t   82 (119)
T 3c0d_A           44 QDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKS   82 (119)
T ss_dssp             ESEETTTTEECGGGSEEEESSSSEEEECTTTCCEEETTT
T ss_pred             ECCCCCCCCCCCCCCEEECCCCCCEEECCCCCCEEECCC
T ss_conf             862899995133385540149942798886898999998


No 263
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=28.79  E-value=24  Score=15.53  Aligned_cols=31  Identities=10%  Similarity=0.055  Sum_probs=25.3

Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCEECHHH
Q ss_conf             1178888744214888722778987153233
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~   40 (129)
                      .+|.-|+...++-+..=|.|-.|+.-|-+.=
T Consensus        17 ~~C~vC~~~~~~~~~~~i~Cd~C~~~~H~~C   47 (88)
T 1wev_A           17 LACVVCRQMTVASGNQLVECQECHNLYHQDC   47 (88)
T ss_dssp             CSCSSSCCCCCCTTCCEEECSSSCCEEETTT
T ss_pred             CCCCCCCCCCCCCCCEEEECCCCCCCCCHHH
T ss_conf             9875889986889997878999975034625


No 264
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.77  E-value=18  Score=16.32  Aligned_cols=20  Identities=0%  Similarity=-0.174  Sum_probs=14.3

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +..|-.|+.||..|.-...+
T Consensus         8 Gekpy~C~~Cgk~F~~~~~L   27 (42)
T 2eos_A            8 GEKPYPCEICGTRFRHLQTL   27 (42)
T ss_dssp             SSCCBCCSSSCCCBSSHHHH
T ss_pred             CCCCEECCCCCCEECCHHHH
T ss_conf             98897589889840788999


No 265
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida}
Probab=28.47  E-value=22  Score=15.79  Aligned_cols=31  Identities=10%  Similarity=0.192  Sum_probs=21.7

Q ss_pred             CCCCCCCCCEEE--ECCCCCCCCCCCCCEECHH
Q ss_conf             311788887442--1488872277898715323
Q gi|254780459|r    9 KRTCPDTGKRFY--DLNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus         9 KR~C~~Cg~KFY--Dlnk~PiiCP~CG~e~~~~   39 (129)
                      -.+||.-|...-  -+...-|+||..|..|++.
T Consensus        39 ~~~CpH~g~~L~~G~~~~~~i~CP~Hg~~F~l~   71 (106)
T 3dqy_A           39 QDTCTHGDWALSDGYLDGDIVECTLHFGKFCVR   71 (106)
T ss_dssp             ESBCSSSSCBGGGSEEETTEEECTTTCCEEETT
T ss_pred             ECCCCCCCCCCCCCCCCCCEEEECCCCCEEECC
T ss_conf             688999997666632809999988889899999


No 266
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=27.92  E-value=21  Score=15.98  Aligned_cols=24  Identities=17%  Similarity=0.336  Sum_probs=15.8

Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCEEC
Q ss_conf             1178888744214888722778987153
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~   37 (129)
                      ..|..|..-|    +.-+.||-|+.+..
T Consensus        19 ~hC~~C~~~~----~~~a~CPdC~~~Lq   42 (81)
T 2jrp_A           19 AHCETCAKDF----SLQALCPDCRQPLQ   42 (81)
T ss_dssp             EECTTTCCEE----EEEEECSSSCSCCC
T ss_pred             EECHHHHHHH----HHEEECCCCCCHHH
T ss_conf             7806766446----64664876436799


No 267
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.70  E-value=28  Score=15.15  Aligned_cols=13  Identities=0%  Similarity=0.023  Sum_probs=7.8

Q ss_pred             CCCCCCCCCEECH
Q ss_conf             7227789871532
Q gi|254780459|r   26 VIVSPYTQNSWPL   38 (129)
Q Consensus        26 PiiCP~CG~e~~~   38 (129)
                      -..||-|.+.|..
T Consensus        58 ~~~Cp~Cr~~y~~   70 (80)
T 2d8s_A           58 TRCCELCKYEFIM   70 (80)
T ss_dssp             CSBCSSSCCBCCC
T ss_pred             CCCCCCCCCEEEE
T ss_conf             9838578980476


No 268
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=27.58  E-value=24  Score=15.57  Aligned_cols=24  Identities=17%  Similarity=0.239  Sum_probs=19.0

Q ss_pred             CCCCCCCEE---EECCCCCCCCCCCCC
Q ss_conf             178888744---214888722778987
Q gi|254780459|r   11 TCPDTGKRF---YDLNKQVIVSPYTQN   34 (129)
Q Consensus        11 ~C~~Cg~KF---YDlnk~PiiCP~CG~   34 (129)
                      .||.||..|   |-||.--=.||.|..
T Consensus       130 ~~~~~g~~~~~~FSfNsP~GaC~~C~G  156 (842)
T 2vf7_A          130 YPPGQGIVYAEGFSPNTPEGACPECHG  156 (842)
T ss_dssp             CCTTCCCCCGGGGCTTSTTTBCTTTTS
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             989988560577688963012853688


No 269
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=27.57  E-value=31  Score=14.87  Aligned_cols=24  Identities=13%  Similarity=0.088  Sum_probs=18.0

Q ss_pred             CCCCCCCCCEEEECCCCCCCCCCCCCEE
Q ss_conf             3117888874421488872277898715
Q gi|254780459|r    9 KRTCPDTGKRFYDLNKQVIVSPYTQNSW   36 (129)
Q Consensus         9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e~   36 (129)
                      .++|..|...    ...++.||+|+..+
T Consensus        49 ~~~C~~C~~~----~~~~~~C~~C~~~~   72 (490)
T 3n71_A           49 NFVCHTCFKR----QEKLHRCGQCKFAH   72 (490)
T ss_dssp             TTBCTTTCCB----CSCCEECTTTSCCE
T ss_pred             CCHHHHHCCC----CCCCCCCCCCCCEE
T ss_conf             7610121576----67775699998153


No 270
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4
Probab=27.49  E-value=12  Score=17.44  Aligned_cols=11  Identities=9%  Similarity=0.202  Sum_probs=4.6

Q ss_pred             CCCCCCCCCEE
Q ss_conf             72277898715
Q gi|254780459|r   26 VIVSPYTQNSW   36 (129)
Q Consensus        26 PiiCP~CG~e~   36 (129)
                      +..|+.|+..|
T Consensus        93 ~~~C~~C~~~f  103 (127)
T 1zu1_A           93 SKCCPVCNMTF  103 (127)
T ss_dssp             TTEETTTTEEC
T ss_pred             CCCCCCCCCCC
T ss_conf             96778438497


No 271
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.30  E-value=17  Score=16.52  Aligned_cols=27  Identities=11%  Similarity=0.203  Sum_probs=17.4

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCEECHH
Q ss_conf             17888874421488872277898715323
Q gi|254780459|r   11 TCPDTGKRFYDLNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus        11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~   39 (129)
                      .|.-.+-|-  +---|++|+.|+..|=..
T Consensus        14 rCs~~~C~~--~~~lp~~C~~C~~~FC~~   40 (63)
T 1x4v_A           14 KCERAGCRQ--REMMKLTCERCSRNFCIK   40 (63)
T ss_dssp             CCCSTTCCC--CCSSCCBCSSSCCBCCHH
T ss_pred             CCCCCCCCC--CCCEEEECCCCCCCHHHC
T ss_conf             489877888--642355754438602251


No 272
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A
Probab=27.03  E-value=24  Score=15.54  Aligned_cols=31  Identities=13%  Similarity=0.090  Sum_probs=19.4

Q ss_pred             CCCCCCCCEE--EECCCCCCCCCCCCCEECHHH
Q ss_conf             1178888744--214888722778987153233
Q gi|254780459|r   10 RTCPDTGKRF--YDLNKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus        10 R~C~~Cg~KF--YDlnk~PiiCP~CG~e~~~~~   40 (129)
                      ..||--|...  -.+...-|+||+.|..|++..
T Consensus        42 ~~CpH~g~~L~~g~~~~~~i~Cp~H~~~f~l~t   74 (111)
T 1vm9_A           42 AMCPHQEILLSEGSYEGGVITCRAHLWTFNDGT   74 (111)
T ss_dssp             SBCSSSSCBGGGSEEETTEEECTTTCCEEETTT
T ss_pred             CCCCCCCCEEEEEEECCCEEEECCCCCEEECCC
T ss_conf             628988957255306699999489998999999


No 273
>3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis, cytoplasm, polymorphism, zinc, zinc-FIN metal binding protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D
Probab=27.02  E-value=23  Score=15.69  Aligned_cols=19  Identities=11%  Similarity=-0.024  Sum_probs=14.3

Q ss_pred             EEECCC-CCCCCCCCCCEEC
Q ss_conf             421488-8722778987153
Q gi|254780459|r   19 FYDLNK-QVIVSPYTQNSWP   37 (129)
Q Consensus        19 FYDlnk-~PiiCP~CG~e~~   37 (129)
                      ||=.++ +-+.|.+||.++.
T Consensus        38 Fyytg~~D~v~Cf~C~~~l~   57 (85)
T 3m1d_A           38 FYYTGVNDKVKCFCCGLMLD   57 (85)
T ss_dssp             EEECSSTTCEEETTTCCEEC
T ss_pred             CEECCCCCEEEECCCCCEEC
T ss_conf             88879999889596988913


No 274
>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D*
Probab=27.00  E-value=24  Score=15.59  Aligned_cols=31  Identities=19%  Similarity=0.396  Sum_probs=20.9

Q ss_pred             CCCCCCCCCEE--EECCCCCCCCCCCCCEECHH
Q ss_conf             31178888744--21488872277898715323
Q gi|254780459|r    9 KRTCPDTGKRF--YDLNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus         9 KR~C~~Cg~KF--YDlnk~PiiCP~CG~e~~~~   39 (129)
                      --+||-.|+..  ..+...-|+||+.|..|.+.
T Consensus        43 ~~~CpH~g~~L~~g~~~~~~i~Cp~H~~~f~l~   75 (115)
T 2de6_D           43 EDTCTHGIASLSEGTLDGDVIECPFHGGAFNVC   75 (115)
T ss_dssp             ESBCTTSSCBGGGSEEETTEEECTTTCCEEETT
T ss_pred             ECCCCCCCCEEEECCCCCCEEECCCCCCEEECC
T ss_conf             760898886635212679999717989999999


No 275
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.92  E-value=19  Score=16.19  Aligned_cols=20  Identities=5%  Similarity=-0.122  Sum_probs=14.5

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +..|-.|+.||..|.-...+
T Consensus         9 gekp~~C~~Cgk~F~~~~~L   28 (46)
T 2eoh_A            9 GKKPYECKECRKTFIQIGHL   28 (46)
T ss_dssp             CSCSCCCSSSCCCCSSHHHH
T ss_pred             CCCCEECCCCCCCCCCHHHH
T ss_conf             98882899899787854765


No 276
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=26.88  E-value=27  Score=15.30  Aligned_cols=29  Identities=24%  Similarity=0.485  Sum_probs=22.6

Q ss_pred             HHHCCCC-----CCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf             2227831-----178888744214888722778987
Q gi|254780459|r    4 PELGTKR-----TCPDTGKRFYDLNKQVIVSPYTQN   34 (129)
Q Consensus         4 ~elG~KR-----~C~~Cg~KFYDlnk~PiiCP~CG~   34 (129)
                      +.+|+.+     .|--||.+=|-+.|.  .|-+||.
T Consensus         6 ~SfGKr~~KtH~lCrRCG~~syH~qK~--~CasCGy   39 (97)
T 2zkr_2            6 SSFGKRRNKTHTLCRRCGSKAYHLQKS--TCGKCGY   39 (97)
T ss_dssp             SSCSCSCCCCEECCTTTCSSCEETTSC--CBTTTCT
T ss_pred             CCCCCCCCCCCCHHCCCCCHHHHCCCC--CCCCCCC
T ss_conf             676776787645102769624430303--0100389


No 277
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus dsm 3638} PDB: 2dcu_B*
Probab=26.74  E-value=21  Score=15.95  Aligned_cols=32  Identities=16%  Similarity=0.214  Sum_probs=20.0

Q ss_pred             CCCCCCCEEEECCCC----CCCCCCCCCEECHHHHH
Q ss_conf             178888744214888----72277898715323310
Q gi|254780459|r   11 TCPDTGKRFYDLNKQ----VIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        11 ~C~~Cg~KFYDlnk~----PiiCP~CG~e~~~~~~~   42 (129)
                      +|++|+.-=..|-|.    =+.|=.||+.-+...++
T Consensus       106 lC~~C~spdT~l~k~~r~~~l~C~aCGa~~~V~~i~  141 (148)
T 2d74_B          106 ICPVCGSPDTKIIKRDRFHFLKCEACGAETPIQHLL  141 (148)
T ss_dssp             SCSSSCCTTCCCCBSSSSBCCCCSSSCCCCCCCC--
T ss_pred             ECCCCCCCCCEEEEECCEEEEEECCCCCCCCHHHHH
T ss_conf             999999974099995880999805689998507888


No 278
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.68  E-value=21  Score=15.88  Aligned_cols=20  Identities=10%  Similarity=0.052  Sum_probs=14.3

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +..|-.|+.||..|.-...+
T Consensus         9 ~Ekpy~C~~Cgk~F~~~~~L   28 (44)
T 2emb_A            9 TRKRYECSKCQATFNLRKHL   28 (44)
T ss_dssp             CCSSEECTTTCCEESCHHHH
T ss_pred             CCCCEECCCCCCCCCCHHHH
T ss_conf             98696789998955877999


No 279
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=26.17  E-value=13  Score=17.18  Aligned_cols=10  Identities=30%  Similarity=0.341  Sum_probs=4.8

Q ss_pred             CCCCCCCCCC
Q ss_conf             8722778987
Q gi|254780459|r   25 QVIVSPYTQN   34 (129)
Q Consensus        25 ~PiiCP~CG~   34 (129)
                      .-+.||+||.
T Consensus        14 ~~~~Cp~C~~   23 (57)
T 1qyp_A           14 TKITCPKCGN   23 (57)
T ss_dssp             EECCCTTTCC
T ss_pred             CCCCCCCCCC
T ss_conf             3389989969


No 280
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.09  E-value=9.5  Score=18.02  Aligned_cols=33  Identities=6%  Similarity=0.159  Sum_probs=22.0

Q ss_pred             CHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEE
Q ss_conf             5222783117888874421488872277898715
Q gi|254780459|r    3 KPELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSW   36 (129)
Q Consensus         3 K~elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~   36 (129)
                      ++.-=.|..|..|.+|--=+.-.+..| .||..|
T Consensus         9 ~~~~~~~~RC~~C~KKl~L~~~~~~~C-rCg~~F   41 (67)
T 1x4w_A            9 RSKQKSRRRCFQCQTKLELVQQELGSC-RCGYVF   41 (67)
T ss_dssp             CCSCSCTTBCSSSCCBCCHHHHHHHCC-SSSCCC
T ss_pred             CCCCCCCCCCHHHCCCCCCCCCEECCC-CCCCCH
T ss_conf             667766874555478711355300445-577602


No 281
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.85  E-value=21  Score=15.97  Aligned_cols=18  Identities=0%  Similarity=-0.106  Sum_probs=13.2

Q ss_pred             CCCCCCCCCCCCEECHHH
Q ss_conf             888722778987153233
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~   40 (129)
                      +..|-.|+.||..|.-..
T Consensus         9 geKpy~C~~C~k~F~~~~   26 (46)
T 2emz_A            9 GERPFKCNECGKGFGRRS   26 (46)
T ss_dssp             CCCSCCCSSSCCCCSSHH
T ss_pred             CCCCEECCCCCCCCCCHH
T ss_conf             988968998898848889


No 282
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=25.59  E-value=19  Score=16.13  Aligned_cols=18  Identities=6%  Similarity=0.054  Sum_probs=11.6

Q ss_pred             CCCCC--CCCCCEECHHHHH
Q ss_conf             87227--7898715323310
Q gi|254780459|r   25 QVIVS--PYTQNSWPLAYFE   42 (129)
Q Consensus        25 ~PiiC--P~CG~e~~~~~~~   42 (129)
                      .|-+|  |.||..|.-..-+
T Consensus         1 kpf~C~~~~C~k~F~~~~~L   20 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDEL   20 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHH
T ss_pred             CCCCCCCCCCCCCCCCHHHH
T ss_conf             91899099889463975776


No 283
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=25.48  E-value=34  Score=14.64  Aligned_cols=28  Identities=11%  Similarity=0.071  Sum_probs=15.8

Q ss_pred             CCCCC--CCCEE-EECCCC-----CCCCCCCCCEEC
Q ss_conf             11788--88744-214888-----722778987153
Q gi|254780459|r   10 RTCPD--TGKRF-YDLNKQ-----VIVSPYTQNSWP   37 (129)
Q Consensus        10 R~C~~--Cg~KF-YDlnk~-----PiiCP~CG~e~~   37 (129)
                      |-||+  |+.-+ |+=+..     +.+|++||..|=
T Consensus        26 ~wCP~p~C~~~i~~~~~~~~~~c~~~~c~~C~~~fC   61 (80)
T 2jmo_A           26 VLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFC   61 (80)
T ss_dssp             CCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEE
T ss_pred             EECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEC
T ss_conf             689799997427878987754557861399959667


No 284
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.43  E-value=23  Score=15.68  Aligned_cols=20  Identities=5%  Similarity=-0.122  Sum_probs=14.2

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +..|-.|+.||..|.-...+
T Consensus         9 GeKpy~C~~Cgk~F~~~~~L   28 (44)
T 2eof_A            9 GEKPYECNECQKAFNTKSNL   28 (44)
T ss_dssp             CCCSEECTTTCCEESCHHHH
T ss_pred             CCCCEECCCCCCEECCHHHH
T ss_conf             99794789869982877887


No 285
>3ofq_1 50S ribosomal protein L33; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 3fik_1 2wwq_4 3ofr_1* 3i1n_1 1vs8_1 1vs6_1 1vt2_1 3i1p_1 3i1r_1 3i1t_1 3i20_1 3i22_1 3kcr_1 3orb_1* 2gya_1 2gyc_1 2qam_1* 1p85_1 1p86_1 2awb_1 ...
Probab=25.43  E-value=22  Score=15.86  Aligned_cols=28  Identities=18%  Similarity=0.249  Sum_probs=20.0

Q ss_pred             CCCCCCCCCCEEEECCCCCC----------CCCCCCCE
Q ss_conf             83117888874421488872----------27789871
Q gi|254780459|r    8 TKRTCPDTGKRFYDLNKQVI----------VSPYTQNS   35 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDlnk~Pi----------iCP~CG~e   35 (129)
                      +|-+|..|+-.||=..|.+-          -||.|+.-
T Consensus         6 I~L~st~~tg~~Y~t~Kn~~~~~~rLel~Kycp~~~kH   43 (50)
T 3ofq_1            6 IKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQH   43 (50)
T ss_dssp             ECCBCSSSCCCBCCEEECTTTCCSCCCCCEECTTTSSE
T ss_pred             EEEEEECCCCCEEEECCCCCCCCCCEEEECCCCCCCCE
T ss_conf             99998278884597658889995024797438888715


No 286
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.34  E-value=25  Score=15.45  Aligned_cols=20  Identities=10%  Similarity=-0.097  Sum_probs=14.0

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +..|-.|+.||..|.-...+
T Consensus         7 gekpy~C~~Cgk~F~~~~~L   26 (41)
T 2ept_A            7 GQRVYECQECGKSFRQKGSL   26 (41)
T ss_dssp             CCCCEECSSSCCEESSHHHH
T ss_pred             CCCCEECCCCCCEECCHHHH
T ss_conf             99798689869864867899


No 287
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=25.10  E-value=25  Score=15.47  Aligned_cols=18  Identities=6%  Similarity=-0.058  Sum_probs=13.1

Q ss_pred             CCCCCCCCCCCCEECHHH
Q ss_conf             888722778987153233
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~   40 (129)
                      +..|-.|..||..|.-..
T Consensus         8 GeKPy~C~~CgK~F~~~~   25 (42)
T 2epc_A            8 GETPYLCGQCGKSFTQRG   25 (42)
T ss_dssp             SSCCEECSSSCCEESSHH
T ss_pred             CCCCEECCCCCCCCCCHH
T ss_conf             988988899998467678


No 288
>2vm5_A Baculoviral IAP repeat-containing protein 1; baculoviral inhibitor of apoptosis repeat-containing 1, BIR2, BIRC1, apoptosis, polymorphism; 1.80A {Homo sapiens}
Probab=25.08  E-value=26  Score=15.34  Aligned_cols=19  Identities=5%  Similarity=-0.074  Sum_probs=13.9

Q ss_pred             EEECC-CCCCCCCCCCCEEC
Q ss_conf             42148-88722778987153
Q gi|254780459|r   19 FYDLN-KQVIVSPYTQNSWP   37 (129)
Q Consensus        19 FYDln-k~PiiCP~CG~e~~   37 (129)
                      ||=.+ .+-+.|.+||.++.
T Consensus        48 Fyytg~~D~v~Cf~C~~~l~   67 (106)
T 2vm5_A           48 FVFTGKQDTVQCFSCGGCLG   67 (106)
T ss_dssp             EEECSSTTCEEETTTCCEEE
T ss_pred             CEECCCCCCEEECCCCCEEC
T ss_conf             47889997169531698914


No 289
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.07  E-value=34  Score=14.63  Aligned_cols=32  Identities=6%  Similarity=-0.026  Sum_probs=21.1

Q ss_pred             HCCCCCCCCCCCEEEECCCCCCCCCCCCCEECHHHH
Q ss_conf             278311788887442148887227789871532331
Q gi|254780459|r    6 LGTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus         6 lG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~   41 (129)
                      +-...+|+=|-..|    ++|++.+.||+.|--.=+
T Consensus        12 ~~~~~~C~IC~~~~----~~~~~~~~C~H~fC~~Ci   43 (72)
T 2djb_A           12 LTPYILCSICKGYL----IDATTITECLHTFCKSCI   43 (72)
T ss_dssp             CCGGGSCTTTSSCC----SSCEECSSSCCEECHHHH
T ss_pred             CCCCCCCCCCCCHH----CCCCEECCCCCCCCHHHH
T ss_conf             89998981169440----197188989983698999


No 290
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=24.95  E-value=8.8  Score=18.23  Aligned_cols=23  Identities=13%  Similarity=0.212  Sum_probs=13.4

Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCEEC
Q ss_conf             1178888744214888722778987153
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~   37 (129)
                      -.||-|-.-|    +.|++-| ||+.|=
T Consensus        22 l~C~IC~~~~----~~p~~~~-CgH~FC   44 (112)
T 1jm7_A           22 LECPICLELI----KEPVSTK-CDHIFC   44 (112)
T ss_dssp             TSCSSSCCCC----SSCCBCT-TSCCCC
T ss_pred             CCCCCCCCCC----CCEEECC-CCCHHH
T ss_conf             7998769203----8927847-996171


No 291
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=24.93  E-value=32  Score=14.78  Aligned_cols=24  Identities=8%  Similarity=0.224  Sum_probs=18.2

Q ss_pred             CCCCCCCCCCCEEEECCCCCCCCCCCCCEE
Q ss_conf             783117888874421488872277898715
Q gi|254780459|r    7 GTKRTCPDTGKRFYDLNKQVIVSPYTQNSW   36 (129)
Q Consensus         7 G~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~   36 (129)
                      -.++.|..||.      +....|+.|+..+
T Consensus         7 ~~~~~C~~C~~------~~~~~Cs~C~~~~   30 (52)
T 2jw6_A            7 RKEQSCVNCGR------EAMSECTGCHKVN   30 (52)
T ss_dssp             ----CCSSSSS------SCSEECTTTCSSE
T ss_pred             CCCCCCCCCCC------CCCCCCCCCCCEE
T ss_conf             68883778996------4037489999677


No 292
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=24.80  E-value=20  Score=16.11  Aligned_cols=28  Identities=4%  Similarity=-0.161  Sum_probs=10.9

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCEECH
Q ss_conf             1788887442148887227789871532
Q gi|254780459|r   11 TCPDTGKRFYDLNKQVIVSPYTQNSWPL   38 (129)
Q Consensus        11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~   38 (129)
                      +|+=|-.-+-+-...|--|.+|+..|-.
T Consensus         8 ~C~IC~~~~~~~~~~pc~C~g~~h~~H~   35 (60)
T 1vyx_A            8 VCWICNEELGNERFRACGCTGELENVHR   35 (60)
T ss_dssp             EETTTTEECSCCCCCSCCCSSGGGSCCH
T ss_pred             CCEECCCCCCCCCEECCCCCCCCCEECH
T ss_conf             9900786278765641431797687868


No 293
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.68  E-value=25  Score=15.48  Aligned_cols=19  Identities=0%  Similarity=-0.268  Sum_probs=13.3

Q ss_pred             CCCCCCCCCCCCEECHHHH
Q ss_conf             8887227789871532331
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~   41 (129)
                      +..|-.|+.||..|.-...
T Consensus         9 gEkpy~C~~CgK~F~~~s~   27 (46)
T 2yso_A            9 REKSHQCRECGEIFFQYVS   27 (46)
T ss_dssp             CCCCEECTTTCCEESSHHH
T ss_pred             CCCCCCCCCCCCCCCCHHH
T ss_conf             9988288999897774587


No 294
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}
Probab=24.62  E-value=25  Score=15.46  Aligned_cols=17  Identities=6%  Similarity=-0.001  Sum_probs=11.4

Q ss_pred             CCCCCCCC--CCCEECHHH
Q ss_conf             88722778--987153233
Q gi|254780459|r   24 KQVIVSPY--TQNSWPLAY   40 (129)
Q Consensus        24 k~PiiCP~--CG~e~~~~~   40 (129)
                      +.|-+|++  ||..|.-..
T Consensus         6 ~k~y~C~~~~C~k~F~~~~   24 (37)
T 1va1_A            6 KKQHICHIQGCGKVYGKTS   24 (37)
T ss_dssp             CCCEECCSTTCCCEESCHH
T ss_pred             CCCCCCCCCCCCCEECCHH
T ss_conf             8887991989899759657


No 295
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=24.31  E-value=36  Score=14.50  Aligned_cols=26  Identities=19%  Similarity=0.185  Sum_probs=17.7

Q ss_pred             CCCCCCCCCEEEECCCCCCCCCCCCCEEC
Q ss_conf             31178888744214888722778987153
Q gi|254780459|r    9 KRTCPDTGKRFYDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus         9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~   37 (129)
                      ++.|..|.+|-= |- .++.| .||..|=
T Consensus        25 ~~RC~~C~kKl~-l~-~~~~C-rCg~~FC   50 (85)
T 1wff_A           25 MKHCFLCGKKTG-LA-TSFEC-RCGNNFC   50 (85)
T ss_dssp             CCBCSSSCCBCS-SS-SCEEC-TTCCEEC
T ss_pred             CCCCHHCCCEEC-CC-CCEEC-CCCCCHH
T ss_conf             884731089616-88-77563-6889843


No 296
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=24.26  E-value=35  Score=14.58  Aligned_cols=25  Identities=20%  Similarity=0.356  Sum_probs=18.5

Q ss_pred             CCCCCCCCEEEECCC----CCCCCCCCCC
Q ss_conf             117888874421488----8722778987
Q gi|254780459|r   10 RTCPDTGKRFYDLNK----QVIVSPYTQN   34 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk----~PiiCP~CG~   34 (129)
                      -+|..||.+|-|-+=    .-.||=.|-.
T Consensus         6 ~~C~eC~~~~~d~~l~~~F~~~VC~~Ck~   34 (111)
T 1d4u_A            6 VICEECGKEFMDSYLMDHFDLPTCDDCRD   34 (111)
T ss_dssp             EECTTTCCEESCSSSTTTTSCCCCTTTCS
T ss_pred             HHHHHCCCHHHHHHHHHHCCEEECHHHCC
T ss_conf             78988289221499998639004052438


No 297
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=24.21  E-value=21  Score=15.96  Aligned_cols=12  Identities=8%  Similarity=0.049  Sum_probs=8.4

Q ss_pred             CCCCCCCCCCEE
Q ss_conf             872277898715
Q gi|254780459|r   25 QVIVSPYTQNSW   36 (129)
Q Consensus        25 ~PiiCP~CG~e~   36 (129)
                      ....||.||+.+
T Consensus       526 pd~~cp~c~~~~  537 (1041)
T 3f2b_A          526 PDKNCPRCGTKY  537 (1041)
T ss_dssp             CCCBCTTTCCBC
T ss_pred             CCCCCCHHHHHH
T ss_conf             654452110133


No 298
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.14  E-value=27  Score=15.29  Aligned_cols=20  Identities=0%  Similarity=0.008  Sum_probs=14.2

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +..|-.|+.||..|.-...+
T Consensus         9 geKpy~C~~Cgk~F~~~s~L   28 (44)
T 2yu5_A            9 GENPFKCSKCDRVFTQRNYL   28 (44)
T ss_dssp             CCCSEECSSSSCEESSSHHH
T ss_pred             CCCCEECCCCCCCCCCHHHH
T ss_conf             98694689989960866899


No 299
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.90  E-value=27  Score=15.30  Aligned_cols=20  Identities=0%  Similarity=0.069  Sum_probs=14.3

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +..|-.|+.||..|.-...+
T Consensus         7 geKpy~C~~Cgk~F~~~~~L   26 (44)
T 2emx_A            7 GEKPFGCSCCEKAFSSKSYL   26 (44)
T ss_dssp             SCCCEECSSSSCEESSHHHH
T ss_pred             CCCCEECCCCCCEECCHHHH
T ss_conf             99897899989873877899


No 300
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=23.81  E-value=13  Score=17.10  Aligned_cols=25  Identities=16%  Similarity=0.258  Sum_probs=14.8

Q ss_pred             CCCCCCCCCEE----------EE---CCCCCCCCCCCC
Q ss_conf             31178888744----------21---488872277898
Q gi|254780459|r    9 KRTCPDTGKRF----------YD---LNKQVIVSPYTQ   33 (129)
Q Consensus         9 KR~C~~Cg~KF----------YD---lnk~PiiCP~CG   33 (129)
                      ++.|+.||+.|          +-   |.+.+++|--|=
T Consensus         4 ~~kC~GCG~~lQ~~d~~~~GYvp~~~~~~~~~~C~RC~   41 (368)
T 3h2y_A            4 TIKCIGCGVEIQTEDKNEVGYAPASSLEKEQVICQRCF   41 (368)
T ss_dssp             --------------------------------------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEHHHH
T ss_conf             88858987300777899898886789566777862241


No 301
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.61  E-value=34  Score=14.68  Aligned_cols=29  Identities=3%  Similarity=-0.038  Sum_probs=20.8

Q ss_pred             CCCCCCCCEEEECCCCC---CCCCCCCCEECH
Q ss_conf             11788887442148887---227789871532
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQV---IVSPYTQNSWPL   38 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~P---iiCP~CG~e~~~   38 (129)
                      |+=..-|..+|.++..+   ++|=.||..+..
T Consensus        74 ~i~~~~~~~~y~~~~~~h~h~iC~~Cg~i~~~  105 (145)
T 2fe3_A           74 ELTYGDASSRFDFVTSDHYHAICENCGKIVDF  105 (145)
T ss_dssp             EECCTTSCCEEEECCCCEEEEEETTTCCEEEC
T ss_pred             EEEECCCCEEEECCCCCCEEEEECCCCCEEEE
T ss_conf             99718981799537885207998899988983


No 302
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=23.44  E-value=30  Score=14.94  Aligned_cols=10  Identities=20%  Similarity=0.594  Sum_probs=4.4

Q ss_pred             HCCCCCCCCC
Q ss_conf             2783117888
Q gi|254780459|r    6 LGTKRTCPDT   15 (129)
Q Consensus         6 lG~KR~C~~C   15 (129)
                      .|..++|+.|
T Consensus        51 ~~~~~~C~~C   60 (248)
T 1nlt_A           51 KGAVKKCTSC   60 (248)
T ss_dssp             TTTCCCCTTS
T ss_pred             CCCCCCCCCC
T ss_conf             9988737887


No 303
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=23.10  E-value=35  Score=14.58  Aligned_cols=29  Identities=10%  Similarity=0.098  Sum_probs=19.7

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCEECHHHHHCC
Q ss_conf             1788887442148887227789871532331012
Q gi|254780459|r   11 TCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEAP   44 (129)
Q Consensus        11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~~   44 (129)
                      +||-|.    +|-++|++.| ||..|.-..+.+-
T Consensus       210 ~c~Is~----elm~dPv~~~-~g~tyer~~i~~~  238 (281)
T 2c2l_A          210 CGKISF----ELMREPCITP-SGITYDRKDIEEH  238 (281)
T ss_dssp             BCTTTC----SBCSSEEECS-SCCEEETTHHHHH
T ss_pred             CCCHHH----HCCCCCEECC-CCCHHHHHHHHHH
T ss_conf             251542----0056983468-8652649999999


No 304
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.06  E-value=28  Score=15.14  Aligned_cols=20  Identities=0%  Similarity=-0.167  Sum_probs=14.0

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +..|-.|+.||..|.-...+
T Consensus         8 GeKPy~C~~Cgk~F~~~~~L   27 (42)
T 2en2_A            8 GEKPYKCETCGARFVQVAHL   27 (42)
T ss_dssp             SSCSEECTTTCCEESSHHHH
T ss_pred             CCCCEECCCCCCCCCCHHHH
T ss_conf             97897889869983888899


No 305
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.92  E-value=28  Score=15.15  Aligned_cols=20  Identities=0%  Similarity=-0.238  Sum_probs=14.1

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +-.|-.|+.||..|.-...+
T Consensus         6 ~eKPykC~~C~k~F~~~~~L   25 (36)
T 2elq_A            6 SGKPFKCSLCEYATRSKSNL   25 (36)
T ss_dssp             CCCSEECSSSSCEESCHHHH
T ss_pred             CCCCEECCCCCCCCCCHHHH
T ss_conf             99898689987604887999


No 306
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.75  E-value=35  Score=14.54  Aligned_cols=32  Identities=9%  Similarity=0.087  Sum_probs=16.4

Q ss_pred             HCCCCCCCCCCCEEEECCCCCCCCCCCCCEECHH
Q ss_conf             2783117888874421488872277898715323
Q gi|254780459|r    6 LGTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus         6 lG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~   39 (129)
                      +...-+|+=|--.|-  ...+++...||+.|-..
T Consensus        12 ~~~~~~C~IC~~~~~--~~~~~~~~~C~H~fh~~   43 (74)
T 2ep4_A           12 LNLHELCAVCLEDFK--PRDELGICPCKHAFHRK   43 (74)
T ss_dssp             CCCSCBCSSSCCBCC--SSSCEEEETTTEEEEHH
T ss_pred             CCCCCEEEEECCCCC--CCCEEEECCCCCCCCHH
T ss_conf             899999460297764--79848972699970699


No 307
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=22.70  E-value=38  Score=14.37  Aligned_cols=31  Identities=10%  Similarity=0.178  Sum_probs=20.3

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCEECHHHHH
Q ss_conf             17888874421488872277898715323310
Q gi|254780459|r   11 TCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~   42 (129)
                      .|+=|=..|.+ +...+.+|.||..|-..=+.
T Consensus         7 ~C~IC~~~~~~-~~~~~~~~~C~H~fh~~Ci~   37 (55)
T 1iym_A            7 ECAVCLAELED-GEEARFLPRCGHGFHAECVD   37 (55)
T ss_dssp             CCTTTCCCCCT-TSCCEECSSSCCEECTTHHH
T ss_pred             CCEEECCEEEC-CCEEEEECCCCCEECHHHHH
T ss_conf             98679948457-98799918989885799999


No 308
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus HB8}
Probab=22.67  E-value=15  Score=16.88  Aligned_cols=13  Identities=38%  Similarity=0.808  Sum_probs=7.1

Q ss_pred             CCCCCCCEEEECCCCCC
Q ss_conf             17888874421488872
Q gi|254780459|r   11 TCPDTGKRFYDLNKQVI   27 (129)
Q Consensus        11 ~C~~Cg~KFYDlnk~Pi   27 (129)
                      +||+||+.    ||-|.
T Consensus         4 ~~~~~~~~----n~~p~   16 (140)
T 1v98_A            4 TCPKCGAK----NRLGT   16 (140)
T ss_dssp             -----------------
T ss_pred             ECCCCCCC----CCCCC
T ss_conf             89787766----78999


No 309
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIRON center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=22.63  E-value=24  Score=15.61  Aligned_cols=10  Identities=10%  Similarity=0.092  Sum_probs=8.5

Q ss_pred             CCCCCCCEEC
Q ss_conf             2778987153
Q gi|254780459|r   28 VSPYTQNSWP   37 (129)
Q Consensus        28 iCP~CG~e~~   37 (129)
                      +||.||..+.
T Consensus       173 ~C~~CG~i~~  182 (202)
T 1yuz_A          173 LCPICGYIHK  182 (202)
T ss_dssp             ECSSSCCEEE
T ss_pred             ECCCCCCEEC
T ss_conf             8899998524


No 310
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.12  E-value=30  Score=14.99  Aligned_cols=20  Identities=0%  Similarity=-0.117  Sum_probs=14.3

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +..|-.|+.||..|.-...+
T Consensus         9 geKpy~C~~Cgk~F~~~s~L   28 (44)
T 2epv_A            9 GEKPYECNECGKAFIWKSLL   28 (44)
T ss_dssp             CCCSEECSSSCCEESSHHHH
T ss_pred             CCCCEECCCCCCCCCCHHHH
T ss_conf             99896789989881877787


No 311
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, cytoplasm, GTP-binding; 3.50A {Schizosaccharomyces pombe}
Probab=21.96  E-value=17  Score=16.42  Aligned_cols=29  Identities=7%  Similarity=0.012  Sum_probs=19.5

Q ss_pred             CCCCCCCCCEEEECCC---------CCCCCCCCCCEEC
Q ss_conf             3117888874421488---------8722778987153
Q gi|254780459|r    9 KRTCPDTGKRFYDLNK---------QVIVSPYTQNSWP   37 (129)
Q Consensus         9 KR~C~~Cg~KFYDlnk---------~PiiCP~CG~e~~   37 (129)
                      ...|++|+..+--+.+         ....||.||..+.
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~le  374 (441)
T 3e20_C          337 EFKNSEGNPVITYMTKEQEEKDSTNSFLLDKDTGAEME  374 (441)
T ss_dssp             ----------CCEECSCTTTCCC---------------
T ss_pred             EEECCCCCEEEEEECCCHHCCCCCCCCCCCCCCCCCHH
T ss_conf             98548865156641430102444443346743464301


No 312
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=21.96  E-value=23  Score=15.67  Aligned_cols=21  Identities=5%  Similarity=0.101  Sum_probs=14.9

Q ss_pred             CCCCCCCCCCCCEECHHHHHC
Q ss_conf             888722778987153233101
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFEA   43 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~~   43 (129)
                      +..|-.|+.||..|.-...++
T Consensus         9 ~eKpy~C~~CgK~F~~~s~L~   29 (48)
T 2epr_A            9 TRKQVACEICGKIFRDVYHLN   29 (48)
T ss_dssp             CCCSEEETTTTEEESSHHHHH
T ss_pred             CCCCCCCCCCCCCCCCHHHHH
T ss_conf             996828898997748768989


No 313
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=21.88  E-value=31  Score=14.85  Aligned_cols=19  Identities=5%  Similarity=-0.099  Sum_probs=14.2

Q ss_pred             CCCCCCCCCCCCEECHHHH
Q ss_conf             8887227789871532331
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~   41 (129)
                      +..|-.|..||..|.-...
T Consensus         9 geKpy~C~~Cgk~F~~~s~   27 (46)
T 2el6_A            9 GVNPYKCSQCEKSFSGKLR   27 (46)
T ss_dssp             CCCSEECSSSSCEESSHHH
T ss_pred             CCCCEECCCCCCCCCCHHH
T ss_conf             9979789998998588889


No 314
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=21.74  E-value=31  Score=14.88  Aligned_cols=20  Identities=0%  Similarity=-0.197  Sum_probs=14.1

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +..|-.|..||..|.-...+
T Consensus         7 GEkpy~C~~Cgk~F~~~s~L   26 (42)
T 2el5_A            7 GENPYECSECGKAFNRKDQL   26 (42)
T ss_dssp             SCCSEECSSSCCEESSHHHH
T ss_pred             CCCCEECCCCCCCCCCHHHH
T ss_conf             99798799879980775899


No 315
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.51  E-value=28  Score=15.20  Aligned_cols=20  Identities=5%  Similarity=-0.112  Sum_probs=14.3

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +..|-.|..||..|.-...+
T Consensus         9 geKpy~C~~CgK~F~~~s~L   28 (44)
T 2eou_A            9 AKTTSECQECGKIFRHSSLL   28 (44)
T ss_dssp             SSCCCCCTTTCCCCSSHHHH
T ss_pred             CCCCCCCCCCCCEECCCHHH
T ss_conf             99598289878713842405


No 316
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=21.49  E-value=25  Score=15.43  Aligned_cols=16  Identities=0%  Similarity=-0.164  Sum_probs=10.8

Q ss_pred             CCCCCCCCCCCEECHH
Q ss_conf             8872277898715323
Q gi|254780459|r   24 KQVIVSPYTQNSWPLA   39 (129)
Q Consensus        24 k~PiiCP~CG~e~~~~   39 (129)
                      +.|--|+.||.-|...
T Consensus        11 gp~~eC~~C~vkYs~~   26 (55)
T 2yrk_A           11 GTKPECTLCGVKYSAR   26 (55)
T ss_dssp             CCCSCCTTTTCCCCSS
T ss_pred             CCCCCCCCCCEEECCC
T ss_conf             9945377446130564


No 317
>1dj7_A Ferredoxin thioredoxin reductase: catalytic chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding motif, electron transport; 1.60A {Synechocystis SP} SCOP: g.36.1.1 PDB: 2pu9_A 2pvo_A 2puo_A 2puk_A 2pvg_A 2pvd_A
Probab=21.49  E-value=11  Score=17.60  Aligned_cols=35  Identities=23%  Similarity=0.215  Sum_probs=22.7

Q ss_pred             HHHCCCCCCCCCCCEEEECCCCC-----CCCC----------CCCCEECHHHHH
Q ss_conf             22278311788887442148887-----2277----------898715323310
Q gi|254780459|r    4 PELGTKRTCPDTGKRFYDLNKQV-----IVSP----------YTQNSWPLAYFE   42 (129)
Q Consensus         4 ~elG~KR~C~~Cg~KFYDlnk~P-----iiCP----------~CG~e~~~~~~~   42 (129)
                      -.+| ||-|| |  |||.=++.-     ||||          .||--+.++.-.
T Consensus        48 ~~yG-~~~CP-C--r~~~g~~eedk~~~~iCPC~~~~e~g~ChC~LF~t~e~~~   97 (117)
T 1dj7_A           48 EELG-SPLCP-C--RHYEDKEAEVKNTFWNCPCVPMRERKECHCMLFLTPDNDF   97 (117)
T ss_dssp             HHHS-SCBCS-S--SCCSCHHHHHHHCTTBSSCHHHHHHCCCTTSSSBCTTSTT
T ss_pred             HHCC-CCCCC-C--CCCCCCHHHHHCCCEECCCCCHHHCCEEEEEEEECCCCCC
T ss_conf             9809-97798-7--3778868887447732489693033825576564666666


No 318
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.25  E-value=29  Score=15.10  Aligned_cols=20  Identities=5%  Similarity=-0.016  Sum_probs=14.1

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +..|-.|+.||..|.-...+
T Consensus         9 geKpy~C~~Cgk~F~~~s~L   28 (44)
T 2en7_A            9 GMKPYVCNECGKAFRSKSYL   28 (44)
T ss_dssp             SSSSSCCTTTCCCCSSHHHH
T ss_pred             CCCCCCCCCCCCCCCCHHHH
T ss_conf             99881889998997877898


No 319
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A
Probab=21.24  E-value=34  Score=14.67  Aligned_cols=31  Identities=16%  Similarity=0.314  Sum_probs=23.2

Q ss_pred             CCCCCCCCEEEEC---CCCCCCCCCCCCEECHHH
Q ss_conf             1178888744214---888722778987153233
Q gi|254780459|r   10 RTCPDTGKRFYDL---NKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus        10 R~C~~Cg~KFYDl---nk~PiiCP~CG~e~~~~~   40 (129)
                      -+|+-=|++...-   |..-++|||.|=.|...=
T Consensus        78 N~C~HRG~~l~~~~~g~~~~~~CpYHgW~y~~dG  111 (454)
T 2gbw_A           78 NSCSHRGNQICHADSGNAKAFVCNYHGWVFGQDG  111 (454)
T ss_dssp             SSCTTTCCCSCCCSEEECSEEECTTTCCEEETTS
T ss_pred             ECCCCCCCEEEECCCCCCCEEECCCCCEEECCCC
T ss_conf             3388899883407888605076488874986999


No 320
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.12  E-value=33  Score=14.73  Aligned_cols=20  Identities=0%  Similarity=-0.197  Sum_probs=13.8

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +..|-.|..||..|.-...+
T Consensus         9 GeKPy~C~~Cgk~F~~~s~L   28 (46)
T 2em4_A            9 GQRPYECIECGKAFKTKSSL   28 (46)
T ss_dssp             CSSSEECSSSCCEESSHHHH
T ss_pred             CCCCEECCCCCCCCCCHHHH
T ss_conf             99795789888874866787


No 321
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.09  E-value=33  Score=14.75  Aligned_cols=20  Identities=5%  Similarity=-0.101  Sum_probs=14.6

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +..|-.|..||..|.-...+
T Consensus         6 geKPykC~~C~k~F~~~~~L   25 (36)
T 2elt_A            6 SGKPYKCPQCSYASAIKANL   25 (36)
T ss_dssp             CCCSEECSSSSCEESSHHHH
T ss_pred             CCCCEECCCCCCCCCCHHHH
T ss_conf             99398689998871988999


No 322
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=21.03  E-value=13  Score=17.20  Aligned_cols=32  Identities=22%  Similarity=0.365  Sum_probs=14.8

Q ss_pred             CCCCCCCCCCCEEEEC--CCCCCCCCCCCCEECH
Q ss_conf             7831178888744214--8887227789871532
Q gi|254780459|r    7 GTKRTCPDTGKRFYDL--NKQVIVSPYTQNSWPL   38 (129)
Q Consensus         7 G~KR~C~~Cg~KFYDl--nk~PiiCP~CG~e~~~   38 (129)
                      |.--.|+=|--.|.+-  ++..++.-.||..|-.
T Consensus         1 g~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~Fc~   34 (64)
T 2xeu_A            1 GAMVSCPICMDGYSEIVQNGRLIVSTECGHVFCS   34 (64)
T ss_dssp             CCCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEH
T ss_pred             CCCCCCCCCCHHHHCCCCCCCCEEEECCCCEECH
T ss_conf             9965991189605254545777597258997308


No 323
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=20.64  E-value=35  Score=14.60  Aligned_cols=20  Identities=5%  Similarity=-0.079  Sum_probs=13.5

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +..|-.|..||..|.-...+
T Consensus         9 GeKpy~C~~CgK~F~~~s~L   28 (46)
T 2el4_A            9 GVKPYGCSQCAKTFSLKSQL   28 (46)
T ss_dssp             CCCSEECSSSSCEESSHHHH
T ss_pred             CCCCEECCCCCCEECCHHHH
T ss_conf             98897899829980864676


No 324
>2qra_D XIAP, baculoviral IAP repeat-containing protein 4, inhibitor; apoptosis, signaling protein, zinc binding; 2.50A {Homo sapiens}
Probab=20.58  E-value=36  Score=14.46  Aligned_cols=20  Identities=5%  Similarity=-0.067  Sum_probs=13.8

Q ss_pred             EEEECC-CCCCCCCCCCCEEC
Q ss_conf             442148-88722778987153
Q gi|254780459|r   18 RFYDLN-KQVIVSPYTQNSWP   37 (129)
Q Consensus        18 KFYDln-k~PiiCP~CG~e~~   37 (129)
                      =||=.+ .+-+.|.+||.++.
T Consensus        63 GFYYtG~~D~V~Cf~C~~~l~   83 (111)
T 2qra_D           63 GFLYTGEGDTVRCFSCHAAVD   83 (111)
T ss_dssp             TEEECSSTTCEEETTTCCEEC
T ss_pred             CEEEECCCCEEEECCCCCEEC
T ss_conf             939818999789576688945


No 325
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckstrin homology domain, C1 domain, acetylation; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=20.52  E-value=35  Score=14.60  Aligned_cols=12  Identities=8%  Similarity=0.199  Sum_probs=5.4

Q ss_pred             CCCCCCCCEEEE
Q ss_conf             117888874421
Q gi|254780459|r   10 RTCPDTGKRFYD   21 (129)
Q Consensus        10 R~C~~Cg~KFYD   21 (129)
                      ..|..|++.|..
T Consensus       530 t~C~~C~~~~~~  541 (587)
T 3ky9_A          530 TSCKACQMLLRG  541 (587)
T ss_dssp             CBCTTTCSBCCS
T ss_pred             CCCCCCCCCCCC
T ss_conf             887467882047


No 326
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=20.46  E-value=30  Score=14.96  Aligned_cols=20  Identities=5%  Similarity=-0.135  Sum_probs=14.3

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      ...|-.|+.||..|.-...+
T Consensus         9 GeKpy~C~~C~k~F~~~~~L   28 (46)
T 2em0_A            9 GEKTWKCRECDMCFSQASSL   28 (46)
T ss_dssp             CCCCCCCSSSCCCCSSHHHH
T ss_pred             CCCCEECCCCCCEECCHHHH
T ss_conf             98795999989872778999


No 327
>3hl5_A Baculoviral IAP repeat-containing protein 4; BIR, apoptosis, small molecule drug discovery, structure-based drug design, cytoplasm, ligase; HET: 9JZ; 1.80A {Homo sapiens} PDB: 1nw9_A 2vsl_A
Probab=20.41  E-value=37  Score=14.43  Aligned_cols=20  Identities=15%  Similarity=0.172  Sum_probs=13.8

Q ss_pred             EEEECC-CCCCCCCCCCCEEC
Q ss_conf             442148-88722778987153
Q gi|254780459|r   18 RFYDLN-KQVIVSPYTQNSWP   37 (129)
Q Consensus        18 KFYDln-k~PiiCP~CG~e~~   37 (129)
                      =||=.+ .+.+.|.+||..+.
T Consensus        37 GFyytg~~D~v~Cf~C~~~l~   57 (95)
T 3hl5_A           37 GFYALGEGDKVKCFHCGGGLT   57 (95)
T ss_dssp             TEEECSSTTCEEETTTCCEEC
T ss_pred             CCEECCCCCEEEECCCCCCCC
T ss_conf             987879898789585688925


No 328
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=20.36  E-value=27  Score=15.25  Aligned_cols=36  Identities=14%  Similarity=0.342  Sum_probs=26.5

Q ss_pred             HHHCCCCCCCCCCCEEEECCC----------CCCCCCCCCCEECHH
Q ss_conf             222783117888874421488----------872277898715323
Q gi|254780459|r    4 PELGTKRTCPDTGKRFYDLNK----------QVIVSPYTQNSWPLA   39 (129)
Q Consensus         4 ~elG~KR~C~~Cg~KFYDlnk----------~PiiCP~CG~e~~~~   39 (129)
                      |-||.-..|..|+...|..-+          .=..|=.||..+...
T Consensus         2 p~~gg~~~C~~C~~~I~~~e~v~a~g~~~H~~CF~C~~C~~~L~~~   47 (81)
T 1a7i_A            2 PNWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDST   47 (81)
T ss_dssp             ------CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSS
T ss_pred             CCCCCCCCCCCCCCEECCCEEEEECCCEECCCCCCCCCCCCCCCCC
T ss_conf             5788886231078630675389888561152368806779998998


No 329
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.30  E-value=34  Score=14.61  Aligned_cols=20  Identities=5%  Similarity=-0.150  Sum_probs=13.6

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +..|-.|..||..|.-...+
T Consensus         9 geKpy~C~~Cgk~F~~~s~L   28 (46)
T 2emm_A            9 GERPHKCNECGKSFIQSAHL   28 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHH
T ss_pred             CCCCEECCCCCCCCCCHHHH
T ss_conf             99893899999974878999


No 330
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.29  E-value=36  Score=14.46  Aligned_cols=20  Identities=0%  Similarity=-0.194  Sum_probs=14.1

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +..|-.|+.||..|.-...+
T Consensus         9 gEkpy~C~~Cgk~F~~~~~L   28 (46)
T 2eoo_A            9 GERPYGCNECGKNFGRHSHL   28 (46)
T ss_dssp             CCCCEECSSSCCEESSHHHH
T ss_pred             CCCCEECCCCCCCCCCHHHH
T ss_conf             99797899889985878899


No 331
>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3
Probab=20.26  E-value=43  Score=14.00  Aligned_cols=32  Identities=13%  Similarity=0.145  Sum_probs=21.4

Q ss_pred             CCCCCCCCCE------EEECCCC-CCCCCCCCCEECHHH
Q ss_conf             3117888874------4214888-722778987153233
Q gi|254780459|r    9 KRTCPDTGKR------FYDLNKQ-VIVSPYTQNSWPLAY   40 (129)
Q Consensus         9 KR~C~~Cg~K------FYDlnk~-PiiCP~CG~e~~~~~   40 (129)
                      --.||-.|+-      .-+.+.. -|.||+.|..|.+..
T Consensus        43 ~n~CpH~ga~ll~~G~v~~~~~~~~i~Cp~Hg~~F~l~t   81 (130)
T 2jza_A           43 SNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYD   81 (130)
T ss_dssp             BCCCTTTSSGGGTSSEEEESSSSEEEECSSSCCEEETTT
T ss_pred             ECCCCCCCCCCCCCCEEECCCCCCEEECCCCCCEEECCC
T ss_conf             863888997202375071436962898999997886899


No 332
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.14  E-value=30  Score=14.98  Aligned_cols=18  Identities=0%  Similarity=-0.239  Sum_probs=13.2

Q ss_pred             CCCCCCCCCCCEECHHHH
Q ss_conf             887227789871532331
Q gi|254780459|r   24 KQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        24 k~PiiCP~CG~e~~~~~~   41 (129)
                      ..|-.|+.||..|.-...
T Consensus        10 EKpy~C~~Cgk~F~~~s~   27 (46)
T 2ytm_A           10 EKPYKCMECGKAFGDNSS   27 (46)
T ss_dssp             CCSSSBTTTTBCCSSHHH
T ss_pred             CCCEECCCCCCCCCCHHH
T ss_conf             989689998996487799


No 333
>1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: g.52.1.1 PDB: 3cm2_D* 3clx_D* 3cm7_C* 1f9x_A 1g3f_A 1tfq_A* 1tft_A* 3eyl_A* 3g76_A* 2jk7_A* 2opz_A 2opy_A* 1xb0_A 1xb1_A
Probab=20.05  E-value=38  Score=14.35  Aligned_cols=18  Identities=17%  Similarity=0.207  Sum_probs=12.3

Q ss_pred             EEECC-CCCCCCCCCCCEE
Q ss_conf             42148-8872277898715
Q gi|254780459|r   19 FYDLN-KQVIVSPYTQNSW   36 (129)
Q Consensus        19 FYDln-k~PiiCP~CG~e~   36 (129)
                      ||=.+ .+.+.|.+||..+
T Consensus        52 Fyytg~~D~v~Cf~C~~~l   70 (121)
T 1g73_C           52 FYALGEGDKVKCFHCGGGL   70 (121)
T ss_dssp             EEECSSTTCEEETTTCCEE
T ss_pred             CEECCCCCEEEECCCCCCC
T ss_conf             8787989856947588890


No 334
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=20.04  E-value=31  Score=14.86  Aligned_cols=19  Identities=0%  Similarity=0.188  Sum_probs=13.1

Q ss_pred             ECCCCCCCCCC--CCCEECHH
Q ss_conf             14888722778--98715323
Q gi|254780459|r   21 DLNKQVIVSPY--TQNSWPLA   39 (129)
Q Consensus        21 Dlnk~PiiCP~--CG~e~~~~   39 (129)
                      -.+..|-.|++  ||..|.-.
T Consensus        13 h~~ekp~~C~~~~C~K~F~r~   33 (47)
T 1ncs_A           13 EMPDKTFECLFPGCTKTFKRR   33 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSS
T ss_pred             CCCCCCEECCCCCCCCCCCCH
T ss_conf             478979588888999985753


Done!