Query gi|254780459|ref|YP_003064872.1| hypothetical protein CLIBASIA_01720 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 129 No_of_seqs 108 out of 275 Neff 6.5 Searched_HMMs 23785 Date Mon May 30 11:24:27 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780459.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2akl_A PHNA-like protein PA012 95.5 0.0074 3.1E-07 37.1 2.9 32 9-40 27-58 (138) 2 2jz8_A Uncharacterized protein 95.4 0.0077 3.2E-07 37.0 2.8 28 17-44 38-66 (87) 3 1pft_A TFIIB, PFTFIIBN; N-term 95.0 0.0082 3.5E-07 36.8 2.0 33 7-39 3-37 (50) 4 2f9y_B Acetyl-coenzyme A carbo 94.1 0.011 4.5E-07 36.1 0.8 32 7-38 22-55 (304) 5 2a6h_D DNA-directed RNA polyme 93.9 0.017 7E-07 34.9 1.6 31 11-43 57-87 (1524) 6 1dvp_A HRS, hepatocyte growth 93.8 0.033 1.4E-06 33.1 2.8 35 2-37 154-188 (220) 7 1lko_A Rubrerythrin all-iron(I 93.7 0.013 5.4E-07 35.6 0.7 31 4-35 150-180 (191) 8 2jvm_A Uncharacterized protein 93.5 0.027 1.1E-06 33.7 2.0 25 17-41 42-68 (80) 9 3k7a_M Transcription initiatio 93.3 0.034 1.4E-06 33.0 2.3 34 4-37 16-53 (345) 10 1dl6_A Transcription factor II 93.2 0.043 1.8E-06 32.4 2.8 39 2-40 4-44 (58) 11 2apo_B Ribosome biogenesis pro 93.2 0.036 1.5E-06 32.9 2.3 22 9-35 6-27 (60) 12 2kdx_A HYPA, hydrogenase/ureas 93.1 0.042 1.8E-06 32.4 2.5 27 9-35 73-99 (119) 13 3k1f_M Transcription initiatio 92.9 0.032 1.3E-06 33.2 1.6 32 6-37 18-53 (197) 14 2f9i_B Acetyl-coenzyme A carbo 92.6 0.03 1.2E-06 33.4 1.1 29 10-38 31-61 (285) 15 2jrr_A Uncharacterized protein 92.4 0.034 1.4E-06 33.0 1.2 22 17-38 29-52 (67) 16 2gmg_A Hypothetical protein PF 92.0 0.053 2.2E-06 31.8 1.8 27 11-37 69-95 (105) 17 1vd4_A Transcription initiatio 91.4 0.1 4.4E-06 30.0 2.8 28 11-38 16-51 (62) 18 2pzi_A Probable serine/threoni 91.4 0.077 3.2E-06 30.8 2.1 32 7-38 32-68 (681) 19 2ct7_A Ring finger protein 31; 91.3 0.1 4.4E-06 30.0 2.8 30 8-37 24-54 (86) 20 3a43_A HYPD, hydrogenase nicke 91.2 0.08 3.3E-06 30.7 2.1 27 9-35 70-116 (139) 21 3cng_A Nudix hydrolase; struct 91.1 0.074 3.1E-06 30.9 1.8 30 7-36 1-35 (189) 22 1vk6_A NADH pyrophosphatase; 1 91.0 0.13 5.6E-06 29.4 3.0 31 8-38 106-137 (269) 23 3flo_B DNA polymerase alpha ca 90.9 0.08 3.4E-06 30.7 1.9 34 8-41 21-64 (206) 24 2aus_D NOP10, ribosome biogene 90.9 0.092 3.9E-06 30.4 2.1 23 8-35 4-26 (60) 25 3bvo_A CO-chaperone protein HS 90.9 0.098 4.1E-06 30.2 2.3 30 10-39 11-40 (207) 26 3na7_A HP0958; flagellar bioge 90.4 0.074 3.1E-06 30.9 1.3 29 8-36 197-232 (256) 27 2jr6_A UPF0434 protein NMA0874 90.0 0.11 4.4E-06 30.0 1.8 30 10-39 9-39 (68) 28 3ndi_A Methyltransferase; S-ad 88.5 0.12 5E-06 29.7 1.2 27 10-36 13-63 (416) 29 1z60_A TFIIH basal transcripti 88.5 0.1 4.3E-06 30.1 0.8 33 4-38 10-42 (59) 30 1twf_L ABC10-alpha, DNA-direct 88.0 0.3 1.3E-05 27.2 3.0 32 5-36 24-55 (70) 31 2ctd_A Zinc finger protein 512 87.4 0.28 1.2E-05 27.4 2.5 36 8-43 33-79 (96) 32 3htk_C E3 SUMO-protein ligase 86.8 0.2 8.6E-06 28.3 1.5 31 11-45 183-213 (267) 33 3h0g_L DNA-directed RNA polyme 86.5 0.4 1.7E-05 26.5 2.9 33 4-36 16-48 (63) 34 2r6f_A Excinuclease ABC subuni 86.1 0.41 1.7E-05 26.4 2.8 36 6-41 264-311 (972) 35 2waq_P DNA-directed RNA polyme 85.8 0.29 1.2E-05 27.3 1.9 28 9-36 3-33 (48) 36 2jny_A Uncharacterized BCR; st 85.8 0.44 1.9E-05 26.2 2.8 37 3-39 4-41 (67) 37 2wbt_A B-129; zinc finger; 2.7 84.4 0.41 1.7E-05 26.4 2.2 33 10-42 75-116 (129) 38 2nn6_I 3'-5' exoribonuclease C 84.2 0.36 1.5E-05 26.7 1.8 33 2-35 161-194 (209) 39 2pk7_A Uncharacterized protein 84.1 0.35 1.5E-05 26.8 1.7 30 10-39 9-39 (69) 40 1zbd_B Rabphilin-3A; G protein 84.1 0.42 1.8E-05 26.3 2.1 28 9-36 55-82 (134) 41 2j01_5 50S ribosomal protein L 84.0 0.44 1.9E-05 26.2 2.2 21 10-34 31-51 (60) 42 2js4_A UPF0434 protein BB2007; 83.6 0.42 1.8E-05 26.3 2.0 32 8-39 7-39 (70) 43 2hf1_A Tetraacyldisaccharide-1 83.4 0.4 1.7E-05 26.5 1.7 30 10-39 9-39 (68) 44 1z2q_A LM5-1; membrane protein 82.6 0.77 3.3E-05 24.7 3.0 38 1-39 10-50 (84) 45 1q14_A HST2 protein; histone d 82.3 0.47 2E-05 26.0 1.8 31 9-39 144-184 (361) 46 3m7n_A Putative uncharacterize 82.2 0.73 3.1E-05 24.8 2.7 35 1-36 131-166 (179) 47 2k4x_A 30S ribosomal protein S 82.1 0.61 2.6E-05 25.3 2.3 29 8-36 17-47 (55) 48 2yw8_A RUN and FYVE domain-con 81.8 0.7 3E-05 25.0 2.5 29 8-37 18-46 (82) 49 2adr_A ADR1; transcription reg 81.8 0.59 2.5E-05 25.4 2.1 35 9-43 2-47 (60) 50 3glr_A NAD-dependent deacetyla 81.4 0.41 1.7E-05 26.4 1.2 31 9-39 139-176 (285) 51 2gqj_A Zinc finger protein KIA 80.9 0.22 9.3E-06 28.0 -0.3 36 8-43 23-71 (98) 52 1joc_A EEA1, early endosomal a 80.6 0.82 3.5E-05 24.5 2.5 27 10-37 70-96 (125) 53 1y02_A CARP2, FYVE-ring finger 80.5 0.58 2.4E-05 25.5 1.7 33 5-38 15-47 (120) 54 1bbo_A Human enhancer-binding 79.8 0.8 3.4E-05 24.6 2.2 34 9-42 1-45 (57) 55 1j8f_A SIRT2, sirtuin 2, isofo 79.6 0.57 2.4E-05 25.5 1.4 31 9-39 159-198 (323) 56 2ztg_A Alanyl-tRNA synthetase; 79.3 0.75 3.1E-05 24.8 2.0 30 5-34 15-47 (739) 57 1vk6_A NADH pyrophosphatase; 1 79.2 0.26 1.1E-05 27.6 -0.4 28 4-36 120-147 (269) 58 2zjr_Z 50S ribosomal protein L 79.1 0.64 2.7E-05 25.2 1.6 21 10-34 31-51 (60) 59 1qxf_A GR2, 30S ribosomal prot 79.0 1.6 6.8E-05 22.8 3.6 29 8-36 6-36 (66) 60 1m2k_A Silent information regu 78.7 0.95 4E-05 24.2 2.3 32 9-40 121-156 (249) 61 2zze_A Alanyl-tRNA synthetase; 78.3 0.86 3.6E-05 24.4 2.0 30 5-34 12-44 (752) 62 2gnr_A Conserved hypothetical 77.8 0.75 3.1E-05 24.8 1.6 23 10-35 48-70 (145) 63 1q1a_A HST2 protein; ternary c 77.4 0.91 3.8E-05 24.3 1.9 31 9-39 136-176 (289) 64 2yu4_A E3 SUMO-protein ligase 77.3 0.73 3.1E-05 24.8 1.4 29 10-42 8-36 (94) 65 1x4u_A Zinc finger, FYVE domai 77.2 1.1 4.8E-05 23.7 2.4 28 9-37 14-41 (84) 66 3ir9_A Peptide chain release f 77.1 1.3 5.6E-05 23.3 2.7 29 9-37 78-114 (166) 67 3cc2_Z 50S ribosomal protein L 76.9 1.1 4.5E-05 23.8 2.2 29 7-37 58-89 (116) 68 3h0g_I DNA-directed RNA polyme 76.6 1.9 8.1E-05 22.3 3.4 30 10-39 5-39 (113) 69 2yt9_A Zinc finger-containing 76.6 1.4 5.8E-05 23.2 2.7 30 11-40 9-49 (95) 70 1vfy_A Phosphatidylinositol-3- 76.4 1.4 5.9E-05 23.1 2.7 35 3-38 5-39 (73) 71 1x6h_A Transcriptional repress 76.1 1.4 5.9E-05 23.1 2.6 33 10-42 16-63 (86) 72 2avu_E Flagellar transcription 76.1 1.3 5.5E-05 23.3 2.4 24 10-33 135-161 (192) 73 1ltl_A DNA replication initiat 75.9 1.3 5.4E-05 23.4 2.3 28 10-37 135-168 (279) 74 2cot_A Zinc finger protein 435 75.7 1.4 5.9E-05 23.1 2.5 34 9-42 18-62 (77) 75 2fiy_A Protein FDHE homolog; F 75.1 1.1 4.6E-05 23.8 1.8 35 4-38 177-220 (309) 76 1llm_C Chimera of ZIF23-GCN4; 75.0 1.4 5.7E-05 23.2 2.3 33 10-42 4-47 (88) 77 2zkr_z 60S ribosomal protein L 74.2 0.76 3.2E-05 24.7 0.8 29 8-38 35-66 (92) 78 2kpi_A Uncharacterized protein 73.4 1.3 5.4E-05 23.4 1.8 32 8-39 9-41 (56) 79 2ct1_A Transcriptional repress 73.2 1.8 7.6E-05 22.4 2.6 34 9-42 15-61 (77) 80 1x6e_A Zinc finger protein 24; 73.1 1.7 7E-05 22.7 2.4 34 9-42 14-58 (72) 81 2kmk_A Zinc finger protein GFI 73.0 1.7 7E-05 22.7 2.3 29 11-39 3-42 (82) 82 2dlk_A Novel protein; ZF-C2H2 72.5 1.3 5.4E-05 23.3 1.7 32 11-42 11-56 (79) 83 3jwp_A Transcriptional regulat 72.2 1.6 6.7E-05 22.8 2.1 30 9-39 129-169 (265) 84 1s5p_A NAD-dependent deacetyla 70.6 1.2 4.9E-05 23.6 1.1 31 9-39 113-147 (235) 85 2hjh_A NAD-dependent histone d 70.3 1.2 5.2E-05 23.5 1.1 26 9-34 161-193 (354) 86 1twf_I B12.6, DNA-directed RNA 70.2 2.1 8.8E-05 22.1 2.3 31 9-39 4-39 (122) 87 3l11_A E3 ubiquitin-protein li 70.2 2.2 9.2E-05 21.9 2.4 34 1-39 3-40 (115) 88 3lu0_D DNA-directed RNA polyme 70.0 1.6 6.8E-05 22.8 1.7 21 15-36 72-92 (1407) 89 1wfk_A Zinc finger, FYVE domai 69.6 2.5 0.0001 21.6 2.6 31 7-38 7-37 (88) 90 1wjp_A Zinc finger protein 295 69.3 1.1 4.4E-05 23.9 0.6 27 11-37 18-53 (107) 91 1x5w_A Zinc finger protein 64, 69.1 2.7 0.00011 21.4 2.7 35 8-42 8-53 (70) 92 2waq_B DNA-directed RNA polyme 69.1 2.2 9.2E-05 21.9 2.2 26 10-35 1062-1088(1131) 93 2bay_A PRE-mRNA splicing facto 68.4 1.6 6.7E-05 22.8 1.4 34 7-44 1-34 (61) 94 2drp_A Protein (tramtrack DNA- 67.9 2.5 0.0001 21.6 2.3 31 10-40 11-54 (66) 95 1l1o_C Replication protein A 7 67.9 1.9 8.2E-05 22.3 1.8 29 9-37 43-73 (181) 96 2yto_A Zinc finger protein 484 67.0 2.1 9E-05 22.0 1.8 14 25-38 11-24 (46) 97 2ecy_A TNF receptor-associated 67.0 2.6 0.00011 21.5 2.3 33 5-42 11-43 (66) 98 2ep1_A Zinc finger protein 484 66.3 2.1 8.8E-05 22.1 1.7 13 25-37 11-23 (46) 99 2eps_A POZ-, at HOOK-, and zin 66.2 3.2 0.00014 20.9 2.6 32 6-37 9-52 (54) 100 2kwq_A Protein MCM10 homolog; 66.1 3.3 0.00014 20.9 2.6 39 8-47 45-87 (92) 101 3nw0_A Non-structural maintena 66.1 2.9 0.00012 21.2 2.4 27 11-37 195-228 (238) 102 1vq8_Z 50S ribosomal protein L 65.8 1.7 7.1E-05 22.6 1.1 29 7-37 25-56 (83) 103 4rxn_A Rubredoxin; electron tr 65.8 2.6 0.00011 21.5 2.1 26 9-35 3-45 (54) 104 3jyw_9 60S ribosomal protein L 65.8 2.9 0.00012 21.2 2.3 29 8-38 25-56 (72) 105 2i13_A AART; DNA binding, zinc 65.7 2.9 0.00012 21.2 2.3 10 27-36 162-171 (190) 106 1f2i_G Fusion of N-terminal 17 65.6 3 0.00013 21.1 2.4 33 10-42 20-65 (73) 107 3mpx_A FYVE, rhogef and PH dom 65.4 1.1 4.4E-05 23.9 0.0 26 10-36 376-401 (434) 108 2dlq_A GLI-kruppel family memb 65.4 3.8 0.00016 20.4 2.9 35 8-42 65-110 (124) 109 2qpz_A Naphthalene 1,2-dioxyge 65.1 2.5 0.0001 21.6 1.8 30 10-39 42-73 (103) 110 3o9x_A Uncharacterized HTH-typ 64.7 2.4 0.0001 21.7 1.7 28 12-39 5-50 (133) 111 3lrq_A E3 ubiquitin-protein li 64.5 2.8 0.00012 21.3 2.0 25 11-39 24-48 (100) 112 2wbs_A Krueppel-like factor 4; 64.5 3.5 0.00015 20.7 2.5 33 9-41 37-80 (89) 113 6rxn_A Rubredoxin; electron tr 64.4 2.9 0.00012 21.2 2.1 27 8-35 3-39 (46) 114 1ryq_A DNA-directed RNA polyme 63.8 2.5 0.0001 21.6 1.7 23 8-35 10-32 (69) 115 1e8j_A Rubredoxin; iron-sulfur 63.5 3.4 0.00014 20.7 2.3 26 9-35 3-45 (52) 116 1s24_A Rubredoxin 2; electron 63.4 3.7 0.00015 20.6 2.5 28 7-35 33-77 (87) 117 3fl2_A E3 ubiquitin-protein li 62.9 2.6 0.00011 21.5 1.6 28 11-43 54-81 (124) 118 1h7b_A Anaerobic ribonucleotid 62.6 1.3 5.7E-05 23.2 0.1 25 11-35 542-567 (605) 119 2csz_A Synaptotagmin-like prot 62.4 2.8 0.00012 21.3 1.7 28 9-36 25-52 (76) 120 2em2_A Zinc finger protein 28 62.3 3.3 0.00014 20.9 2.0 15 24-38 10-24 (46) 121 2ckl_A Polycomb group ring fin 62.3 2.5 0.0001 21.6 1.4 28 9-40 15-42 (108) 122 1p9r_A General secretion pathw 62.1 3 0.00012 21.1 1.8 23 8-34 303-345 (418) 123 2em8_A Zinc finger protein 224 61.9 3.3 0.00014 20.9 2.0 13 25-37 11-23 (46) 124 2zet_C Melanophilin; complex, 61.5 3.8 0.00016 20.5 2.3 27 10-36 69-95 (153) 125 2k5c_A Uncharacterized protein 61.4 2.4 0.0001 21.7 1.2 20 22-41 47-66 (95) 126 1ffk_W Ribosomal protein L37AE 61.3 2.4 0.0001 21.7 1.2 30 7-38 25-57 (73) 127 1yc5_A NAD-dependent deacetyla 60.9 3.5 0.00015 20.7 2.0 31 9-39 121-158 (246) 128 2ytq_A Zinc finger protein 268 60.4 3.4 0.00014 20.7 1.9 12 25-36 11-22 (46) 129 2xb4_A Adenylate kinase; ATP-b 59.8 3.4 0.00014 20.7 1.8 31 6-36 123-158 (223) 130 2jp9_A Wilms tumor 1; DNA bind 59.8 2 8.5E-05 22.2 0.6 13 25-37 65-77 (119) 131 3dpt_A ROCO, RAB family protei 59.6 2.1 9E-05 22.0 0.7 36 8-43 276-320 (332) 132 3mv2_A Coatomer subunit alpha; 59.6 6 0.00025 19.3 3.0 32 8-40 270-301 (325) 133 3ofq_0 50S ribosomal protein L 59.2 3.9 0.00016 20.4 2.0 19 11-34 29-47 (56) 134 2ee8_A Protein ODD-skipped-rel 59.1 4.4 0.00019 20.1 2.3 27 11-37 19-56 (106) 135 2emf_A Zinc finger protein 484 58.9 4.1 0.00017 20.2 2.1 13 25-37 11-23 (46) 136 2eov_A Zinc finger protein 484 58.7 3.8 0.00016 20.5 1.9 11 26-36 12-22 (46) 137 2eoq_A Zinc finger protein 224 58.5 3.5 0.00015 20.7 1.6 12 25-36 11-22 (46) 138 1rmd_A RAG1; V(D)J recombinati 58.4 3.7 0.00015 20.6 1.8 26 8-38 22-47 (116) 139 3gce_A Ferredoxin component of 58.2 5.4 0.00022 19.6 2.6 32 9-40 48-83 (121) 140 2f42_A STIP1 homology and U-bo 58.2 3.6 0.00015 20.6 1.7 30 10-44 107-136 (179) 141 1s1i_9 L37A, YL35, 60S ribosom 57.9 3.2 0.00014 20.9 1.4 30 7-38 33-65 (91) 142 2yur_A Retinoblastoma-binding 57.7 4.6 0.00019 20.0 2.2 30 9-42 15-44 (74) 143 2kre_A Ubiquitin conjugation f 57.5 2.9 0.00012 21.2 1.1 30 10-44 30-59 (100) 144 3hcs_A TNF receptor-associated 57.5 4.6 0.00019 20.0 2.1 26 6-36 15-40 (170) 145 2ckl_B Ubiquitin ligase protei 57.0 4.1 0.00017 20.3 1.8 27 11-41 56-82 (165) 146 2bx9_A Anti-trap, AT, tryptoph 56.5 2.8 0.00012 21.3 0.9 24 9-35 9-32 (53) 147 2ecw_A Tripartite motif-contai 56.4 4.2 0.00017 20.2 1.7 28 9-41 19-46 (85) 148 1yui_A GAGA-factor; complex (D 56.1 3.2 0.00013 21.0 1.1 18 21-38 19-36 (54) 149 1ubd_C Protein (YY1 zinc finge 55.9 2.8 0.00012 21.2 0.8 32 10-41 6-49 (124) 150 2dkt_A Ring finger and CHY zin 55.4 4.4 0.00019 20.1 1.8 25 10-34 72-106 (143) 151 2j9u_B VPS36, vacuolar protein 55.2 7.2 0.0003 18.8 2.8 46 1-46 9-60 (76) 152 2ctu_A Zinc finger protein 483 55.0 1.8 7.6E-05 22.4 -0.3 33 9-41 18-54 (73) 153 1jm7_B BARD1, BRCA1-associated 55.0 5.3 0.00022 19.6 2.1 28 11-42 24-51 (117) 154 2ghf_A ZHX1, zinc fingers and 54.9 3.9 0.00016 20.4 1.4 36 8-43 17-67 (102) 155 1wgm_A Ubiquitin conjugation f 54.7 4.6 0.0002 19.9 1.8 32 9-44 22-53 (98) 156 3lpe_B DNA-directed RNA polyme 54.5 4.5 0.00019 20.0 1.7 24 10-38 2-25 (59) 157 1gku_B Reverse gyrase, TOP-RG; 54.2 2.2 9.1E-05 22.0 0.0 24 10-36 582-605 (1054) 158 2con_A RUH-035 protein, NIN on 54.1 5.7 0.00024 19.4 2.1 22 11-34 17-38 (79) 159 2epq_A POZ-, at HOOK-, and zin 54.0 4.3 0.00018 20.1 1.5 13 25-37 9-21 (45) 160 2dmd_A Zinc finger protein 64, 53.7 8 0.00034 18.5 2.8 29 10-38 37-76 (96) 161 2ema_A Zinc finger protein 347 53.4 5.7 0.00024 19.4 2.0 17 24-40 10-26 (46) 162 2jr7_A DPH3 homolog; DESR1, CS 53.0 7.8 0.00033 18.6 2.7 32 10-42 24-65 (89) 163 2ct0_A Non-SMC element 1 homol 52.5 7.6 0.00032 18.6 2.6 28 10-37 29-63 (74) 164 2csh_A Zinc finger protein 297 52.4 4.8 0.0002 19.9 1.5 33 10-42 38-81 (110) 165 3lcz_A YCZA, inhibitor of trap 52.1 5.5 0.00023 19.5 1.8 24 9-35 9-32 (53) 166 2ep2_A Zinc finger protein 484 52.1 6.2 0.00026 19.2 2.1 16 24-39 10-25 (46) 167 2ecj_A Tripartite motif-contai 51.9 7.2 0.0003 18.8 2.4 35 4-43 10-44 (58) 168 2en1_A Zinc finger protein 224 51.4 4.7 0.0002 19.9 1.3 16 24-39 10-25 (46) 169 2epz_A Zinc finger protein 28 51.4 5.5 0.00023 19.5 1.7 16 24-39 10-25 (46) 170 1p91_A Ribosomal RNA large sub 51.3 5.4 0.00023 19.5 1.7 27 10-38 3-29 (269) 171 2ecv_A Tripartite motif-contai 51.2 6.1 0.00026 19.2 1.9 27 8-39 18-44 (85) 172 2vl6_A SSO MCM N-TER, minichro 50.7 8.7 0.00036 18.3 2.6 25 11-35 145-177 (268) 173 2ebt_A Krueppel-like factor 5; 50.6 8 0.00034 18.5 2.4 33 2-34 6-53 (100) 174 2elr_A Zinc finger protein 406 50.3 4.8 0.0002 19.9 1.2 15 6-20 6-20 (36) 175 3hct_A TNF receptor-associated 50.1 6.6 0.00028 19.0 1.9 27 8-39 17-43 (118) 176 1bor_A Transcription factor PM 49.9 5.6 0.00024 19.4 1.6 29 8-41 5-33 (56) 177 1weo_A Cellulose synthase, cat 49.9 8.8 0.00037 18.2 2.6 30 10-39 17-48 (93) 178 1z6u_A NP95-like ring finger p 49.1 7.2 0.0003 18.8 2.0 28 9-41 78-105 (150) 179 3knv_A TNF receptor-associated 49.1 7.2 0.0003 18.8 2.0 29 6-39 28-56 (141) 180 1wd2_A Ariadne-1 protein homol 48.6 5.5 0.00023 19.5 1.3 27 10-36 7-36 (60) 181 2ysj_A Tripartite motif-contai 48.4 10 0.00044 17.8 2.7 30 8-42 19-48 (63) 182 2k5r_A Uncharacterized protein 48.2 6.2 0.00026 19.2 1.6 18 21-38 48-65 (97) 183 2ppt_A Thioredoxin-2; thiredox 47.8 5.7 0.00024 19.4 1.3 11 8-18 13-23 (155) 184 1hqm_D DNA-directed RNA polyme 47.8 4.6 0.00019 20.0 0.8 23 11-36 57-80 (1265) 185 2ct2_A Tripartite motif protei 47.3 7.9 0.00033 18.5 2.0 28 11-39 17-44 (88) 186 2e72_A POGO transposable eleme 46.5 5.5 0.00023 19.5 1.1 17 26-42 12-28 (49) 187 2kn9_A Rubredoxin; metalloprot 45.5 7.6 0.00032 18.6 1.7 27 8-35 26-69 (81) 188 1ma3_A SIR2-AF2, transcription 45.1 8.1 0.00034 18.5 1.7 30 9-38 123-160 (253) 189 2v3b_B Rubredoxin 2, rubredoxi 44.9 8.8 0.00037 18.2 1.9 27 8-35 2-45 (55) 190 3k35_A Mono-ADP-ribosyltransfe 44.9 7 0.00029 18.9 1.4 30 10-39 139-184 (318) 191 3noy_A 4-hydroxy-3-methylbut-2 44.8 4.4 0.00019 20.1 0.4 18 25-42 270-288 (366) 192 2epa_A Krueppel-like factor 10 44.5 11 0.00047 17.6 2.4 34 9-42 17-65 (72) 193 1fv5_A First zinc finger of U- 44.4 4.4 0.00018 20.1 0.3 13 26-38 8-20 (36) 194 2egp_A Tripartite motif-contai 44.4 8.2 0.00035 18.4 1.7 32 5-41 8-39 (79) 195 1x3z_A Peptide:N-glycanase; pr 43.7 9.9 0.00041 17.9 2.0 46 5-50 115-185 (335) 196 3mkr_B Coatomer subunit alpha; 43.5 14 0.00057 17.1 2.7 31 9-40 262-292 (320) 197 1p7a_A BF3, BKLF, kruppel-like 43.3 7.6 0.00032 18.6 1.4 20 23-42 8-27 (37) 198 2yre_A F-box only protein 30; 43.1 8.8 0.00037 18.2 1.7 18 25-42 36-54 (100) 199 1ard_A Yeast transcription fac 42.0 7.2 0.0003 18.8 1.1 16 25-40 1-16 (29) 200 2jsp_A Transcriptional regulat 41.9 7.2 0.0003 18.8 1.1 16 7-22 19-34 (87) 201 2jo6_A Nitrite reductase [NAD( 41.8 9.9 0.00042 17.9 1.8 33 8-40 45-84 (113) 202 2odx_A Cytochrome C oxidase po 41.7 11 0.00045 17.7 2.0 28 14-41 43-71 (80) 203 3d89_A Rieske domain-containin 41.3 8.7 0.00036 18.3 1.4 30 10-39 55-90 (157) 204 2f4m_A Peptide N-glycanase; gl 40.5 14 0.00058 17.1 2.4 45 5-49 77-143 (295) 205 1wys_A Riken cDNA 2310008M20 p 40.2 15 0.00062 16.8 2.5 32 1-38 8-41 (75) 206 2e9h_A EIF-5, eukaryotic trans 40.2 15 0.00065 16.7 2.6 29 10-38 104-138 (157) 207 2kfq_A FP1; protein, de novo p 39.1 5.8 0.00024 19.4 0.2 10 28-37 4-13 (32) 208 1s1i_Y L35, YP55, 60S ribosoma 38.8 14 0.00059 17.0 2.2 23 10-34 16-38 (87) 209 2ctt_A DNAJ homolog subfamily 38.7 13 0.00054 17.2 2.0 29 6-34 25-53 (104) 210 2elu_A Zinc finger protein 406 38.7 6.8 0.00028 18.9 0.5 19 5-23 5-23 (37) 211 1wge_A Hypothetical protein 26 38.1 8.6 0.00036 18.3 1.0 26 10-36 31-62 (83) 212 2d9h_A Zinc finger protein 692 37.8 9.3 0.00039 18.1 1.1 34 11-44 9-56 (78) 213 2vrw_B P95VAV, VAV1, proto-onc 37.6 13 0.00056 17.1 1.9 29 10-38 358-386 (406) 214 2d9k_A FLN29 gene product; zin 37.3 12 0.00052 17.3 1.7 33 9-41 17-58 (75) 215 2a20_A Regulating synaptic mem 37.2 16 0.00066 16.7 2.2 32 4-36 4-35 (62) 216 1vq8_1 50S ribosomal protein L 37.1 15 0.00064 16.8 2.1 29 4-34 7-40 (57) 217 2eod_A TNF receptor-associated 36.6 11 0.00048 17.6 1.4 15 24-38 8-22 (66) 218 2yqq_A Zinc finger HIT domain- 36.5 10 0.00043 17.9 1.2 21 10-36 13-33 (56) 219 3dpu_A RAB family protein; roc 36.4 6.7 0.00028 19.0 0.2 35 8-42 479-522 (535) 220 2kr4_A Ubiquitin conjugation f 36.4 13 0.00054 17.2 1.7 30 9-43 14-43 (85) 221 3eh1_A Protein transport prote 36.2 14 0.00059 17.0 1.8 24 11-36 87-116 (751) 222 2kvf_A Zinc finger and BTB dom 36.1 10 0.00043 17.8 1.1 14 25-38 2-15 (28) 223 1yk4_A Rubredoxin, RD; electro 36.0 16 0.00068 16.6 2.1 19 16-35 26-44 (52) 224 1mzb_A Ferric uptake regulatio 35.7 17 0.00072 16.5 2.2 30 9-38 70-103 (136) 225 2pw4_A Uncharacterized protein 35.7 14 0.0006 17.0 1.8 33 3-35 139-176 (188) 226 2poi_A Baculoviral IAP repeat- 35.4 14 0.00057 17.1 1.7 19 19-37 47-66 (94) 227 2qgp_A HNH endonuclease; Q39X4 35.3 11 0.00047 17.6 1.2 12 28-39 37-48 (112) 228 1nui_A DNA primase/helicase; z 35.2 21 0.0009 15.9 2.7 27 10-38 15-45 (255) 229 2j7j_A Transcription factor II 35.2 11 0.00046 17.7 1.1 31 12-42 6-49 (85) 230 2b4y_A NAD-dependent deacetyla 35.1 15 0.00061 16.9 1.8 15 9-23 132-146 (271) 231 1wfl_A Zinc finger protein 216 35.1 17 0.00072 16.5 2.1 27 7-37 23-49 (74) 232 1fqt_A Rieske-type ferredoxin 35.1 14 0.0006 16.9 1.7 30 11-40 45-77 (112) 233 1vzi_A Desulfoferrodoxin; ferr 34.8 14 0.0006 17.0 1.7 25 11-37 9-35 (126) 234 1wfe_A Riken cDNA 2310008M20 p 34.5 23 0.00096 15.7 2.7 30 6-39 22-53 (86) 235 3bbo_W Ribosomal protein L24; 34.0 15 0.00064 16.8 1.7 30 9-38 135-170 (191) 236 2w57_A Ferric uptake regulatio 33.9 13 0.00054 17.3 1.3 29 10-38 70-102 (150) 237 2elp_A Zinc finger protein 406 33.7 15 0.00062 16.9 1.6 15 23-37 6-20 (37) 238 3k30_A Histamine dehydrogenase 33.1 8.6 0.00036 18.3 0.4 30 9-38 345-378 (690) 239 1u5k_A Hypothetical protein; O 33.0 22 0.00093 15.8 2.4 28 10-37 151-181 (244) 240 2d8t_A Dactylidin, ring finger 33.0 14 0.00057 17.1 1.3 26 11-41 17-42 (71) 241 1yop_A KTI11P; zinc finger, me 32.6 8.5 0.00036 18.3 0.3 26 10-36 24-55 (83) 242 1ejp_A Syndecan-4; symmetric-p 32.2 14 0.00058 17.0 1.3 17 19-35 9-25 (28) 243 1v54_F VI, cytochrome C oxidas 32.0 22 0.00093 15.8 2.3 23 16-38 68-91 (98) 244 1exk_A DNAJ protein; extended 32.0 13 0.00056 17.1 1.2 31 5-35 7-37 (79) 245 2yte_A Zinc finger protein 473 31.8 15 0.00063 16.8 1.4 19 23-41 7-25 (42) 246 1nnq_A Rubrerythrin; structura 31.6 15 0.00062 16.9 1.3 10 27-36 140-149 (171) 247 1t1h_A Gspef-atpub14, armadill 31.4 15 0.00064 16.8 1.4 32 8-44 7-38 (78) 248 2g2k_A EIF-5, eukaryotic trans 31.4 23 0.00095 15.7 2.3 29 10-38 97-131 (170) 249 1dx8_A Rubredoxin; electron tr 31.3 22 0.00092 15.8 2.2 27 8-35 6-49 (70) 250 2yt5_A Metal-response element- 31.3 24 0.001 15.6 2.4 35 7-41 4-38 (66) 251 2i7f_A Ferredoxin component of 31.0 18 0.00074 16.4 1.7 31 9-39 42-74 (108) 252 3jyw_Y 60S ribosomal protein L 30.9 22 0.00093 15.8 2.1 22 11-34 17-38 (52) 253 2csy_A Zinc finger protein 183 30.3 21 0.0009 15.9 2.0 27 10-41 16-42 (81) 254 2jne_A Hypothetical protein YF 30.1 12 0.00052 17.3 0.8 29 5-37 43-72 (101) 255 1rim_A E6APC2 peptide; E6-bind 29.9 13 0.00056 17.2 0.9 11 28-38 4-14 (33) 256 1wfh_A Zinc finger (AN1-like) 29.7 27 0.0012 15.2 2.5 27 7-37 13-39 (64) 257 1hxr_A Guanine nucleotide exch 29.7 15 0.00065 16.7 1.2 14 23-36 9-22 (115) 258 3iuf_A Zinc finger protein UBI 29.5 15 0.00063 16.8 1.1 20 24-43 5-24 (48) 259 2yuc_A TNF receptor-associated 29.4 18 0.00075 16.4 1.4 33 10-42 17-60 (76) 260 1dt9_A ERF1, protein (eukaryot 29.4 14 0.0006 17.0 1.0 29 9-37 332-367 (437) 261 1l8d_A DNA double-strand break 28.9 18 0.00075 16.4 1.4 19 21-39 42-60 (112) 262 3c0d_A Putative nitrite reduct 28.8 30 0.0012 15.0 3.3 32 9-40 44-82 (119) 263 1wev_A Riken cDNA 1110020M19; 28.8 24 0.001 15.5 2.1 31 10-40 17-47 (88) 264 2eos_A B-cell lymphoma 6 prote 28.8 18 0.00076 16.3 1.4 20 23-42 8-27 (42) 265 3dqy_A Toluene 1,2-dioxygenase 28.5 22 0.00093 15.8 1.8 31 9-39 39-71 (106) 266 2jrp_A Putative cytoplasmic pr 27.9 21 0.00086 16.0 1.6 24 10-37 19-42 (81) 267 2d8s_A Cellular modulator of i 27.7 28 0.0012 15.1 2.2 13 26-38 58-70 (80) 268 2vf7_A UVRA2, excinuclease ABC 27.6 24 0.001 15.6 1.9 24 11-34 130-156 (842) 269 3n71_A Histone lysine methyltr 27.6 31 0.0013 14.9 2.5 24 9-36 49-72 (490) 270 1zu1_A DSRBP-ZFA, RNA binding 27.5 12 0.0005 17.4 0.3 11 26-36 93-103 (127) 271 1x4v_A Hypothetical protein LO 27.3 17 0.00071 16.5 1.0 27 11-39 14-40 (63) 272 1vm9_A Toluene-4-monooxygenase 27.0 24 0.001 15.5 1.8 31 10-40 42-74 (111) 273 3m1d_A Baculoviral IAP repeat- 27.0 23 0.00096 15.7 1.7 19 19-37 38-57 (85) 274 2de6_D Ferredoxin component of 27.0 24 0.001 15.6 1.8 31 9-39 43-75 (115) 275 2eoh_A Zinc finger protein 28 26.9 19 0.0008 16.2 1.2 20 23-42 9-28 (46) 276 2zkr_2 60S ribosomal protein L 26.9 27 0.0011 15.3 2.0 29 4-34 6-39 (97) 277 2d74_B Translation initiation 26.7 21 0.00087 16.0 1.4 32 11-42 106-141 (148) 278 2emb_A Zinc finger protein 473 26.7 21 0.0009 15.9 1.5 20 23-42 9-28 (44) 279 1qyp_A RNA polymerase II; tran 26.2 13 0.00055 17.2 0.3 10 25-34 14-23 (57) 280 1x4w_A Hypothetical protein FL 26.1 9.5 0.0004 18.0 -0.4 33 3-36 9-41 (67) 281 2emz_A ZFP-95, zinc finger pro 25.8 21 0.00087 16.0 1.3 18 23-40 9-26 (46) 282 1sp2_A SP1F2; zinc finger, tra 25.6 19 0.00082 16.1 1.1 18 25-42 1-20 (31) 283 2jmo_A Parkin; IBR, E3 ligase, 25.5 34 0.0014 14.6 2.4 28 10-37 26-61 (80) 284 2eof_A Zinc finger protein 268 25.4 23 0.00097 15.7 1.4 20 23-42 9-28 (44) 285 3ofq_1 50S ribosomal protein L 25.4 22 0.0009 15.9 1.3 28 8-35 6-43 (50) 286 2ept_A Zinc finger protein 32; 25.3 25 0.0011 15.4 1.6 20 23-42 7-26 (41) 287 2epc_A Zinc finger protein 32; 25.1 25 0.0011 15.5 1.6 18 23-40 8-25 (42) 288 2vm5_A Baculoviral IAP repeat- 25.1 26 0.0011 15.3 1.7 19 19-37 48-67 (106) 289 2djb_A Polycomb group ring fin 25.1 34 0.0014 14.6 2.3 32 6-41 12-43 (72) 290 1jm7_A BRCA1, breast cancer ty 25.0 8.8 0.00037 18.2 -0.8 23 10-37 22-44 (112) 291 2jw6_A Deformed epidermal auto 24.9 32 0.0014 14.8 2.1 24 7-36 7-30 (52) 292 1vyx_A ORF K3, K3RING; zinc-bi 24.8 20 0.00082 16.1 1.0 28 11-38 8-35 (60) 293 2yso_A ZFP-95, zinc finger pro 24.7 25 0.001 15.5 1.5 19 23-41 9-27 (46) 294 1va1_A Transcription factor SP 24.6 25 0.0011 15.5 1.5 17 24-40 6-24 (37) 295 1wff_A Riken cDNA 2810002D23 p 24.3 36 0.0015 14.5 2.8 26 9-37 25-50 (85) 296 1d4u_A Nucleotide excision rep 24.3 35 0.0015 14.6 2.2 25 10-34 6-34 (111) 297 3f2b_A DNA-directed DNA polyme 24.2 21 0.00087 16.0 1.0 12 25-36 526-537 (1041) 298 2yu5_A Zinc finger protein 473 24.1 27 0.0011 15.3 1.6 20 23-42 9-28 (44) 299 2emx_A Zinc finger protein 268 23.9 27 0.0011 15.3 1.5 20 23-42 7-26 (44) 300 3h2y_A GTPase family protein; 23.8 13 0.00057 17.1 0.0 25 9-33 4-41 (368) 301 2fe3_A Peroxide operon regulat 23.6 34 0.0014 14.7 2.0 29 10-38 74-105 (145) 302 1nlt_A Protein YDJ1, mitochond 23.4 30 0.0013 14.9 1.8 10 6-15 51-60 (248) 303 2c2l_A CHIP, carboxy terminus 23.1 35 0.0015 14.6 2.0 29 11-44 210-238 (281) 304 2en2_A B-cell lymphoma 6 prote 23.1 28 0.0012 15.1 1.5 20 23-42 8-27 (42) 305 2elq_A Zinc finger protein 406 22.9 28 0.0012 15.2 1.5 20 23-42 6-25 (36) 306 2ep4_A Ring finger protein 24; 22.8 35 0.0015 14.5 2.0 32 6-39 12-43 (74) 307 1iym_A EL5; ring-H2 finger, ub 22.7 38 0.0016 14.4 2.1 31 11-42 7-37 (55) 308 1v98_A Thioredoxin; oxidoreduc 22.7 15 0.00062 16.9 0.0 13 11-27 4-16 (140) 309 1yuz_A Nigerythrin; rubrythrin 22.6 24 0.00099 15.6 1.1 10 28-37 173-182 (202) 310 2epv_A Zinc finger protein 268 22.1 30 0.0013 15.0 1.5 20 23-42 9-28 (44) 311 3e20_C Eukaryotic peptide chai 22.0 17 0.00073 16.4 0.3 29 9-37 337-374 (441) 312 2epr_A POZ-, at HOOK-, and zin 22.0 23 0.00097 15.7 0.9 21 23-43 9-29 (48) 313 2el6_A Zinc finger protein 268 21.9 31 0.0013 14.9 1.6 19 23-41 9-27 (46) 314 2el5_A Zinc finger protein 268 21.7 31 0.0013 14.9 1.5 20 23-42 7-26 (42) 315 2eou_A Zinc finger protein 473 21.5 28 0.0012 15.2 1.2 20 23-42 9-28 (44) 316 2yrk_A Zinc finger homeobox pr 21.5 25 0.0011 15.4 1.0 16 24-39 11-26 (55) 317 1dj7_A Ferredoxin thioredoxin 21.5 11 0.00047 17.6 -0.8 35 4-42 48-97 (117) 318 2en7_A Zinc finger protein 268 21.3 29 0.0012 15.1 1.3 20 23-42 9-28 (44) 319 2gbw_A Biphenyl 2,3-dioxygenas 21.2 34 0.0014 14.7 1.6 31 10-40 78-111 (454) 320 2em4_A Zinc finger protein 28 21.1 33 0.0014 14.7 1.5 20 23-42 9-28 (46) 321 2elt_A Zinc finger protein 406 21.1 33 0.0014 14.7 1.5 20 23-42 6-25 (36) 322 2xeu_A Ring finger protein 4; 21.0 13 0.00055 17.2 -0.5 32 7-38 1-34 (64) 323 2el4_A Zinc finger protein 268 20.6 35 0.0015 14.6 1.6 20 23-42 9-28 (46) 324 2qra_D XIAP, baculoviral IAP r 20.6 36 0.0015 14.5 1.7 20 18-37 63-83 (111) 325 3ky9_A Proto-oncogene VAV; cal 20.5 35 0.0015 14.6 1.5 12 10-21 530-541 (587) 326 2em0_A Zinc finger protein 224 20.5 30 0.0013 15.0 1.2 20 23-42 9-28 (46) 327 3hl5_A Baculoviral IAP repeat- 20.4 37 0.0016 14.4 1.7 20 18-37 37-57 (95) 328 1a7i_A QCRP2 (LIM1); LIM domai 20.4 27 0.0011 15.3 1.0 36 4-39 2-47 (81) 329 2emm_A ZFP-95, zinc finger pro 20.3 34 0.0014 14.6 1.5 20 23-42 9-28 (46) 330 2eoo_A ZFP-95, zinc finger pro 20.3 36 0.0015 14.5 1.6 20 23-42 9-28 (46) 331 2jza_A Nitrite reductase [NAD( 20.3 43 0.0018 14.0 3.1 32 9-40 43-81 (130) 332 2ytm_A Zinc finger protein 28 20.1 30 0.0013 15.0 1.2 18 24-41 10-27 (46) 333 1g73_C Inhibitors of apoptosis 20.1 38 0.0016 14.4 1.7 18 19-36 52-70 (121) 334 1ncs_A Peptide M30F, transcrip 20.0 31 0.0013 14.9 1.2 19 21-39 13-33 (47) No 1 >2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5 Probab=95.46 E-value=0.0074 Score=37.08 Aligned_cols=32 Identities=16% Similarity=0.407 Sum_probs=26.3 Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCEECHHH Q ss_conf 31178888744214888722778987153233 Q gi|254780459|r 9 KRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~ 40 (129) =--||.|+.-|-=-...-.+||.||.||.+.. T Consensus 27 lP~CP~C~seytY~dg~~~vCPeC~hEW~~~~ 58 (138) T 2akl_A 27 LPPCPQCNSEYTYEDGALLVCPECAHEWSPNE 58 (138) T ss_dssp SCCCTTTCCCCCEECSSSEEETTTTEEECTTT T ss_pred CCCCCCCCCCCEECCCCEEECCCCCCCCCCCC T ss_conf 98898889902373799888987637378453 No 2 >2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str} Probab=95.40 E-value=0.0077 Score=36.95 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=21.4 Q ss_pred CEEEECCCC-CCCCCCCCCEECHHHHHCC Q ss_conf 744214888-7227789871532331012 Q gi|254780459|r 17 KRFYDLNKQ-VIVSPYTQNSWPLAYFEAP 44 (129) Q Consensus 17 ~KFYDlnk~-PiiCP~CG~e~~~~~~~~~ 44 (129) .-|++|.+. +++|||||+.|.....++. T Consensus 38 ~Vyl~~~~~~~v~CpYC~~~fv~~~~l~~ 66 (87) T 2jz8_A 38 HIFIDMGSTDEKICPYCSTLYRYDPSLSY 66 (87) T ss_dssp SCEEECTTCCEECCTTTCCEEECCTTSCT T ss_pred EEEEECCCCCEEECCCCCCEEEECCCCCC T ss_conf 89788699997988899988883777776 No 3 >1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1 Probab=95.00 E-value=0.0082 Score=36.78 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=27.1 Q ss_pred CCCCCCCCCCCE--EEECCCCCCCCCCCCCEECHH Q ss_conf 783117888874--421488872277898715323 Q gi|254780459|r 7 GTKRTCPDTGKR--FYDLNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 7 G~KR~C~~Cg~K--FYDlnk~PiiCP~CG~e~~~~ 39 (129) ..+|+||.||.+ .||-.+--++|..||..+.-. T Consensus 3 ~~~~~Cp~Cgs~~iv~D~~~Ge~vC~~CG~V~~e~ 37 (50) T 1pft_A 3 NKQKVCPACESAELIYDPERGEIVCAKCGYVIEEN 37 (50) T ss_dssp SSCCSCTTTSCCCEEEETTTTEEEESSSCCBCCCC T ss_pred CCCCCCCCCCCCCEEEECCCCEEECCCCCCEECCC T ss_conf 65553859889837886888928627898593324 No 4 >2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 Probab=94.06 E-value=0.011 Score=36.08 Aligned_cols=32 Identities=22% Similarity=0.533 Sum_probs=27.7 Q ss_pred CCCCCCCCCCCEEE--ECCCCCCCCCCCCCEECH Q ss_conf 78311788887442--148887227789871532 Q gi|254780459|r 7 GTKRTCPDTGKRFY--DLNKQVIVSPYTQNSWPL 38 (129) Q Consensus 7 G~KR~C~~Cg~KFY--Dlnk~PiiCP~CG~e~~~ 38 (129) |.=..||+||.-.| +|.+.==+||+||.-|.. T Consensus 22 ~lW~kC~~C~~~~~~~~l~~n~~vCp~C~~H~ri 55 (304) T 2f9y_B 22 GVWTKCDSCGQVLYRAELERNLEVCPKCDHHMRM 55 (304) T ss_dssp -CEECCTTTCCCEETTHHHHTTTBCTTTCCBCCC T ss_pred CCCCCCCCCCCEEEHHHHHHHCCCCCCCCCCCCC T ss_conf 7621387877631599999848899499898754 No 5 >2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2 PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D* 2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D Probab=93.92 E-value=0.017 Score=34.89 Aligned_cols=31 Identities=10% Similarity=0.085 Sum_probs=21.7 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCEECHHHHHC Q ss_conf 178888744214888722778987153233101 Q gi|254780459|r 11 TCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEA 43 (129) Q Consensus 11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~ 43 (129) -| .|| ||.-....-++|+.||.|+......+ T Consensus 57 eC-~CG-kyk~~~~~g~~C~~CgVEvt~s~vRR 87 (1524) T 2a6h_D 57 EC-ACG-KYKRQRFEGKVCERCGVEVTKSIVRR 87 (1524) T ss_dssp CC-SSC-SSCSSTTTTCCCSSSCCCCSSTHHHH T ss_pred EE-ECC-CCCCCCCCCEECCCCCCEECCCCHHH T ss_conf 67-387-76552649827799987878432576 No 6 >1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Probab=93.76 E-value=0.033 Score=33.10 Aligned_cols=35 Identities=11% Similarity=0.191 Sum_probs=30.4 Q ss_pred CCHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEEC Q ss_conf 752227831178888744214888722778987153 Q gi|254780459|r 2 AKPELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSWP 37 (129) Q Consensus 2 aK~elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~ 37 (129) ..|.|=.-+.|..|+++|= |-+..-.|..||..|= T Consensus 154 ~~p~w~~~~~C~~C~~~F~-~~~r~~~Cr~CG~~~C 188 (220) T 1dvp_A 154 TAPNWADGRVCHRCRVEFT-FTNRKHHCRNCGQVFC 188 (220) T ss_dssp CCCCCCCCSBCTTTCCBCC-SSSCCEECTTTCCEEC T ss_pred CCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCHHHH T ss_conf 4222567885767898111-7653716440278862 No 7 >1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubredoxin-like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A Probab=93.74 E-value=0.013 Score=35.58 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=25.0 Q ss_pred HHHCCCCCCCCCCCEEEECCCCCCCCCCCCCE Q ss_conf 22278311788887442148887227789871 Q gi|254780459|r 4 PELGTKRTCPDTGKRFYDLNKQVIVSPYTQNS 35 (129) Q Consensus 4 ~elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e 35 (129) ++-+++-+|+.||--++. ..-|-+||-||+. T Consensus 150 ~~~~~~~~C~~CG~i~~g-~~~p~~CP~C~~~ 180 (191) T 1lko_A 150 REQATKWRCRNCGYVHEG-TGAPELCPACAHP 180 (191) T ss_dssp EEEEEEEEETTTCCEEEE-EECCSBCTTTCCB T ss_pred CCCCCEEECCCCCCCCCC-CCCCCCCCCCCCC T ss_conf 578845789999860128-9998859799996 No 8 >2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2} Probab=93.47 E-value=0.027 Score=33.67 Aligned_cols=25 Identities=8% Similarity=0.292 Sum_probs=19.7 Q ss_pred CEEEECCCC--CCCCCCCCCEECHHHH Q ss_conf 744214888--7227789871532331 Q gi|254780459|r 17 KRFYDLNKQ--VIVSPYTQNSWPLAYF 41 (129) Q Consensus 17 ~KFYDlnk~--PiiCP~CG~e~~~~~~ 41 (129) .-||.|++. +++|||||.-|..... T Consensus 42 ~Vyl~l~~~~~~v~C~YC~~~fv~k~~ 68 (80) T 2jvm_A 42 RVWLSIPHETGFVECGYCDRRYIHESF 68 (80) T ss_dssp CEEEECCTTTCEEECSSSSCEEEEHHH T ss_pred EEEEECCCCCCEEECCCCCCEEECHHH T ss_conf 893875799986988899886670445 No 9 >3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Probab=93.31 E-value=0.034 Score=33.00 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=28.2 Q ss_pred HHHCCCCCCCCCCC----EEEECCCCCCCCCCCCCEEC Q ss_conf 22278311788887----44214888722778987153 Q gi|254780459|r 4 PELGTKRTCPDTGK----RFYDLNKQVIVSPYTQNSWP 37 (129) Q Consensus 4 ~elG~KR~C~~Cg~----KFYDlnk~PiiCP~CG~e~~ 37 (129) +.+-++++||.||. -.+|...--++|-.||..+. T Consensus 16 ~~~~~~~~C~~C~~~~~~iv~D~~~G~~vC~~CG~Vl~ 53 (345) T 3k7a_M 16 PNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (345) T ss_dssp -CCCCCCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCC T ss_pred CCCCCCEECCCCCCCCCCEEEECCCCCEECCCCCCCCC T ss_conf 99860318959999998646787889883146887804 No 10 >1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A Probab=93.25 E-value=0.043 Score=32.36 Aligned_cols=39 Identities=13% Similarity=0.126 Sum_probs=30.3 Q ss_pred CCHHHCCCCCCCCCCCE--EEECCCCCCCCCCCCCEECHHH Q ss_conf 75222783117888874--4214888722778987153233 Q gi|254780459|r 2 AKPELGTKRTCPDTGKR--FYDLNKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 2 aK~elG~KR~C~~Cg~K--FYDlnk~PiiCP~CG~e~~~~~ 40 (129) ++...-.|..||+||.+ .||-.+--+||..||..+.-.. T Consensus 4 ~~~~~~~~~~Cp~Cgs~~iv~D~~~Ge~vC~~CG~Vlee~~ 44 (58) T 1dl6_A 4 SRLDALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRV 44 (58) T ss_dssp CSCCCCSCCSBTTBSSSCCEECSSSCCEECTTTCCEECCSC T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCEEECCCCCCEECCCC T ss_conf 42325675589698798777888899187278998924331 No 11 >2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A Probab=93.18 E-value=0.036 Score=32.86 Aligned_cols=22 Identities=27% Similarity=0.712 Sum_probs=18.7 Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCE Q ss_conf 311788887442148887227789871 Q gi|254780459|r 9 KRTCPDTGKRFYDLNKQVIVSPYTQNS 35 (129) Q Consensus 9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e 35 (129) =|.|++||. |=|.. +||.||.. T Consensus 6 irkC~~C~~--YTL~~---~Cp~CG~~ 27 (60) T 2apo_B 6 MKKCPKCGL--YTLKE---ICPKCGEK 27 (60) T ss_dssp CEECTTTCC--EESSS---BCSSSCSB T ss_pred HHHCCCCCC--EECCC---CCCCCCCC T ss_conf 651874666--53545---37678784 No 12 >2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori} Probab=93.14 E-value=0.042 Score=32.44 Aligned_cols=27 Identities=15% Similarity=0.122 Sum_probs=19.0 Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCE Q ss_conf 311788887442148887227789871 Q gi|254780459|r 9 KRTCPDTGKRFYDLNKQVIVSPYTQNS 35 (129) Q Consensus 9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e 35 (129) .-.|++||..|.--...-..||.||.. T Consensus 73 ~~~C~~Cg~~~~~~~~~~~~CP~Cgs~ 99 (119) T 2kdx_A 73 ELECKDCSHVFKPNALDYGVCEKCHSK 99 (119) T ss_dssp EEECSSSSCEECSCCSTTCCCSSSSSC T ss_pred EEECCCCCCEECCCCCCCCCCCCCCCC T ss_conf 789878998833477547729097899 No 13 >3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Probab=92.87 E-value=0.032 Score=33.17 Aligned_cols=32 Identities=16% Similarity=0.194 Sum_probs=26.2 Q ss_pred HCCCCCCCCCCCE---E-EECCCCCCCCCCCCCEEC Q ss_conf 2783117888874---4-214888722778987153 Q gi|254780459|r 6 LGTKRTCPDTGKR---F-YDLNKQVIVSPYTQNSWP 37 (129) Q Consensus 6 lG~KR~C~~Cg~K---F-YDlnk~PiiCP~CG~e~~ 37 (129) +-++.+||.||.+ + ||-.+--+||-.||..+. T Consensus 18 lNitl~CPeCGS~~t~IVeD~s~GEiVCsdCGLVIE 53 (197) T 3k1f_M 18 LNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (197) T ss_dssp CCCCCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCC T ss_pred CEEEEECCCCCCCCCEEEEECCCCCEECCCCCEEEC T ss_conf 865468999999899898979989689714892924 No 14 >2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} Probab=92.58 E-value=0.03 Score=33.37 Aligned_cols=29 Identities=24% Similarity=0.433 Sum_probs=25.3 Q ss_pred CCCCCCCCEEE--ECCCCCCCCCCCCCEECH Q ss_conf 11788887442--148887227789871532 Q gi|254780459|r 10 RTCPDTGKRFY--DLNKQVIVSPYTQNSWPL 38 (129) Q Consensus 10 R~C~~Cg~KFY--Dlnk~PiiCP~CG~e~~~ 38 (129) ..||+||.-.| ||-+.==|||+||.-|.. T Consensus 31 ~kCp~C~~~i~~~dl~~n~~VCp~C~~H~rl 61 (285) T 2f9i_B 31 TKCPKCKKIMYTKELAENLNVCFNCDHHIAL 61 (285) T ss_dssp EECTTTCCEEEHHHHHHTTTBCTTTCCBCCC T ss_pred ECCCCCCCHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 0288887313299999848889099799865 No 15 >2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi} Probab=92.37 E-value=0.034 Score=33.02 Aligned_cols=22 Identities=14% Similarity=0.430 Sum_probs=17.7 Q ss_pred CEEEECCCC--CCCCCCCCCEECH Q ss_conf 744214888--7227789871532 Q gi|254780459|r 17 KRFYDLNKQ--VIVSPYTQNSWPL 38 (129) Q Consensus 17 ~KFYDlnk~--PiiCP~CG~e~~~ 38 (129) .-||.|++. .++|||||.-|.. T Consensus 29 ~Vyl~l~~~~~~v~CpYC~~~fv~ 52 (67) T 2jrr_A 29 RVWLQIPEDTGWVECPYCDCKYVL 52 (67) T ss_dssp EEEEECCTTTSEEEETTTTEEEEE T ss_pred EEEEECCCCCCEEECCCCCCEEEE T ss_conf 898985699986989889879898 No 16 >2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structural genomics, PSI; NMR {Pyrococcus furiosus dsm 3638} SCOP: a.4.5.82 Probab=91.97 E-value=0.053 Score=31.83 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=23.8 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCEEC Q ss_conf 178888744214888722778987153 Q gi|254780459|r 11 TCPDTGKRFYDLNKQVIVSPYTQNSWP 37 (129) Q Consensus 11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~ 37 (129) .|-+||--|=|.-|.|=-||.|..+|. T Consensus 69 ~CrkCGfvF~d~~kkPSRCP~CKSE~I 95 (105) T 2gmg_A 69 QCRKCGFVFKAEINIPSRCPKCKSEWI 95 (105) T ss_dssp BBTTTCCBCCCCSSCCSSCSSSCCCCB T ss_pred HHCCCCCEECCCCCCCCCCCCCCCCCC T ss_conf 023085774788999998999887462 No 17 >1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1 Probab=91.44 E-value=0.1 Score=30.04 Aligned_cols=28 Identities=14% Similarity=0.326 Sum_probs=23.0 Q ss_pred CCCCCCCEE--------EECCCCCCCCCCCCCEECH Q ss_conf 178888744--------2148887227789871532 Q gi|254780459|r 11 TCPDTGKRF--------YDLNKQVIVSPYTQNSWPL 38 (129) Q Consensus 11 ~C~~Cg~KF--------YDlnk~PiiCP~CG~e~~~ 38 (129) +||.|+++| +|+...-.+|-.||+++.. T Consensus 16 ~Cp~C~k~ys~Lda~~Lld~~~~~F~C~~C~~el~e 51 (62) T 1vd4_A 16 KCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEE 51 (62) T ss_dssp ECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEE T ss_pred ECCCCCCEECHHHHHHHCCCCCCEEEECCCCCEEEC T ss_conf 888988882375598835967891973688999655 No 18 >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase- inhibitor complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Probab=91.38 E-value=0.077 Score=30.84 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=21.8 Q ss_pred CCCCCCCCCCCEEE---E--CCCCCCCCCCCCCEECH Q ss_conf 78311788887442---1--48887227789871532 Q gi|254780459|r 7 GTKRTCPDTGKRFY---D--LNKQVIVSPYTQNSWPL 38 (129) Q Consensus 7 G~KR~C~~Cg~KFY---D--lnk~PiiCP~CG~e~~~ 38 (129) -.||.|++||.+.- . .+.....||+||+.|.. T Consensus 32 ~~~r~c~~Cg~~~~~~~~~~~~~~~~~c~~cg~~~~~ 68 (681) T 2pzi_A 32 ESKRFCWNCGRPVGRSDSETKGASEGWCPYCGSPYSF 68 (681) T ss_dssp GGGCBCTTTCCBCSCC-----CCSEEECTTTCCEEEC T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 7676652248957777788887667768889996778 No 19 >2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4 Probab=91.35 E-value=0.1 Score=30.02 Aligned_cols=30 Identities=10% Similarity=0.154 Sum_probs=22.5 Q ss_pred CCCCCCCCCCEEE-ECCCCCCCCCCCCCEEC Q ss_conf 8311788887442-14888722778987153 Q gi|254780459|r 8 TKRTCPDTGKRFY-DLNKQVIVSPYTQNSWP 37 (129) Q Consensus 8 ~KR~C~~Cg~KFY-Dlnk~PiiCP~CG~e~~ 37 (129) .-|-||.|+.-|. +-+-.-++||.||+.|= T Consensus 24 ~~~~CP~C~~~~~~~~~~~~~~C~~C~~~fC 54 (86) T 2ct7_A 24 KFLWCAQCSFGFIYEREQLEATCPQCHQTFC 54 (86) T ss_dssp CEECCSSSCCCEECCCSCSCEECTTTCCEEC T ss_pred CCCCCCCCCCEEEECCCCCEEEECCCCCEEC T ss_conf 9749989994488679999888499999456 No 20 >3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A* Probab=91.22 E-value=0.08 Score=30.75 Aligned_cols=27 Identities=7% Similarity=0.134 Sum_probs=18.9 Q ss_pred CCCCCCCCCEEEECC--------------------CCCCCCCCCCCE Q ss_conf 311788887442148--------------------887227789871 Q gi|254780459|r 9 KRTCPDTGKRFYDLN--------------------KQVIVSPYTQNS 35 (129) Q Consensus 9 KR~C~~Cg~KFYDln--------------------k~PiiCP~CG~e 35 (129) +-.|.+||..|.=-. ..-+.||.||.. T Consensus 70 ~~~C~~Cg~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~CP~Cgs~ 116 (139) T 3a43_A 70 VFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSH 116 (139) T ss_dssp EEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCC T ss_pred EEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 38986789841114200011211122223343234655479197698 No 21 >3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protein structure initiative, midwest center for structural genomics; 2.00A {Nitrosomonas europaea atcc 19718} Probab=91.07 E-value=0.074 Score=30.94 Aligned_cols=30 Identities=13% Similarity=0.277 Sum_probs=21.0 Q ss_pred CCCCCCCCCCCEE-E---EC-CCCCCCCCCCCCEE Q ss_conf 7831178888744-2---14-88872277898715 Q gi|254780459|r 7 GTKRTCPDTGKRF-Y---DL-NKQVIVSPYTQNSW 36 (129) Q Consensus 7 G~KR~C~~Cg~KF-Y---Dl-nk~PiiCP~CG~e~ 36 (129) |.=|-||+||.+. + .- .+.+..||+||..+ T Consensus 1 ~~~~yCp~CG~~~~~~~~~g~~~~~~~C~~C~~~~ 35 (189) T 3cng_A 1 GHMKFCSQCGGEVILRIPEGDTLPRYICPKCHTIH 35 (189) T ss_dssp --CCBCTTTCCBCEEECCTTCSSCEEEETTTTEEE T ss_pred CCCEECCCCCCCCEECCCCCCCCEEEECCCCCCCC T ss_conf 97605846787564034688972475379999760 No 22 >1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; HET: MSE; 2.20A {Escherichia coli K12} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A Probab=90.98 E-value=0.13 Score=29.37 Aligned_cols=31 Identities=10% Similarity=0.279 Sum_probs=19.8 Q ss_pred CCCCCCCCCCEEEEC-CCCCCCCCCCCCEECH Q ss_conf 831178888744214-8887227789871532 Q gi|254780459|r 8 TKRTCPDTGKRFYDL-NKQVIVSPYTQNSWPL 38 (129) Q Consensus 8 ~KR~C~~Cg~KFYDl-nk~PiiCP~CG~e~~~ 38 (129) +.|-|+.||++-.-. +..-..||.||..+=| T Consensus 106 ~~rfC~~CG~~~~~~~~~~~~~C~~C~~~~yP 137 (269) T 1vk6_A 106 SHKYCGYCGHEMYPSKTEWAMLCSHCRERYYP 137 (269) T ss_dssp TTSBCTTTCCBEEECSSSSCEEESSSSCEECC T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC T ss_conf 29868667987743679804889899885688 No 23 >3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc-binding motif, DNA replication; HET: DNA; 2.50A {Saccharomyces cerevisiae} Probab=90.92 E-value=0.08 Score=30.72 Aligned_cols=34 Identities=15% Similarity=0.264 Sum_probs=24.5 Q ss_pred CCCCCCCCCCEEE----------ECCCCCCCCCCCCCEECHHHH Q ss_conf 8311788887442----------148887227789871532331 Q gi|254780459|r 8 TKRTCPDTGKRFY----------DLNKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 8 ~KR~C~~Cg~KFY----------Dlnk~PiiCP~CG~e~~~~~~ 41 (129) .|-+||+||+.|- -+-=..+.||+|+..|.|..+ T Consensus 21 l~l~C~~C~~~~~f~gv~~~~~~~~~~~g~~C~~c~~~~~~~~i 64 (206) T 3flo_B 21 LELSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQLFTPLQL 64 (206) T ss_dssp EEEECTTTCCEEEECSSSCCSSEEEETTEEEETTTCCBCCHHHH T ss_pred EEEECCCCCCCEECCCCCCCCCCCCEECCCCCCCCCCCCCHHHH T ss_conf 78689999985037873036776200476788898995899999 No 24 >2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase/structural protein complex; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B Probab=90.89 E-value=0.092 Score=30.36 Aligned_cols=23 Identities=30% Similarity=0.680 Sum_probs=18.8 Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCE Q ss_conf 8311788887442148887227789871 Q gi|254780459|r 8 TKRTCPDTGKRFYDLNKQVIVSPYTQNS 35 (129) Q Consensus 8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~e 35 (129) .=|.|++||. |=|. -+||.||.. T Consensus 4 ~irkC~~C~~--YTLk---~~CP~CG~~ 26 (60) T 2aus_D 4 RIRKCPKCGR--YTLK---ETCPVCGEK 26 (60) T ss_dssp CCEECTTTCC--EESS---SBCTTTCSB T ss_pred HHHCCCCCCC--EECC---CCCCCCCCC T ss_conf 4114874666--6355---637678785 No 25 >3bvo_A CO-chaperone protein HSCB, mitochondrial precursor; structural genomics medical relevance, protein structure initiative, PSI-2; 3.00A {Homo sapiens} Probab=90.85 E-value=0.098 Score=30.18 Aligned_cols=30 Identities=10% Similarity=0.083 Sum_probs=23.4 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCEECHH Q ss_conf 117888874421488872277898715323 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~ 39 (129) ..|.+||.+--=--...+.||+||+.++|. T Consensus 11 ~~cw~c~~~~~~~~~~~~~C~~c~~~q~~~ 40 (207) T 3bvo_A 11 PRCWNCGGPWGPGREDRFFCPQCRALQAPD 40 (207) T ss_dssp CBCSSSCCBCCSSCSCCCBCTTTCCBCCCC T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 989999898665676575256556679998 No 26 >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Probab=90.36 E-value=0.074 Score=30.95 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=21.6 Q ss_pred CCCCCCCCCCE-----EEECC--CCCCCCCCCCCEE Q ss_conf 83117888874-----42148--8872277898715 Q gi|254780459|r 8 TKRTCPDTGKR-----FYDLN--KQVIVSPYTQNSW 36 (129) Q Consensus 8 ~KR~C~~Cg~K-----FYDln--k~PiiCP~CG~e~ 36 (129) ...+|..|++. |=.+. ...+.||+||... T Consensus 197 ~~~~C~gC~~~l~~~~~~~~~~~~~i~~C~~CgRiL 232 (256) T 3na7_A 197 KKQACGGCFIRLNDKIYTEVLTSGDMITCPYCGRIL 232 (256) T ss_dssp BTTBCTTTCCBCCHHHHHHHHHSSSCEECTTTCCEE T ss_pred ECCCCCCCCCCCCHHHHHHHHCCCCEEECCCCCCEE T ss_conf 599168878243899999988599904898999778 No 27 >2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Neisseria meningitidis Z2491} Probab=90.01 E-value=0.11 Score=30.00 Aligned_cols=30 Identities=30% Similarity=0.533 Sum_probs=25.4 Q ss_pred CCCCCCCCEE-EECCCCCCCCCCCCCEECHH Q ss_conf 1178888744-21488872277898715323 Q gi|254780459|r 10 RTCPDTGKRF-YDLNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 10 R~C~~Cg~KF-YDlnk~PiiCP~CG~e~~~~ 39 (129) -+||.|+.++ |+-++.-++|+.||..|++. T Consensus 9 L~CP~ck~~L~~~~~~~eLvc~~~~~~YPI~ 39 (68) T 2jr6_A 9 LVCPVTKGRLEYHQDKQELWSRQAKLAYPIK 39 (68) T ss_dssp CBCSSSCCBCEEETTTTEEEETTTTEEEEEE T ss_pred HCCCCCCCEEEEECCCCEEECCCCCCCCCCC T ss_conf 0787989872896889989718769656341 No 28 >3ndi_A Methyltransferase; S-adenosylmethionine, kijanose, tetronitrose, tetradeoxysuga micromonospora chalcea, TCAB9, SUGA methylation; HET: SAM TMP; 1.50A {Micromonospora chalcea} PDB: 3ndj_A* Probab=88.55 E-value=0.12 Score=29.67 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=20.8 Q ss_pred CCCCCCCCE---EEECCCCCC---------------------CCCCCCCEE Q ss_conf 117888874---421488872---------------------277898715 Q gi|254780459|r 10 RTCPDTGKR---FYDLNKQVI---------------------VSPYTQNSW 36 (129) Q Consensus 10 R~C~~Cg~K---FYDlnk~Pi---------------------iCP~CG~e~ 36 (129) +.|+-||.+ |++|++.|+ .|..||..+ T Consensus 13 ~~C~iCgs~l~~~l~lg~~P~~~~f~~~~~~~~~~~~~L~l~~C~~Cg~vq 63 (416) T 3ndi_A 13 TACRVCGGGVQEFLDLGRQPLSDRFRKPDELDDEFTYRLAVGRCDSCEMVQ 63 (416) T ss_dssp EECTTTCCEEEEEEEEEEEECTTCCBCTTSCSCCCEEEEEEEEETTTCCEE T ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCHHHCCCCCCCCCEEEECCCCCEEE T ss_conf 899064976633077589986355789246675564563799889998088 No 29 >1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2 Probab=88.50 E-value=0.1 Score=30.11 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=26.3 Q ss_pred HHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEECH Q ss_conf 22278311788887442148887227789871532 Q gi|254780459|r 4 PELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPL 38 (129) Q Consensus 4 ~elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~ 38 (129) .+.+.-|.|..|++.|-+.. --.||.||..|=. T Consensus 10 ~~~~~~~~C~~C~~~f~~~~--~~~C~~Cg~iFC~ 42 (59) T 1z60_A 10 EEYNGERFCYGCQGELKDQH--VYVCAVCQNVFCV 42 (59) T ss_dssp HHHCSCCEETTTTEECTTSE--EECCTTTTCCBCH T ss_pred CCCCCCCCCCCCCCCCCCCC--CEECCCCCCEECC T ss_conf 11699889647698079986--6789889990066 No 30 >1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ... Probab=88.02 E-value=0.3 Score=27.18 Aligned_cols=32 Identities=6% Similarity=0.057 Sum_probs=25.9 Q ss_pred HHCCCCCCCCCCCEEEECCCCCCCCCCCCCEE Q ss_conf 22783117888874421488872277898715 Q gi|254780459|r 5 ELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSW 36 (129) Q Consensus 5 elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~ 36 (129) ..+.+=+|-.||+++-==-++||-|+.||.-+ T Consensus 24 ~~~v~YiCg~Cg~~~~l~~~d~IrC~~CG~RI 55 (70) T 1twf_L 24 TATLKYICAECSSKLSLSRTDAVRCKDCGHRI 55 (70) T ss_dssp -CCCCEECSSSCCEECCCTTSTTCCSSSCCCC T ss_pred CCCEEEECCCCCCCEEECCCCCEECCCCCCEE T ss_conf 85168888679981162899988778488577 No 31 >2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Probab=87.35 E-value=0.28 Score=27.39 Aligned_cols=36 Identities=8% Similarity=-0.003 Sum_probs=26.9 Q ss_pred CCCCCCCCCCEEEE----C-------CCCCCCCCCCCCEECHHHHHC Q ss_conf 83117888874421----4-------888722778987153233101 Q gi|254780459|r 8 TKRTCPDTGKRFYD----L-------NKQVIVSPYTQNSWPLAYFEA 43 (129) Q Consensus 8 ~KR~C~~Cg~KFYD----l-------nk~PiiCP~CG~e~~~~~~~~ 43 (129) .+..|+.||.+||- | +..|..||.||..|.-...++ T Consensus 33 ~~~~C~~C~k~~f~~~~~l~~H~~~h~~~~~~C~~C~k~F~~~~~L~ 79 (96) T 2ctd_A 33 GSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMK 79 (96) T ss_dssp SCEECTTTCSCEESSHHHHHHHHHHHCCCCCCCSSSCCCCSSHHHHH T ss_pred CCEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCHHHHH T ss_conf 89799999935463999999999885897997998599667627799 No 32 >3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Probab=86.78 E-value=0.2 Score=28.25 Aligned_cols=31 Identities=19% Similarity=0.227 Sum_probs=25.6 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCEECHHHHHCCC Q ss_conf 17888874421488872277898715323310123 Q gi|254780459|r 11 TCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEAPT 45 (129) Q Consensus 11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~~~ 45 (129) +||=|..-|+ +|+++++||+.|.-..+.+-- T Consensus 183 ~CPI~~~~m~----dPV~~~~CgHtfer~~I~~~l 213 (267) T 3htk_C 183 TCPITCKPYE----APLISRKCNHVFDRDGIQNYL 213 (267) T ss_dssp BCTTTSSBCS----SEEEESSSCCEEEHHHHHHHS T ss_pred ECCCCCHHHH----CCCCCCCCCCEECHHHHHHHH T ss_conf 8958483876----365448799843799999999 No 33 >3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Probab=86.49 E-value=0.4 Score=26.46 Aligned_cols=33 Identities=21% Similarity=0.107 Sum_probs=27.0 Q ss_pred HHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEE Q ss_conf 222783117888874421488872277898715 Q gi|254780459|r 4 PELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSW 36 (129) Q Consensus 4 ~elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~ 36 (129) ..|...-+|-.||+++-==-++||.|..||.-+ T Consensus 16 ~~~~v~YiCg~Cg~~~~ik~~d~IrCreCG~RI 48 (63) T 3h0g_L 16 RPATMIYLCADCGARNTIQAKEVIRCRECGHRV 48 (63) T ss_dssp ---CCCCBCSSSCCBCCCCSSSCCCCSSSCCCC T ss_pred CCCCEEEECCCCCCCCEECCCCCEECCCCCCEE T ss_conf 887469885358983152899987768488675 No 34 >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, ATP-binding cassette, cytoplasm; HET: ADP; 3.20A {Geobacillus stearothermophilus 10} Probab=86.07 E-value=0.41 Score=26.37 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=24.6 Q ss_pred HCCCCCCCCCCCEEEEC-------CCCCCCCCCCCC-----EECHHHH Q ss_conf 27831178888744214-------888722778987-----1532331 Q gi|254780459|r 6 LGTKRTCPDTGKRFYDL-------NKQVIVSPYTQN-----SWPLAYF 41 (129) Q Consensus 6 lG~KR~C~~Cg~KFYDl-------nk~PiiCP~CG~-----e~~~~~~ 41 (129) +-++..||.||..|..+ |-.-=-||.|.- .|++..+ T Consensus 264 ~s~~~~Cp~~g~~~~e~~p~~FSFNsP~GaCp~C~GlG~~~~iD~~~v 311 (972) T 2r6f_A 264 FSEKHACPYCGFSIGELEPRLFSFNSPFGACPDCDGLGAKLEVDLDLV 311 (972) T ss_dssp EESSEECTTTCCEEECCCGGGGCSSSTTTBCTTTTSCCEEEEECHHHH T ss_pred EEECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEECCHHHC T ss_conf 763046788897056687311687798857834527514020589993 No 35 >2waq_P DNA-directed RNA polymerase RPO12 subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 3hkz_P Probab=85.81 E-value=0.29 Score=27.34 Aligned_cols=28 Identities=25% Similarity=0.301 Sum_probs=21.7 Q ss_pred CCCCCCCCCEEEE--CCCC-CCCCCCCCCEE Q ss_conf 3117888874421--4888-72277898715 Q gi|254780459|r 9 KRTCPDTGKRFYD--LNKQ-VIVSPYTQNSW 36 (129) Q Consensus 9 KR~C~~Cg~KFYD--lnk~-PiiCP~CG~e~ 36 (129) +-.|..||+-|-+ |.+- -|-||+||.-+ T Consensus 3 iY~C~rCg~~~~~~eL~~LP~IrCPyCGfri 33 (48) T 2waq_P 3 VYRCGKCWKTFTDEQLKVLPGVRCPYCGYKI 33 (48) T ss_dssp ---CCCCSSSCCCCCSCCCSSSSCTTTCCCC T ss_pred EEEECCCCCCCCHHHHHHCCCCCCCCCCCEE T ss_conf 8884136778068788457886446357189 No 36 >2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1 Probab=85.80 E-value=0.44 Score=26.18 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=28.0 Q ss_pred CHHHCCCCCCCCCCCEE-EECCCCCCCCCCCCCEECHH Q ss_conf 52227831178888744-21488872277898715323 Q gi|254780459|r 3 KPELGTKRTCPDTGKRF-YDLNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 3 K~elG~KR~C~~Cg~KF-YDlnk~PiiCP~CG~e~~~~ 39 (129) .++|=-=-+||-|+.++ |+-++.-++|+.||..|++. T Consensus 4 d~~LLeiL~CP~~k~~L~~~~~~~~Lvc~~~~~~YPI~ 41 (67) T 2jny_A 4 DPQLLEVLACPKDKGPLRYLESEQLLVNERLNLAYRID 41 (67) T ss_dssp CGGGTCCCBCTTTCCBCEEETTTTEEEETTTTEEEEEE T ss_pred CHHHHHHHCCCCCCCCCEEECCCCEEECCCCCCCCCCC T ss_conf 97999884587989840696889989768768447351 No 37 >2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Probab=84.42 E-value=0.41 Score=26.37 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=22.3 Q ss_pred CCCCCCCCEEEECC---------CCCCCCCCCCCEECHHHHH Q ss_conf 11788887442148---------8872277898715323310 Q gi|254780459|r 10 RTCPDTGKRFYDLN---------KQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 10 R~C~~Cg~KFYDln---------k~PiiCP~CG~e~~~~~~~ 42 (129) -.|+-||..|+-.+ -.|-.||.||..|.-...+ T Consensus 75 y~C~~C~k~F~~~~~L~~H~r~H~~~~~C~~C~k~F~~~~~L 116 (129) T 2wbt_A 75 FVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKKEFTSTDSA 116 (129) T ss_dssp EECTTTCCEESSHHHHHHHHHHTCCCCBCTTTCCBCSSHHHH T ss_pred EECCCCCCCCCCHHHHHHHHEECCCCEECCCCCCEECCHHHH T ss_conf 188999987187446144623037983569998806988899 No 38 >2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 Probab=84.22 E-value=0.36 Score=26.72 Aligned_cols=33 Identities=18% Similarity=0.159 Sum_probs=24.7 Q ss_pred CCHHHCCCC-CCCCCCCEEEECCCCCCCCCCCCCE Q ss_conf 752227831-1788887442148887227789871 Q gi|254780459|r 2 AKPELGTKR-TCPDTGKRFYDLNKQVIVSPYTQNS 35 (129) Q Consensus 2 aK~elG~KR-~C~~Cg~KFYDlnk~PiiCP~CG~e 35 (129) +.++||.=+ .|++|+. .+-+.-.-+.||.||.. T Consensus 161 ~~~~LGVv~A~c~~c~~-~l~~~~~~m~C~~cg~~ 194 (209) T 2nn6_I 161 AENELGVVVAHSESGIQ-MVPISWCEMQCPKTHTK 194 (209) T ss_dssp CSSSCEECCCBCSSSCB-CEEEETTEEECTTTTCC T ss_pred CCCCCEEEEEECCCCCC-CEEECCCEEECCCCCCE T ss_conf 18986899998889985-17766998899999996 No 39 >2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4KFT4, structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens pf-5} SCOP: b.171.1.1 Probab=84.14 E-value=0.35 Score=26.85 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=24.8 Q ss_pred CCCCCCCCE-EEECCCCCCCCCCCCCEECHH Q ss_conf 117888874-421488872277898715323 Q gi|254780459|r 10 RTCPDTGKR-FYDLNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 10 R~C~~Cg~K-FYDlnk~PiiCP~CG~e~~~~ 39 (129) -+||.|+.+ .|+-.+.-++|+.||..|++. T Consensus 9 L~CP~ck~~L~~~~~~~~Lvc~~~~~~YPI~ 39 (69) T 2pk7_A 9 LACPICKGPLKLSADKTELISKGAGLAYPIR 39 (69) T ss_dssp CCCTTTCCCCEECTTSSEEEETTTTEEEEEE T ss_pred HCCCCCCCEEEEECCCCEEECCCCCCEEECC T ss_conf 1687999970696889979769878352330 No 40 >1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1 Probab=84.06 E-value=0.42 Score=26.30 Aligned_cols=28 Identities=14% Similarity=0.166 Sum_probs=23.2 Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCEE Q ss_conf 3117888874421488872277898715 Q gi|254780459|r 9 KRTCPDTGKRFYDLNKQVIVSPYTQNSW 36 (129) Q Consensus 9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e~ 36 (129) .+.|..|++.|-=|.....+|..||.-| T Consensus 55 ~~~C~~C~~~f~~l~~~~~~C~~C~~~v 82 (134) T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKKNV 82 (134) T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEE T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHH T ss_conf 9919364984567678999479999421 No 41 >2j01_5 50S ribosomal protein L32; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: g.41.8.5 PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ... Probab=84.01 E-value=0.44 Score=26.20 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=16.7 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCC Q ss_conf 1178888744214888722778987 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQVIVSPYTQN 34 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~PiiCP~CG~ 34 (129) -.||+||. +-+.=-+||+||. T Consensus 31 ~~C~~CG~----~~~pHrvC~~CG~ 51 (60) T 2j01_5 31 VPCPECKA----MKPPHTVCPECGY 51 (60) T ss_dssp BCCSSSSS----CBCTTCBCTTTCC T ss_pred EECCCCCC----EECCCEECCCCCC T ss_conf 68999997----0267368798981 No 42 >2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50} Probab=83.65 E-value=0.42 Score=26.30 Aligned_cols=32 Identities=16% Similarity=0.355 Sum_probs=25.3 Q ss_pred CCCCCCCCCCEE-EECCCCCCCCCCCCCEECHH Q ss_conf 831178888744-21488872277898715323 Q gi|254780459|r 8 TKRTCPDTGKRF-YDLNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 8 ~KR~C~~Cg~KF-YDlnk~PiiCP~CG~e~~~~ 39 (129) .--+||.|+.++ |+-.+.-++|+.|+..|++. T Consensus 7 ~iL~CP~ck~~L~~~~~~~eLvc~~~~~aYPI~ 39 (70) T 2js4_A 7 DILVCPVCKGRLEFQRAQAELVCNADRLAFPVR 39 (70) T ss_dssp CCCBCTTTCCBEEEETTTTEEEETTTTEEEEEE T ss_pred HHHCCCCCCCEEEEECCCCEEECCCCCCCCCCC T ss_conf 670687999872693889989548648656343 No 43 >2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthesis, NESG, structural genomics, PSI-2; 1.90A {Chromobacterium violaceum atcc 12472} SCOP: b.171.1.1 Probab=83.42 E-value=0.4 Score=26.46 Aligned_cols=30 Identities=17% Similarity=0.409 Sum_probs=24.4 Q ss_pred CCCCCCCCEE-EECCCCCCCCCCCCCEECHH Q ss_conf 1178888744-21488872277898715323 Q gi|254780459|r 10 RTCPDTGKRF-YDLNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 10 R~C~~Cg~KF-YDlnk~PiiCP~CG~e~~~~ 39 (129) -.||.|+.++ |+-++.-++|+.||..|++. T Consensus 9 L~CP~ck~~L~~~~~~~~Lvc~~~~laYPI~ 39 (68) T 2hf1_A 9 LVCPLCKGPLVFDKSKDELICKGDRLAFPIK 39 (68) T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEEEEEE T ss_pred HCCCCCCCEEEEECCCCEEECCCCCCCCCCC T ss_conf 3687989861792889989648879555451 No 44 >1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major} Probab=82.65 E-value=0.77 Score=24.70 Aligned_cols=38 Identities=11% Similarity=-0.068 Sum_probs=28.2 Q ss_pred CCCHHHC---CCCCCCCCCCEEEECCCCCCCCCCCCCEECHH Q ss_conf 9752227---83117888874421488872277898715323 Q gi|254780459|r 1 MAKPELG---TKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 1 MaK~elG---~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~ 39 (129) |.++-|- .-..|+.|+++|- |-+.--.|..||..|=.. T Consensus 10 ~~~~~W~pd~~~~~C~~C~~~F~-~~~rrhhCr~CG~~~C~~ 50 (84) T 1z2q_A 10 QSKGYWQEDEDAPACNGCGCVFT-TTVRRHHCRNCGYVLCGD 50 (84) T ss_dssp CCCSCCCCTTTCCBCTTTCCBCC-TTSCCEECTTTCCEECTG T ss_pred CCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCHH T ss_conf 57675878655881868899626-855574565587982956 No 45 >1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 Probab=82.30 E-value=0.47 Score=26.03 Aligned_cols=31 Identities=16% Similarity=0.169 Sum_probs=20.6 Q ss_pred CCCCCCCCCEEEE------CCC----CCCCCCCCCCEECHH Q ss_conf 3117888874421------488----872277898715323 Q gi|254780459|r 9 KRTCPDTGKRFYD------LNK----QVIVSPYTQNSWPLA 39 (129) Q Consensus 9 KR~C~~Cg~KFYD------lnk----~PiiCP~CG~e~~~~ 39 (129) +-.|..||.+|+- +.+ ....||.||...-|. T Consensus 144 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~p~C~~Cgg~lrP~ 184 (361) T 1q14_A 144 HCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELVKPA 184 (361) T ss_dssp EEEETTTCCEECTHHHHHHTTSSSCSCCCBCTTTCCBEEEE T ss_pred EEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCC T ss_conf 45778899818989998776426766687887778742687 No 46 >3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A Probab=82.16 E-value=0.73 Score=24.85 Aligned_cols=35 Identities=11% Similarity=0.270 Sum_probs=25.7 Q ss_pred CCCHHHCC-CCCCCCCCCEEEECCCCCCCCCCCCCEE Q ss_conf 97522278-3117888874421488872277898715 Q gi|254780459|r 1 MAKPELGT-KRTCPDTGKRFYDLNKQVIVSPYTQNSW 36 (129) Q Consensus 1 MaK~elG~-KR~C~~Cg~KFYDlnk~PiiCP~CG~e~ 36 (129) ++.++||. +-.|++||.--. ....-+.||.||..- T Consensus 131 t~~~~LGVv~a~c~~c~~~l~-~~~~~~~C~~cg~~e 166 (179) T 3m7n_A 131 TKEEEMGVLRALCSNCKTEMV-REGDILKCPECGRVE 166 (179) T ss_dssp CCSTTCEEEECBCTTTCCBCE-ECSSSEECSSSCCEE T ss_pred ECCCCCCEEEEECCCCCCEEE-EECCEEECCCCCCEE T ss_conf 628888579996787786077-709999999999878 No 47 >2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8 Probab=82.09 E-value=0.61 Score=25.32 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=21.5 Q ss_pred CCCCCCCCCCE-EEECCCCCCCCCCCCC-EE Q ss_conf 83117888874-4214888722778987-15 Q gi|254780459|r 8 TKRTCPDTGKR-FYDLNKQVIVSPYTQN-SW 36 (129) Q Consensus 8 ~KR~C~~Cg~K-FYDlnk~PiiCP~CG~-e~ 36 (129) ++|.||.||.= |-=-.++-..|=+||- +| T Consensus 17 ~~k~CP~CG~GvFmA~H~dR~~CGKCgyTef 47 (55) T 2k4x_A 17 KHRFCPRCGPGVFLAEHADRYSCGRCGYTEF 47 (55) T ss_dssp SSCCCTTTTTTCCCEECSSEEECTTTCCCEE T ss_pred ECCCCCCCCCCEEEEECCCCCCCCCCCCEEE T ss_conf 3375989999477200589756367554488 No 48 >2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A Probab=81.84 E-value=0.7 Score=24.96 Aligned_cols=29 Identities=10% Similarity=0.187 Sum_probs=24.6 Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCEEC Q ss_conf 831178888744214888722778987153 Q gi|254780459|r 8 TKRTCPDTGKRFYDLNKQVIVSPYTQNSWP 37 (129) Q Consensus 8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~ 37 (129) .-+.|..|+++|- |.+..-.|..||..|= T Consensus 18 ~~~~C~~C~~~F~-~~~rrhhCr~CG~~~C 46 (82) T 2yw8_A 18 EATHCRQCEKEFS-ISRRKHHCRNCGHIFC 46 (82) T ss_dssp CCCBCTTTCCBCB-TTBCCEECTTTCCEEC T ss_pred CCCCCCCCCCCCC-CCCCCCCCCCCCCEEC T ss_conf 4786926498141-7555633531694627 No 49 >2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Probab=81.78 E-value=0.59 Score=25.43 Aligned_cols=35 Identities=9% Similarity=0.071 Sum_probs=26.5 Q ss_pred CCCCCCCCCEEEEC-----------CCCCCCCCCCCCEECHHHHHC Q ss_conf 31178888744214-----------888722778987153233101 Q gi|254780459|r 9 KRTCPDTGKRFYDL-----------NKQVIVSPYTQNSWPLAYFEA 43 (129) Q Consensus 9 KR~C~~Cg~KFYDl-----------nk~PiiCP~CG~e~~~~~~~~ 43 (129) .-+|+.||..|.-- +..|-.||.||..|.-...+. T Consensus 2 pf~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~F~~~~~l~ 47 (60) T 2adr_A 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLI 47 (60) T ss_dssp CBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHH T ss_pred CCCCCCCCCEECCHHHHHHHHHHCCCCCCEECCCCCCEECCHHHHH T ss_conf 4718988888098999999975506788847898989948889999 No 50 >3glr_A NAD-dependent deacetylase sirtuin-3, mitochondrial; NAD dependent deacetylase, sirtuin, substrate peptide complex, hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A Probab=81.39 E-value=0.41 Score=26.41 Aligned_cols=31 Identities=16% Similarity=0.195 Sum_probs=22.3 Q ss_pred CCCCCCCCCEEEE-------CCCCCCCCCCCCCEECHH Q ss_conf 3117888874421-------488872277898715323 Q gi|254780459|r 9 KRTCPDTGKRFYD-------LNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 9 KR~C~~Cg~KFYD-------lnk~PiiCP~CG~e~~~~ 39 (129) +-.|..|+.+|-- +...+..||.||...-|. T Consensus 139 ~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~Cgg~lrP~ 176 (285) T 3glr_A 139 SATCTVCQRPFPGEDIRADVMADRVPRCPVCTGVVKPD 176 (285) T ss_dssp EEEETTTCCEEEGGGGHHHHHTTCCCBCTTTCCBEEEE T ss_pred EEEECCCCCCCCCHHHEEEECCCCCCCCCCCCCCEEEE T ss_conf 56858989985321320010267789860126722100 No 51 >2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=80.91 E-value=0.22 Score=28.04 Aligned_cols=36 Identities=11% Similarity=0.105 Sum_probs=25.5 Q ss_pred CCCCCCCCCCEEEE----CCC---------CCCCCCCCCCEECHHHHHC Q ss_conf 83117888874421----488---------8722778987153233101 Q gi|254780459|r 8 TKRTCPDTGKRFYD----LNK---------QVIVSPYTQNSWPLAYFEA 43 (129) Q Consensus 8 ~KR~C~~Cg~KFYD----lnk---------~PiiCP~CG~e~~~~~~~~ 43 (129) .+.+|+.||.+||- |.+ .|-.|+.||..|.-...++ T Consensus 23 ~~~~C~~C~k~~~~~~~~L~~H~~~~h~~~~~~~C~~C~k~F~~~~~L~ 71 (98) T 2gqj_A 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLN 71 (98) T ss_dssp SCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHH T ss_pred CCEECCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHH T ss_conf 8989999997305589999999998628988999919798018469999 No 52 >1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A Probab=80.61 E-value=0.82 Score=24.54 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=22.8 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCEEC Q ss_conf 1178888744214888722778987153 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQVIVSPYTQNSWP 37 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~ 37 (129) ..|+.|+++|= |-+.-..|-.||..|= T Consensus 70 ~~C~~C~~~Fs-~~~rkhhCr~CG~i~C 96 (125) T 1joc_A 70 QNCMACGKGFS-VTVRRHHCRQCGNIFC 96 (125) T ss_dssp CBCTTTCCBCC-SSSCCEECTTTCCEEC T ss_pred CCCCCCCCCCC-CCCCCCCCCCCCCEEC T ss_conf 70757597456-8778937523687049 No 53 >1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1 Probab=80.51 E-value=0.58 Score=25.46 Aligned_cols=33 Identities=12% Similarity=0.242 Sum_probs=26.8 Q ss_pred HHCCCCCCCCCCCEEEECCCCCCCCCCCCCEECH Q ss_conf 2278311788887442148887227789871532 Q gi|254780459|r 5 ELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPL 38 (129) Q Consensus 5 elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~ 38 (129) -+++...|..||++|= |-+..-.|-.||..|=- T Consensus 15 P~~~~~~C~~C~~~F~-~~~Rkh~Cr~Cg~~fC~ 47 (120) T 1y02_A 15 PTGLEPSCKSCGAHFA-NTARKQTCLDCKKNFCM 47 (120) T ss_dssp -----CCCTTTCCCCS-SGGGCEECTTTCCEECG T ss_pred CCCCCCCCCCCCCCCC-CCCCCCCCCCCCCEECC T ss_conf 9202698714291001-87775423358987630 No 54 >1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Probab=79.78 E-value=0.8 Score=24.61 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=26.5 Q ss_pred CCCCCCCCCEEEEC-----------CCCCCCCCCCCCEECHHHHH Q ss_conf 31178888744214-----------88872277898715323310 Q gi|254780459|r 9 KRTCPDTGKRFYDL-----------NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 9 KR~C~~Cg~KFYDl-----------nk~PiiCP~CG~e~~~~~~~ 42 (129) |=.|+-||..|... +..|-.|+.||..|.-...+ T Consensus 1 ry~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~L 45 (57) T 1bbo_A 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNL 45 (57) T ss_dssp CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHH T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCCEECCCCCCEECCHHHH T ss_conf 932688999178599999999870999870689998886878899 No 55 >1j8f_A SIRT2, sirtuin 2, isoform 1, silencing; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5 Probab=79.64 E-value=0.57 Score=25.53 Aligned_cols=31 Identities=16% Similarity=0.131 Sum_probs=21.2 Q ss_pred CCCCCCCCCEE-EEC--------CCCCCCCCCCCCEECHH Q ss_conf 31178888744-214--------88872277898715323 Q gi|254780459|r 9 KRTCPDTGKRF-YDL--------NKQVIVSPYTQNSWPLA 39 (129) Q Consensus 9 KR~C~~Cg~KF-YDl--------nk~PiiCP~CG~e~~~~ 39 (129) +-.|.+|+.++ |++ ...+..||.||..+-|. T Consensus 159 ~~~C~~c~~~~~~~~~~~~~~~~~~~~p~C~~Cgg~lKPd 198 (323) T 1j8f_A 159 TSHCVSASCRHEYPLSWMKEKIFSEVTPKCEDCQSLVKPD 198 (323) T ss_dssp EEEESCTTTCCEECHHHHHHHHHTTCCCBCTTTCCBEEEE T ss_pred EEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCEECCC T ss_conf 2566378887555326666664047898886789802785 No 56 >2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Probab=79.32 E-value=0.75 Score=24.80 Aligned_cols=30 Identities=23% Similarity=0.546 Sum_probs=24.1 Q ss_pred HHCC-CCCCCCCCCEEEECCCCCCCCCC--CCC Q ss_conf 2278-31178888744214888722778--987 Q gi|254780459|r 5 ELGT-KRTCPDTGKRFYDLNKQVIVSPY--TQN 34 (129) Q Consensus 5 elG~-KR~C~~Cg~KFYDlnk~PiiCP~--CG~ 34 (129) +.|- +++|+.||+.|+=++..--+|+- |+. T Consensus 15 ~~g~~r~~c~~c~~~fw~~~~~r~~c~d~~c~~ 47 (739) T 2ztg_A 15 ENGFVRKRCPKCGKHFWTADPEREICGDPPCES 47 (739) T ss_dssp TTTCEEECCCSSSSCEEECCSSCCCCCSSSSCC T ss_pred HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 569152347545785004698857799899988 No 57 >1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; HET: MSE; 2.20A {Escherichia coli K12} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A Probab=79.17 E-value=0.26 Score=27.57 Aligned_cols=28 Identities=14% Similarity=0.292 Sum_probs=20.9 Q ss_pred HHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEE Q ss_conf 222783117888874421488872277898715 Q gi|254780459|r 4 PELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSW 36 (129) Q Consensus 4 ~elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~ 36 (129) .+-|.+|.|++||..+| |-+.|.+...+ T Consensus 120 ~~~~~~~~C~~C~~~~y-----P~~~p~vivli 147 (269) T 1vk6_A 120 SKTEWAMLCSHCRERYY-----PQIAPCIIVAI 147 (269) T ss_dssp CSSSSCEEESSSSCEEC-----CCCEEEEEEEE T ss_pred CCCCEEEECCCCCCCCC-----CCCCCEEEEEE T ss_conf 67980488989988568-----87686599999 No 58 >2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 1nwy_Z* 1nwx_Z* 1xbp_Z* 1pnu_Z ... Probab=79.09 E-value=0.64 Score=25.20 Aligned_cols=21 Identities=14% Similarity=0.253 Sum_probs=15.9 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCC Q ss_conf 1178888744214888722778987 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQVIVSPYTQN 34 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~PiiCP~CG~ 34 (129) -.||+||. +-+.=-+||.||. T Consensus 31 ~~C~~cG~----~~~~H~vc~~CG~ 51 (60) T 2zjr_Z 31 TECPQCHG----KKLSHHICPNCGY 51 (60) T ss_dssp EECTTTCC----EECTTBCCTTTCB T ss_pred EECCCCCC----CCCCCEECCCCCC T ss_conf 68899998----6367267798980 No 59 >1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4 Probab=79.03 E-value=1.6 Score=22.76 Aligned_cols=29 Identities=14% Similarity=0.244 Sum_probs=23.0 Q ss_pred CCCCCCCCCCEEEECCC--CCCCCCCCCCEE Q ss_conf 83117888874421488--872277898715 Q gi|254780459|r 8 TKRTCPDTGKRFYDLNK--QVIVSPYTQNSW 36 (129) Q Consensus 8 ~KR~C~~Cg~KFYDlnk--~PiiCP~CG~e~ 36 (129) .|-.||.|+.-=-=|.+ +++.|..||+.+ T Consensus 6 ~~VkCp~C~n~qiVFShA~t~V~C~~Cgt~L 36 (66) T 1qxf_A 6 VKVKCPDCEHEQVIFDHPSTIVKCIICGRTV 36 (66) T ss_dssp EEEECTTTCCEEEEESSCSSCEECSSSCCEE T ss_pred EEEECCCCCCEEEEEECCCCEEECCCCCCEE T ss_conf 8849999997157981698168851228777 No 60 >1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A* Probab=78.71 E-value=0.95 Score=24.15 Aligned_cols=32 Identities=6% Similarity=-0.045 Sum_probs=21.5 Q ss_pred CCCCCCCCCEEEE---CC-CCCCCCCCCCCEECHHH Q ss_conf 3117888874421---48-88722778987153233 Q gi|254780459|r 9 KRTCPDTGKRFYD---LN-KQVIVSPYTQNSWPLAY 40 (129) Q Consensus 9 KR~C~~Cg~KFYD---ln-k~PiiCP~CG~e~~~~~ 40 (129) +-.|+.|+.+|.= .. .....||.||...-|.. T Consensus 121 ~~~C~~c~~~~~~~~~~~~~~~P~C~~Cgg~lrP~V 156 (249) T 1m2k_A 121 VVRCTSCNNSFEVESAPKIPPLPKCDKCGSLLRPGV 156 (249) T ss_dssp EEEESSSSCEEECSSCCCSSSCCBCSSSSSBEEEEE T ss_pred EEEECCCCCEEEHHHHCCCCCCCCCCCCCCCCCCCE T ss_conf 579899898422122011689998656899857878 No 61 >2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Probab=78.31 E-value=0.86 Score=24.41 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=23.0 Q ss_pred HHCC-CCCCCCCCCEEEECCCCCCCCC--CCCC Q ss_conf 2278-3117888874421488872277--8987 Q gi|254780459|r 5 ELGT-KRTCPDTGKRFYDLNKQVIVSP--YTQN 34 (129) Q Consensus 5 elG~-KR~C~~Cg~KFYDlnk~PiiCP--~CG~ 34 (129) +.|- +++|+.||..|+=++..--+|+ -|+. T Consensus 12 ~~g~~r~~c~~c~~~fw~~~~~~~~c~d~~c~~ 44 (752) T 2zze_A 12 EEGWIRXXCXVCGXPFWTLDPDRETCGDPPCDE 44 (752) T ss_dssp HTTCEEEECTTTCCEEEESCTTCCSCSSTTTSC T ss_pred HCCCEEEECCCCCCCEECCCCCCCCCCCCCCCC T ss_conf 669355200136873004799867789899977 No 62 >2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} SCOP: b.40.4.15 PDB: 3irb_A Probab=77.78 E-value=0.75 Score=24.80 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=17.7 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCE Q ss_conf 11788887442148887227789871 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQVIVSPYTQNS 35 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~PiiCP~CG~e 35 (129) +.|.+||+.||==. + +||.||.. T Consensus 48 ~rC~~Cg~~~~Ppr--~-~Cp~C~s~ 70 (145) T 2gnr_A 48 SKCSKCGRIFVPAR--S-YCEHCFVK 70 (145) T ss_dssp EECTTTCCEEESCC--S-EETTTTEE T ss_pred EECCCCCCEEECCC--C-CCCCCCCC T ss_conf 98799995883960--1-17799998 No 63 >1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A* Probab=77.41 E-value=0.91 Score=24.28 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=20.7 Q ss_pred CCCCCCCCCEEEE------CC----CCCCCCCCCCCEECHH Q ss_conf 3117888874421------48----8872277898715323 Q gi|254780459|r 9 KRTCPDTGKRFYD------LN----KQVIVSPYTQNSWPLA 39 (129) Q Consensus 9 KR~C~~Cg~KFYD------ln----k~PiiCP~CG~e~~~~ 39 (129) +-.|.+|+.+|.- +. +....||.||...-|. T Consensus 136 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~p~C~~Cgg~lrP~ 176 (289) T 1q1a_A 136 HCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELVKPA 176 (289) T ss_dssp EEEETTTCCEECHHHHHHHHTCSSCCSCCBCTTTCCBEEEE T ss_pred CCEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCC T ss_conf 21658999828889998766426766688777768887761 No 64 >2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=77.26 E-value=0.73 Score=24.84 Aligned_cols=29 Identities=14% Similarity=0.174 Sum_probs=22.5 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCEECHHHHH Q ss_conf 117888874421488872277898715323310 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~ 42 (129) -+||=|..-|.| |+++|.||+.|--.-+. T Consensus 8 l~CpIc~~~~~d----PV~~~~CgH~fcr~cI~ 36 (94) T 2yu4_A 8 FTCPITKEEMKK----PVKNKVCGHTYEEDAIV 36 (94) T ss_dssp CBCTTTCSBCSS----EEEESSSCCEEEHHHHH T ss_pred CCCCCCCCHHHC----CCCCCCCCCHHHHHHHH T ss_conf 499251947548----86768784556199999 No 65 >1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=77.24 E-value=1.1 Score=23.66 Aligned_cols=28 Identities=18% Similarity=0.174 Sum_probs=22.9 Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCEEC Q ss_conf 31178888744214888722778987153 Q gi|254780459|r 9 KRTCPDTGKRFYDLNKQVIVSPYTQNSWP 37 (129) Q Consensus 9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~ 37 (129) -..|..|+++|- |-+..-.|-.||..|= T Consensus 14 ~~~C~~C~~~F~-~~~rrhhCr~CG~v~C 41 (84) T 1x4u_A 14 FGNCTGCSATFS-VLKKRRSCSNCGNSFC 41 (84) T ss_dssp CSSCSSSCCCCC-SSSCCEECSSSCCEEC T ss_pred CCCCCCCCCEEC-CCCCCCCCCCCCCEEC T ss_conf 397758689002-8756776666898589 No 66 >3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei} Probab=77.09 E-value=1.3 Score=23.25 Aligned_cols=29 Identities=14% Similarity=0.082 Sum_probs=20.9 Q ss_pred CCCCCCCCCEEE--------ECCCCCCCCCCCCCEEC Q ss_conf 311788887442--------14888722778987153 Q gi|254780459|r 9 KRTCPDTGKRFY--------DLNKQVIVSPYTQNSWP 37 (129) Q Consensus 9 KR~C~~Cg~KFY--------Dlnk~PiiCP~CG~e~~ 37 (129) ...|++|+..+- +.++.-..||+||.... T Consensus 78 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~cg~~~~ 114 (166) T 3ir9_A 78 TTKCSVCGYENKWTRRWKPGEPAPAAGNCPKCGSSLE 114 (166) T ss_dssp EEEESSSSCEEEEEECCCC--CCCCCCBCTTTCCBEE T ss_pred EEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHH T ss_conf 9975898744778761354223333456854463021 No 67 >3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* Probab=76.89 E-value=1.1 Score=23.82 Aligned_cols=29 Identities=17% Similarity=0.579 Sum_probs=22.0 Q ss_pred CCCCCCCCCCCEEEECCCC---CCCCCCCCCEEC Q ss_conf 7831178888744214888---722778987153 Q gi|254780459|r 7 GTKRTCPDTGKRFYDLNKQ---VIVSPYTQNSWP 37 (129) Q Consensus 7 G~KR~C~~Cg~KFYDlnk~---PiiCP~CG~e~~ 37 (129) -.|++||.||.. -+.|. -=.|.+||..|. T Consensus 58 ~aky~CpfCgk~--~vkR~a~GIW~C~kCg~~~A 89 (116) T 3cc2_Z 58 NEDHACPNCGED--RVDRQGTGIWQCSYCDYKFT 89 (116) T ss_dssp HSCEECSSSCCE--EEEEEETTEEEETTTCCEEE T ss_pred CCCCCCCCCCCC--CEEEEEEEEEECCCCCCEEE T ss_conf 079609888998--03889989987489898885 No 68 >3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Probab=76.63 E-value=1.9 Score=22.27 Aligned_cols=30 Identities=13% Similarity=0.164 Sum_probs=21.9 Q ss_pred CCCCCCCCEEEEC----CC-CCCCCCCCCCEECHH Q ss_conf 1178888744214----88-872277898715323 Q gi|254780459|r 10 RTCPDTGKRFYDL----NK-QVIVSPYTQNSWPLA 39 (129) Q Consensus 10 R~C~~Cg~KFYDl----nk-~PiiCP~CG~e~~~~ 39 (129) |-||.||.-.|=. ++ --..|+.||.++... T Consensus 5 ~FCp~C~nmL~~~~~~~~~~l~~~C~~C~y~~~~~ 39 (113) T 3h0g_I 5 QYCIECNNMLYPREDKVDRVLRLACRNCDYSEIAA 39 (113) T ss_dssp CCCSSSCCCCEECCCTTTCCCCEECSSSCCEECCS T ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC T ss_conf 87746574663646898868889899998310068 No 69 >2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Probab=76.56 E-value=1.4 Score=23.17 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=19.1 Q ss_pred CCCCCCCEEEEC-----------CCCCCCCCCCCCEECHHH Q ss_conf 178888744214-----------888722778987153233 Q gi|254780459|r 11 TCPDTGKRFYDL-----------NKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 11 ~C~~Cg~KFYDl-----------nk~PiiCP~CG~e~~~~~ 40 (129) .|+.||.+|... +..|-.||.||..|.-.. T Consensus 9 ~C~~C~k~F~~~~~l~~H~~~H~~~~~~~C~~C~~~f~~~~ 49 (95) T 2yt9_A 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKD 49 (95) T ss_dssp ECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHH T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCH T ss_conf 99999878398999999998718998853688887421246 No 70 >1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1 Probab=76.45 E-value=1.4 Score=23.14 Aligned_cols=35 Identities=11% Similarity=0.076 Sum_probs=27.0 Q ss_pred CHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEECH Q ss_conf 522278311788887442148887227789871532 Q gi|254780459|r 3 KPELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPL 38 (129) Q Consensus 3 K~elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~ 38 (129) .|.|=-=..|..|+++| -|-+..-.|-.||..|=. T Consensus 5 pp~W~~~~~C~~C~~~F-~~~~rkhhCr~Cg~~~C~ 39 (73) T 1vfy_A 5 PADWIDSDACMICSKKF-SLLNRKHHCRSCGGVFCQ 39 (73) T ss_dssp --CCCCCSBCTTTCCBC-BTTBCCEECTTTCCEECG T ss_pred CCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCEECH T ss_conf 88887896445789805-175556357579988491 No 71 >1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Probab=76.12 E-value=1.4 Score=23.10 Aligned_cols=33 Identities=12% Similarity=0.140 Sum_probs=24.4 Q ss_pred CCCCCCCCEEEEC---------------CCCCCCCCCCCCEECHHHHH Q ss_conf 1178888744214---------------88872277898715323310 Q gi|254780459|r 10 RTCPDTGKRFYDL---------------NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 10 R~C~~Cg~KFYDl---------------nk~PiiCP~CG~e~~~~~~~ 42 (129) -.|+.||..|.-. .+.|..|+.||..|.-...+ T Consensus 16 ~~C~~C~k~F~~~~~L~~H~~~~h~~~~~~~~~~C~~C~k~F~~~~~L 63 (86) T 1x6h_A 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTM 63 (86) T ss_dssp EECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHH T ss_pred EECCCCCCEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCHHHH T ss_conf 058999885166265888878863776567787168879662679999 No 72 >2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1 Probab=76.08 E-value=1.3 Score=23.32 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=18.7 Q ss_pred CCCCCCCCEEEECCCCC---CCCCCCC Q ss_conf 11788887442148887---2277898 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQV---IVSPYTQ 33 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~P---iiCP~CG 33 (129) ..|..||..|-=-+-.| .+||-|. T Consensus 135 ~~C~~Cgg~fv~~~~~~~~~f~C~lC~ 161 (192) T 2avu_E 135 SSCNCCGGNFITHAHQPVGSFACSLCQ 161 (192) T ss_dssp EECTTTCCEEEEESSCCSSCCCCTTC- T ss_pred CCCCCCCCCEECCCCCCCCCCCCCCCC T ss_conf 657878995155666667687389999 No 73 >1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11 Probab=75.90 E-value=1.3 Score=23.38 Aligned_cols=28 Identities=7% Similarity=-0.009 Sum_probs=20.9 Q ss_pred CCCCCCCCEEEEC-----CCCCCCCCCCCC-EEC Q ss_conf 1178888744214-----888722778987-153 Q gi|254780459|r 10 RTCPDTGKRFYDL-----NKQVIVSPYTQN-SWP 37 (129) Q Consensus 10 R~C~~Cg~KFYDl-----nk~PiiCP~CG~-e~~ 37 (129) -.|+.||..++-. -+.|-.||.||. .|. T Consensus 135 ~~C~~C~~~~~~~~~~~~~~~p~~c~~C~~~~f~ 168 (279) T 1ltl_A 135 FECRGCMRHHAVTQSTNMITEPSLCSECGGRSFR 168 (279) T ss_dssp EEETTTCCEEEEECSSSSCCCCSCCTTTCCCCEE T ss_pred EECCCCCCEEEEECCCCCCCCCCCCCCCCCCCEE T ss_conf 9958888558885178812488768777885327 No 74 >2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Probab=75.73 E-value=1.4 Score=23.12 Aligned_cols=34 Identities=12% Similarity=0.169 Sum_probs=26.3 Q ss_pred CCCCCCCCCEEEEC-----------CCCCCCCCCCCCEECHHHHH Q ss_conf 31178888744214-----------88872277898715323310 Q gi|254780459|r 9 KRTCPDTGKRFYDL-----------NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 9 KR~C~~Cg~KFYDl-----------nk~PiiCP~CG~e~~~~~~~ 42 (129) .-.|+.||..|... +..|-.|+.||..|.-...+ T Consensus 18 ~~~C~~C~~~f~~~~~l~~H~~~H~~~~~y~C~~C~k~F~~~~~L 62 (77) T 2cot_A 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHL 62 (77) T ss_dssp SSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHH T ss_pred CCCCCCCCCEECCHHHHHHHHHHHCCCCCCCCCCCCCEECCHHHH T ss_conf 808999999858766748999860788887589888861888999 No 75 >2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.10A {Pseudomonas aeruginosa PAO1} SCOP: e.59.1.1 Probab=75.12 E-value=1.1 Score=23.76 Aligned_cols=35 Identities=14% Similarity=0.290 Sum_probs=20.2 Q ss_pred HHHCCCCCCCCCCCEE--EEC-------CCCCCCCCCCCCEECH Q ss_conf 2227831178888744--214-------8887227789871532 Q gi|254780459|r 4 PELGTKRTCPDTGKRF--YDL-------NKQVIVSPYTQNSWPL 38 (129) Q Consensus 4 ~elG~KR~C~~Cg~KF--YDl-------nk~PiiCP~CG~e~~~ 38 (129) ++.+.+..||-||..= ==+ ++.=..|.-||++|.- T Consensus 177 ~~~~~~g~CPvCGs~P~~s~l~~~~~~~G~R~L~CslC~teW~~ 220 (309) T 2fiy_A 177 VETESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHY 220 (309) T ss_dssp CCCTTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEEC T ss_pred CCCCCCCCCCCCCCCCHHHEEECCCCCCCCEEEECCCCCCCCCE T ss_conf 77766994999998031032423687778568876888884520 No 76 >1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Probab=75.02 E-value=1.4 Score=23.21 Aligned_cols=33 Identities=6% Similarity=0.021 Sum_probs=25.4 Q ss_pred CCCCCCCCEEEEC-----------CCCCCCCCCCCCEECHHHHH Q ss_conf 1178888744214-----------88872277898715323310 Q gi|254780459|r 10 RTCPDTGKRFYDL-----------NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 10 R~C~~Cg~KFYDl-----------nk~PiiCP~CG~e~~~~~~~ 42 (129) -.|+.||..|.-. +..|-.||.||..|.-...+ T Consensus 4 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k~f~~~~~l 47 (88) T 1llm_C 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDER 47 (88) T ss_dssp EECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHH T ss_pred CCCCCCCCEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH T ss_conf 12999986509799999999980899877554444544788999 No 77 >2zkr_z 60S ribosomal protein L37A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1ysh_D Probab=74.24 E-value=0.76 Score=24.74 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=21.7 Q ss_pred CCCCCCCCCCEEEECCCCC---CCCCCCCCEECH Q ss_conf 8311788887442148887---227789871532 Q gi|254780459|r 8 TKRTCPDTGKRFYDLNKQV---IVSPYTQNSWPL 38 (129) Q Consensus 8 ~KR~C~~Cg~KFYDlnk~P---iiCP~CG~e~~~ 38 (129) .|++||.||.. -+.|.- -.|.+||..|.- T Consensus 35 ~ky~Cp~Cgk~--~vkR~a~GIW~C~kC~~~~AG 66 (92) T 2zkr_z 35 AKYTCSFCGKT--KMKRRAVGIWHCGSCMKTVAG 66 (92) T ss_dssp SCBCCSSSCSS--CEEEEETTEEEETTTCCEEEC T ss_pred CCCCCCCCCCC--EEEEEEEEEEECCCCCCEEEC T ss_conf 78509999998--778899888684799998856 No 78 >2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor} Probab=73.37 E-value=1.3 Score=23.36 Aligned_cols=32 Identities=9% Similarity=0.097 Sum_probs=23.5 Q ss_pred CCCCCCCCCCE-EEECCCCCCCCCCCCCEECHH Q ss_conf 83117888874-421488872277898715323 Q gi|254780459|r 8 TKRTCPDTGKR-FYDLNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 8 ~KR~C~~Cg~K-FYDlnk~PiiCP~CG~e~~~~ 39 (129) .=-.||-|+.+ .|+=...-.+|+.||-.|++. T Consensus 9 ~iL~CP~ck~~L~~~~~~~~L~c~~~~laYPI~ 41 (56) T 2kpi_A 9 EILACPACHAPLEERDAELICTGQDCGLAYPVR 41 (56) T ss_dssp TSCCCSSSCSCEEEETTEEEECSSSCCCEEEEE T ss_pred HHHCCCCCCCCCEECCCCCEEECCCCCEEEECC T ss_conf 773388999945182876889738888354450 No 79 >2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Probab=73.16 E-value=1.8 Score=22.44 Aligned_cols=34 Identities=15% Similarity=-0.000 Sum_probs=25.1 Q ss_pred CCCCCCCCCEEEEC-------------CCCCCCCCCCCCEECHHHHH Q ss_conf 31178888744214-------------88872277898715323310 Q gi|254780459|r 9 KRTCPDTGKRFYDL-------------NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 9 KR~C~~Cg~KFYDl-------------nk~PiiCP~CG~e~~~~~~~ 42 (129) .-.|+.|+.+|.-. +..|..||.|+..|.-...+ T Consensus 15 py~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L 61 (77) T 2ct1_A 15 PYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61 (77) T ss_dssp SEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHH T ss_pred CCCCCCCCCCCCCHHHHHHEEEEEECCCCCCEECCCCCCEECCHHHH T ss_conf 80897999701405754321664304687170898999983999999 No 80 >1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Probab=73.11 E-value=1.7 Score=22.66 Aligned_cols=34 Identities=12% Similarity=0.070 Sum_probs=26.1 Q ss_pred CCCCCCCCCEEEEC-----------CCCCCCCCCCCCEECHHHHH Q ss_conf 31178888744214-----------88872277898715323310 Q gi|254780459|r 9 KRTCPDTGKRFYDL-----------NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 9 KR~C~~Cg~KFYDl-----------nk~PiiCP~CG~e~~~~~~~ 42 (129) .-.|+-|+..|... +..|-.|+.||..|.-...+ T Consensus 14 py~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L 58 (72) T 1x6e_A 14 PYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGL 58 (72) T ss_dssp CEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHH T ss_pred CCCCCCCCCEECCHHHHHHHHHHHCCCCCEECCCCCCCCCCHHHH T ss_conf 817999988739899999999873688463889898960888999 No 81 >2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Probab=73.00 E-value=1.7 Score=22.66 Aligned_cols=29 Identities=17% Similarity=0.295 Sum_probs=16.4 Q ss_pred CCCCCCCEEEEC-----------CCCCCCCCCCCCEECHH Q ss_conf 178888744214-----------88872277898715323 Q gi|254780459|r 11 TCPDTGKRFYDL-----------NKQVIVSPYTQNSWPLA 39 (129) Q Consensus 11 ~C~~Cg~KFYDl-----------nk~PiiCP~CG~e~~~~ 39 (129) .|+.||..|... +..|..||.|+..|.-. T Consensus 3 ~C~~C~k~F~~~~~l~~H~~~H~~~~~~~C~~C~~~f~~~ 42 (82) T 2kmk_A 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQK 42 (82) T ss_dssp ECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSH T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCCCH T ss_conf 8899988849899999999970899886489889754425 No 82 >2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Probab=72.48 E-value=1.3 Score=23.34 Aligned_cols=32 Identities=16% Similarity=0.339 Sum_probs=20.3 Q ss_pred CCCCCCCEEEE------------CCCCCCCCCC--CCCEECHHHHH Q ss_conf 17888874421------------4888722778--98715323310 Q gi|254780459|r 11 TCPDTGKRFYD------------LNKQVIVSPY--TQNSWPLAYFE 42 (129) Q Consensus 11 ~C~~Cg~KFYD------------lnk~PiiCP~--CG~e~~~~~~~ 42 (129) .|+.||+.|.. .+..|..||. ||..|.-...+ T Consensus 11 ~~~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~~~C~k~F~~~~~L 56 (79) T 2dlk_A 11 DFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHL 56 (79) T ss_dssp SSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHH T ss_pred CCCCCCCEECCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHH T ss_conf 8899989819889998757323699987137889989723778899 No 83 >3jwp_A Transcriptional regulatory protein SIR2 homologue; malaria, transcription regulation, structural genomics, structural genomics consortium; HET: AMP PGE; 2.65A {Plasmodium falciparum} Probab=72.19 E-value=1.6 Score=22.80 Aligned_cols=30 Identities=10% Similarity=0.074 Sum_probs=19.9 Q ss_pred CCCCCCCCCEEEE-----------CCCCCCCCCCCCCEECHH Q ss_conf 3117888874421-----------488872277898715323 Q gi|254780459|r 9 KRTCPDTGKRFYD-----------LNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 9 KR~C~~Cg~KFYD-----------lnk~PiiCP~CG~e~~~~ 39 (129) +-.|+.|+.+|.- ....|.-|| ||...-|. T Consensus 129 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~~p~c~-Cgg~lrP~ 169 (265) T 3jwp_A 129 EAVCCTCNKIVKLNKIMLQKTSHFMHQLPPECP-CGGIFKPN 169 (265) T ss_dssp EEEETTTCCEEECCHHHHSTTSSTTTSSSCBCT-TSCBEEEE T ss_pred EEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCC-CCCCCCCC T ss_conf 567478898743425443211221157898778-79856887 No 84 >1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5 Probab=70.60 E-value=1.2 Score=23.59 Aligned_cols=31 Identities=10% Similarity=0.005 Sum_probs=20.6 Q ss_pred CCCCCCCCCEEEEC---C-CCCCCCCCCCCEECHH Q ss_conf 31178888744214---8-8872277898715323 Q gi|254780459|r 9 KRTCPDTGKRFYDL---N-KQVIVSPYTQNSWPLA 39 (129) Q Consensus 9 KR~C~~Cg~KFYDl---n-k~PiiCP~CG~e~~~~ 39 (129) +-.|+.||.+|.-. . .....||.||...-|. T Consensus 113 ~~~C~~C~~~~~~~~~~~~~~~~~c~~Cgg~lrP~ 147 (235) T 1s5p_A 113 KVRCSQSGQVLDWTGDVTPEDKCHCCQFPAPLRPH 147 (235) T ss_dssp EEEETTTCCEEECCSCCCSSCCC-------CEEEE T ss_pred EEEECCCCCCCCCHHHHCCCCCCCCCCCCCEECCC T ss_conf 34678999816723332025788754557407688 No 85 >2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae} Probab=70.28 E-value=1.2 Score=23.48 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=15.1 Q ss_pred CCCCCCCCCEEEE-------CCCCCCCCCCCCC Q ss_conf 3117888874421-------4888722778987 Q gi|254780459|r 9 KRTCPDTGKRFYD-------LNKQVIVSPYTQN 34 (129) Q Consensus 9 KR~C~~Cg~KFYD-------lnk~PiiCP~CG~ 34 (129) .-+|.+|+.+|.- .+.....||.|+. T Consensus 161 ~~~C~~C~~~~~~~~~~~~~~~~~vP~Cp~C~~ 193 (354) T 2hjh_A 161 TATCVTCHWNLPGERIFNKIRNLELPLCPYCYK 193 (354) T ss_dssp EEEETTTCCEEEGGGGHHHHHTTCCCBCTTTHH T ss_pred EEEECCCCCCCCHHHHHHHHHCCCCCCCCCHHH T ss_conf 788568898387899999885168998940111 No 86 >1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ... Probab=70.24 E-value=2.1 Score=22.07 Aligned_cols=31 Identities=16% Similarity=0.179 Sum_probs=22.4 Q ss_pred CCCCCCCCCEEEEC----CCC-CCCCCCCCCEECHH Q ss_conf 31178888744214----888-72277898715323 Q gi|254780459|r 9 KRTCPDTGKRFYDL----NKQ-VIVSPYTQNSWPLA 39 (129) Q Consensus 9 KR~C~~Cg~KFYDl----nk~-PiiCP~CG~e~~~~ 39 (129) =|-||.||.-.|=. ++. -..|+.||.++... T Consensus 4 m~FCp~C~nlL~~~~~~~~~~l~~~C~~C~y~~~~~ 39 (122) T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAG 39 (122) T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEECS T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC T ss_conf 687744373777255788877589889998851257 No 87 >3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Probab=70.19 E-value=2.2 Score=21.94 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=21.4 Q ss_pred CCCHHHCCC----CCCCCCCCEEEECCCCCCCCCCCCCEECHH Q ss_conf 975222783----117888874421488872277898715323 Q gi|254780459|r 1 MAKPELGTK----RTCPDTGKRFYDLNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 1 MaK~elG~K----R~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~ 39 (129) ||-|+-=.. -.|+=|.-.| ++|++.| ||+.|=-. T Consensus 3 ~~~p~~~~~~~ed~~C~IC~~~~----~~pv~l~-CgH~fC~~ 40 (115) T 3l11_A 3 MALPKDAIPSLSECQCGICMEIL----VEPVTLP-CNHTLCKP 40 (115) T ss_dssp CCCCTTCCCCHHHHBCTTTCSBC----SSCEECT-TSCEECHH T ss_pred CCCCCCCCCCCCCCCCCCCCCCC----CCCEECC-CCCCHHHH T ss_conf 88985558998889997888302----8807827-99843499 No 88 >3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D* Probab=70.01 E-value=1.6 Score=22.76 Aligned_cols=21 Identities=10% Similarity=0.203 Sum_probs=11.4 Q ss_pred CCCEEEECCCCCCCCCCCCCEE Q ss_conf 8874421488872277898715 Q gi|254780459|r 15 TGKRFYDLNKQVIVSPYTQNSW 36 (129) Q Consensus 15 Cg~KFYDlnk~PiiCP~CG~e~ 36 (129) || ||+-.+...++|..||.++ T Consensus 72 c~-~~~~~~~~~~~C~tCg~~~ 92 (1407) T 3lu0_D 72 CG-KYKRLKHRGVICEKCGVEV 92 (1407) T ss_dssp SC-SCCSTTCSSSCCSSSCCCC T ss_pred CC-CCCCCCCCCCCCCCCCCCC T ss_conf 66-5333255986999999804 No 89 >1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1 Probab=69.57 E-value=2.5 Score=21.63 Aligned_cols=31 Identities=13% Similarity=0.149 Sum_probs=24.0 Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCCEECH Q ss_conf 78311788887442148887227789871532 Q gi|254780459|r 7 GTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPL 38 (129) Q Consensus 7 G~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~ 38 (129) |..-.|..|+++|==| +.--.|..||..|=- T Consensus 7 ~~~s~C~~C~~~Fs~~-~rrhhCr~CG~v~C~ 37 (88) T 1wfk_A 7 GMESRCYGCAVKFTLF-KKEYGCKNCGRAFCN 37 (88) T ss_dssp CCCSBCTTTCCBCCSS-SCEEECSSSCCEEET T ss_pred CCCCCCCCCCCCCCCC-CCCCCCCCCCCEECC T ss_conf 3468193649813374-436546557896391 No 90 >1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Probab=69.32 E-value=1.1 Score=23.88 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=13.9 Q ss_pred CCCCCCCEEEECC---------CCCCCCCCCCCEEC Q ss_conf 1788887442148---------88722778987153 Q gi|254780459|r 11 TCPDTGKRFYDLN---------KQVIVSPYTQNSWP 37 (129) Q Consensus 11 ~C~~Cg~KFYDln---------k~PiiCP~CG~e~~ 37 (129) .|..|+.+|..+. ..|..|+.||..|. T Consensus 18 ~C~~C~~~F~~~~~l~~H~~~h~~~~~C~~C~~~F~ 53 (107) T 1wjp_A 18 QCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFF 53 (107) T ss_dssp BCTTTCCBCSSHHHHHHHHHHHHHSBCCTTTCCCBS T ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEC T ss_conf 594989956788999978317698969899988437 No 91 >1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Probab=69.14 E-value=2.7 Score=21.39 Aligned_cols=35 Identities=6% Similarity=-0.013 Sum_probs=26.7 Q ss_pred CCCCCCCCCCEEEEC-----------CCCCCCCCCCCCEECHHHHH Q ss_conf 831178888744214-----------88872277898715323310 Q gi|254780459|r 8 TKRTCPDTGKRFYDL-----------NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 8 ~KR~C~~Cg~KFYDl-----------nk~PiiCP~CG~e~~~~~~~ 42 (129) .--.|+.|+.+|... +..|-.|+.||..|.-...+ T Consensus 8 kPy~C~~C~~~f~~~~~L~~H~~~H~~~kpy~C~~C~~~f~~~~~L 53 (70) T 1x5w_A 8 HPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNL 53 (70) T ss_dssp CSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHH T ss_pred CCEECCCCCCEECCHHHHHHHHHHHCCCCCEECCCCCCEECCHHHH T ss_conf 5901899988619899999999985799782789778874888899 No 92 >2waq_B DNA-directed RNA polymerase RPO2 subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_B 2pmz_B 3hkz_B Probab=69.07 E-value=2.2 Score=21.93 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=17.8 Q ss_pred CCCCCCCC-EEEECCCCCCCCCCCCCE Q ss_conf 11788887-442148887227789871 Q gi|254780459|r 10 RTCPDTGK-RFYDLNKQVIVSPYTQNS 35 (129) Q Consensus 10 R~C~~Cg~-KFYDlnk~PiiCP~CG~e 35 (129) ++|..||. ++|+.++.-..|+.||.. T Consensus 1062 ~vc~~cG~~~~~~~~~~~~~c~~c~~~ 1088 (1131) T 2waq_B 1062 YVCDQCGYIGWYDKNKNKYVCPIHGDK 1088 (1131) T ss_dssp EECSSSCCCCCCCSSSSCCCCTTCSSS T ss_pred EECCCCCCEEEEECCCCCEECCCCCCC T ss_conf 304677865888535783457736886 No 93 >2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Probab=68.37 E-value=1.6 Score=22.77 Aligned_cols=34 Identities=21% Similarity=0.396 Sum_probs=25.6 Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCCEECHHHHHCC Q ss_conf 78311788887442148887227789871532331012 Q gi|254780459|r 7 GTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEAP 44 (129) Q Consensus 7 G~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~~ 44 (129) |.--+||=|+.-| ++|++.|.||..|.-.-+.+- T Consensus 1 ~s~l~C~Ic~~~~----~~Pv~~~~cGh~fc~~cI~~~ 34 (61) T 2bay_A 1 GSHMLCAISGKVP----RRPVLSPKSRTIFEKSLLEQY 34 (61) T ss_dssp ---CCCTTTCSCC----SSEEEETTTTEEEEHHHHHHH T ss_pred CCEEECCCCCCCC----CCCEECCCCCCEECHHHHHHH T ss_conf 9842846989923----388696889876029899999 No 94 >2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Probab=67.93 E-value=2.5 Score=21.60 Aligned_cols=31 Identities=13% Similarity=0.286 Sum_probs=23.4 Q ss_pred CCCCCCCCEEEEC-------------CCCCCCCCCCCCEECHHH Q ss_conf 1178888744214-------------888722778987153233 Q gi|254780459|r 10 RTCPDTGKRFYDL-------------NKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 10 R~C~~Cg~KFYDl-------------nk~PiiCP~CG~e~~~~~ 40 (129) -.|+-||..|... +..|-.||.||..|.-.. T Consensus 11 y~C~~C~k~f~~~~~L~~H~~~~~~~~~k~~~C~~C~k~F~~~~ 54 (66) T 2drp_A 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKD 54 (66) T ss_dssp EECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHH T ss_pred EECCCCCCCCCCHHHHHCCCCEECCCCCCCEECCCCCCEECCHH T ss_conf 48999998708766722347630268775808989899808988 No 95 >1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3 Probab=67.88 E-value=1.9 Score=22.25 Aligned_cols=29 Identities=17% Similarity=0.424 Sum_probs=22.9 Q ss_pred CCCCCC--CCCEEEECCCCCCCCCCCCCEEC Q ss_conf 311788--88744214888722778987153 Q gi|254780459|r 9 KRTCPD--TGKRFYDLNKQVIVSPYTQNSWP 37 (129) Q Consensus 9 KR~C~~--Cg~KFYDlnk~PiiCP~CG~e~~ 37 (129) =..||+ |++|-.+.+-.--.||+||..++ T Consensus 43 Y~aCp~~~C~kKv~~~~~~~~~C~~C~~~~~ 73 (181) T 1l1o_C 43 YQACPTQDCNKKVIDQQNGLYRCEKCDTEFP 73 (181) T ss_dssp EEBCCSTTCCCBCEEETTTEEEETTTTEEES T ss_pred ECCCCCHHCCCCCCCCCCCEEECCCCCCCCC T ss_conf 8258904359835558998288887898277 No 96 >2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Probab=67.01 E-value=2.1 Score=22.00 Aligned_cols=14 Identities=0% Similarity=-0.071 Sum_probs=7.2 Q ss_pred CCCCCCCCCCEECH Q ss_conf 87227789871532 Q gi|254780459|r 25 QVIVSPYTQNSWPL 38 (129) Q Consensus 25 ~PiiCP~CG~e~~~ 38 (129) .|-.|+.||..|.- T Consensus 11 Kpy~C~~C~k~F~~ 24 (46) T 2yto_A 11 KPYKCSDCGKAFTR 24 (46) T ss_dssp CCEECSSSCCEESS T ss_pred CCEECCCCCCEECC T ss_conf 89588999897087 No 97 >2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=67.00 E-value=2.6 Score=21.48 Aligned_cols=33 Identities=6% Similarity=0.026 Sum_probs=24.4 Q ss_pred HHCCCCCCCCCCCEEEECCCCCCCCCCCCCEECHHHHH Q ss_conf 22783117888874421488872277898715323310 Q gi|254780459|r 5 ELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 5 elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~ 42 (129) .+.....||-|...| +.|++.| ||+.|-..=+. T Consensus 11 ~~~~~~~C~IC~~~~----~~pv~~~-CgH~fC~~Ci~ 43 (66) T 2ecy_A 11 TVEDKYKCEKCHLVL----CSPKQTE-CGHRFCESCMA 43 (66) T ss_dssp SCCCCEECTTTCCEE----SSCCCCS-SSCCCCHHHHH T ss_pred CCCCCCCCCCCCCCC----CCCEECC-CCCCCCHHHHH T ss_conf 788879996849230----0847889-99851099999 No 98 >2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Probab=66.33 E-value=2.1 Score=22.07 Aligned_cols=13 Identities=8% Similarity=-0.066 Sum_probs=6.7 Q ss_pred CCCCCCCCCCEEC Q ss_conf 8722778987153 Q gi|254780459|r 25 QVIVSPYTQNSWP 37 (129) Q Consensus 25 ~PiiCP~CG~e~~ 37 (129) .|-.|..||..|. T Consensus 11 Kpy~C~~CgK~F~ 23 (46) T 2ep1_A 11 KPYECSDCGKSFI 23 (46) T ss_dssp CSSCCSSSCCCCS T ss_pred CCEECCCCCCCCC T ss_conf 8968999999628 No 99 >2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Probab=66.22 E-value=3.2 Score=20.91 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=23.1 Q ss_pred HCCCCCCCCCCCEEEE------------CCCCCCCCCCCCCEEC Q ss_conf 2783117888874421------------4888722778987153 Q gi|254780459|r 6 LGTKRTCPDTGKRFYD------------LNKQVIVSPYTQNSWP 37 (129) Q Consensus 6 lG~KR~C~~Cg~KFYD------------lnk~PiiCP~CG~e~~ 37 (129) ....-.|+.||+.|.- .+..|-.|+.|+.-|. T Consensus 9 ~ekpy~C~~Cgk~F~~~~~L~~H~~~~H~~~kpy~C~~C~k~fs 52 (54) T 2eps_A 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52 (54) T ss_dssp SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSC T ss_pred CCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCEECCCCCCCCC T ss_conf 98786688989986874462574653438987847878387618 No 100 >2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis} Probab=66.10 E-value=3.3 Score=20.88 Aligned_cols=39 Identities=21% Similarity=0.321 Sum_probs=26.4 Q ss_pred CCC--CCCCCCCEEEECCCCCC-CCCCCCC-EECHHHHHCCCCC Q ss_conf 831--17888874421488872-2778987-1532331012344 Q gi|254780459|r 8 TKR--TCPDTGKRFYDLNKQVI-VSPYTQN-SWPLAYFEAPTSP 47 (129) Q Consensus 8 ~KR--~C~~Cg~KFYDlnk~Pi-iCP~CG~-e~~~~~~~~~~~~ 47 (129) .|| .|+ ||.|-+=|+|-|. .|++||. .|.-..+.+-+++ T Consensus 45 ~KRFFkC~-C~~Rt~sl~r~P~~~C~~Cg~~~weR~~M~~Ek~g 87 (92) T 2kwq_A 45 VKRFFKCP-CGNRTISLDRLPKKHCSTCGLFKWERVGMLKEKTG 87 (92) T ss_dssp ECEEEECT-TSCEEEESSSSCCSCCTTTCSCCCEEECCCSSSCC T ss_pred EEEEEECC-CCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCC T ss_conf 44369989-99917872026886577678681566024021347 No 101 >3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Probab=66.08 E-value=2.9 Score=21.16 Aligned_cols=27 Identities=22% Similarity=0.568 Sum_probs=16.1 Q ss_pred CCCCCCCEE----EE--CC-CCCCCCCCCCCEEC Q ss_conf 178888744----21--48-88722778987153 Q gi|254780459|r 11 TCPDTGKRF----YD--LN-KQVIVSPYTQNSWP 37 (129) Q Consensus 11 ~C~~Cg~KF----YD--ln-k~PiiCP~CG~e~~ 37 (129) +|..||-.| .. |. +.--.||.|.+.|+ T Consensus 195 ~~~~C~H~Fh~~Ci~~wl~~~~~~~CP~Cr~~~~ 228 (238) T 3nw0_A 195 SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238) T ss_dssp ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC T ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 8699998116999999994678985969998788 No 102 >1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ... Probab=65.84 E-value=1.7 Score=22.61 Aligned_cols=29 Identities=17% Similarity=0.579 Sum_probs=22.0 Q ss_pred CCCCCCCCCCCEEEECCCC---CCCCCCCCCEEC Q ss_conf 7831178888744214888---722778987153 Q gi|254780459|r 7 GTKRTCPDTGKRFYDLNKQ---VIVSPYTQNSWP 37 (129) Q Consensus 7 G~KR~C~~Cg~KFYDlnk~---PiiCP~CG~e~~ 37 (129) -.|++||.||.. -+.|. --.|-+||..|. T Consensus 25 ~aky~Cp~Cgk~--~vkR~a~GIW~C~kC~~~~A 56 (83) T 1vq8_Z 25 NEDHACPNCGED--RVDRQGTGIWQCSYCDYKFT 56 (83) T ss_dssp HSCEECSSSCCE--EEEEEETTEEEETTTCCEEE T ss_pred HCCCCCCCCCCC--EEEEEEEEEEECCCCCCEEE T ss_conf 079719899997--67899988978378999885 No 103 >4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ... Probab=65.84 E-value=2.6 Score=21.46 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=15.4 Q ss_pred CCCCCCCCC-----------------EEEECCCCCCCCCCCCCE Q ss_conf 311788887-----------------442148887227789871 Q gi|254780459|r 9 KRTCPDTGK-----------------RFYDLNKQVIVSPYTQNS 35 (129) Q Consensus 9 KR~C~~Cg~-----------------KFYDlnk~PiiCP~CG~e 35 (129) |-.|+.||- .|-+|- .-=+||-||+. T Consensus 3 ky~C~~CgyiYdp~~Gd~~~gi~pGT~F~~LP-~dw~CP~C~a~ 45 (54) T 4rxn_A 3 KYTCTVCGYIYDPEDGDPDDGVNPGTDFKDIP-DDWVCPLCGVG 45 (54) T ss_dssp CEEETTTCCEECTTTCBGGGTBCTTCCGGGSC-TTCBCTTTCCB T ss_pred CEECCCCCCEECCCCCCCCCCCCCCCCHHHCC-CCCCCCCCCCC T ss_conf 75939999087755488456879899978889-98889399893 No 104 >3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} Probab=65.78 E-value=2.9 Score=21.17 Aligned_cols=29 Identities=10% Similarity=0.233 Sum_probs=21.9 Q ss_pred CCCCCCCCCCEEEECCCCC---CCCCCCCCEECH Q ss_conf 8311788887442148887---227789871532 Q gi|254780459|r 8 TKRTCPDTGKRFYDLNKQV---IVSPYTQNSWPL 38 (129) Q Consensus 8 ~KR~C~~Cg~KFYDlnk~P---iiCP~CG~e~~~ 38 (129) .|++||.||.. -+.|.- =.|-+||..|.- T Consensus 25 ~ky~CpfCgk~--~vkR~a~GIW~C~~C~~~~AG 56 (72) T 3jyw_9 25 ARYDCSFCGKK--TVKRGAAGIWTCSCCKKTVAG 56 (72) T ss_dssp SCBCCSSCCSS--CBSBCSSSCBCCSSSCCCCCC T ss_pred CCCCCCCCCCC--EEEEEEEEEEECCCCCCEEEC T ss_conf 78409999997--778898889873898988856 No 105 >2i13_A AART; DNA binding, zinc finger, DNA binding protein/DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Probab=65.70 E-value=2.9 Score=21.20 Aligned_cols=10 Identities=20% Similarity=0.258 Sum_probs=3.2 Q ss_pred CCCCCCCCEE Q ss_conf 2277898715 Q gi|254780459|r 27 IVSPYTQNSW 36 (129) Q Consensus 27 iiCP~CG~e~ 36 (129) ..|+.||..| T Consensus 162 ~~C~~C~~~f 171 (190) T 2i13_A 162 YKCPECGKSF 171 (190) T ss_dssp EECTTTCCEE T ss_pred EECCCCCCEE T ss_conf 1899999872 No 106 >1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Probab=65.57 E-value=3 Score=21.07 Aligned_cols=33 Identities=15% Similarity=0.311 Sum_probs=25.1 Q ss_pred CCCC--CCCCEEEE---C--------CCCCCCCCCCCCEECHHHHH Q ss_conf 1178--88874421---4--------88872277898715323310 Q gi|254780459|r 10 RTCP--DTGKRFYD---L--------NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 10 R~C~--~Cg~KFYD---l--------nk~PiiCP~CG~e~~~~~~~ 42 (129) -.|+ .||..|.- | +..|-.|+.||..|.-...+ T Consensus 20 y~C~~~~C~k~F~~~~~l~~H~~~H~~~k~~~C~~C~k~F~~~~~L 65 (73) T 1f2i_G 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHL 65 (73) T ss_dssp EECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHH T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCHHHH T ss_conf 5399887889329789999999860898382799898873988999 No 107 >3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Probab=65.44 E-value=1.1 Score=23.89 Aligned_cols=26 Identities=15% Similarity=0.086 Sum_probs=19.5 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCEE Q ss_conf 117888874421488872277898715 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQVIVSPYTQNSW 36 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~ 36 (129) -.|+.|+++|= |-+.-=.|..||..| T Consensus 376 ~~C~~C~~~F~-~~~RrhhCr~CG~vv 401 (434) T 3mpx_A 376 MMCMNCGCDFS-LTLRRHHCHACGKIV 401 (434) T ss_dssp --------------------------- T ss_pred CCCCCCCCCCC-CCCCCCCCCCCCCEE T ss_conf 71889999557-724360578898876 No 108 >2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Probab=65.43 E-value=3.8 Score=20.44 Aligned_cols=35 Identities=9% Similarity=-0.044 Sum_probs=26.2 Q ss_pred CCCCCCCCCCEEEE-----------CCCCCCCCCCCCCEECHHHHH Q ss_conf 83117888874421-----------488872277898715323310 Q gi|254780459|r 8 TKRTCPDTGKRFYD-----------LNKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 8 ~KR~C~~Cg~KFYD-----------lnk~PiiCP~CG~e~~~~~~~ 42 (129) ....|..|+..|+. .+..|-.|+.||..|.-...+ T Consensus 65 ~~~~c~~c~~~~~~~~~l~~H~~~H~~~k~~~C~~C~k~F~~~~~L 110 (124) T 2dlq_A 65 QVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDL 110 (124) T ss_dssp CCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEECCHHHH T ss_conf 5630133222221131104223121699764889989891989999 No 109 >2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida} Probab=65.06 E-value=2.5 Score=21.61 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=23.4 Q ss_pred CCCCCCCCEE--EECCCCCCCCCCCCCEECHH Q ss_conf 1178888744--21488872277898715323 Q gi|254780459|r 10 RTCPDTGKRF--YDLNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 10 R~C~~Cg~KF--YDlnk~PiiCP~CG~e~~~~ 39 (129) -.||..|... ..+...-|+||+.|..|.+. T Consensus 42 ~~CpH~~~~l~~g~~~~~~i~Cp~Hg~~F~~~ 73 (103) T 2qpz_A 42 NLCTHGSARMSDGYLEGREIECPLHQGRFDVC 73 (103) T ss_dssp SBCSSSSCBGGGSEEETTEEECTTTTCEEETT T ss_pred EECCCCCCCCCCCCCCCCEEEECCCCCEEECC T ss_conf 67899996442343179999818989899899 No 110 >3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* Probab=64.67 E-value=2.4 Score=21.68 Aligned_cols=28 Identities=11% Similarity=0.106 Sum_probs=16.6 Q ss_pred CCCCCCEEE---------ECCCC-------C-CCCCCCCCEE-CHH Q ss_conf 788887442---------14888-------7-2277898715-323 Q gi|254780459|r 12 CPDTGKRFY---------DLNKQ-------V-IVSPYTQNSW-PLA 39 (129) Q Consensus 12 C~~Cg~KFY---------Dlnk~-------P-iiCP~CG~e~-~~~ 39 (129) ||.||...| .++-. + -+||.||..+ .+. T Consensus 5 C~~Cg~~~~~~~~~~~~~~~kG~~~~i~~~~~~~C~~Cge~~~~~~ 50 (133) T 3o9x_A 5 CPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMNKE 50 (133) T ss_dssp CTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEECCHH T ss_pred CCCCCCCCEECCCCEEEEEECCEEEEECCEEEEECCCCCCCCCCHH T ss_conf 9689995403012114799778889983512158988878744713 No 111 >3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Probab=64.46 E-value=2.8 Score=21.26 Aligned_cols=25 Identities=8% Similarity=0.156 Sum_probs=17.1 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCEECHH Q ss_conf 17888874421488872277898715323 Q gi|254780459|r 11 TCPDTGKRFYDLNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~ 39 (129) .||=|--.| +.|++.|.||..|=-. T Consensus 24 ~C~IC~~~~----~~~~~~~~CgH~fC~~ 48 (100) T 3lrq_A 24 RCFICMEKL----RDARLCPHCSKLCCFS 48 (100) T ss_dssp BCTTTCSBC----SSEEECTTTCCEEEHH T ss_pred CCCCCCCCC----CCEEEECCCCCCCCHH T ss_conf 998647448----9845869999887988 No 112 >2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator, zinc-finger; 1.70A {Mus musculus} PDB: 2wbu_A Probab=64.45 E-value=3.5 Score=20.71 Aligned_cols=33 Identities=6% Similarity=0.054 Sum_probs=22.3 Q ss_pred CCCCCCCCCEEEE-----------CCCCCCCCCCCCCEECHHHH Q ss_conf 3117888874421-----------48887227789871532331 Q gi|254780459|r 9 KRTCPDTGKRFYD-----------LNKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 9 KR~C~~Cg~KFYD-----------lnk~PiiCP~CG~e~~~~~~ 41 (129) +-.|..||..|+. -+..|-.|+.||..|.-... T Consensus 37 ~c~~~~c~~~~~~~~~l~~H~~~h~~~k~~~C~~C~k~F~~~~~ 80 (89) T 2wbs_A 37 HCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDH 80 (89) T ss_dssp ECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHH T ss_pred CCCCCCCCCCCCCHHHHCCCCCCCCCCCCEECCCCCCCCCCHHH T ss_conf 36765677522684573040530289868279999998388899 No 113 >6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1 Probab=64.38 E-value=2.9 Score=21.23 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=16.7 Q ss_pred CCCCCCCCCCEEEECC--------CCC--CCCCCCCCE Q ss_conf 8311788887442148--------887--227789871 Q gi|254780459|r 8 TKRTCPDTGKRFYDLN--------KQV--IVSPYTQNS 35 (129) Q Consensus 8 ~KR~C~~Cg~KFYDln--------k~P--iiCP~CG~e 35 (129) .|-+|..||--| |-. .-| =+||-||+. T Consensus 3 ~~y~C~~CgyiY-dp~~GdGt~F~~lp~dw~CP~C~a~ 39 (46) T 6rxn_A 3 QKYVCNVCGYEY-DPAEHDNVPFDQLPDDWCCPVCGVS 39 (46) T ss_dssp CCEEETTTCCEE-CGGGGTTCCGGGSCTTCBCTTTCCB T ss_pred CCEECCCCCEEE-CCCCCCCCCHHHCCCCCCCCCCCCC T ss_conf 775969999287-7743799887788988768499883 No 114 >1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 Probab=63.81 E-value=2.5 Score=21.60 Aligned_cols=23 Identities=9% Similarity=0.135 Sum_probs=17.5 Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCE Q ss_conf 8311788887442148887227789871 Q gi|254780459|r 8 TKRTCPDTGKRFYDLNKQVIVSPYTQNS 35 (129) Q Consensus 8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~e 35 (129) ..|.|..|+.-+=+ =.||.||.+ T Consensus 10 ~~rAC~~C~~i~~~-----~~CPnCgs~ 32 (69) T 1ryq_A 10 SEKACRHCHYITSE-----DRCPVCGSR 32 (69) T ss_dssp -CEEETTTCBEESS-----SSCTTTCCC T ss_pred CCHHHHHCCCCCCC-----CCCCCCCCC T ss_conf 02347519876579-----979798498 No 115 >1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A Probab=63.49 E-value=3.4 Score=20.73 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=15.1 Q ss_pred CCCCCCCCCEE-----------------EECCCCCCCCCCCCCE Q ss_conf 31178888744-----------------2148887227789871 Q gi|254780459|r 9 KRTCPDTGKRF-----------------YDLNKQVIVSPYTQNS 35 (129) Q Consensus 9 KR~C~~Cg~KF-----------------YDlnk~PiiCP~CG~e 35 (129) |-+|..||-.| -+|- .-=+||-||+. T Consensus 3 ~y~C~~CgyiYdp~~Gd~~~gi~pGT~F~~LP-~dw~CP~C~a~ 45 (52) T 1e8j_A 3 IYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLP-DDWACPVCGAS 45 (52) T ss_dssp CEECSSSCCCCCTTTCCTTTTCCSSCCTTSSC-TTCCCSSSCCC T ss_pred EEECCCCCEEECCCCCCCCCCCCCCCCHHHCC-CCCCCCCCCCC T ss_conf 16909999087866588456879999978889-98889499880 No 116 >1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1 Probab=63.42 E-value=3.7 Score=20.55 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=18.4 Q ss_pred CCCCCCCCCCCEEEECCC-----------------CCCCCCCCCCE Q ss_conf 783117888874421488-----------------87227789871 Q gi|254780459|r 7 GTKRTCPDTGKRFYDLNK-----------------QVIVSPYTQNS 35 (129) Q Consensus 7 G~KR~C~~Cg~KFYDlnk-----------------~PiiCP~CG~e 35 (129) ..|-+|+.|| --||-.+ .--+||-||+. T Consensus 33 ~~ky~C~~Cg-yiYDp~~Gd~~~gi~pGT~FedLP~dw~CP~Cg~~ 77 (87) T 1s24_A 33 YLKWICITCG-HIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGAT 77 (87) T ss_dssp CCEEEETTTT-EEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCC T ss_pred CCEEECCCCC-CEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC T ss_conf 7758899999-18766658845586999987788998868499884 No 117 >3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Probab=62.87 E-value=2.6 Score=21.50 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=20.6 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCEECHHHHHC Q ss_conf 178888744214888722778987153233101 Q gi|254780459|r 11 TCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEA 43 (129) Q Consensus 11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~ 43 (129) +|+-|...|+ .|++.| ||+.|-..-+.+ T Consensus 54 ~C~IC~~~~~----~pv~~~-CgH~fC~~Ci~~ 81 (124) T 3fl2_A 54 QCICCQELVF----RPITTV-CQHNVCKDCLDR 81 (124) T ss_dssp BCTTTSSBCS----SEEECT-TSCEEEHHHHHH T ss_pred CCCCCCCCCC----CCCCCC-CCCCCCHHHHHH T ss_conf 9818283201----767678-998442879999 No 118 >1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A* Probab=62.59 E-value=1.3 Score=23.23 Aligned_cols=25 Identities=12% Similarity=0.147 Sum_probs=14.5 Q ss_pred CCCCCCCEEEEC-CCCCCCCCCCCCE Q ss_conf 178888744214-8887227789871 Q gi|254780459|r 11 TCPDTGKRFYDL-NKQVIVSPYTQNS 35 (129) Q Consensus 11 ~C~~Cg~KFYDl-nk~PiiCP~CG~e 35 (129) +|.+||.+.==+ .+.--+||.||.. T Consensus 542 ~C~~Cg~~~~~~~~e~~~~CP~CG~~ 567 (605) T 1h7b_A 542 KCFTCGSTHEMTPTENGFVCSICGET 567 (605) T ss_dssp ET------------------------ T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 57778987860457779839089699 No 119 >2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=62.39 E-value=2.8 Score=21.31 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=23.6 Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCEE Q ss_conf 3117888874421488872277898715 Q gi|254780459|r 9 KRTCPDTGKRFYDLNKQVIVSPYTQNSW 36 (129) Q Consensus 9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e~ 36 (129) .+.|..|+..|-=|.+....|..||..| T Consensus 25 ~~~C~~C~~~F~~l~~rk~~C~~Cg~~v 52 (76) T 2csz_A 25 DRTCARCQESLGRLSPKTNTCRGCNHLV 52 (76) T ss_dssp CCBCSSSCCBCSSSCTTTSEETTTTEEC T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEE T ss_conf 9847120860168577998646899978 No 120 >2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Probab=62.26 E-value=3.3 Score=20.86 Aligned_cols=15 Identities=0% Similarity=-0.031 Sum_probs=8.5 Q ss_pred CCCCCCCCCCCEECH Q ss_conf 887227789871532 Q gi|254780459|r 24 KQVIVSPYTQNSWPL 38 (129) Q Consensus 24 k~PiiCP~CG~e~~~ 38 (129) ..|-.|..||..|.- T Consensus 10 EKpy~C~~Cgk~F~~ 24 (46) T 2em2_A 10 EKPFKCKECGKAFRQ 24 (46) T ss_dssp CCSEECSSSCCEESS T ss_pred CCCEECCCCCCCCCC T ss_conf 989799998996387 No 121 >2ckl_A Polycomb group ring finger protein 4; BMI1, zinc, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 2h0d_A Probab=62.25 E-value=2.5 Score=21.62 Aligned_cols=28 Identities=14% Similarity=0.075 Sum_probs=20.6 Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCEECHHH Q ss_conf 31178888744214888722778987153233 Q gi|254780459|r 9 KRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~ 40 (129) --+|+=|...|+ +|++.+.||+.|=-.= T Consensus 15 ~l~C~IC~~~~~----~pv~~~~CgH~FC~~C 42 (108) T 2ckl_A 15 HLMCVLCGGYFI----DATTIIECLHSFCKTC 42 (108) T ss_dssp GTBCTTTSSBCS----SEEEETTTCCEEEHHH T ss_pred CCCCCCCCHHHC----CCCEECCCCCCHHHHH T ss_conf 989867993763----9748158998232999 No 122 >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* Probab=62.11 E-value=3 Score=21.13 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=16.8 Q ss_pred CCCCCCCCC--------------------CEEEECCCCCCCCCCCCC Q ss_conf 831178888--------------------744214888722778987 Q gi|254780459|r 8 TKRTCPDTG--------------------KRFYDLNKQVIVSPYTQN 34 (129) Q Consensus 8 ~KR~C~~Cg--------------------~KFYDlnk~PiiCP~CG~ 34 (129) .+|.||.|. .+|| .|.-||.|.. T Consensus 303 v~~LCp~C~~~~~~~~~~~~~~~~~~~~~~~~~----~~~GC~~C~~ 345 (418) T 1p9r_A 303 VRTLCPDCKEPYEADKEQRKLFDSKKKEPLILY----RATGCPKCNH 345 (418) T ss_dssp EEEECTTTCEEEECCHHHHTTC-----CCCEEE----ECCCCSSSCS T ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEE----ECCCCCCCCC T ss_conf 622389876567899999964253455763898----4898642489 No 123 >2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Probab=61.87 E-value=3.3 Score=20.86 Aligned_cols=13 Identities=0% Similarity=-0.097 Sum_probs=7.0 Q ss_pred CCCCCCCCCCEEC Q ss_conf 8722778987153 Q gi|254780459|r 25 QVIVSPYTQNSWP 37 (129) Q Consensus 25 ~PiiCP~CG~e~~ 37 (129) .|-.|..||..|. T Consensus 11 Kpy~C~~C~k~F~ 23 (46) T 2em8_A 11 KPYKCVECGKGYK 23 (46) T ss_dssp CSEECSSSCCEES T ss_pred CCEECCCCCCCCC T ss_conf 8808998897847 No 124 >2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus} Probab=61.53 E-value=3.8 Score=20.47 Aligned_cols=27 Identities=7% Similarity=-0.139 Sum_probs=21.7 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCEE Q ss_conf 117888874421488872277898715 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQVIVSPYTQNSW 36 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~ 36 (129) +.|.-|+..|==|.....+|..||..| T Consensus 69 ~~C~~C~~~f~~l~~~~~~C~~C~~~v 95 (153) T 2zet_C 69 THCARCLQPYRLLLNSRRQCLECSLFV 95 (153) T ss_dssp TBCTTTCCBGGGCSSCCEECTTTCCEE T ss_pred CHHHHHCCCCCCCCCCCCCCCCCCHHH T ss_conf 400454786545457887343476021 No 125 >2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus} Probab=61.38 E-value=2.4 Score=21.69 Aligned_cols=20 Identities=10% Similarity=0.102 Sum_probs=12.9 Q ss_pred CCCCCCCCCCCCCEECHHHH Q ss_conf 48887227789871532331 Q gi|254780459|r 22 LNKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 22 lnk~PiiCP~CG~e~~~~~~ 41 (129) |+-.---||.||.+|--.++ T Consensus 47 ~~~F~FKCP~CGEEFyG~~L 66 (95) T 2k5c_A 47 VEEFVFKCPVCGEEFYGKTL 66 (95) T ss_dssp HHHSEEECTTTCCEEETTSS T ss_pred HHHHHHCCCCCCHHHHCCCC T ss_conf 98770008866578872468 No 126 >1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y* Probab=61.33 E-value=2.4 Score=21.69 Aligned_cols=30 Identities=20% Similarity=0.164 Sum_probs=22.1 Q ss_pred CCCCCCCCCCCEEEECCCCC---CCCCCCCCEECH Q ss_conf 78311788887442148887---227789871532 Q gi|254780459|r 7 GTKRTCPDTGKRFYDLNKQV---IVSPYTQNSWPL 38 (129) Q Consensus 7 G~KR~C~~Cg~KFYDlnk~P---iiCP~CG~e~~~ 38 (129) =.|++||.||.. -+.|.- =.|-+||..|.- T Consensus 25 ~~ky~Cp~Cgk~--~vkR~a~GIW~C~~C~~~~aG 57 (73) T 1ffk_W 25 KKKYKCPVCGFP--KLKRASTSIWVCGHCGYKIAG 57 (73) T ss_pred CCCCCCCCCCCC--EEEEEEEEEEECCCCCCEEEC T ss_conf 177609989997--778899889874799998868 No 127 >1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 2h4h_A* 3jr3_A* 2h59_A* Probab=60.91 E-value=3.5 Score=20.69 Aligned_cols=31 Identities=13% Similarity=0.153 Sum_probs=20.7 Q ss_pred CCCCCCCCCEEE------EC-CCCCCCCCCCCCEECHH Q ss_conf 311788887442------14-88872277898715323 Q gi|254780459|r 9 KRTCPDTGKRFY------DL-NKQVIVSPYTQNSWPLA 39 (129) Q Consensus 9 KR~C~~Cg~KFY------Dl-nk~PiiCP~CG~e~~~~ 39 (129) +-.|..|+++|- .+ ...+..||.||...-|. T Consensus 121 ~~~C~~C~~~~~~~~~~~~~~~~~~p~c~~Cgg~lrP~ 158 (246) T 1yc5_A 121 EYYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPN 158 (246) T ss_dssp EEEETTTCCEEEHHHHHHHTTTCSSCBCTTTCCBEEEE T ss_pred EEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC T ss_conf 57878989847789987653035578734569815676 No 128 >2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Probab=60.37 E-value=3.4 Score=20.74 Aligned_cols=12 Identities=0% Similarity=-0.067 Sum_probs=5.6 Q ss_pred CCCCCCCCCCEE Q ss_conf 872277898715 Q gi|254780459|r 25 QVIVSPYTQNSW 36 (129) Q Consensus 25 ~PiiCP~CG~e~ 36 (129) .|-.|..||..| T Consensus 11 Kpy~C~~Cgk~F 22 (46) T 2ytq_A 11 KPYGCSECGKAF 22 (46) T ss_dssp CSCBCSSSCCBC T ss_pred CCEECCCCCCCC T ss_conf 996899989856 No 129 >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} Probab=59.82 E-value=3.4 Score=20.74 Aligned_cols=31 Identities=10% Similarity=0.120 Sum_probs=23.4 Q ss_pred HCCCCCCCCCCCEEEECCCCC-----CCCCCCCCEE Q ss_conf 278311788887442148887-----2277898715 Q gi|254780459|r 6 LGTKRTCPDTGKRFYDLNKQV-----IVSPYTQNSW 36 (129) Q Consensus 6 lG~KR~C~~Cg~KFYDlnk~P-----iiCP~CG~e~ 36 (129) +...|+|+.||.-|.-....| -+|..||... T Consensus 123 l~~Rr~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~l 158 (223) T 2xb4_A 123 IMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGAL 158 (223) T ss_dssp HHTBCEESSCTTSCCBTTCGGGCCBTTBCTTTCCBE T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 861200456787554334687776655554567711 No 130 >2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Probab=59.80 E-value=2 Score=22.15 Aligned_cols=13 Identities=8% Similarity=0.089 Sum_probs=6.7 Q ss_pred CCCCCCCCCCEEC Q ss_conf 8722778987153 Q gi|254780459|r 25 QVIVSPYTQNSWP 37 (129) Q Consensus 25 ~PiiCP~CG~e~~ 37 (129) .|..|+.||..|. T Consensus 65 k~~~C~~C~~~f~ 77 (119) T 2jp9_A 65 KPFQCKTCQRKFS 77 (119) T ss_dssp CCEECTTTCCEES T ss_pred CCCCCCCCCCCCC T ss_conf 7665755575367 No 131 >3dpt_A ROCO, RAB family protein; alpha-beta-protein, signaling protein; 2.90A {Chlorobaculum tepidum} Probab=59.61 E-value=2.1 Score=22.01 Aligned_cols=36 Identities=8% Similarity=0.094 Sum_probs=27.7 Q ss_pred CCCCCCCCCCEEEEC---------CCCCCCCCCCCCEECHHHHHC Q ss_conf 831178888744214---------888722778987153233101 Q gi|254780459|r 8 TKRTCPDTGKRFYDL---------NKQVIVSPYTQNSWPLAYFEA 43 (129) Q Consensus 8 ~KR~C~~Cg~KFYDl---------nk~PiiCP~CG~e~~~~~~~~ 43 (129) .+..||.|...||.. ++.-++||+|+..|....++. T Consensus 276 ~~VpCp~~~~~~~~~~~l~~~~~~g~~~~~c~~~~~~~~v~~Ll~ 320 (332) T 3dpt_A 276 EFIPLPGHPDELVEYKELLGLEKMGRDEYVSGKLEKVFSVSKMLD 320 (332) T ss_dssp EEEEETTEEEEEEEHHHHHHHHHTTCCEEEETTTTEEEEHHHHHH T ss_pred EEEECCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCEEEHHHHHC T ss_conf 898898998877489999999978996865798786755899646 No 132 >3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A Probab=59.56 E-value=6 Score=19.27 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=21.0 Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCEECHHH Q ss_conf 831178888744214888722778987153233 Q gi|254780459|r 8 TKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~ 40 (129) ...+|...=+.-| -++.-+.||+||+.|.+.. T Consensus 270 ~f~iCa~s~tpIy-~g~~~v~Cp~CgA~y~~~~ 301 (325) T 3mv2_A 270 KFDICAATYKPIY-EDTPSVSDPLTGSKYVITE 301 (325) T ss_dssp CEEECTTTCCEEE-SSSCEEECTTTCCEEEGGG T ss_pred CCEEECCCCEECC-CCCCCCCCCCCCCEECHHH T ss_conf 8405047765736-9999714179788625634 No 133 >3ofq_0 50S ribosomal protein L32; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ... Probab=59.17 E-value=3.9 Score=20.42 Aligned_cols=19 Identities=5% Similarity=0.043 Sum_probs=13.0 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCC Q ss_conf 178888744214888722778987 Q gi|254780459|r 11 TCPDTGKRFYDLNKQVIVSPYTQN 34 (129) Q Consensus 11 ~C~~Cg~KFYDlnk~PiiCP~CG~ 34 (129) .||+||. +.+.=-+|| ||. T Consensus 29 ~C~~CG~----~~~pH~vC~-cG~ 47 (56) T 3ofq_0 29 VDKTSGE----KHLRHHITA-DGY 47 (56) T ss_dssp CCSSSCC----CBCSSSCCT-TSB T ss_pred CCCCCCC----CCCCCEECC-CCC T ss_conf 6889998----605857889-988 No 134 >2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Probab=59.12 E-value=4.4 Score=20.07 Aligned_cols=27 Identities=11% Similarity=0.321 Sum_probs=15.9 Q ss_pred CCCCCCCEEEE-----------CCCCCCCCCCCCCEEC Q ss_conf 17888874421-----------4888722778987153 Q gi|254780459|r 11 TCPDTGKRFYD-----------LNKQVIVSPYTQNSWP 37 (129) Q Consensus 11 ~C~~Cg~KFYD-----------lnk~PiiCP~CG~e~~ 37 (129) .|+.||..|.. .+..|..|+.||..|. T Consensus 19 ~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~ 56 (106) T 2ee8_A 19 ICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFR 56 (106) T ss_dssp BCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCS T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCC T ss_conf 99999887098999999998738998821342244435 No 135 >2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Probab=58.85 E-value=4.1 Score=20.24 Aligned_cols=13 Identities=0% Similarity=0.008 Sum_probs=6.6 Q ss_pred CCCCCCCCCCEEC Q ss_conf 8722778987153 Q gi|254780459|r 25 QVIVSPYTQNSWP 37 (129) Q Consensus 25 ~PiiCP~CG~e~~ 37 (129) .|-.|+.||..|. T Consensus 11 Kpy~C~~C~k~F~ 23 (46) T 2emf_A 11 KHFECTECGKAFT 23 (46) T ss_dssp CCEECSSSCCEES T ss_pred CCCCCCCCCCCCC T ss_conf 7818989999666 No 136 >2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Probab=58.73 E-value=3.8 Score=20.49 Aligned_cols=11 Identities=9% Similarity=-0.040 Sum_probs=5.2 Q ss_pred CCCCCCCCCEE Q ss_conf 72277898715 Q gi|254780459|r 26 VIVSPYTQNSW 36 (129) Q Consensus 26 PiiCP~CG~e~ 36 (129) |-.|..||..| T Consensus 12 py~C~~C~k~F 22 (46) T 2eov_A 12 PYKCSDCGKSF 22 (46) T ss_dssp SCBCSSSCCBC T ss_pred CEECCCCCCEE T ss_conf 94899879881 No 137 >2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Probab=58.50 E-value=3.5 Score=20.72 Aligned_cols=12 Identities=8% Similarity=0.080 Sum_probs=5.7 Q ss_pred CCCCCCCCCCEE Q ss_conf 872277898715 Q gi|254780459|r 25 QVIVSPYTQNSW 36 (129) Q Consensus 25 ~PiiCP~CG~e~ 36 (129) .|-.|..||..| T Consensus 11 Kpy~C~~C~k~F 22 (46) T 2eoq_A 11 KPFKCDICGKSF 22 (46) T ss_dssp CSCCCSSSCCCC T ss_pred CCCCCCCCCCCC T ss_conf 885789898987 No 138 >1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Probab=58.44 E-value=3.7 Score=20.56 Aligned_cols=26 Identities=4% Similarity=0.055 Sum_probs=18.5 Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCEECH Q ss_conf 8311788887442148887227789871532 Q gi|254780459|r 8 TKRTCPDTGKRFYDLNKQVIVSPYTQNSWPL 38 (129) Q Consensus 8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~ 38 (129) ..-+||=|.--|+ +|+++| ||..|=- T Consensus 22 ~~l~CpIC~~~~~----~Pv~~~-CgH~FC~ 47 (116) T 1rmd_A 22 KSISCQICEHILA----DPVETS-CKHLFCR 47 (116) T ss_dssp HHTBCTTTCSBCS----SEEECT-TSCEEEH T ss_pred CCCCCCCCCCHHC----CCEECC-CCCCHHH T ss_conf 5878508392424----958658-9981319 No 139 >3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans} Probab=58.23 E-value=5.4 Score=19.56 Aligned_cols=32 Identities=9% Similarity=0.243 Sum_probs=23.5 Q ss_pred CCCCCCCCCEE----EECCCCCCCCCCCCCEECHHH Q ss_conf 31178888744----214888722778987153233 Q gi|254780459|r 9 KRTCPDTGKRF----YDLNKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 9 KR~C~~Cg~KF----YDlnk~PiiCP~CG~e~~~~~ 40 (129) -..||-.|... ++....-|+||..|..|++.. T Consensus 48 ~~~CpH~g~~L~~g~~~~~~~~i~CP~H~~~Fdl~t 83 (121) T 3gce_A 48 SNLCSHAEAYLDMGVFHAESLEIECPLHVGRFDVRT 83 (121) T ss_dssp ESBCSSSSCBGGGSEEETTTTEEECTTTCCEEETTT T ss_pred ECCCCCCCCCCCCCCEECCCCEEEECCCCCEEECCC T ss_conf 773998997841574864899999689998999999 No 140 >2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Probab=58.21 E-value=3.6 Score=20.62 Aligned_cols=30 Identities=7% Similarity=-0.012 Sum_probs=22.5 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCEECHHHHHCC Q ss_conf 11788887442148887227789871532331012 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEAP 44 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~~ 44 (129) -+||=|..-|+| |++.| ||+.|.-..+.+- T Consensus 107 ~~C~i~~~~m~d----Pv~~~-~ghty~~~~i~~~ 136 (179) T 2f42_A 107 LCGKISFELMRE----PCITP-SGITYDRKDIEEH 136 (179) T ss_dssp GBCTTTCSBCSS----EEECT-TSCEEEHHHHHHH T ss_pred HCCCCCCCCCCC----CEECC-CCCEECHHHHHHH T ss_conf 177465864768----41469-9797669999999 No 141 >1s1i_9 L37A, YL35, 60S ribosomal protein L43; 80S ribosome, 60S ribosomal subunit, EEF2, tRNA translocation, sordarin, cryo-EM; 11.70A {Saccharomyces cerevisiae} SCOP: i.1.1.1 Probab=57.90 E-value=3.2 Score=20.89 Aligned_cols=30 Identities=10% Similarity=0.243 Sum_probs=22.3 Q ss_pred CCCCCCCCCCCEEEECCCC---CCCCCCCCCEECH Q ss_conf 7831178888744214888---7227789871532 Q gi|254780459|r 7 GTKRTCPDTGKRFYDLNKQ---VIVSPYTQNSWPL 38 (129) Q Consensus 7 G~KR~C~~Cg~KFYDlnk~---PiiCP~CG~e~~~ 38 (129) -.|.+||.||.. -+.|. --.|-+||..|.- T Consensus 33 ~aky~Cp~Cgk~--~vkR~a~GIW~C~kC~~~~AG 65 (91) T 1s1i_9 33 HARYDCSFCGKK--TVKRGAAGIWTCSCCKKTVAG 65 (91) T ss_dssp SSCCCCTTTCSS--CCCEETTTEECCSSSCCCEEC T ss_pred CCCCCCCCCCCC--EEEEEEEEEEECCCCCCEEEC T ss_conf 688239899997--348998888687999988867 No 142 >2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Probab=57.69 E-value=4.6 Score=19.95 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=22.0 Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCEECHHHHH Q ss_conf 3117888874421488872277898715323310 Q gi|254780459|r 9 KRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~ 42 (129) .-+|+-|--.| +.|+++|.||+.|-..=+. T Consensus 15 ~~~C~IC~~~~----~~p~~~~~CgH~fc~~Ci~ 44 (74) T 2yur_A 15 ELLCLICKDIM----TDAVVIPCCGNSYCDECIR 44 (74) T ss_dssp GGSCSSSCCCC----TTCEECSSSCCEECTTHHH T ss_pred CCCCCCCCHHH----HCCEEECCCCCEECHHHHH T ss_conf 89996649175----0971848898999999999 No 143 >2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain elongation factor, alternative splicing, cytoplasm; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Probab=57.48 E-value=2.9 Score=21.21 Aligned_cols=30 Identities=10% Similarity=-0.044 Sum_probs=22.9 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCEECHHHHHCC Q ss_conf 11788887442148887227789871532331012 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEAP 44 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~~ 44 (129) -+||=|+.-|.| |++.| ||..|.-..+.+- T Consensus 30 ~~CpI~~~lm~d----PV~~~-~Ghtf~r~~I~~~ 59 (100) T 2kre_A 30 FRDPLMDTLMTD----PVRLP-SGTIMDRSIILRH 59 (100) T ss_dssp TBCTTTCSBCSS----EEEET-TTEEEEHHHHHHH T ss_pred CCCCCCCCHHCC----CEECC-CCCEEEHHHHHHH T ss_conf 597384884038----66768-9977757788888 No 144 >3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Probab=57.47 E-value=4.6 Score=19.95 Aligned_cols=26 Identities=19% Similarity=0.446 Sum_probs=18.4 Q ss_pred HCCCCCCCCCCCEEEECCCCCCCCCCCCCEE Q ss_conf 2783117888874421488872277898715 Q gi|254780459|r 6 LGTKRTCPDTGKRFYDLNKQVIVSPYTQNSW 36 (129) Q Consensus 6 lG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~ 36 (129) +-.+-.||-|..-| +.|++|| ||..| T Consensus 15 ~~~~~~C~IC~~~~----~~Pv~~~-CgH~f 40 (170) T 3hcs_A 15 LESKYECPICLMAL----REAVQTP-CGHRF 40 (170) T ss_dssp CCGGGBCTTTCSBC----SSEEECT-TSCEE T ss_pred CCCCCCCCCCCCHH----CCCEECC-CCCCC T ss_conf 99888997988431----1927878-99811 No 145 >2ckl_B Ubiquitin ligase protein RING2; BMI1, zinc, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 2h0d_B Probab=57.04 E-value=4.1 Score=20.29 Aligned_cols=27 Identities=11% Similarity=0.170 Sum_probs=18.6 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCEECHHHH Q ss_conf 1788887442148887227789871532331 Q gi|254780459|r 11 TCPDTGKRFYDLNKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~ 41 (129) +||=|-.-| +.|++.|.||+.|=..=+ T Consensus 56 ~C~IC~~~~----~~p~~~~~CgH~FC~~Ci 82 (165) T 2ckl_B 56 MCPICLDML----KNTMTTKECLHRFCADCI 82 (165) T ss_dssp BCTTTSSBC----SSEEEETTTCCEEEHHHH T ss_pred CCCCCCHHH----HCCCCCCCCCCEECHHHH T ss_conf 982688076----486635899997649999 No 146 >2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibitory protein; transcription regulation, Trp RNA-binding attenuation protein; 2.8A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C* Probab=56.50 E-value=2.8 Score=21.28 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=17.6 Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCE Q ss_conf 311788887442148887227789871 Q gi|254780459|r 9 KRTCPDTGKRFYDLNKQVIVSPYTQNS 35 (129) Q Consensus 9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e 35 (129) ..+||+|..-= .+.|--||+|+.- T Consensus 9 e~tcp~c~~~g---~~e~~pcp~c~~k 32 (53) T 2bx9_A 9 EVACPKCERAG---EIEGTPCPACSGK 32 (53) T ss_dssp EEECTTTTTSS---EETTEECTTTTTS T ss_pred CCCCCCCCCCC---CCCCCCCCCCCCC T ss_conf 00286766757---6379848644575 No 147 >2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Probab=56.40 E-value=4.2 Score=20.23 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=20.0 Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCEECHHHH Q ss_conf 311788887442148887227789871532331 Q gi|254780459|r 9 KRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~ 41 (129) .-+||=|...| ++|++.| ||+.|--.=+ T Consensus 19 ~l~CpIC~~~~----~~pv~~~-CgH~fC~~Ci 46 (85) T 2ecw_A 19 EVTCPICLELL----KEPVSAD-CNHSFCRACI 46 (85) T ss_dssp TTSCTTTCSCC----SSCEECT-TSCCBCHHHH T ss_pred CCCCCCCCCCC----CCEEECC-CCCCHHHHHH T ss_conf 39984948320----7806888-9973659999 No 148 >1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A* Probab=56.08 E-value=3.2 Score=20.96 Aligned_cols=18 Identities=11% Similarity=0.008 Sum_probs=13.7 Q ss_pred ECCCCCCCCCCCCCEECH Q ss_conf 148887227789871532 Q gi|254780459|r 21 DLNKQVIVSPYTQNSWPL 38 (129) Q Consensus 21 Dlnk~PiiCP~CG~e~~~ 38 (129) -+.-.|.+||-||+.+-- T Consensus 19 s~s~qpatcpic~avirq 36 (54) T 1yui_A 19 SQSEQPATCPICYAVIRQ 36 (54) T ss_dssp HTSSCCEECTTTCCEESS T ss_pred CCCCCCCCCCHHHHHHHH T ss_conf 323599777048999998 No 149 >1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Probab=55.92 E-value=2.8 Score=21.24 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=19.2 Q ss_pred CCCC--CCCCEEEE---CC-------CCCCCCCCCCCEECHHHH Q ss_conf 1178--88874421---48-------887227789871532331 Q gi|254780459|r 10 RTCP--DTGKRFYD---LN-------KQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 10 R~C~--~Cg~KFYD---ln-------k~PiiCP~CG~e~~~~~~ 41 (129) -.|+ .||..|.. |. -.|-.|+.||..|.-... T Consensus 6 f~C~~~~C~k~F~~~~~L~~H~~~H~~k~~~C~~C~k~F~~~~~ 49 (124) T 1ubd_C 6 IACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSK 49 (124) T ss_dssp EECCSTTCCCEESSHHHHHHHHGGGSCCCEECTTTCCEESSHHH T ss_pred EECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH T ss_conf 68997888871099999999999808998528979972242201 No 150 >2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A Probab=55.43 E-value=4.4 Score=20.07 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=15.6 Q ss_pred CCCCCCCC----------EEEECCCCCCCCCCCCC Q ss_conf 11788887----------44214888722778987 Q gi|254780459|r 10 RTCPDTGK----------RFYDLNKQVIVSPYTQN 34 (129) Q Consensus 10 R~C~~Cg~----------KFYDlnk~PiiCP~CG~ 34 (129) ..|.+||+ ||||-.|.+-.|++||. T Consensus 72 ~~C~~Cg~~~a~y~C~~C~l~dd~k~~yHC~~Cgi 106 (143) T 2dkt_A 72 QTCEDCSTLFGEYYCSICHLFDKDKRQYHCESCGI 106 (143) T ss_dssp SBCSSSCCBSCSEECSSSCCEECSSSEEEETTTTE T ss_pred CCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC T ss_conf 73878207888873100306457877414898884 No 151 >2j9u_B VPS36, vacuolar protein sorting-associated protein 36; MVB, zinc, CHMP, ESCRT, membrane, transport, NZF finger, HIV budding, zinc-finger; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1 Probab=55.20 E-value=7.2 Score=18.77 Aligned_cols=46 Identities=9% Similarity=0.065 Sum_probs=31.3 Q ss_pred CCCHHHCCCCCCCCCCCE-----EEECCC-CCCCCCCCCCEECHHHHHCCCC Q ss_conf 975222783117888874-----421488-8722778987153233101234 Q gi|254780459|r 1 MAKPELGTKRTCPDTGKR-----FYDLNK-QVIVSPYTQNSWPLAYFEAPTS 46 (129) Q Consensus 1 MaK~elG~KR~C~~Cg~K-----FYDlnk-~PiiCP~CG~e~~~~~~~~~~~ 46 (129) ||.+..=+.-+||-|++- =++-|- .+.+|-+||...+-+.+..+.. T Consensus 9 ~~~~~~vs~W~CPICM~~Net~~E~~~n~~p~p~C~NCGV~~DyeM~~~SI~ 60 (76) T 2j9u_B 9 MASADVVSTWVCPICMVSNETQGEFTKDTLPTPICINCGVPADYELTKSSIN 60 (76) T ss_dssp ------CEEEECTTTCCEEEESSCCCTTCSSCCBCTTTCCBCCHHHHGGGCB T ss_pred HCCCCEEEEECCCEEEEECCCEEEECCCCCCCCCCCCCCCCCCHHHHHCCEE T ss_conf 0134724564364126642100033046899996444687548766306168 No 152 >2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=55.00 E-value=1.8 Score=22.45 Aligned_cols=33 Identities=12% Similarity=0.178 Sum_probs=24.5 Q ss_pred CCCCCCCCCEEE---ECCC-CCCCCCCCCCEECHHHH Q ss_conf 311788887442---1488-87227789871532331 Q gi|254780459|r 9 KRTCPDTGKRFY---DLNK-QVIVSPYTQNSWPLAYF 41 (129) Q Consensus 9 KR~C~~Cg~KFY---Dlnk-~PiiCP~CG~e~~~~~~ 41 (129) -..|..||..|. .|.+ .|-.|..||..|.-... T Consensus 18 ~~~C~~Cgk~F~~~~~l~~~k~~~C~~C~k~F~~~s~ 54 (73) T 2ctu_A 18 SQKCSKCGIIFIRRSTLSRRKTPMCEKCRKDSCQEAA 54 (73) T ss_dssp EEECSSSCCEEECCCCCCCSSSCCCHHHHHTCSCCCS T ss_pred CEECCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHH T ss_conf 8128845525420342134477873508889597678 No 153 >1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Probab=54.96 E-value=5.3 Score=19.57 Aligned_cols=28 Identities=4% Similarity=0.082 Sum_probs=18.4 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCEECHHHHH Q ss_conf 17888874421488872277898715323310 Q gi|254780459|r 11 TCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~ 42 (129) .||=|.-.| +.|++.+.||+.|-..-+. T Consensus 24 ~C~IC~~~~----~~pv~l~~CgH~fC~~Ci~ 51 (117) T 1jm7_B 24 RCSRCTNIL----REPVCLGGCEHIFCSNCVS 51 (117) T ss_dssp SCSSSCSCC----SSCBCCCSSSCCBCTTTGG T ss_pred CCCCCCCCC----CCCEEECCCCCCCCHHHHH T ss_conf 957889421----5973857899954499999 No 154 >2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Probab=54.90 E-value=3.9 Score=20.42 Aligned_cols=36 Identities=14% Similarity=-0.129 Sum_probs=25.5 Q ss_pred CCCCCCCCCCEEEECC---------------CCCCCCCCCCCEECHHHHHC Q ss_conf 8311788887442148---------------88722778987153233101 Q gi|254780459|r 8 TKRTCPDTGKRFYDLN---------------KQVIVSPYTQNSWPLAYFEA 43 (129) Q Consensus 8 ~KR~C~~Cg~KFYDln---------------k~PiiCP~CG~e~~~~~~~~ 43 (129) ..-.|+-|+.+|...+ ..|..|+.||..|.-...++ T Consensus 17 ~~f~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~y~C~~C~~~f~~~~~L~ 67 (102) T 2ghf_A 17 GGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALS 67 (102) T ss_dssp SSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHH T ss_pred CCEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCHHHHH T ss_conf 698999999872866899998677667865767879899998408579973 No 155 >1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Probab=54.74 E-value=4.6 Score=19.94 Aligned_cols=32 Identities=9% Similarity=-0.015 Sum_probs=24.4 Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCEECHHHHHCC Q ss_conf 311788887442148887227789871532331012 Q gi|254780459|r 9 KRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEAP 44 (129) Q Consensus 9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~~ 44 (129) .-+||=|+.-| ++|++.|.||..|.-..+.+- T Consensus 22 ~~~CPI~~~lm----~dPV~~~~~~~tyer~~I~~~ 53 (98) T 1wgm_A 22 EFLDPIMSTLM----CDPVVLPSSRVTVDRSTIARH 53 (98) T ss_dssp TTBCTTTCSBC----SSEEECTTTCCEEEHHHHHHH T ss_pred HHCCCCHHHHH----HHHHHCCCCCCHHHHHHHHHH T ss_conf 61882715588----546664678606639999999 No 156 >3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} Probab=54.51 E-value=4.5 Score=20.04 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=17.3 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCEECH Q ss_conf 11788887442148887227789871532 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQVIVSPYTQNSWPL 38 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~~ 38 (129) |.|..|+.-+=+ =.||.||..+.. T Consensus 2 kAC~~C~~i~~~-----~~Cp~C~s~~t~ 25 (59) T 3lpe_B 2 RACLKCKYLTND-----EICPICHSPTSE 25 (59) T ss_dssp EEETTTCBEESS-----SBCTTTCCBEES T ss_pred CCCCCCCCCCCC-----CCCCCCCCCCCC T ss_conf 372319577178-----989694898877 No 157 >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Probab=54.24 E-value=2.2 Score=21.98 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=18.1 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCEE Q ss_conf 117888874421488872277898715 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQVIVSPYTQNSW 36 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~ 36 (129) ..|-.||- -|..+---||+||.+- T Consensus 582 krcrdcgy---qftedrescpkcgsen 605 (1054) T 1gku_B 582 KRCRDCGY---QFTEDRESCPKCGSEN 605 (1054) T ss_dssp C-------------------------- T ss_pred HHHHHCCC---CCCCCCCCCCCCCCCC T ss_conf 57875587---2465533486446655 No 158 >2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1 Probab=54.12 E-value=5.7 Score=19.41 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.4 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCC Q ss_conf 178888744214888722778987 Q gi|254780459|r 11 TCPDTGKRFYDLNKQVIVSPYTQN 34 (129) Q Consensus 11 ~C~~Cg~KFYDlnk~PiiCP~CG~ 34 (129) .|..|=+-..|+.| .-||+||. T Consensus 17 rC~aCf~~t~d~~k--~FCpkCGn 38 (79) T 2con_A 17 RCHGCFKTTSDMNR--VFCGHCGN 38 (79) T ss_dssp ECSSSCCEESCSSC--CSCSSSCC T ss_pred EEEECCCCCCCCCC--CCCCCCCC T ss_conf 64244669689666--32754798 No 159 >2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Probab=54.04 E-value=4.3 Score=20.13 Aligned_cols=13 Identities=8% Similarity=0.076 Sum_probs=6.1 Q ss_pred CCCCCCCCCCEEC Q ss_conf 8722778987153 Q gi|254780459|r 25 QVIVSPYTQNSWP 37 (129) Q Consensus 25 ~PiiCP~CG~e~~ 37 (129) .|-.|..||..|. T Consensus 9 Kpy~C~~Cgk~F~ 21 (45) T 2epq_A 9 KPYSCPVCGLRFK 21 (45) T ss_dssp CSSEETTTTEECS T ss_pred CCEECCCCCCCCC T ss_conf 7968998998066 No 160 >2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Probab=53.70 E-value=8 Score=18.49 Aligned_cols=29 Identities=7% Similarity=-0.025 Sum_probs=15.7 Q ss_pred CCCCCCCCEEEEC-----------CCCCCCCCCCCCEECH Q ss_conf 1178888744214-----------8887227789871532 Q gi|254780459|r 10 RTCPDTGKRFYDL-----------NKQVIVSPYTQNSWPL 38 (129) Q Consensus 10 R~C~~Cg~KFYDl-----------nk~PiiCP~CG~e~~~ 38 (129) ..|..|+..|.-. +..|-.|+.||..|.- T Consensus 37 ~~c~~C~~~f~~~~~l~~H~~~H~~~k~y~C~~C~~~f~~ 76 (96) T 2dmd_A 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRN 76 (96) T ss_dssp EECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESS T ss_pred EECCCCCCCCCCCCCHHHHHCEECCCCCCCCCCCCCEECC T ss_conf 1089788763434441123200068876317878975088 No 161 >2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A Probab=53.38 E-value=5.7 Score=19.40 Aligned_cols=17 Identities=0% Similarity=-0.140 Sum_probs=10.8 Q ss_pred CCCCCCCCCCCEECHHH Q ss_conf 88722778987153233 Q gi|254780459|r 24 KQVIVSPYTQNSWPLAY 40 (129) Q Consensus 24 k~PiiCP~CG~e~~~~~ 40 (129) ..|-.|..||..|.-.. T Consensus 10 EKpy~C~~CgK~F~~~~ 26 (46) T 2ema_A 10 EKRYKCNECGKVFSRNS 26 (46) T ss_dssp SCCEECSSSCCEESSHH T ss_pred CCCEECCCCCCEECCHH T ss_conf 98948999898628788 No 162 >2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens} Probab=52.98 E-value=7.8 Score=18.56 Aligned_cols=32 Identities=28% Similarity=0.505 Sum_probs=20.8 Q ss_pred CCCCCCCCEEE----ECCC--CCCCCCCCCCE----ECHHHHH Q ss_conf 11788887442----1488--87227789871----5323310 Q gi|254780459|r 10 RTCPDTGKRFY----DLNK--QVIVSPYTQNS----WPLAYFE 42 (129) Q Consensus 10 R~C~~Cg~KFY----Dlnk--~PiiCP~CG~e----~~~~~~~ 42 (129) +-|| ||-+|- +|.. .-+.||+|.-. |.++.+. T Consensus 24 ypCr-CGd~F~It~~dL~~ge~v~~C~sCSL~IrVifd~e~~~ 65 (89) T 2jr7_A 24 YPCP-CGDNFSITKEDLENGEDVATCPSCSLIIKVIYDKDQFV 65 (89) T ss_dssp EECT-TSSEEEEEHHHHHHTCCEEECTTTCCEEEEECCHHHHC T ss_pred ECCC-CCCEEEECHHHHHCCCEEEECCCCCCEEEEEECHHHCC T ss_conf 5378-89988987999858994996899962899997577855 No 163 >2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=52.45 E-value=7.6 Score=18.63 Aligned_cols=28 Identities=21% Similarity=0.501 Sum_probs=15.3 Q ss_pred CCCCCCCCEEEE------CCC-CCCCCCCCCCEEC Q ss_conf 117888874421------488-8722778987153 Q gi|254780459|r 10 RTCPDTGKRFYD------LNK-QVIVSPYTQNSWP 37 (129) Q Consensus 10 R~C~~Cg~KFYD------lnk-~PiiCP~CG~e~~ 37 (129) ..|+.||-.|-- |++ ....||.|.+.|+ T Consensus 29 ~~~~~C~H~fh~~Ci~~w~~~~~~~~CP~Cr~~~~ 63 (74) T 2ct0_A 29 QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74) T ss_dssp EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC T ss_pred CEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 88699998338899999998568973988878271 No 164 >2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Probab=52.45 E-value=4.8 Score=19.88 Aligned_cols=33 Identities=12% Similarity=0.003 Sum_probs=21.5 Q ss_pred CCCCCCCCEEEEC-----------CCCCCCCCCCCCEECHHHHH Q ss_conf 1178888744214-----------88872277898715323310 Q gi|254780459|r 10 RTCPDTGKRFYDL-----------NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 10 R~C~~Cg~KFYDl-----------nk~PiiCP~CG~e~~~~~~~ 42 (129) -.|..||..|... +..|..|+.||..|.-...+ T Consensus 38 ~~C~~C~~~f~~~~~l~~H~~~H~~~k~~~C~~C~k~f~~~~~L 81 (110) T 2csh_A 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF 81 (110) T ss_dssp EECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHH T ss_pred EECCCCCCCCCCHHHHHCCCCEECCCCCEECCCCCCEECCHHHH T ss_conf 46885565433201443200101798080898999997988999 No 165 >3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) sequence RTPA; anti-trap, tryptophan RNA-binding attenuation protein; 2.06A {Bacillus licheniformis} PDB: 3ld0_A Probab=52.14 E-value=5.5 Score=19.51 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=16.3 Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCE Q ss_conf 311788887442148887227789871 Q gi|254780459|r 9 KRTCPDTGKRFYDLNKQVIVSPYTQNS 35 (129) Q Consensus 9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e 35 (129) ..+||+|..-=-- .|--||+|+.- T Consensus 9 e~tcp~c~~~g~~---e~~pcp~c~~k 32 (53) T 3lcz_A 9 ETTCPNCNGSGRE---EPEPCPKCLGK 32 (53) T ss_dssp EEECTTTTTSCEE---TTEECTTTTTS T ss_pred CCCCCCCCCCCCC---CCCCCCCCCCC T ss_conf 0028676675762---79838634575 No 166 >2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Probab=52.11 E-value=6.2 Score=19.19 Aligned_cols=16 Identities=6% Similarity=0.019 Sum_probs=10.1 Q ss_pred CCCCCCCCCCCEECHH Q ss_conf 8872277898715323 Q gi|254780459|r 24 KQVIVSPYTQNSWPLA 39 (129) Q Consensus 24 k~PiiCP~CG~e~~~~ 39 (129) ..|-.|..||..|.-. T Consensus 10 eKpy~C~~Cgk~F~~~ 25 (46) T 2ep2_A 10 EKPYECSICGKSFTKK 25 (46) T ss_dssp CCSEECSSSCCEESSH T ss_pred CCCEECCCCCCEECCH T ss_conf 9696789879970877 No 167 >2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=51.88 E-value=7.2 Score=18.77 Aligned_cols=35 Identities=11% Similarity=0.185 Sum_probs=24.2 Q ss_pred HHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEECHHHHHC Q ss_conf 2227831178888744214888722778987153233101 Q gi|254780459|r 4 PELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEA 43 (129) Q Consensus 4 ~elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~ 43 (129) .++.....||-|.-.| ++|++-| ||+.|=..=+.+ T Consensus 10 ~~l~~~~~C~IC~~~~----~~pv~~~-CgH~fC~~Ci~~ 44 (58) T 2ecj_A 10 ENLQVEASCSVCLEYL----KEPVIIE-CGHNFCKACITR 44 (58) T ss_dssp SCSCCCCBCSSSCCBC----SSCCCCS-SCCCCCHHHHHH T ss_pred HHCCCCCCCCCCCCCC----CCCEEEC-CCCCHHHHHHHH T ss_conf 8472279986737402----8938906-997666999999 No 168 >2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Probab=51.42 E-value=4.7 Score=19.93 Aligned_cols=16 Identities=0% Similarity=-0.039 Sum_probs=9.7 Q ss_pred CCCCCCCCCCCEECHH Q ss_conf 8872277898715323 Q gi|254780459|r 24 KQVIVSPYTQNSWPLA 39 (129) Q Consensus 24 k~PiiCP~CG~e~~~~ 39 (129) ..|-.|..||..|.-. T Consensus 10 Ekpy~C~~C~k~F~~~ 25 (46) T 2en1_A 10 EKPFKCEECGKRFTQN 25 (46) T ss_dssp CCSEEETTTTEEESSH T ss_pred CCCEECCCCCCCCCCH T ss_conf 7897899989956778 No 169 >2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Probab=51.36 E-value=5.5 Score=19.49 Aligned_cols=16 Identities=0% Similarity=-0.137 Sum_probs=9.9 Q ss_pred CCCCCCCCCCCEECHH Q ss_conf 8872277898715323 Q gi|254780459|r 24 KQVIVSPYTQNSWPLA 39 (129) Q Consensus 24 k~PiiCP~CG~e~~~~ 39 (129) -.|-.|..||..|.-. T Consensus 10 EKpy~C~~Cgk~F~~~ 25 (46) T 2epz_A 10 EKPFDCIDCGKAFSDH 25 (46) T ss_dssp CCSBCCTTTCCCBSSH T ss_pred CCCEECCCCCCEECCH T ss_conf 9696899989970878 No 170 >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Probab=51.35 E-value=5.4 Score=19.55 Aligned_cols=27 Identities=15% Similarity=0.360 Sum_probs=18.8 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCEECH Q ss_conf 11788887442148887227789871532 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQVIVSPYTQNSWPL 38 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~~ 38 (129) =+||.|+..+. +...-++|++| ..|++ T Consensus 3 ~~CP~C~~~L~-~~~~~l~C~~~-h~fd~ 29 (269) T 1p91_A 3 FSCPLCHQPLS-REKNSYICPQR-HQFDM 29 (269) T ss_dssp BBCTTTCCBCE-EETTEEECTTC-CEEEB T ss_pred EECCCCCCCCC-CCCCEEECCCC-CCCCC T ss_conf 74889992101-68987983899-52165 No 171 >2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=51.20 E-value=6.1 Score=19.19 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=18.7 Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCEECHH Q ss_conf 83117888874421488872277898715323 Q gi|254780459|r 8 TKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~ 39 (129) ..-+||-|-..| ++|++.| ||+.|--. T Consensus 18 ~~l~CpIC~~~~----~~pv~~~-CgH~fC~~ 44 (85) T 2ecv_A 18 EEVTCPICLELL----TQPLSLD-CGHSFCQA 44 (85) T ss_dssp CCCCCTTTCSCC----SSCBCCS-SSCCBCTT T ss_pred CCCCCCCCCCHH----CCEEECC-CCCCHHHH T ss_conf 058993759230----8907868-98746199 No 172 >2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-binding, ssDNA binding; 2.8A {Sulfolobus solfataricus} Probab=50.72 E-value=8.7 Score=18.28 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=15.6 Q ss_pred CCCCCCCEEEEC--------CCCCCCCCCCCCE Q ss_conf 178888744214--------8887227789871 Q gi|254780459|r 11 TCPDTGKRFYDL--------NKQVIVSPYTQNS 35 (129) Q Consensus 11 ~C~~Cg~KFYDl--------nk~PiiCP~CG~e 35 (129) .|..|+..|.-- -..|-.||+||.. T Consensus 145 ~~~~c~~~~~~~~~~~~~~~~~~p~~C~~c~~~ 177 (268) T 2vl6_A 145 IHPDCMQEFEWPEDEEMPEVLEMPTICPKCGKP 177 (268) T ss_dssp ECTTCCCEEESSTTSCCCTTCCCCSBCTTTCCB T ss_pred EECCCCEEEEECCCCCCCCCCCCCCCCCCCCCC T ss_conf 707984289956652036656787647888989 No 173 >2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Probab=50.64 E-value=8 Score=18.50 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=18.6 Q ss_pred CCHHHCCCC----CCCCCCCEEEE---C--------CCCCCCCCCCCC Q ss_conf 752227831----17888874421---4--------888722778987 Q gi|254780459|r 2 AKPELGTKR----TCPDTGKRFYD---L--------NKQVIVSPYTQN 34 (129) Q Consensus 2 aK~elG~KR----~C~~Cg~KFYD---l--------nk~PiiCP~CG~ 34 (129) +.|.+..|| .||.||..|.. | ...|..|+.|+- T Consensus 6 ~~~~~~~~r~~~C~~p~C~k~F~~~~~L~~H~r~H~~~~~~~c~~~~~ 53 (100) T 2ebt_A 6 SGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGC 53 (100) T ss_dssp CCCCCCSCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSC T ss_pred CCCCCCCCCCEECCCCCCCCEECCHHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 899878888978989999898699999999988608998811444456 No 174 >2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=50.27 E-value=4.8 Score=19.86 Aligned_cols=15 Identities=33% Similarity=0.638 Sum_probs=10.6 Q ss_pred HCCCCCCCCCCCEEE Q ss_conf 278311788887442 Q gi|254780459|r 6 LGTKRTCPDTGKRFY 20 (129) Q Consensus 6 lG~KR~C~~Cg~KFY 20 (129) -|+-+.|--||+||- T Consensus 6 s~k~hlcdlcgkkfk 20 (36) T 2elr_A 6 SGKTHLCDMCGKKFK 20 (36) T ss_dssp CCSSCBCTTTCCBCS T ss_pred CCCCCHHHHHHHHHH T ss_conf 776215876603440 No 175 >3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Probab=50.08 E-value=6.6 Score=18.99 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=19.1 Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCEECHH Q ss_conf 83117888874421488872277898715323 Q gi|254780459|r 8 TKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~ 39 (129) -.-+|+-|..-| ++|+++| ||..|=.. T Consensus 17 ~~l~C~IC~~~~----~~Pv~~~-CgH~fC~~ 43 (118) T 3hct_A 17 SKYECPICLMAL----REAVQTP-CGHRFCKA 43 (118) T ss_dssp GGGBCTTTCSBC----SSEEECT-TSCEEEHH T ss_pred CCCCCCCCCCHH----CCCEECC-CCCHHHHH T ss_conf 988997969451----0949957-99617099 No 176 >1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Probab=49.92 E-value=5.6 Score=19.44 Aligned_cols=29 Identities=10% Similarity=0.044 Sum_probs=20.4 Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCEECHHHH Q ss_conf 8311788887442148887227789871532331 Q gi|254780459|r 8 TKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~ 41 (129) ..-+|+-|...| ++|++.| ||+.|-..=+ T Consensus 5 ~~l~C~IC~~~~----~~p~~l~-CgH~Fc~~Cl 33 (56) T 1bor_A 5 QFLRCQQCQAEA----KCPKLLP-CLHTLCSGCL 33 (56) T ss_dssp CCSSCSSSCSSC----BCCSCST-TSCCSBTTTC T ss_pred CCCCCCCCCCCC----CCCEEEC-CCCHHHHHHH T ss_conf 688997368506----8988931-8777879988 No 177 >1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1 Probab=49.86 E-value=8.8 Score=18.24 Aligned_cols=30 Identities=7% Similarity=-0.075 Sum_probs=17.3 Q ss_pred CCCCCCCCEEEECCCC-C-CCCCCCCCEECHH Q ss_conf 1178888744214888-7-2277898715323 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQ-V-IVSPYTQNSWPLA 39 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~-P-iiCP~CG~e~~~~ 39 (129) .+||-|.-+|..=++. + +-|+.||+.|=.. T Consensus 17 ~~C~IC~e~~~~~~~~~~f~~C~~Cgh~~C~~ 48 (93) T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRP 48 (93) T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHH T ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCHHHHH T ss_conf 99868644013389999565666467667399 No 178 >1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Probab=49.13 E-value=7.2 Score=18.78 Aligned_cols=28 Identities=7% Similarity=-0.049 Sum_probs=20.6 Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCEECHHHH Q ss_conf 311788887442148887227789871532331 Q gi|254780459|r 9 KRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~ 41 (129) ...|+-|=..| ++|++.| ||+.|-..=+ T Consensus 78 ~~~C~IC~~~~----~~pv~~~-CgH~fC~~Ci 105 (150) T 1z6u_A 78 SFMCVCCQELV----YQPVTTE-CFHNVCKDCL 105 (150) T ss_dssp HTBCTTTSSBC----SSEEECT-TSCEEEHHHH T ss_pred CCCCCCCCCCC----CCCEECC-CCCCCCHHHH T ss_conf 69995848504----7947889-9982219999 No 179 >3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Probab=49.12 E-value=7.2 Score=18.77 Aligned_cols=29 Identities=10% Similarity=0.108 Sum_probs=21.6 Q ss_pred HCCCCCCCCCCCEEEECCCCCCCCCCCCCEECHH Q ss_conf 2783117888874421488872277898715323 Q gi|254780459|r 6 LGTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 6 lG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~ 39 (129) +.-|-+|+=|.--|+ +|+++| ||..|=-. T Consensus 28 ~~e~~~C~IC~~~~~----~Pv~~~-CgH~FC~~ 56 (141) T 3knv_A 28 LEAKYLCSACRNVLR----RPFQAQ-CGHRYCSF 56 (141) T ss_dssp CCGGGBCTTTCSBCS----SEEECT-TSCEEEHH T ss_pred CCCCCCCCCCCCCCC----CCCCCC-CCCHHHHH T ss_conf 999889988981116----958878-99656099 No 180 >1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1 Probab=48.64 E-value=5.5 Score=19.49 Aligned_cols=27 Identities=11% Similarity=0.224 Sum_probs=19.5 Q ss_pred CCCCCCCCEEEE-CCCCCCCC--CCCCCEE Q ss_conf 117888874421-48887227--7898715 Q gi|254780459|r 10 RTCPDTGKRFYD-LNKQVIVS--PYTQNSW 36 (129) Q Consensus 10 R~C~~Cg~KFYD-lnk~PiiC--P~CG~e~ 36 (129) |.||+|++.+-- -+-.=++| +.||+.| T Consensus 7 K~CP~C~~~IeK~~GCnhm~C~~~~C~~~F 36 (60) T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEF 36 (60) T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCC T ss_pred CCCCCCCCEEEECCCCCCEEECCCCCCCEE T ss_conf 599699998886889886597899999809 No 181 >2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=48.44 E-value=10 Score=17.81 Aligned_cols=30 Identities=10% Similarity=0.179 Sum_probs=21.3 Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCEECHHHHH Q ss_conf 83117888874421488872277898715323310 Q gi|254780459|r 8 TKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~ 42 (129) ..-+||-|--.| ++|++-| ||+.|=..=+. T Consensus 19 ~~~~C~IC~~~~----~~pv~~~-CgH~fC~~Ci~ 48 (63) T 2ysj_A 19 EEVICPICLDIL----QKPVTID-CGHNFCLKCIT 48 (63) T ss_dssp CCCBCTTTCSBC----SSCEECT-TSSEECHHHHH T ss_pred CCCCCCCCCCCC----CCEEEEC-CCCCHHHHHHH T ss_conf 068987748403----8938807-99843199999 No 182 >2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1} Probab=48.22 E-value=6.2 Score=19.16 Aligned_cols=18 Identities=0% Similarity=0.158 Sum_probs=13.5 Q ss_pred ECCCCCCCCCCCCCEECH Q ss_conf 148887227789871532 Q gi|254780459|r 21 DLNKQVIVSPYTQNSWPL 38 (129) Q Consensus 21 Dlnk~PiiCP~CG~e~~~ 38 (129) +--..-++||.|+-.|++ T Consensus 48 d~~~~~Lic~~~~~~YPI 65 (97) T 2k5r_A 48 QSLHEALITRDRKQVFRI 65 (97) T ss_dssp CCCSEEEECTTSCEEEEE T ss_pred CHHCCEEECCCCCEEEEC T ss_conf 410283874655877062 No 183 >2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} Probab=47.84 E-value=5.7 Score=19.40 Aligned_cols=11 Identities=27% Similarity=0.534 Sum_probs=7.9 Q ss_pred CCCCCCCCCCE Q ss_conf 83117888874 Q gi|254780459|r 8 TKRTCPDTGKR 18 (129) Q Consensus 8 ~KR~C~~Cg~K 18 (129) .|.+||+|++. T Consensus 13 ~~~~c~~c~~~ 23 (155) T 2ppt_A 13 LRLTCLACGQA 23 (155) T ss_dssp EEEECTTTCCE T ss_pred EEEECCCCCCC T ss_conf 07889598755 No 184 >1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D- structure; 3.30A {Thermus aquaticus} SCOP: i.8.1.1 PDB: 1i6v_D* 2gho_D Probab=47.78 E-value=4.6 Score=19.98 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=9.6 Q ss_pred CCCCCCCEEEECCCC-CCCCCCCCCEE Q ss_conf 178888744214888-72277898715 Q gi|254780459|r 11 TCPDTGKRFYDLNKQ-VIVSPYTQNSW 36 (129) Q Consensus 11 ~C~~Cg~KFYDlnk~-PiiCP~CG~e~ 36 (129) .| +||+ |+-.|. .++|.-||.++ T Consensus 57 ~C-~cg~--~~~~~~~~~~C~tCg~~~ 80 (1265) T 1hqm_D 57 EC-ACGK--YKRQRFEGKVCERCGVEV 80 (1265) T ss_dssp ---------------CCSCSSSSSSSS T ss_pred EE-CCCC--CCCCCCCCCCCCCCCCCC T ss_conf 26-6876--000125884779999898 No 185 >2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=47.29 E-value=7.9 Score=18.52 Aligned_cols=28 Identities=11% Similarity=0.059 Sum_probs=15.8 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCEECHH Q ss_conf 17888874421488872277898715323 Q gi|254780459|r 11 TCPDTGKRFYDLNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~ 39 (129) .||-|...|-+=++.|++. .||+.|=.. T Consensus 17 ~C~IC~~~~~~~~~~p~~l-~CgH~fC~~ 44 (88) T 2ct2_A 17 ECPICMESFTEEQLRPKLL-HCGHTICRQ 44 (88) T ss_dssp BCTTTCCBCCTTSSCEEEC-SSSCEEEHH T ss_pred CCCCCCCCCCCCCCCCEEC-CCCCEEHHH T ss_conf 9914691011765454735-899800199 No 186 >2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=46.48 E-value=5.5 Score=19.50 Aligned_cols=17 Identities=6% Similarity=0.047 Sum_probs=11.4 Q ss_pred CCCCCCCCCEECHHHHH Q ss_conf 72277898715323310 Q gi|254780459|r 26 VIVSPYTQNSWPLAYFE 42 (129) Q Consensus 26 PiiCP~CG~e~~~~~~~ 42 (129) |-.||+|...|.+...+ T Consensus 12 ~raCPkCn~~Fnl~dpL 28 (49) T 2e72_A 12 RKICPRCNAQFRVTEAL 28 (49) T ss_dssp CCCCTTTCCCCSSHHHH T ss_pred CCCCCCCCCEEECCHHH T ss_conf 75487445424550777 No 187 >2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious disease, electron transport; NMR {Mycobacterium tuberculosis} Probab=45.49 E-value=7.6 Score=18.62 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=17.4 Q ss_pred CCCCCCCCCCEEEECCC---------------CC--CCCCCCCCE Q ss_conf 83117888874421488---------------87--227789871 Q gi|254780459|r 8 TKRTCPDTGKRFYDLNK---------------QV--IVSPYTQNS 35 (129) Q Consensus 8 ~KR~C~~Cg~KFYDlnk---------------~P--iiCP~CG~e 35 (129) +|-+|+.||-- ||=.+ -| =+||-||+. T Consensus 26 ~~y~C~~Cgyi-YDp~~GD~~~gippGT~F~dLP~dw~CP~Cga~ 69 (81) T 2kn9_A 26 KLFRCIQCGFE-YDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAA 69 (81) T ss_dssp CEEEETTTCCE-EETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCC T ss_pred CEEECCCCCEE-ECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC T ss_conf 75982999938-766658845687988976578988869299983 No 188 >1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A* Probab=45.05 E-value=8.1 Score=18.47 Aligned_cols=30 Identities=10% Similarity=-0.069 Sum_probs=20.4 Q ss_pred CCCCCCCCCEEEEC--------CCCCCCCCCCCCEECH Q ss_conf 31178888744214--------8887227789871532 Q gi|254780459|r 9 KRTCPDTGKRFYDL--------NKQVIVSPYTQNSWPL 38 (129) Q Consensus 9 KR~C~~Cg~KFYDl--------nk~PiiCP~CG~e~~~ 38 (129) +-.|..|+.+|.-. .+.|..||.||...-| T Consensus 123 ~~~C~~c~~~~~~~~~~~~~~~~~~~~~c~~c~~~lrP 160 (253) T 1ma3_A 123 KLDCLDCHETYDWSEFVEDFNKGEIPRCRKCGSYYVKP 160 (253) T ss_dssp EEEETTTCCEEEGGGTHHHHHTTCCCCCTTTCCSCEEE T ss_pred CCEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC T ss_conf 34106643344200234544136778865466876998 No 189 >2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, electron transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa} Probab=44.90 E-value=8.8 Score=18.23 Aligned_cols=27 Identities=26% Similarity=0.234 Sum_probs=16.6 Q ss_pred CCCCCCCCCCEEEECCC---------------CC--CCCCCCCCE Q ss_conf 83117888874421488---------------87--227789871 Q gi|254780459|r 8 TKRTCPDTGKRFYDLNK---------------QV--IVSPYTQNS 35 (129) Q Consensus 8 ~KR~C~~Cg~KFYDlnk---------------~P--iiCP~CG~e 35 (129) .|-+|+.||- -||-.+ -| =+||-||+. T Consensus 2 ~~y~C~~Cgy-iYd~~~Gd~~~~i~pGT~F~~lP~dw~CP~C~a~ 45 (55) T 2v3b_B 2 RKWQCVVCGF-IYDEALGLPEEGIPAGTRWEDIPADWVCPDCGVG 45 (55) T ss_dssp CEEEETTTCC-EEETTTCBTTTTBCTTCCGGGSCTTCCCTTTCCC T ss_pred CCEECCCCCE-EECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC T ss_conf 8769299991-8885558845686989996888898769599983 No 190 >3k35_A Mono-ADP-ribosyltransferase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, structural genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens} Probab=44.86 E-value=7 Score=18.86 Aligned_cols=30 Identities=3% Similarity=0.077 Sum_probs=18.4 Q ss_pred CCCCCCCCEEE------ECC----------CCCCCCCCCCCEECHH Q ss_conf 11788887442------148----------8872277898715323 Q gi|254780459|r 10 RTCPDTGKRFY------DLN----------KQVIVSPYTQNSWPLA 39 (129) Q Consensus 10 R~C~~Cg~KFY------Dln----------k~PiiCP~CG~e~~~~ 39 (129) -.|.+|+.+|. .+. .....||.||...-|. T Consensus 139 ~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~C~G~lrP~ 184 (318) T 3k35_A 139 EECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGELRDT 184 (318) T ss_dssp EEETTTCCEEECSSCCSCCSSCEEEEECCC--------CCCEEEEC T ss_pred EEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 9989999863477755665135777656422356764468856897 No 191 >3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} Probab=44.77 E-value=4.4 Score=20.05 Aligned_cols=18 Identities=11% Similarity=0.185 Sum_probs=10.8 Q ss_pred CCCCCCCCCC-EECHHHHH Q ss_conf 8722778987-15323310 Q gi|254780459|r 25 QVIVSPYTQN-SWPLAYFE 42 (129) Q Consensus 25 ~PiiCP~CG~-e~~~~~~~ 42 (129) .-|-||.||. .|++..+. T Consensus 270 ~~ISCP~CGRt~~dl~~~~ 288 (366) T 3noy_A 270 EIVACPTCGRIEVDLPKVV 288 (366) T ss_dssp EEEECCCCTTCCSCHHHHH T ss_pred CCCCCCCCCCCCHHHHHHH T ss_conf 7131799776501199999 No 192 >2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Probab=44.51 E-value=11 Score=17.62 Aligned_cols=34 Identities=15% Similarity=0.349 Sum_probs=23.2 Q ss_pred CCCC--CCCCCEEEE---C--------CCCCCCCC--CCCCEECHHHHH Q ss_conf 3117--888874421---4--------88872277--898715323310 Q gi|254780459|r 9 KRTC--PDTGKRFYD---L--------NKQVIVSP--YTQNSWPLAYFE 42 (129) Q Consensus 9 KR~C--~~Cg~KFYD---l--------nk~PiiCP--~CG~e~~~~~~~ 42 (129) ..+| +.||+.|.- | +..|..|| .||..|.-...+ T Consensus 17 ~~~C~~~~C~k~F~~~~~L~~H~~~h~~~~~~~C~~~~C~k~F~~~~~L 65 (72) T 2epa_A 17 SHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDEL 65 (72) T ss_dssp CEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHH T ss_pred CEECCCCCCCCEECCHHHHHHHHHHCCCCCCEECCCCCCCCEECCHHHH T ss_conf 9689899999876999999878651069978678877789970788999 No 193 >1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B Probab=44.39 E-value=4.4 Score=20.10 Aligned_cols=13 Identities=0% Similarity=-0.151 Sum_probs=7.6 Q ss_pred CCCCCCCCCEECH Q ss_conf 7227789871532 Q gi|254780459|r 26 VIVSPYTQNSWPL 38 (129) Q Consensus 26 PiiCP~CG~e~~~ 38 (129) -.+||-||--|.- T Consensus 8 rf~c~pcgirfss 20 (36) T 1fv5_A 8 RFMCLPCGIAFSS 20 (36) T ss_dssp CCEETTTTEECSC T ss_pred CEECCCCCEEECC T ss_conf 1622775404257 No 194 >2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Probab=44.36 E-value=8.2 Score=18.42 Aligned_cols=32 Identities=16% Similarity=0.132 Sum_probs=19.3 Q ss_pred HHCCCCCCCCCCCEEEECCCCCCCCCCCCCEECHHHH Q ss_conf 2278311788887442148887227789871532331 Q gi|254780459|r 5 ELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 5 elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~ 41 (129) ++-..-+||-|.-.| +.|++.| ||+.|=-.=+ T Consensus 8 ~i~~~l~C~IC~~~~----~~pv~~~-CgH~fC~~Ci 39 (79) T 2egp_A 8 NVQEEVTCPICLELL----TEPLSLD-CGHSLCRACI 39 (79) T ss_dssp CCCCCCEETTTTEEC----SSCCCCS-SSCCCCHHHH T ss_pred CCCCCCCCCCCCCCC----CCCEECC-CCCCHHHHHH T ss_conf 675268995779311----6807768-9887889999 No 195 >1x3z_A Peptide:N-glycanase; protein-protein-inhibitor complex, hydrolase; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A* Probab=43.72 E-value=9.9 Score=17.94 Aligned_cols=46 Identities=13% Similarity=0.057 Sum_probs=29.4 Q ss_pred HHCCCCCCCCCCCEE-E---ECCCC-C--------------CCCCCCCCE--E----CHHHHHCCCCCCCC Q ss_conf 227831178888744-2---14888-7--------------227789871--5----32331012344344 Q gi|254780459|r 5 ELGTKRTCPDTGKRF-Y---DLNKQ-V--------------IVSPYTQNS--W----PLAYFEAPTSPEKE 50 (129) Q Consensus 5 elG~KR~C~~Cg~KF-Y---Dlnk~-P--------------iiCP~CG~e--~----~~~~~~~~~~~~~~ 50 (129) .|=.|-.|+.||.+= | -++.. | -.|+.||+. | .|..++..|+||-+ T Consensus 115 ~wvn~p~C~~Cg~~t~~~~~~~g~~~pt~~e~~~~a~~vE~y~C~~C~~~~RFPRyn~p~~lL~tr~GrCg 185 (335) T 1x3z_A 115 KWCNKPDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCNRCGNITRFPRYNDPIKLLETRKGRCG 185 (335) T ss_dssp EECSSCCCSSSCSSCCSSEEEEEEECCCSGGGSSSEEEEEEEEETTTCCEEEEEEECCHHHHHHHCEECHH T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCHH T ss_conf 75599999867998623423567789991565378886999989999986046886988999875162178 No 196 >3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Probab=43.55 E-value=14 Score=17.08 Aligned_cols=31 Identities=16% Similarity=0.354 Sum_probs=16.7 Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCEECHHH Q ss_conf 31178888744214888722778987153233 Q gi|254780459|r 9 KRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~ 40 (129) ..+|...=+.-|- +..-+.||+||+.|.+.. T Consensus 262 f~iCa~s~tpIy~-g~~~v~Cp~cgA~y~~~~ 292 (320) T 3mkr_B 262 FDICAASYRPIYR-GKPVEKCPLSGACYSPEF 292 (320) T ss_dssp CCBBTTTCCBCCT-TSCCEECTTTCCEECGGG T ss_pred CEEECCCCEECCC-CCCCCCCCCCCCEECHHH T ss_conf 3063167557249-999704589788625744 No 197 >1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Probab=43.30 E-value=7.6 Score=18.62 Aligned_cols=20 Identities=10% Similarity=0.044 Sum_probs=14.0 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +-.|-.|+.||..|.-...+ T Consensus 8 gekPy~C~~Cgk~F~~~~~L 27 (37) T 1p7a_A 8 GIKPFQCPDCDRSFSRSDHL 27 (37) T ss_dssp CSSSBCCTTTCCCBSSHHHH T ss_pred CCCCEECCCCCCEECCHHHH T ss_conf 88894789999991778888 No 198 >2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=43.10 E-value=8.8 Score=18.23 Aligned_cols=18 Identities=11% Similarity=0.141 Sum_probs=12.8 Q ss_pred CCCCCCC-CCCEECHHHHH Q ss_conf 8722778-98715323310 Q gi|254780459|r 25 QVIVSPY-TQNSWPLAYFE 42 (129) Q Consensus 25 ~PiiCP~-CG~e~~~~~~~ 42 (129) .+|.||. ||+.|....+. T Consensus 36 ~~i~C~~~Cg~~~~r~~l~ 54 (100) T 2yre_A 36 DLIGCPLVCGAVFHSCKAD 54 (100) T ss_dssp CEEECTTCCSCEEEHHHHH T ss_pred EECCCCCCCCCCCCHHHHH T ss_conf 2356888655720276999 No 199 >1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A Probab=42.03 E-value=7.2 Score=18.77 Aligned_cols=16 Identities=6% Similarity=0.067 Sum_probs=11.5 Q ss_pred CCCCCCCCCCEECHHH Q ss_conf 8722778987153233 Q gi|254780459|r 25 QVIVSPYTQNSWPLAY 40 (129) Q Consensus 25 ~PiiCP~CG~e~~~~~ 40 (129) .|-.|+.||..|.-.. T Consensus 1 Kp~~C~~C~k~F~~~~ 16 (29) T 1ard_A 1 RSFVCEVCTRAFARQE 16 (29) T ss_dssp CCCBCTTTCCBCSSHH T ss_pred CCCCCCCCCCCCCCHH T ss_conf 9836889879987705 No 200 >2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens} Probab=41.94 E-value=7.2 Score=18.79 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=10.0 Q ss_pred CCCCCCCCCCCEEEEC Q ss_conf 7831178888744214 Q gi|254780459|r 7 GTKRTCPDTGKRFYDL 22 (129) Q Consensus 7 G~KR~C~~Cg~KFYDl 22 (129) .-+-+|..||++|==| T Consensus 19 ~d~iiClecGk~~k~L 34 (87) T 2jsp_A 19 DDHIVCLECGGSFKSL 34 (87) T ss_dssp SSCEECTBTCCEESBH T ss_pred CCEEEEECCCCCHHHH T ss_conf 9805871278305589 No 201 >2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3 Probab=41.84 E-value=9.9 Score=17.93 Aligned_cols=33 Identities=12% Similarity=0.127 Sum_probs=21.7 Q ss_pred CCCCCCCCCC------EEEECCCC-CCCCCCCCCEECHHH Q ss_conf 8311788887------44214888-722778987153233 Q gi|254780459|r 8 TKRTCPDTGK------RFYDLNKQ-VIVSPYTQNSWPLAY 40 (129) Q Consensus 8 ~KR~C~~Cg~------KFYDlnk~-PiiCP~CG~e~~~~~ 40 (129) .-..||--|+ ..-+..+. -|+||+.|..|.+.. T Consensus 45 ~~n~CpH~ga~~L~~G~~~~~~~~~~i~Cp~Hg~~F~l~t 84 (113) T 2jo6_A 45 ISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSD 84 (113) T ss_dssp EESSCSSSCCSCSTTSEEEEETTEEEEEETTTTEEEETTT T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEECCC T ss_conf 9771899997205676582544678388998987897898 No 202 >2odx_A Cytochrome C oxidase polypeptide IV; all beta-protein, metallo-protein, oxidoreductase; NMR {Saccharomyces cerevisiae} Probab=41.72 E-value=11 Score=17.72 Aligned_cols=28 Identities=7% Similarity=-0.090 Sum_probs=22.1 Q ss_pred CCCCEEEECCCC-CCCCCCCCCEECHHHH Q ss_conf 888744214888-7227789871532331 Q gi|254780459|r 14 DTGKRFYDLNKQ-VIVSPYTQNSWPLAYF 41 (129) Q Consensus 14 ~Cg~KFYDlnk~-PiiCP~CG~e~~~~~~ 41 (129) +.-..++=|.|. |--||.||..|.+..+ T Consensus 43 sh~v~W~~l~~g~~~RC~eCG~~fkL~~v 71 (80) T 2odx_A 43 SHTIMWLKPTVNEVARCWECGSVYKLNPV 71 (80) T ss_dssp CSCCEEECCCTTCEEECSSSCCEEEECCC T ss_pred CCEEEEEEECCCCCCCCCCCCCEEEEEEE T ss_conf 74668999607984235668869999880 No 203 >3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein structure initiative, PSI; 2.07A {Mus musculus} Probab=41.25 E-value=8.7 Score=18.28 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=22.0 Q ss_pred CCCCCCCCEEEE-----CCC-CCCCCCCCCCEECHH Q ss_conf 117888874421-----488-872277898715323 Q gi|254780459|r 10 RTCPDTGKRFYD-----LNK-QVIVSPYTQNSWPLA 39 (129) Q Consensus 10 R~C~~Cg~KFYD-----lnk-~PiiCP~CG~e~~~~ 39 (129) -+||..|+.+.. .+. .-|+||+.|..|.+. T Consensus 55 n~CpHrg~~L~~g~i~~~~~~~~i~CPyHgw~fdl~ 90 (157) T 3d89_A 55 IRCYHSGGPLHLGEIEDFNGQSCIVCPWHKYKITLA 90 (157) T ss_dssp SBCTTTCCBGGGSEEEEETTEEEEECTTTCCEEETT T ss_pred CCCCCCCCCCCCCEEECCCCCCEEEECCCCCEEECC T ss_conf 847999972123505337997999978889899899 No 204 >2f4m_A Peptide N-glycanase; glycoproteins, ubiquitin-dependent protein degradation, nucleotide excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: d.3.1.4 PDB: 2f4o_A* Probab=40.52 E-value=14 Score=17.05 Aligned_cols=45 Identities=9% Similarity=-0.017 Sum_probs=29.3 Q ss_pred HHCCCCCCCCCCCEEEECCC----CC------------CCCCCCCCE--E----CHHHHHCCCCCCC Q ss_conf 22783117888874421488----87------------227789871--5----3233101234434 Q gi|254780459|r 5 ELGTKRTCPDTGKRFYDLNK----QV------------IVSPYTQNS--W----PLAYFEAPTSPEK 49 (129) Q Consensus 5 elG~KR~C~~Cg~KFYDlnk----~P------------iiCP~CG~e--~----~~~~~~~~~~~~~ 49 (129) .|=.|-.|+.||.+---... +| -.|+.||+. | .|..++..|+|+- T Consensus 77 ~Wvn~p~C~~Cg~~~~~~~~~~~Pt~~E~~~ga~rVE~y~C~~C~~~~rfPRyn~p~~ll~tr~GrC 143 (295) T 2f4m_A 77 RWVNNIVCSKCGGETRSRDEALLPNDDELKWGAKNVENHYCDACQLSNRFPRYNNPEKLLETRCGRC 143 (295) T ss_dssp EECSSCCCTTTCCCCEECSSCBCCCSHHHHTTCCCEEEEEETTTTEEEEEECCCCHHHHHHHCEESH T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCCCCCEECCCCCCHHHHHHHCCCCH T ss_conf 7658988986899786268888969689707987699998999998316888799899987367458 No 205 >1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Probab=40.22 E-value=15 Score=16.85 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=20.1 Q ss_pred CCCHHHCCCCCCCC--CCCEEEECCCCCCCCCCCCCEECH Q ss_conf 97522278311788--887442148887227789871532 Q gi|254780459|r 1 MAKPELGTKRTCPD--TGKRFYDLNKQVIVSPYTQNSWPL 38 (129) Q Consensus 1 MaK~elG~KR~C~~--Cg~KFYDlnk~PiiCP~CG~e~~~ 38 (129) |+--++|+. |.- |..+ || -|++|.+|+..|=. T Consensus 8 m~~~d~g~~--Cs~~~C~~~--d~--lp~~C~~C~~~FC~ 41 (75) T 1wys_A 8 MAELDIGQH--CQVQHCRQR--DF--LPFVCDGCSGIFCL 41 (75) T ss_dssp CCCCCCCCC--CSCTTTCCC--SC--CCEECTTTCCEECS T ss_pred CHHCCCCCC--CCCCCCCCC--CC--CCCCCCCCCCHHHH T ss_conf 510236783--684568886--41--56345130870225 No 206 >2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=40.19 E-value=15 Score=16.74 Aligned_cols=29 Identities=24% Similarity=0.216 Sum_probs=19.1 Q ss_pred CCCCCCCCEEEEC---CCC-CC--CCCCCCCEECH Q ss_conf 1178888744214---888-72--27789871532 Q gi|254780459|r 10 RTCPDTGKRFYDL---NKQ-VI--VSPYTQNSWPL 38 (129) Q Consensus 10 R~C~~Cg~KFYDl---nk~-Pi--iCP~CG~e~~~ 38 (129) -+|++|+.-=..| +|. .+ .|=.||+..+. T Consensus 104 VlC~~C~sPdT~l~k~~k~~~~~l~C~aCGa~~~v 138 (157) T 2e9h_A 104 VLCPECENPETDLHVNPKKQTIGNSCKACGYRGML 138 (157) T ss_dssp TSCTTTCCSCCEEEEETTTTEEEEECSSSCCEEEC T ss_pred EECCCCCCCCEEEEEECCCCEEEEEHHHCCCCCCC T ss_conf 99899989864999914787998481126998861 No 207 >2kfq_A FP1; protein, de novo protein; NMR {Synthetic} Probab=39.07 E-value=5.8 Score=19.36 Aligned_cols=10 Identities=10% Similarity=0.225 Sum_probs=6.4 Q ss_pred CCCCCCCEEC Q ss_conf 2778987153 Q gi|254780459|r 28 VSPYTQNSWP 37 (129) Q Consensus 28 iCP~CG~e~~ 37 (129) .||.|+.-|. T Consensus 4 ~C~~C~KrFs 13 (32) T 2kfq_A 4 ACPACPKRFM 13 (32) T ss_dssp SSSSSCTTHH T ss_pred CCCCCCCCCC T ss_conf 6775555325 No 208 >1s1i_Y L35, YP55, 60S ribosomal protein L37-A; 80S ribosome, 60S ribosomal subunit, EEF2, tRNA translocation, sordarin, cryo-EM; 11.70A {Saccharomyces cerevisiae} SCOP: i.1.1.1 Probab=38.81 E-value=14 Score=16.99 Aligned_cols=23 Identities=17% Similarity=0.405 Sum_probs=20.7 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCC Q ss_conf 1178888744214888722778987 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQVIVSPYTQN 34 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~PiiCP~CG~ 34 (129) -.|--||.+=|-+.|. .|-+||. T Consensus 16 tlCrRCG~~syH~qK~--~CasCGy 38 (87) T 1s1i_Y 16 TLCNRCGRRSFHVQKK--TCSSCGY 38 (87) T ss_dssp EECTTSSSSEECSSSS--SCSSSCT T ss_pred CHHHCCCCCCCEECCC--CCCCCCC T ss_conf 8420658401130534--4653689 No 209 >2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=38.69 E-value=13 Score=17.24 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=16.8 Q ss_pred HCCCCCCCCCCCEEEECCCCCCCCCCCCC Q ss_conf 27831178888744214888722778987 Q gi|254780459|r 6 LGTKRTCPDTGKRFYDLNKQVIVSPYTQN 34 (129) Q Consensus 6 lG~KR~C~~Cg~KFYDlnk~PiiCP~CG~ 34 (129) +-.++.|+.|.-.=+.-+..|..||.|+- T Consensus 25 ~~r~~~C~~C~G~G~~~g~~~~~C~~C~G 53 (104) T 2ctt_A 25 VNIMDTCERCNGKGNEPGTKVQHCHYCGG 53 (104) T ss_dssp SSCCEECSSSSSSSSCTTCCCEECSSSSS T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 55234168888878148981741896545 No 210 >2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A Probab=38.68 E-value=6.8 Score=18.94 Aligned_cols=19 Identities=26% Similarity=0.517 Sum_probs=16.0 Q ss_pred HHCCCCCCCCCCCEEEECC Q ss_conf 2278311788887442148 Q gi|254780459|r 5 ELGTKRTCPDTGKRFYDLN 23 (129) Q Consensus 5 elG~KR~C~~Cg~KFYDln 23 (129) .-|+|+.|--|-+||-|.. T Consensus 5 ssgikqhcrfckkkysdvk 23 (37) T 2elu_A 5 SSGIKQHCRFCKKKYSDVK 23 (37) T ss_dssp CCCCCCEETTTTEECSSHH T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 1668999999998878899 No 211 >1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1 Probab=38.12 E-value=8.6 Score=18.30 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=17.4 Q ss_pred CCCCCCCCEEE----ECCCC--CCCCCCCCCEE Q ss_conf 11788887442----14888--72277898715 Q gi|254780459|r 10 RTCPDTGKRFY----DLNKQ--VIVSPYTQNSW 36 (129) Q Consensus 10 R~C~~Cg~KFY----Dlnk~--PiiCP~CG~e~ 36 (129) +-|| ||-+|. +|..- -+.||+|.-.+ T Consensus 31 ypCr-CGd~F~it~~dL~~ge~V~~C~sCSL~I 62 (83) T 1wge_A 31 YPCP-CGDNFAITKEDLENGEDVATCPSCSLII 62 (83) T ss_dssp ECCS-SSSCEEEEHHHHHTTCCEEECTTTCCEE T ss_pred ECCC-CCCEEEECHHHHHCCCCEEECCCCCCEE T ss_conf 5789-8998988799986899198199986389 No 212 >2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=37.77 E-value=9.3 Score=18.10 Aligned_cols=34 Identities=9% Similarity=0.002 Sum_probs=22.6 Q ss_pred CCCCCCCEEEECC------------C--CCCCCCCCCCEECHHHHHCC Q ss_conf 1788887442148------------8--87227789871532331012 Q gi|254780459|r 11 TCPDTGKRFYDLN------------K--QVIVSPYTQNSWPLAYFEAP 44 (129) Q Consensus 11 ~C~~Cg~KFYDln------------k--~PiiCP~CG~e~~~~~~~~~ 44 (129) .|.-||.+|--.+ | ....|+.|+..|.-...+.. T Consensus 9 kC~~C~~~F~~~~~L~~H~~~H~~~~~~~~~~C~~C~~~f~~~~~L~~ 56 (78) T 2d9h_A 9 QCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAA 56 (78) T ss_dssp ECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHH T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEECCCCCCEECCHHHHHH T ss_conf 889997631969999999987137767765463997994079999999 No 213 >2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, polymorphism, metal-binding, phosphoprotein, exchange factor, RAC, zinc, GTPase; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Probab=37.56 E-value=13 Score=17.15 Aligned_cols=29 Identities=7% Similarity=-0.149 Sum_probs=19.7 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCEECH Q ss_conf 11788887442148887227789871532 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQVIVSPYTQNSWPL 38 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~~ 38 (129) ..|..|++.|-=|-+.=-.|-.||..+-- T Consensus 358 ~~C~~C~~~f~~~~~r~hhCr~Cg~~vc~ 386 (406) T 2vrw_B 358 TSCKACQMLLRGTFYQGYRCYRCRAPAHK 386 (406) T ss_dssp CBCTTTCCBCCSSSSCEEEETTTCCEECG T ss_pred CCCCCCCCCCCCCCCCCEECCCCCCEECH T ss_conf 87561878203101267475458596364 No 214 >2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=37.33 E-value=12 Score=17.33 Aligned_cols=33 Identities=6% Similarity=0.053 Sum_probs=20.6 Q ss_pred CCCCCCCCCEEE--ECC-------CCCCCCCCCCCEECHHHH Q ss_conf 311788887442--148-------887227789871532331 Q gi|254780459|r 9 KRTCPDTGKRFY--DLN-------KQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 9 KR~C~~Cg~KFY--Dln-------k~PiiCP~CG~e~~~~~~ 41 (129) ...|+.|++.|- +|. ..++.||+||..|....+ T Consensus 17 ~~~C~~C~~~~~~~~l~~H~~~C~~~~~~C~~C~~~~~r~~l 58 (75) T 2d9k_A 17 LAVCQHCDLELSILKLKEHEDYCGARTELCGNCGRNVLVKDL 58 (75) T ss_dssp CEECSSSCCEECHHHHHHHHHHHHHCEEECSSSCCEEETTGG T ss_pred CEECCCCCCEECCCHHHHHHHHCCCCCEECCCCCEECCHHHH T ss_conf 807899987677211767986379977748986928528999 No 215 >2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C Probab=37.22 E-value=16 Score=16.69 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=20.0 Q ss_pred HHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEE Q ss_conf 222783117888874421488872277898715 Q gi|254780459|r 4 PELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSW 36 (129) Q Consensus 4 ~elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~ 36 (129) ..-|-...|+.|.++|.=+.|. =.|=.||..| T Consensus 4 ~~~~d~~~C~~C~k~F~~~~r~-HhCr~Cg~~v 35 (62) T 2a20_A 4 EQKGDAPTCGICHKTKFADGCG-HNCSYCQTKF 35 (62) T ss_dssp CCSSCCCCCSSSSCSCCCSSCC-EEBTTTCCEE T ss_pred CCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCC T ss_conf 4478897270507864677777-6064363701 No 216 >1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ... Probab=37.10 E-value=15 Score=16.79 Aligned_cols=29 Identities=28% Similarity=0.504 Sum_probs=22.5 Q ss_pred HHHCCCC-----CCCCCCCEEEECCCCCCCCCCCCC Q ss_conf 2227831-----178888744214888722778987 Q gi|254780459|r 4 PELGTKR-----TCPDTGKRFYDLNKQVIVSPYTQN 34 (129) Q Consensus 4 ~elG~KR-----~C~~Cg~KFYDlnk~PiiCP~CG~ 34 (129) +.+|+.+ .|--||.+=|-+.|. .|.+||. T Consensus 7 ~SfGKr~~ktH~~CrRCG~~syH~qK~--~CasCGy 40 (57) T 1vq8_1 7 PSQGKKNTTTHTKCRRCGEKSYHTKKK--VCSSCGF 40 (57) T ss_dssp HHHTTCCCCCEEECTTTCSEEEETTTT--EETTTCT T ss_pred CCCCCCCCCCCCHHCCCCCHHHHHCCC--CCCCCCC T ss_conf 644555787506202758224433236--2331588 No 217 >2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=36.57 E-value=11 Score=17.55 Aligned_cols=15 Identities=13% Similarity=0.297 Sum_probs=6.4 Q ss_pred CCCCCCCCCCCEECH Q ss_conf 887227789871532 Q gi|254780459|r 24 KQVIVSPYTQNSWPL 38 (129) Q Consensus 24 k~PiiCP~CG~e~~~ 38 (129) |.++.|++|+.+|.. T Consensus 8 kR~v~C~~C~~~~~~ 22 (66) T 2eod_A 8 KRTQPCTYCTKEFVF 22 (66) T ss_dssp CCEEECSSSCCEEEH T ss_pred CCCCCCCCCCCCCCH T ss_conf 826659999881158 No 218 >2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=36.55 E-value=10 Score=17.86 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=14.1 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCEE Q ss_conf 117888874421488872277898715 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQVIVSPYTQNSW 36 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~ 36 (129) ++|--||. ..--.||.|+.-| T Consensus 13 ~~C~vC~~------~~kY~Cp~C~~~y 33 (56) T 2yqq_A 13 VVCVICLE------KPKYRCPACRVPY 33 (56) T ss_dssp CCCTTTCS------CCSEECTTTCCEE T ss_pred CCCCCCCC------CCCCCCCCCCCCC T ss_conf 58146949------9864588989882 No 219 >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, signaling protein; 2.90A {Chlorobaculum tepidum} Probab=36.41 E-value=6.7 Score=18.97 Aligned_cols=35 Identities=9% Similarity=0.098 Sum_probs=21.9 Q ss_pred CCCCCCCCCCEEEEC---------CCCCCCCCCCCCEECHHHHH Q ss_conf 831178888744214---------88872277898715323310 Q gi|254780459|r 8 TKRTCPDTGKRFYDL---------NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 8 ~KR~C~~Cg~KFYDl---------nk~PiiCP~CG~e~~~~~~~ 42 (129) .+.-||.|..++|.. ++.-++|++|...|....++ T Consensus 479 ~~vpCp~~~~~~~~~~~l~~~~~~g~~~~~c~~~~~~~~v~~ll 522 (535) T 3dpu_A 479 EFIPLPGHPDELVEYKELLGLEKMGRDRYVSGKLEKVFSVSKML 522 (535) T ss_dssp EEEEETTEEEEEEEHHHHHHHHHTTCCEEEETTTTEEEEHHHHH T ss_pred EEEECCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCEEEHHHHH T ss_conf 89879898665767899999997799765678778567799963 No 220 >2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Probab=36.39 E-value=13 Score=17.23 Aligned_cols=30 Identities=7% Similarity=-0.052 Sum_probs=20.7 Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCEECHHHHHC Q ss_conf 31178888744214888722778987153233101 Q gi|254780459|r 9 KRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEA 43 (129) Q Consensus 9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~ 43 (129) .-.||=|+.-|. +|++-| ||..|.-..+.+ T Consensus 14 ~~~CpI~~~lm~----dPV~~~-cGhtf~r~~I~~ 43 (85) T 2kr4_A 14 EFRDPLMDTLMT----DPVRLP-SGTVMDRSIILR 43 (85) T ss_dssp TTBCTTTCSBCS----SEEECT-TSCEEEHHHHHH T ss_pred CCCCCCCCCCCC----CCEECC-CCCEECHHHHHH T ss_conf 489848588225----887869-989772999999 No 221 >3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Probab=36.16 E-value=14 Score=16.99 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=18.4 Q ss_pred CCCCCCC------EEEECCCCCCCCCCCCCEE Q ss_conf 1788887------4421488872277898715 Q gi|254780459|r 11 TCPDTGK------RFYDLNKQVIVSPYTQNSW 36 (129) Q Consensus 11 ~C~~Cg~------KFYDlnk~PiiCP~CG~e~ 36 (129) .|..|++ +|-+ ++. -+|+-||+.- T Consensus 87 RC~~C~AYiNp~~~~~~-~~~-w~C~~C~~~N 116 (751) T 3eh1_A 87 RCRSCRTYINPFVSFID-QRR-WKCNLCYRVN 116 (751) T ss_dssp BCTTTCCBCCTTCEESS-SSE-EECTTTCCEE T ss_pred CCCCCCCEECCCEEECC-CCE-EECCCCCCCC T ss_conf 27987388887378847-998-9824799868 No 222 >2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus} Probab=36.08 E-value=10 Score=17.83 Aligned_cols=14 Identities=7% Similarity=0.109 Sum_probs=8.6 Q ss_pred CCCCCCCCCCEECH Q ss_conf 87227789871532 Q gi|254780459|r 25 QVIVSPYTQNSWPL 38 (129) Q Consensus 25 ~PiiCP~CG~e~~~ 38 (129) .|--|-.||.-|.+ T Consensus 2 kpy~c~~c~krfsl 15 (28) T 2kvf_A 2 RPYSCSVCGKRFSL 15 (28) T ss_dssp CSEECSSSCCEESC T ss_pred CCCCCCCCCCCCCH T ss_conf 96301643330011 No 223 >1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A 1rwd_A 1qcv_A 2pve_A 2pvx_A ... Probab=36.01 E-value=16 Score=16.61 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=10.4 Q ss_pred CCEEEECCCCCCCCCCCCCE Q ss_conf 87442148887227789871 Q gi|254780459|r 16 GKRFYDLNKQVIVSPYTQNS 35 (129) Q Consensus 16 g~KFYDlnk~PiiCP~CG~e 35 (129) ||.|-+|- .-=+||-||+. T Consensus 26 GT~F~~LP-~dw~CP~C~a~ 44 (52) T 1yk4_A 26 GTKFEDLP-DDWVCPLCGAP 44 (52) T ss_dssp TCCGGGSC-TTCBCTTTCCB T ss_pred CCCHHHCC-CCCCCCCCCCC T ss_conf 99978889-98879499883 No 224 >1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42 Probab=35.70 E-value=17 Score=16.46 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=21.5 Q ss_pred CCCCCCCCCEEEECCCCC----CCCCCCCCEECH Q ss_conf 311788887442148887----227789871532 Q gi|254780459|r 9 KRTCPDTGKRFYDLNKQV----IVSPYTQNSWPL 38 (129) Q Consensus 9 KR~C~~Cg~KFYDlnk~P----iiCP~CG~e~~~ 38 (129) .|+-..-+..||.++..+ ++|-.||..++. T Consensus 70 ~~~~~~~~~~~~~~~~~~hh~HliC~~Cg~i~~~ 103 (136) T 1mzb_A 70 VRHNFDGGHAVFELADSGHHDHMVCVDTGEVIEF 103 (136) T ss_dssp EEECSSSSSCEEEESSSCCCEEEEETTTCCEEEE T ss_pred EEEEECCCEEEEECCCCCCCCEEEECCCCCEEEE T ss_conf 9999389818996589998888999999999984 No 225 >2pw4_A Uncharacterized protein DUF1470; YP_510353.1, protein of unknown function DUF1470, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Jannaschia SP} SCOP: d.380.1.1 PDB: 3h0n_A* Probab=35.68 E-value=14 Score=16.98 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=22.9 Q ss_pred CHHHCCCCCC--CCCCCEEEECCCCC---CCCCCCCCE Q ss_conf 5222783117--88887442148887---227789871 Q gi|254780459|r 3 KPELGTKRTC--PDTGKRFYDLNKQV---IVSPYTQNS 35 (129) Q Consensus 3 K~elG~KR~C--~~Cg~KFYDlnk~P---iiCP~CG~e 35 (129) ...|+.=|+| |.|+.-|||.-|.. ==++.||.- T Consensus 139 ~~~~~Rlr~C~a~~C~~~F~D~Srn~~RRwCS~~CGNR 176 (188) T 2pw4_A 139 HQNVRRFGICNAHRCDRVYFDTSRNGTRQYCSLACQNR 176 (188) T ss_dssp TTCGGGEEECCSTTCCCEEECCSSSCCCCCSSHHHHHH T ss_pred CCCHHHHCCCCCCCCCEEEEECCCCCCCCCCCCHHHCH T ss_conf 76433305179999886877489999987558201389 No 226 >2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling protein/apoptosis complex; 1.80A {Homo sapiens} PDB: 2pop_B Probab=35.38 E-value=14 Score=17.08 Aligned_cols=19 Identities=5% Similarity=-0.053 Sum_probs=13.8 Q ss_pred EEECC-CCCCCCCCCCCEEC Q ss_conf 42148-88722778987153 Q gi|254780459|r 19 FYDLN-KQVIVSPYTQNSWP 37 (129) Q Consensus 19 FYDln-k~PiiCP~CG~e~~ 37 (129) ||=.+ ++.+.|.+||..+. T Consensus 47 Fyytg~~D~V~Cf~C~~~l~ 66 (94) T 2poi_A 47 FLYTGEGDTVRCFSCHAAVD 66 (94) T ss_dssp EEECSSTTCEEETTTCCEEC T ss_pred CEECCCCCEEEECCCCCEEC T ss_conf 78879998789486688937 No 227 >2qgp_A HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 2.60A {Geobacter metallireducens gs-15} Probab=35.26 E-value=11 Score=17.62 Aligned_cols=12 Identities=17% Similarity=0.457 Sum_probs=7.3 Q ss_pred CCCCCCCEECHH Q ss_conf 277898715323 Q gi|254780459|r 28 VSPYTQNSWPLA 39 (129) Q Consensus 28 iCP~CG~e~~~~ 39 (129) +|++||..|... T Consensus 37 ~C~yCg~~~~~~ 48 (112) T 2qgp_A 37 ICHYCGEIFPPE 48 (112) T ss_dssp BCTTTCCBCCGG T ss_pred CCCCCCCCCCCC T ss_conf 809991999899 No 228 >1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA- directed RNA polymerase, primosome, late protein; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2 Probab=35.20 E-value=21 Score=15.87 Aligned_cols=27 Identities=7% Similarity=0.066 Sum_probs=17.9 Q ss_pred CCCCCCCC----EEEECCCCCCCCCCCCCEECH Q ss_conf 11788887----442148887227789871532 Q gi|254780459|r 10 RTCPDTGK----RFYDLNKQVIVSPYTQNSWPL 38 (129) Q Consensus 10 R~C~~Cg~----KFYDlnk~PiiCP~CG~e~~~ 38 (129) --||.||. ++|+=+ -.-|=.||+-+.. T Consensus 15 ~pCP~Cg~~d~~~~~~dg--~~~C~~Cg~~~~~ 45 (255) T 1nui_A 15 IPCDNCGSSDGNSLFSDG--HTFCYVCEKWTAG 45 (255) T ss_dssp ECCSSSCCSSCEEEETTS--CEEETTTCCEEC- T ss_pred CCCCCCCCCCCCEEEECC--CEEECCCCCCCCC T ss_conf 899989899998795299--8897679984478 No 229 >2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Probab=35.16 E-value=11 Score=17.68 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=19.9 Q ss_pred CCCCCCEEEEC-----------CCCCCCCCC--CCCEECHHHHH Q ss_conf 78888744214-----------888722778--98715323310 Q gi|254780459|r 12 CPDTGKRFYDL-----------NKQVIVSPY--TQNSWPLAYFE 42 (129) Q Consensus 12 C~~Cg~KFYDl-----------nk~PiiCP~--CG~e~~~~~~~ 42 (129) |+.||..|.-- +..|-.||. ||..|.-...+ T Consensus 6 ~~~C~k~F~~~~~L~~H~~~H~~~kpy~C~~~~C~k~F~~~~~L 49 (85) T 2j7j_A 6 FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRL 49 (85) T ss_dssp STTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHH T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCHHHH T ss_conf 89998831989999999987389998416868767343766788 No 230 >2b4y_A NAD-dependent deacetylase sirtuin-5; histone deacetylase, structural genomics, structural genomics consortium, SGC, hydrolase; HET: APR EPE; 1.90A {Homo sapiens} SCOP: c.31.1.5 PDB: 2nyr_A* Probab=35.10 E-value=15 Score=16.91 Aligned_cols=15 Identities=20% Similarity=0.341 Sum_probs=11.1 Q ss_pred CCCCCCCCCEEEECC Q ss_conf 311788887442148 Q gi|254780459|r 9 KRTCPDTGKRFYDLN 23 (129) Q Consensus 9 KR~C~~Cg~KFYDln 23 (129) .-.|+.|+..|+..+ T Consensus 132 ~~~C~~C~~~~~~~~ 146 (271) T 2b4y_A 132 KTRCTSCGVVAENYK 146 (271) T ss_dssp EEEETTTCCEEECCC T ss_pred EEEECCCCCCHHHHH T ss_conf 789889998211222 No 231 >1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1 Probab=35.08 E-value=17 Score=16.47 Aligned_cols=27 Identities=19% Similarity=0.061 Sum_probs=19.2 Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCCEEC Q ss_conf 7831178888744214888722778987153 Q gi|254780459|r 7 GTKRTCPDTGKRFYDLNKQVIVSPYTQNSWP 37 (129) Q Consensus 7 G~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~ 37 (129) -.|..|..|++|-- | ..+.| +||..|= T Consensus 23 ~~~~RC~~C~kKl~-l--~~~~C-rCg~~FC 49 (74) T 1wfl_A 23 PKKNRCFMCRKKVG-L--TGFDC-RCGNLFC 49 (74) T ss_dssp SCTTBCSSSCCBCG-G--GCEEC-TTSCEEC T ss_pred CCCCCCHHCCCCCC-C--CCEEC-CCCCHHH T ss_conf 87881510288857-7--77361-7989132 No 232 >1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxidoreductase; 1.60A {Burkholderia xenovorans LB400} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B* Probab=35.05 E-value=14 Score=16.93 Aligned_cols=30 Identities=13% Similarity=0.232 Sum_probs=20.1 Q ss_pred CCCCCCCEEEE---CCCCCCCCCCCCCEECHHH Q ss_conf 17888874421---4888722778987153233 Q gi|254780459|r 11 TCPDTGKRFYD---LNKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 11 ~C~~Cg~KFYD---lnk~PiiCP~CG~e~~~~~ 40 (129) .||..|...-. ....-|+||..|..|.+.. T Consensus 45 ~CpH~g~~L~~g~~~~~~~i~Cp~H~~~f~l~t 77 (112) T 1fqt_A 45 RCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRT 77 (112) T ss_dssp BCTTSSCBSSTTCCEETTEEECTTTCCEEETTT T ss_pred CCCCCCCEEECEEEECCCEEEECCCCCEEECCC T ss_conf 488778683000273698558088699998997 No 233 >1vzi_A Desulfoferrodoxin; ferrocyanide, microspectrophotometry, redox states, photoreduction, dinuclear iron cluster, oxidoreductase; 1.15A {Desulfovibrio baarsii} SCOP: b.1.13.1 g.41.5.2 PDB: 1vzh_A* 1vzg_A 2ji1_A 2ji2_A 2ji3_A 1dfx_A Probab=34.81 E-value=14 Score=16.98 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=14.1 Q ss_pred CCCCCCCEEEEC--CCCCCCCCCCCCEEC Q ss_conf 178888744214--888722778987153 Q gi|254780459|r 11 TCPDTGKRFYDL--NKQVIVSPYTQNSWP 37 (129) Q Consensus 11 ~C~~Cg~KFYDl--nk~PiiCP~CG~e~~ 37 (129) +|+.||.-+.=+ +.-++.| ||.... T Consensus 9 ~C~~CGniv~~~~~~~~~~~C--Cg~~m~ 35 (126) T 1vzi_A 9 KCEVCGNIVEVLNGGIGELVC--CNQDMK 35 (126) T ss_dssp ECTTTCCEEEEEECCSSCEEE--TTEECE T ss_pred ECCCCCCEEEEECCCCCCEEE--ECCCHH T ss_conf 879999799995289715575--098610 No 234 >1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1 Probab=34.49 E-value=23 Score=15.70 Aligned_cols=30 Identities=17% Similarity=0.387 Sum_probs=20.1 Q ss_pred HCCCCCCCC--CCCEEEECCCCCCCCCCCCCEECHH Q ss_conf 278311788--8874421488872277898715323 Q gi|254780459|r 6 LGTKRTCPD--TGKRFYDLNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 6 lG~KR~C~~--Cg~KFYDlnk~PiiCP~CG~e~~~~ 39 (129) -.++-.|.. |.. .+| -|++|++|+.-|=.. T Consensus 22 ~~~~~~Cs~~~C~~--~~~--lp~~C~~C~~~FC~~ 53 (86) T 1wfe_A 22 EHKSYSCSFKGCTD--VEL--VAVICPYCEKNFCLR 53 (86) T ss_dssp CSCCEECCSTTCCC--EES--SCEECTTTCCEECGG T ss_pred CCCCCCCCCCCCCC--CCC--CEEECCCCCCCHHHC T ss_conf 86678678778888--753--123651008701053 No 235 >3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Probab=33.98 E-value=15 Score=16.77 Aligned_cols=30 Identities=7% Similarity=-0.137 Sum_probs=21.1 Q ss_pred CCCCCCCCC------EEEECCCCCCCCCCCCCEECH Q ss_conf 311788887------442148887227789871532 Q gi|254780459|r 9 KRTCPDTGK------RFYDLNKQVIVSPYTQNSWPL 38 (129) Q Consensus 9 KR~C~~Cg~------KFYDlnk~PiiCP~CG~e~~~ 38 (129) ..+||+|+. ||..=+|.-=+|=+||..++. T Consensus 135 ~Lvdp~~~k~tRVg~k~~edGkKVRv~kktG~~Id~ 170 (191) T 3bbo_W 135 MLILKEQEVADRVGHKILEDVRKVRYLIKTGEIVDT 170 (191) T ss_dssp EECSSSSCCCCCCCCCSSSCCCCCSSSCCSSSCCCC T ss_pred EEECCCCCCCEEEEEEECCCCCEEEEEECCCCCCCC T ss_conf 787688998438899997799599999258982488 No 236 >2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, metal transport, zinc, iron, repressor, cytoplasm, DNA-binding; 2.60A {Vibrio cholerae} Probab=33.90 E-value=13 Score=17.25 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=20.8 Q ss_pred CCCCCCCCEEEECCCCC----CCCCCCCCEECH Q ss_conf 11788887442148887----227789871532 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQV----IVSPYTQNSWPL 38 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~P----iiCP~CG~e~~~ 38 (129) |+=..-|..||.++..+ ++|-.||..+.. T Consensus 70 ~i~~~~~~~~~~~~~~~~h~hliC~~Cg~i~~~ 102 (150) T 2w57_A 70 RHHFEGGKSVFELSTQHHHDHLVCLDCGEVIEF 102 (150) T ss_dssp EEECGGGCEEEEECCSSCCEEEEETTTCCEEEE T ss_pred EEEECCCEEEEECCCCCCCCEEEECCCCCEEEE T ss_conf 997179727996589984267999999999983 No 237 >2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=33.73 E-value=15 Score=16.87 Aligned_cols=15 Identities=13% Similarity=0.319 Sum_probs=10.8 Q ss_pred CCCCCCCCCCCCEEC Q ss_conf 888722778987153 Q gi|254780459|r 23 NKQVIVSPYTQNSWP 37 (129) Q Consensus 23 nk~PiiCP~CG~e~~ 37 (129) ...-.-||+|+.-|- T Consensus 6 ~~RA~KCPyCd~~F~ 20 (37) T 2elp_A 6 SGRAMKCPYCDFYFM 20 (37) T ss_dssp CCCCEECSSSSCEEC T ss_pred CCCCCCCCCHHHHHH T ss_conf 686314870168885 No 238 >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Probab=33.10 E-value=8.6 Score=18.29 Aligned_cols=30 Identities=23% Similarity=0.280 Sum_probs=21.3 Q ss_pred CCCCCCCCC-EEEECCCCCCCC---CCCCCEECH Q ss_conf 311788887-442148887227---789871532 Q gi|254780459|r 9 KRTCPDTGK-RFYDLNKQVIVS---PYTQNSWPL 38 (129) Q Consensus 9 KR~C~~Cg~-KFYDlnk~PiiC---P~CG~e~~~ 38 (129) -|-|..|.. -+.-++..|+.| |.+|.|+.. T Consensus 345 i~~Ci~cn~c~~~~~~~~~~~C~vNp~~g~e~~~ 378 (690) T 3k30_A 345 IRECIGCNICVSGDLTMSPIRCTQNPSMGEEWRR 378 (690) T ss_dssp CCCCCCCCHHHHHHHTTSCCCCSSCTTTTTTTTT T ss_pred CCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC T ss_conf 5231102320204434999818448110245524 No 239 >1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans R1} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C Probab=33.02 E-value=22 Score=15.79 Aligned_cols=28 Identities=14% Similarity=0.144 Sum_probs=21.9 Q ss_pred CCCCCCCC---EEEECCCCCCCCCCCCCEEC Q ss_conf 11788887---44214888722778987153 Q gi|254780459|r 10 RTCPDTGK---RFYDLNKQVIVSPYTQNSWP 37 (129) Q Consensus 10 R~C~~Cg~---KFYDlnk~PiiCP~CG~e~~ 37 (129) -.|..||. .||++..-=++|+.|+.... T Consensus 151 ~~C~~cg~~~~~~f~~~~Gg~vC~~c~~~~~ 181 (244) T 1u5k_A 151 ARCARCGAPDPEHPDPLGGQLLCSKCAALPP 181 (244) T ss_dssp SBCTTTCCBSCCEECTTTSSEECTTTCSSCC T ss_pred CCHHCCCCCCCCCEEHHCCEEECCCCCCCCC T ss_conf 0030389968750546209777767767898 No 240 >2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=32.98 E-value=14 Score=17.10 Aligned_cols=26 Identities=8% Similarity=0.116 Sum_probs=16.8 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCEECHHHH Q ss_conf 1788887442148887227789871532331 Q gi|254780459|r 11 TCPDTGKRFYDLNKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~ 41 (129) .|+=|.-.| ++|++.| ||+.|--.=+ T Consensus 17 ~C~IC~~~~----~~~v~~~-CgH~fC~~Ci 42 (71) T 2d8t_A 17 ECAICLQTC----VHPVSLP-CKHVFCYLCV 42 (71) T ss_dssp BCSSSSSBC----SSEEEET-TTEEEEHHHH T ss_pred CCEEECCCC----CCCEEEC-CCCCCCHHHH T ss_conf 290339214----8828948-9996069999 No 241 >1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A Probab=32.63 E-value=8.5 Score=18.34 Aligned_cols=26 Identities=35% Similarity=0.595 Sum_probs=17.5 Q ss_pred CCCCCCCCEEE----ECCC--CCCCCCCCCCEE Q ss_conf 11788887442----1488--872277898715 Q gi|254780459|r 10 RTCPDTGKRFY----DLNK--QVIVSPYTQNSW 36 (129) Q Consensus 10 R~C~~Cg~KFY----Dlnk--~PiiCP~CG~e~ 36 (129) +-|| ||-+|- +|.. .-+.||+|.--+ T Consensus 24 ypCr-CGd~F~ite~dLe~ge~vv~C~sCSL~I 55 (83) T 1yop_A 24 YPCP-CGDRFQIYLDDMFEGEKVAVCPSCSLMI 55 (83) T ss_dssp EEET-TTEEEEEEHHHHHTTCCEEECSSSCCEE T ss_pred ECCC-CCCEEEECHHHHHCCCEEEECCCCCCEE T ss_conf 6268-8996899999982899699799996189 No 242 >1ejp_A Syndecan-4; symmetric-parallel-interwinded dimer, signaling protein; NMR {Synthetic} SCOP: j.80.1.1 PDB: 1ejq_A Probab=32.23 E-value=14 Score=17.03 Aligned_cols=17 Identities=35% Similarity=0.419 Sum_probs=11.1 Q ss_pred EEECCCCCCCCCCCCCE Q ss_conf 42148887227789871 Q gi|254780459|r 19 FYDLNKQVIVSPYTQNS 35 (129) Q Consensus 19 FYDlnk~PiiCP~CG~e 35 (129) -|||+|.||---.--++ T Consensus 9 sydlgkkpiykkapt~e 25 (28) T 1ejp_A 9 SYDLGKKPIYKKAPTNE 25 (28) T ss_dssp CCCCCSCCCCCCCCCCC T ss_pred CCCCCCCCCCCCCCCCC T ss_conf 42246674212376520 No 243 >1v54_F VI, cytochrome C oxidase polypeptide VB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: g.41.5.3 PDB: 1oco_F* 1occ_F* 1ocz_F* 1ocr_F* 1v55_F* 2dyr_F* 2dys_F* 2eij_F* 2eik_F* 2eil_F* 2eim_F* 2ein_F* 2occ_F* 2zxw_F* 3abk_F* 3abl_F* 3abm_F* 3ag1_F* 3ag2_F* 3ag3_F* ... Probab=32.00 E-value=22 Score=15.80 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=17.3 Q ss_pred CCEEEECCCC-CCCCCCCCCEECH Q ss_conf 8744214888-7227789871532 Q gi|254780459|r 16 GKRFYDLNKQ-VIVSPYTQNSWPL 38 (129) Q Consensus 16 g~KFYDlnk~-PiiCP~CG~e~~~ 38 (129) -..++=|.|. |--||.||..|.+ T Consensus 68 ~v~W~~l~~g~p~RC~eCG~~fkL 91 (98) T 1v54_F 68 TVIWFWLHKGEAQRCPSCGTHYKL 91 (98) T ss_dssp CCEEEEEESSSCEECTTTCCEEEE T ss_pred EEEEEEEECCCCCCCCCCCCEEEE T ss_conf 348899867996345877858998 No 244 >1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1 Probab=31.97 E-value=13 Score=17.13 Aligned_cols=31 Identities=16% Similarity=0.071 Sum_probs=23.2 Q ss_pred HHCCCCCCCCCCCEEEECCCCCCCCCCCCCE Q ss_conf 2278311788887442148887227789871 Q gi|254780459|r 5 ELGTKRTCPDTGKRFYDLNKQVIVSPYTQNS 35 (129) Q Consensus 5 elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e 35 (129) .+=.++.|+.|.-.=+--+..+.+||.|+-. T Consensus 7 ~i~~~~~C~~C~G~G~~~g~~~~~C~~C~G~ 37 (79) T 1exk_A 7 RIPTLEECDVCHGSGAKPGTQPQTCPTCHGS 37 (79) T ss_dssp CCCCEEECGGGTTTSBCSSSCCEECTTTTTS T ss_pred ECCCCCCCCCCCCEEECCCCCCCCCCCCCCE T ss_conf 7635578889977418899988289887881 No 245 >2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Probab=31.82 E-value=15 Score=16.84 Aligned_cols=19 Identities=0% Similarity=-0.071 Sum_probs=14.2 Q ss_pred CCCCCCCCCCCCEECHHHH Q ss_conf 8887227789871532331 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~ 41 (129) +..|-.|+.||..|.-... T Consensus 7 GeKpy~C~~CgK~F~~~s~ 25 (42) T 2yte_A 7 GEKPYSCAECKETFSDNNR 25 (42) T ss_dssp SCCSCBCTTTCCBCSSHHH T ss_pred CCCCEECCCCCCEECCHHH T ss_conf 9889628998895286468 No 246 >1nnq_A Rubrerythrin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.35A {Pyrococcus furiosus} SCOP: a.25.1.1 g.41.5.1 PDB: 2hr5_A Probab=31.62 E-value=15 Score=16.87 Aligned_cols=10 Identities=10% Similarity=0.149 Sum_probs=7.6 Q ss_pred CCCCCCCCEE Q ss_conf 2277898715 Q gi|254780459|r 27 IVSPYTQNSW 36 (129) Q Consensus 27 iiCP~CG~e~ 36 (129) -+||.||..+ T Consensus 140 ~vC~~CG~i~ 149 (171) T 1nnq_A 140 YICPICGYTA 149 (171) T ss_dssp EECTTTCCEE T ss_pred EECCCCCCCC T ss_conf 5899893938 No 247 >1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Probab=31.42 E-value=15 Score=16.77 Aligned_cols=32 Identities=16% Similarity=0.218 Sum_probs=22.4 Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCEECHHHHHCC Q ss_conf 8311788887442148887227789871532331012 Q gi|254780459|r 8 TKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEAP 44 (129) Q Consensus 8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~~ 44 (129) .--+||=|+ ++=++|++.| ||..|.-.-+.+- T Consensus 7 ~~f~CpIc~----~~m~dPV~~~-cGhtfc~~ci~~~ 38 (78) T 1t1h_A 7 EYFRCPISL----ELMKDPVIVS-TGQTYERSSIQKW 38 (78) T ss_dssp SSSSCTTTS----CCCSSEEEET-TTEEEEHHHHHHH T ss_pred CCCCCCCCC----CHHHCCEECC-CCCEEEHHHHHHH T ss_conf 747991739----2633988837-9986609999999 No 248 >2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens} Probab=31.38 E-value=23 Score=15.72 Aligned_cols=29 Identities=14% Similarity=0.049 Sum_probs=18.9 Q ss_pred CCCCCCCC---EEEECCCCCC---CCCCCCCEECH Q ss_conf 11788887---4421488872---27789871532 Q gi|254780459|r 10 RTCPDTGK---RFYDLNKQVI---VSPYTQNSWPL 38 (129) Q Consensus 10 R~C~~Cg~---KFYDlnk~Pi---iCP~CG~e~~~ 38 (129) -+|+.|+. +++=-+|.-+ .|=.||+.-+. T Consensus 97 VlC~~C~sPeT~l~k~~k~~~~~l~C~aCGa~~~v 131 (170) T 2g2k_A 97 VLCPECENPETDLHVNPKKQTIGNSCKACGYRGML 131 (170) T ss_dssp HSCTTTSSSCEEEEEETTTTEEEEEETTTCCCCCS T ss_pred EECCCCCCCCEEEEEECCCCEEECCCCCCCCCCCC T ss_conf 89899999872899905887886651106898864 No 249 >1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A Probab=31.33 E-value=22 Score=15.83 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=17.3 Q ss_pred CCCCCCCCCCEE-----------------EECCCCCCCCCCCCCE Q ss_conf 831178888744-----------------2148887227789871 Q gi|254780459|r 8 TKRTCPDTGKRF-----------------YDLNKQVIVSPYTQNS 35 (129) Q Consensus 8 ~KR~C~~Cg~KF-----------------YDlnk~PiiCP~CG~e 35 (129) .|.+|..||--| -||- .-=+||-||+. T Consensus 6 ~ky~C~~CgyiYDp~~Gd~~~gIppGT~F~dLP-~dw~CP~C~a~ 49 (70) T 1dx8_A 6 GKYECEACGYIYEPEKGDKFAGIPPGTPFVDLS-DSFMCPACRSP 49 (70) T ss_dssp SCEEETTTCCEECTTTCCTTTTCCSSCCGGGSC-TTCBCTTTCCB T ss_pred CCEEECCCCEEECCCCCCCCCCCCCCCCHHHCC-CCCCCCCCCCC T ss_conf 847819999087866678466879889967888-98779199985 No 250 >2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Probab=31.27 E-value=24 Score=15.59 Aligned_cols=35 Identities=6% Similarity=0.246 Sum_probs=25.1 Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCCEECHHHH Q ss_conf 78311788887442148887227789871532331 Q gi|254780459|r 7 GTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 7 G~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~ 41 (129) |-..+|.-|+.....=...=|.|-+|+.-|-..=+ T Consensus 4 g~~~vC~vC~~~~~~~~~~lv~Cd~C~~~~H~~C~ 38 (66) T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCH 38 (66) T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTS T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCHHCHHHC T ss_conf 98280638898988999818787999870163004 No 251 >2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae} Probab=31.03 E-value=18 Score=16.40 Aligned_cols=31 Identities=16% Similarity=0.333 Sum_probs=22.5 Q ss_pred CCCCCCCCCEE--EECCCCCCCCCCCCCEECHH Q ss_conf 31178888744--21488872277898715323 Q gi|254780459|r 9 KRTCPDTGKRF--YDLNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 9 KR~C~~Cg~KF--YDlnk~PiiCP~CG~e~~~~ 39 (129) -.+||.-|... ..+...-|+||+.|..|.+. T Consensus 42 ~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~F~~~ 74 (108) T 2i7f_A 42 DNLCTHGNAMLTDGYQDGTIIECPFHGGSFDIA 74 (108) T ss_dssp ESBCSSSSCBGGGSEEETTEEECSSTTCEEETT T ss_pred EEECCCCCCEEECCCCCCCEEEECCCCCEEECC T ss_conf 765887785840476888999956988399999 No 252 >3jyw_Y 60S ribosomal protein L37(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} Probab=30.90 E-value=22 Score=15.78 Aligned_cols=22 Identities=18% Similarity=0.427 Sum_probs=19.7 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCC Q ss_conf 178888744214888722778987 Q gi|254780459|r 11 TCPDTGKRFYDLNKQVIVSPYTQN 34 (129) Q Consensus 11 ~C~~Cg~KFYDlnk~PiiCP~CG~ 34 (129) .|--||.+=|-+.|. +|-+||. T Consensus 17 ~CrrCG~~syH~qK~--~CasCGy 38 (52) T 3jyw_Y 17 LCNRCGRRSFHVQKK--TCSSCGY 38 (52) T ss_dssp CCSSSCCCCEETTTC--CCSSSCS T ss_pred HHCCCCCHHCEECCC--CCCCCCC T ss_conf 200748322031446--0232689 No 253 >2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=30.26 E-value=21 Score=15.87 Aligned_cols=27 Identities=11% Similarity=0.138 Sum_probs=18.2 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCEECHHHH Q ss_conf 11788887442148887227789871532331 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~ 41 (129) -.|+=|--.| +.|++.| ||+.|=..=+ T Consensus 16 ~~C~IC~~~~----~~p~~~~-C~H~fC~~Ci 42 (81) T 2csy_A 16 FRCFICRQAF----QNPVVTK-CRHYFCESCA 42 (81) T ss_dssp SBCSSSCSBC----CSEEECT-TSCEEEHHHH T ss_pred CCCCCCCCCC----CCCEECC-CCCCHHHHHH T ss_conf 9997687320----8937847-9980249999 No 254 >2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1 Probab=30.11 E-value=12 Score=17.32 Aligned_cols=29 Identities=10% Similarity=0.251 Sum_probs=17.1 Q ss_pred HH-CCCCCCCCCCCEEEECCCCCCCCCCCCCEEC Q ss_conf 22-7831178888744214888722778987153 Q gi|254780459|r 5 EL-GTKRTCPDTGKRFYDLNKQVIVSPYTQNSWP 37 (129) Q Consensus 5 el-G~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~ 37 (129) +| +-...|..|..-| +.-+.||-|+.+.. T Consensus 43 ~~~~g~~hC~~C~~~f----~~~a~CPdC~~~Lq 72 (101) T 2jne_A 43 DQDNGHARCRSCGEFI----EMKALCPDCHQPLQ 72 (101) T ss_dssp EEETTEEEETTTCCEE----EEEEECTTTCSBCE T ss_pred EECCCCEECHHHHHHH----HHEECCCCCCCHHH T ss_conf 2479979967776556----76156974020999 No 255 >1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 Probab=29.88 E-value=13 Score=17.15 Aligned_cols=11 Identities=9% Similarity=0.123 Sum_probs=6.7 Q ss_pred CCCCCCCEECH Q ss_conf 27789871532 Q gi|254780459|r 28 VSPYTQNSWPL 38 (129) Q Consensus 28 iCP~CG~e~~~ 38 (129) .||.|+.-|.- T Consensus 4 ~C~~C~k~FsR 14 (33) T 1rim_A 4 ACPECPKRFMR 14 (33) T ss_dssp CCSSSCCCCSS T ss_pred CCCCCCCCCCH T ss_conf 78777773143 No 256 >1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1 Probab=29.71 E-value=27 Score=15.22 Aligned_cols=27 Identities=11% Similarity=0.087 Sum_probs=20.1 Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCCEEC Q ss_conf 7831178888744214888722778987153 Q gi|254780459|r 7 GTKRTCPDTGKRFYDLNKQVIVSPYTQNSWP 37 (129) Q Consensus 7 G~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~ 37 (129) -+|..|..|++|.- =.++.|- ||..|= T Consensus 13 ~k~~RC~~C~KKl~---l~~~~Cr-Cg~~FC 39 (64) T 1wfh_A 13 QRPNRCTVCRKRVG---LTGFMCR-CGTTFC 39 (64) T ss_dssp SSCCCCTTTCCCCC---TTCEECS-SSCEEC T ss_pred CCCCCCHHHCCCCC---CEEEECC-CCCCHH T ss_conf 88981820097847---5605737-989344 No 257 >1hxr_A Guanine nucleotide exchange factor MSS4; RAB GTPase, membrane trafficking, Zn binding site, metal binding protein; 1.65A {Rattus norvegicus} SCOP: b.88.1.1 PDB: 1fwq_A 2fu5_A Probab=29.69 E-value=15 Score=16.74 Aligned_cols=14 Identities=7% Similarity=0.185 Sum_probs=11.2 Q ss_pred CCCCCCCCCCCCEE Q ss_conf 88872277898715 Q gi|254780459|r 23 NKQVIVSPYTQNSW 36 (129) Q Consensus 23 nk~PiiCP~CG~e~ 36 (129) |++-|+||.||..+ T Consensus 9 N~~~v~C~~C~S~I 22 (115) T 1hxr_A 9 NRKAVLCQRCGSRV 22 (115) T ss_dssp BSSCEEETTTCCEE T ss_pred CCCEEECCCCCCEE T ss_conf 87779899999888 No 258 >3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, apoptosis, cytoplasm, metal-binding, nucleus, phosphoprotein, transcription; 1.80A {Homo sapiens} Probab=29.47 E-value=15 Score=16.82 Aligned_cols=20 Identities=0% Similarity=-0.209 Sum_probs=13.2 Q ss_pred CCCCCCCCCCCEECHHHHHC Q ss_conf 88722778987153233101 Q gi|254780459|r 24 KQVIVSPYTQNSWPLAYFEA 43 (129) Q Consensus 24 k~PiiCP~CG~e~~~~~~~~ 43 (129) ..|-.||-||.-|--..-++ T Consensus 5 ~Kp~~C~vC~krYKn~nGL~ 24 (48) T 3iuf_A 5 DKPYACDICGKRYKNRPGLS 24 (48) T ss_dssp TSCEECTTTCCEESSHHHHH T ss_pred CCCCCCCHHHHHHCCCCCCH T ss_conf 77610612435542787620 No 259 >2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens} Probab=29.36 E-value=18 Score=16.38 Aligned_cols=33 Identities=15% Similarity=0.303 Sum_probs=21.3 Q ss_pred CCCC-CCCCEEE----------ECCCCCCCCCCCCCEECHHHHH Q ss_conf 1178-8887442----------1488872277898715323310 Q gi|254780459|r 10 RTCP-DTGKRFY----------DLNKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 10 R~C~-~Cg~KFY----------Dlnk~PiiCP~CG~e~~~~~~~ 42 (129) ..|| .||.++- .=-+.++.|++||..|....+. T Consensus 17 v~C~~~C~~~i~r~~l~~H~~~~C~~r~v~C~~C~~~~~~~~l~ 60 (76) T 2yuc_A 17 IPCPNRCPMKLSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYE 60 (76) T ss_dssp CBCTTCCSCBCCSSSSTTTTTTSCTTSCCCCSSSCCCCCHHHHH T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH T ss_conf 47761204496898998665662895561799997304899999 No 260 >1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2hst_A Probab=29.35 E-value=14 Score=16.96 Aligned_cols=29 Identities=14% Similarity=0.040 Sum_probs=19.4 Q ss_pred CCCCCCCCCEEEE-------CCCCCCCCCCCCCEEC Q ss_conf 3117888874421-------4888722778987153 Q gi|254780459|r 9 KRTCPDTGKRFYD-------LNKQVIVSPYTQNSWP 37 (129) Q Consensus 9 KR~C~~Cg~KFYD-------lnk~PiiCP~CG~e~~ 37 (129) +-.|++||...-= -.+.+..||.||.+.. T Consensus 332 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (437) T 1dt9_A 332 VLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHE 367 (437) T ss_dssp CC---------CCCBCTTCSSCCCCCC--------- T ss_pred EEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHH T ss_conf 996488873378850510024555567754574310 No 261 >1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1 Probab=28.90 E-value=18 Score=16.36 Aligned_cols=19 Identities=16% Similarity=0.066 Sum_probs=13.2 Q ss_pred ECCCCCCCCCCCCCEECHH Q ss_conf 1488872277898715323 Q gi|254780459|r 21 DLNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 21 Dlnk~PiiCP~CG~e~~~~ 39 (129) .|.+---.||-||++..-+ T Consensus 42 ELk~a~GkCPvCgreLtEe 60 (112) T 1l8d_A 42 ELKKAKGKCPVCGRELTDE 60 (112) T ss_dssp HHTTCSEECTTTCCEECHH T ss_pred HHHHHCCCCCCCCCCCCHH T ss_conf 9997478799889937689 No 262 >3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3 Probab=28.80 E-value=30 Score=15.01 Aligned_cols=32 Identities=19% Similarity=0.217 Sum_probs=21.4 Q ss_pred CCCCCCCCCE------EEECCCC-CCCCCCCCCEECHHH Q ss_conf 3117888874------4214888-722778987153233 Q gi|254780459|r 9 KRTCPDTGKR------FYDLNKQ-VIVSPYTQNSWPLAY 40 (129) Q Consensus 9 KR~C~~Cg~K------FYDlnk~-PiiCP~CG~e~~~~~ 40 (129) --.||--|+. +.+.+.. =|.||+-|..|++.. T Consensus 44 ~n~CpH~g~~L~~~g~~~~~~~~~~i~Cp~Hg~~Fdl~t 82 (119) T 3c0d_A 44 QDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKS 82 (119) T ss_dssp ESEETTTTEECGGGSEEEESSSSEEEECTTTCCEEETTT T ss_pred ECCCCCCCCCCCCCCEEECCCCCCEEECCCCCCEEECCC T ss_conf 862899995133385540149942798886898999998 No 263 >1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Probab=28.79 E-value=24 Score=15.53 Aligned_cols=31 Identities=10% Similarity=0.055 Sum_probs=25.3 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCEECHHH Q ss_conf 1178888744214888722778987153233 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~ 40 (129) .+|.-|+...++-+..=|.|-.|+.-|-+.= T Consensus 17 ~~C~vC~~~~~~~~~~~i~Cd~C~~~~H~~C 47 (88) T 1wev_A 17 LACVVCRQMTVASGNQLVECQECHNLYHQDC 47 (88) T ss_dssp CSCSSSCCCCCCTTCCEEECSSSCCEEETTT T ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCCCHHH T ss_conf 9875889986889997878999975034625 No 264 >2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=28.77 E-value=18 Score=16.32 Aligned_cols=20 Identities=0% Similarity=-0.174 Sum_probs=14.3 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +..|-.|+.||..|.-...+ T Consensus 8 Gekpy~C~~Cgk~F~~~~~L 27 (42) T 2eos_A 8 GEKPYPCEICGTRFRHLQTL 27 (42) T ss_dssp SSCCBCCSSSCCCBSSHHHH T ss_pred CCCCEECCCCCCEECCHHHH T ss_conf 98897589889840788999 No 265 >3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} Probab=28.47 E-value=22 Score=15.79 Aligned_cols=31 Identities=10% Similarity=0.192 Sum_probs=21.7 Q ss_pred CCCCCCCCCEEE--ECCCCCCCCCCCCCEECHH Q ss_conf 311788887442--1488872277898715323 Q gi|254780459|r 9 KRTCPDTGKRFY--DLNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 9 KR~C~~Cg~KFY--Dlnk~PiiCP~CG~e~~~~ 39 (129) -.+||.-|...- -+...-|+||..|..|++. T Consensus 39 ~~~CpH~g~~L~~G~~~~~~i~CP~Hg~~F~l~ 71 (106) T 3dqy_A 39 QDTCTHGDWALSDGYLDGDIVECTLHFGKFCVR 71 (106) T ss_dssp ESBCSSSSCBGGGSEEETTEEECTTTCCEEETT T ss_pred ECCCCCCCCCCCCCCCCCCEEEECCCCCEEECC T ss_conf 688999997666632809999988889899999 No 266 >2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2} Probab=27.92 E-value=21 Score=15.98 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=15.8 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCEEC Q ss_conf 1178888744214888722778987153 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQVIVSPYTQNSWP 37 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~ 37 (129) ..|..|..-| +.-+.||-|+.+.. T Consensus 19 ~hC~~C~~~~----~~~a~CPdC~~~Lq 42 (81) T 2jrp_A 19 AHCETCAKDF----SLQALCPDCRQPLQ 42 (81) T ss_dssp EECTTTCCEE----EEEEECSSSCSCCC T ss_pred EECHHHHHHH----HHEEECCCCCCHHH T ss_conf 7806766446----64664876436799 No 267 >2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=27.70 E-value=28 Score=15.15 Aligned_cols=13 Identities=0% Similarity=0.023 Sum_probs=7.8 Q ss_pred CCCCCCCCCEECH Q ss_conf 7227789871532 Q gi|254780459|r 26 VIVSPYTQNSWPL 38 (129) Q Consensus 26 PiiCP~CG~e~~~ 38 (129) -..||-|.+.|.. T Consensus 58 ~~~Cp~Cr~~y~~ 70 (80) T 2d8s_A 58 TRCCELCKYEFIM 70 (80) T ss_dssp CSBCSSSCCBCCC T ss_pred CCCCCCCCCEEEE T ss_conf 9838578980476 No 268 >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* Probab=27.58 E-value=24 Score=15.57 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=19.0 Q ss_pred CCCCCCCEE---EECCCCCCCCCCCCC Q ss_conf 178888744---214888722778987 Q gi|254780459|r 11 TCPDTGKRF---YDLNKQVIVSPYTQN 34 (129) Q Consensus 11 ~C~~Cg~KF---YDlnk~PiiCP~CG~ 34 (129) .||.||..| |-||.--=.||.|.. T Consensus 130 ~~~~~g~~~~~~FSfNsP~GaC~~C~G 156 (842) T 2vf7_A 130 YPPGQGIVYAEGFSPNTPEGACPECHG 156 (842) T ss_dssp CCTTCCCCCGGGGCTTSTTTBCTTTTS T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 989988560577688963012853688 No 269 >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Probab=27.57 E-value=31 Score=14.87 Aligned_cols=24 Identities=13% Similarity=0.088 Sum_probs=18.0 Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCEE Q ss_conf 3117888874421488872277898715 Q gi|254780459|r 9 KRTCPDTGKRFYDLNKQVIVSPYTQNSW 36 (129) Q Consensus 9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e~ 36 (129) .++|..|... ...++.||+|+..+ T Consensus 49 ~~~C~~C~~~----~~~~~~C~~C~~~~ 72 (490) T 3n71_A 49 NFVCHTCFKR----QEKLHRCGQCKFAH 72 (490) T ss_dssp TTBCTTTCCB----CSCCEECTTTSCCE T ss_pred CCHHHHHCCC----CCCCCCCCCCCCEE T ss_conf 7610121576----67775699998153 No 270 >1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4 Probab=27.49 E-value=12 Score=17.44 Aligned_cols=11 Identities=9% Similarity=0.202 Sum_probs=4.6 Q ss_pred CCCCCCCCCEE Q ss_conf 72277898715 Q gi|254780459|r 26 VIVSPYTQNSW 36 (129) Q Consensus 26 PiiCP~CG~e~ 36 (129) +..|+.|+..| T Consensus 93 ~~~C~~C~~~f 103 (127) T 1zu1_A 93 SKCCPVCNMTF 103 (127) T ss_dssp TTEETTTTEEC T ss_pred CCCCCCCCCCC T ss_conf 96778438497 No 271 >1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=27.30 E-value=17 Score=16.52 Aligned_cols=27 Identities=11% Similarity=0.203 Sum_probs=17.4 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCEECHH Q ss_conf 17888874421488872277898715323 Q gi|254780459|r 11 TCPDTGKRFYDLNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~ 39 (129) .|.-.+-|- +---|++|+.|+..|=.. T Consensus 14 rCs~~~C~~--~~~lp~~C~~C~~~FC~~ 40 (63) T 1x4v_A 14 KCERAGCRQ--REMMKLTCERCSRNFCIK 40 (63) T ss_dssp CCCSTTCCC--CCSSCCBCSSSCCBCCHH T ss_pred CCCCCCCCC--CCCEEEECCCCCCCHHHC T ss_conf 489877888--642355754438602251 No 272 >1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A Probab=27.03 E-value=24 Score=15.54 Aligned_cols=31 Identities=13% Similarity=0.090 Sum_probs=19.4 Q ss_pred CCCCCCCCEE--EECCCCCCCCCCCCCEECHHH Q ss_conf 1178888744--214888722778987153233 Q gi|254780459|r 10 RTCPDTGKRF--YDLNKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 10 R~C~~Cg~KF--YDlnk~PiiCP~CG~e~~~~~ 40 (129) ..||--|... -.+...-|+||+.|..|++.. T Consensus 42 ~~CpH~g~~L~~g~~~~~~i~Cp~H~~~f~l~t 74 (111) T 1vm9_A 42 AMCPHQEILLSEGSYEGGVITCRAHLWTFNDGT 74 (111) T ss_dssp SBCSSSSCBGGGSEEETTEEECTTTCCEEETTT T ss_pred CCCCCCCCEEEEEEECCCEEEECCCCCEEECCC T ss_conf 628988957255306699999489998999999 No 273 >3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis, cytoplasm, polymorphism, zinc, zinc-FIN metal binding protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D Probab=27.02 E-value=23 Score=15.69 Aligned_cols=19 Identities=11% Similarity=-0.024 Sum_probs=14.3 Q ss_pred EEECCC-CCCCCCCCCCEEC Q ss_conf 421488-8722778987153 Q gi|254780459|r 19 FYDLNK-QVIVSPYTQNSWP 37 (129) Q Consensus 19 FYDlnk-~PiiCP~CG~e~~ 37 (129) ||=.++ +-+.|.+||.++. T Consensus 38 Fyytg~~D~v~Cf~C~~~l~ 57 (85) T 3m1d_A 38 FYYTGVNDKVKCFCCGLMLD 57 (85) T ss_dssp EEECSSTTCEEETTTCCEEC T ss_pred CEECCCCCEEEECCCCCEEC T ss_conf 88879999889596988913 No 274 >2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D* Probab=27.00 E-value=24 Score=15.59 Aligned_cols=31 Identities=19% Similarity=0.396 Sum_probs=20.9 Q ss_pred CCCCCCCCCEE--EECCCCCCCCCCCCCEECHH Q ss_conf 31178888744--21488872277898715323 Q gi|254780459|r 9 KRTCPDTGKRF--YDLNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 9 KR~C~~Cg~KF--YDlnk~PiiCP~CG~e~~~~ 39 (129) --+||-.|+.. ..+...-|+||+.|..|.+. T Consensus 43 ~~~CpH~g~~L~~g~~~~~~i~Cp~H~~~f~l~ 75 (115) T 2de6_D 43 EDTCTHGIASLSEGTLDGDVIECPFHGGAFNVC 75 (115) T ss_dssp ESBCTTSSCBGGGSEEETTEEECTTTCCEEETT T ss_pred ECCCCCCCCEEEECCCCCCEEECCCCCCEEECC T ss_conf 760898886635212679999717989999999 No 275 >2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Probab=26.92 E-value=19 Score=16.19 Aligned_cols=20 Identities=5% Similarity=-0.122 Sum_probs=14.5 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +..|-.|+.||..|.-...+ T Consensus 9 gekp~~C~~Cgk~F~~~~~L 28 (46) T 2eoh_A 9 GKKPYECKECRKTFIQIGHL 28 (46) T ss_dssp CSCSCCCSSSCCCCSSHHHH T ss_pred CCCCEECCCCCCCCCCHHHH T ss_conf 98882899899787854765 No 276 >2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1 Probab=26.88 E-value=27 Score=15.30 Aligned_cols=29 Identities=24% Similarity=0.485 Sum_probs=22.6 Q ss_pred HHHCCCC-----CCCCCCCEEEECCCCCCCCCCCCC Q ss_conf 2227831-----178888744214888722778987 Q gi|254780459|r 4 PELGTKR-----TCPDTGKRFYDLNKQVIVSPYTQN 34 (129) Q Consensus 4 ~elG~KR-----~C~~Cg~KFYDlnk~PiiCP~CG~ 34 (129) +.+|+.+ .|--||.+=|-+.|. .|-+||. T Consensus 6 ~SfGKr~~KtH~lCrRCG~~syH~qK~--~CasCGy 39 (97) T 2zkr_2 6 SSFGKRRNKTHTLCRRCGSKAYHLQKS--TCGKCGY 39 (97) T ss_dssp SSCSCSCCCCEECCTTTCSSCEETTSC--CBTTTCT T ss_pred CCCCCCCCCCCCHHCCCCCHHHHCCCC--CCCCCCC T ss_conf 676776787645102769624430303--0100389 No 277 >2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus dsm 3638} PDB: 2dcu_B* Probab=26.74 E-value=21 Score=15.95 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=20.0 Q ss_pred CCCCCCCEEEECCCC----CCCCCCCCCEECHHHHH Q ss_conf 178888744214888----72277898715323310 Q gi|254780459|r 11 TCPDTGKRFYDLNKQ----VIVSPYTQNSWPLAYFE 42 (129) Q Consensus 11 ~C~~Cg~KFYDlnk~----PiiCP~CG~e~~~~~~~ 42 (129) +|++|+.-=..|-|. =+.|=.||+.-+...++ T Consensus 106 lC~~C~spdT~l~k~~r~~~l~C~aCGa~~~V~~i~ 141 (148) T 2d74_B 106 ICPVCGSPDTKIIKRDRFHFLKCEACGAETPIQHLL 141 (148) T ss_dssp SCSSSCCTTCCCCBSSSSBCCCCSSSCCCCCCCC-- T ss_pred ECCCCCCCCCEEEEECCEEEEEECCCCCCCCHHHHH T ss_conf 999999974099995880999805689998507888 No 278 >2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=26.68 E-value=21 Score=15.88 Aligned_cols=20 Identities=10% Similarity=0.052 Sum_probs=14.3 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +..|-.|+.||..|.-...+ T Consensus 9 ~Ekpy~C~~Cgk~F~~~~~L 28 (44) T 2emb_A 9 TRKRYECSKCQATFNLRKHL 28 (44) T ss_dssp CCSSEECTTTCCEESCHHHH T ss_pred CCCCEECCCCCCCCCCHHHH T ss_conf 98696789998955877999 No 279 >1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1 Probab=26.17 E-value=13 Score=17.18 Aligned_cols=10 Identities=30% Similarity=0.341 Sum_probs=4.8 Q ss_pred CCCCCCCCCC Q ss_conf 8722778987 Q gi|254780459|r 25 QVIVSPYTQN 34 (129) Q Consensus 25 ~PiiCP~CG~ 34 (129) .-+.||+||. T Consensus 14 ~~~~Cp~C~~ 23 (57) T 1qyp_A 14 TKITCPKCGN 23 (57) T ss_dssp EECCCTTTCC T ss_pred CCCCCCCCCC T ss_conf 3389989969 No 280 >1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=26.09 E-value=9.5 Score=18.02 Aligned_cols=33 Identities=6% Similarity=0.159 Sum_probs=22.0 Q ss_pred CHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEE Q ss_conf 5222783117888874421488872277898715 Q gi|254780459|r 3 KPELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSW 36 (129) Q Consensus 3 K~elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~ 36 (129) ++.-=.|..|..|.+|--=+.-.+..| .||..| T Consensus 9 ~~~~~~~~RC~~C~KKl~L~~~~~~~C-rCg~~F 41 (67) T 1x4w_A 9 RSKQKSRRRCFQCQTKLELVQQELGSC-RCGYVF 41 (67) T ss_dssp CCSCSCTTBCSSSCCBCCHHHHHHHCC-SSSCCC T ss_pred CCCCCCCCCCHHHCCCCCCCCCEECCC-CCCCCH T ss_conf 667766874555478711355300445-577602 No 281 >2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Probab=25.85 E-value=21 Score=15.97 Aligned_cols=18 Identities=0% Similarity=-0.106 Sum_probs=13.2 Q ss_pred CCCCCCCCCCCCEECHHH Q ss_conf 888722778987153233 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~ 40 (129) +..|-.|+.||..|.-.. T Consensus 9 geKpy~C~~C~k~F~~~~ 26 (46) T 2emz_A 9 GERPFKCNECGKGFGRRS 26 (46) T ss_dssp CCCSCCCSSSCCCCSSHH T ss_pred CCCCEECCCCCCCCCCHH T ss_conf 988968998898848889 No 282 >1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A Probab=25.59 E-value=19 Score=16.13 Aligned_cols=18 Identities=6% Similarity=0.054 Sum_probs=11.6 Q ss_pred CCCCC--CCCCCEECHHHHH Q ss_conf 87227--7898715323310 Q gi|254780459|r 25 QVIVS--PYTQNSWPLAYFE 42 (129) Q Consensus 25 ~PiiC--P~CG~e~~~~~~~ 42 (129) .|-+| |.||..|.-..-+ T Consensus 1 kpf~C~~~~C~k~F~~~~~L 20 (31) T 1sp2_A 1 RPFMCTWSYCGKRFTRSDEL 20 (31) T ss_dssp CCCBCCSTTCCCBCSSHHHH T ss_pred CCCCCCCCCCCCCCCCHHHH T ss_conf 91899099889463975776 No 283 >2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens} Probab=25.48 E-value=34 Score=14.64 Aligned_cols=28 Identities=11% Similarity=0.071 Sum_probs=15.8 Q ss_pred CCCCC--CCCEE-EECCCC-----CCCCCCCCCEEC Q ss_conf 11788--88744-214888-----722778987153 Q gi|254780459|r 10 RTCPD--TGKRF-YDLNKQ-----VIVSPYTQNSWP 37 (129) Q Consensus 10 R~C~~--Cg~KF-YDlnk~-----PiiCP~CG~e~~ 37 (129) |-||+ |+.-+ |+=+.. +.+|++||..|= T Consensus 26 ~wCP~p~C~~~i~~~~~~~~~~c~~~~c~~C~~~fC 61 (80) T 2jmo_A 26 VLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFC 61 (80) T ss_dssp CCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEE T ss_pred EECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEC T ss_conf 689799997427878987754557861399959667 No 284 >2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Probab=25.43 E-value=23 Score=15.68 Aligned_cols=20 Identities=5% Similarity=-0.122 Sum_probs=14.2 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +..|-.|+.||..|.-...+ T Consensus 9 GeKpy~C~~Cgk~F~~~~~L 28 (44) T 2eof_A 9 GEKPYECNECQKAFNTKSNL 28 (44) T ss_dssp CCCSEECTTTCCEESCHHHH T ss_pred CCCCEECCCCCCEECCHHHH T ss_conf 99794789869982877887 No 285 >3ofq_1 50S ribosomal protein L33; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 3fik_1 2wwq_4 3ofr_1* 3i1n_1 1vs8_1 1vs6_1 1vt2_1 3i1p_1 3i1r_1 3i1t_1 3i20_1 3i22_1 3kcr_1 3orb_1* 2gya_1 2gyc_1 2qam_1* 1p85_1 1p86_1 2awb_1 ... Probab=25.43 E-value=22 Score=15.86 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=20.0 Q ss_pred CCCCCCCCCCEEEECCCCCC----------CCCCCCCE Q ss_conf 83117888874421488872----------27789871 Q gi|254780459|r 8 TKRTCPDTGKRFYDLNKQVI----------VSPYTQNS 35 (129) Q Consensus 8 ~KR~C~~Cg~KFYDlnk~Pi----------iCP~CG~e 35 (129) +|-+|..|+-.||=..|.+- -||.|+.- T Consensus 6 I~L~st~~tg~~Y~t~Kn~~~~~~rLel~Kycp~~~kH 43 (50) T 3ofq_1 6 IKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQH 43 (50) T ss_dssp ECCBCSSSCCCBCCEEECTTTCCSCCCCCEECTTTSSE T ss_pred EEEEEECCCCCEEEECCCCCCCCCCEEEECCCCCCCCE T ss_conf 99998278884597658889995024797438888715 No 286 >2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=25.34 E-value=25 Score=15.45 Aligned_cols=20 Identities=10% Similarity=-0.097 Sum_probs=14.0 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +..|-.|+.||..|.-...+ T Consensus 7 gekpy~C~~Cgk~F~~~~~L 26 (41) T 2ept_A 7 GQRVYECQECGKSFRQKGSL 26 (41) T ss_dssp CCCCEECSSSCCEESSHHHH T ss_pred CCCCEECCCCCCEECCHHHH T ss_conf 99798689869864867899 No 287 >2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Probab=25.10 E-value=25 Score=15.47 Aligned_cols=18 Identities=6% Similarity=-0.058 Sum_probs=13.1 Q ss_pred CCCCCCCCCCCCEECHHH Q ss_conf 888722778987153233 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~ 40 (129) +..|-.|..||..|.-.. T Consensus 8 GeKPy~C~~CgK~F~~~~ 25 (42) T 2epc_A 8 GETPYLCGQCGKSFTQRG 25 (42) T ss_dssp SSCCEECSSSCCEESSHH T ss_pred CCCCEECCCCCCCCCCHH T ss_conf 988988899998467678 No 288 >2vm5_A Baculoviral IAP repeat-containing protein 1; baculoviral inhibitor of apoptosis repeat-containing 1, BIR2, BIRC1, apoptosis, polymorphism; 1.80A {Homo sapiens} Probab=25.08 E-value=26 Score=15.34 Aligned_cols=19 Identities=5% Similarity=-0.074 Sum_probs=13.9 Q ss_pred EEECC-CCCCCCCCCCCEEC Q ss_conf 42148-88722778987153 Q gi|254780459|r 19 FYDLN-KQVIVSPYTQNSWP 37 (129) Q Consensus 19 FYDln-k~PiiCP~CG~e~~ 37 (129) ||=.+ .+-+.|.+||.++. T Consensus 48 Fyytg~~D~v~Cf~C~~~l~ 67 (106) T 2vm5_A 48 FVFTGKQDTVQCFSCGGCLG 67 (106) T ss_dssp EEECSSTTCEEETTTCCEEE T ss_pred CEECCCCCCEEECCCCCEEC T ss_conf 47889997169531698914 No 289 >2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=25.07 E-value=34 Score=14.63 Aligned_cols=32 Identities=6% Similarity=-0.026 Sum_probs=21.1 Q ss_pred HCCCCCCCCCCCEEEECCCCCCCCCCCCCEECHHHH Q ss_conf 278311788887442148887227789871532331 Q gi|254780459|r 6 LGTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 6 lG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~ 41 (129) +-...+|+=|-..| ++|++.+.||+.|--.=+ T Consensus 12 ~~~~~~C~IC~~~~----~~~~~~~~C~H~fC~~Ci 43 (72) T 2djb_A 12 LTPYILCSICKGYL----IDATTITECLHTFCKSCI 43 (72) T ss_dssp CCGGGSCTTTSSCC----SSCEECSSSCCEECHHHH T ss_pred CCCCCCCCCCCCHH----CCCCEECCCCCCCCHHHH T ss_conf 89998981169440----197188989983698999 No 290 >1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Probab=24.95 E-value=8.8 Score=18.23 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=13.4 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCEEC Q ss_conf 1178888744214888722778987153 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQVIVSPYTQNSWP 37 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~ 37 (129) -.||-|-.-| +.|++-| ||+.|= T Consensus 22 l~C~IC~~~~----~~p~~~~-CgH~FC 44 (112) T 1jm7_A 22 LECPICLELI----KEPVSTK-CDHIFC 44 (112) T ss_dssp TSCSSSCCCC----SSCCBCT-TSCCCC T ss_pred CCCCCCCCCC----CCEEECC-CCCHHH T ss_conf 7998769203----8927847-996171 No 291 >2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1 Probab=24.93 E-value=32 Score=14.78 Aligned_cols=24 Identities=8% Similarity=0.224 Sum_probs=18.2 Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCCEE Q ss_conf 783117888874421488872277898715 Q gi|254780459|r 7 GTKRTCPDTGKRFYDLNKQVIVSPYTQNSW 36 (129) Q Consensus 7 G~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~ 36 (129) -.++.|..||. +....|+.|+..+ T Consensus 7 ~~~~~C~~C~~------~~~~~Cs~C~~~~ 30 (52) T 2jw6_A 7 RKEQSCVNCGR------EAMSECTGCHKVN 30 (52) T ss_dssp ----CCSSSSS------SCSEECTTTCSSE T ss_pred CCCCCCCCCCC------CCCCCCCCCCCEE T ss_conf 68883778996------4037489999677 No 292 >1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 Probab=24.80 E-value=20 Score=16.11 Aligned_cols=28 Identities=4% Similarity=-0.161 Sum_probs=10.9 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCEECH Q ss_conf 1788887442148887227789871532 Q gi|254780459|r 11 TCPDTGKRFYDLNKQVIVSPYTQNSWPL 38 (129) Q Consensus 11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~ 38 (129) +|+=|-.-+-+-...|--|.+|+..|-. T Consensus 8 ~C~IC~~~~~~~~~~pc~C~g~~h~~H~ 35 (60) T 1vyx_A 8 VCWICNEELGNERFRACGCTGELENVHR 35 (60) T ss_dssp EETTTTEECSCCCCCSCCCSSGGGSCCH T ss_pred CCEECCCCCCCCCEECCCCCCCCCEECH T ss_conf 9900786278765641431797687868 No 293 >2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=24.68 E-value=25 Score=15.48 Aligned_cols=19 Identities=0% Similarity=-0.268 Sum_probs=13.3 Q ss_pred CCCCCCCCCCCCEECHHHH Q ss_conf 8887227789871532331 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~ 41 (129) +..|-.|+.||..|.-... T Consensus 9 gEkpy~C~~CgK~F~~~s~ 27 (46) T 2yso_A 9 REKSHQCRECGEIFFQYVS 27 (46) T ss_dssp CCCCEECTTTCCEESSHHH T ss_pred CCCCCCCCCCCCCCCCHHH T ss_conf 9988288999897774587 No 294 >1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens} Probab=24.62 E-value=25 Score=15.46 Aligned_cols=17 Identities=6% Similarity=-0.001 Sum_probs=11.4 Q ss_pred CCCCCCCC--CCCEECHHH Q ss_conf 88722778--987153233 Q gi|254780459|r 24 KQVIVSPY--TQNSWPLAY 40 (129) Q Consensus 24 k~PiiCP~--CG~e~~~~~ 40 (129) +.|-+|++ ||..|.-.. T Consensus 6 ~k~y~C~~~~C~k~F~~~~ 24 (37) T 1va1_A 6 KKQHICHIQGCGKVYGKTS 24 (37) T ss_dssp CCCEECCSTTCCCEESCHH T ss_pred CCCCCCCCCCCCCEECCHH T ss_conf 8887991989899759657 No 295 >1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1 Probab=24.31 E-value=36 Score=14.50 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=17.7 Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCEEC Q ss_conf 31178888744214888722778987153 Q gi|254780459|r 9 KRTCPDTGKRFYDLNKQVIVSPYTQNSWP 37 (129) Q Consensus 9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~ 37 (129) ++.|..|.+|-= |- .++.| .||..|= T Consensus 25 ~~RC~~C~kKl~-l~-~~~~C-rCg~~FC 50 (85) T 1wff_A 25 MKHCFLCGKKTG-LA-TSFEC-RCGNNFC 50 (85) T ss_dssp CCBCSSSCCBCS-SS-SCEEC-TTCCEEC T ss_pred CCCCHHCCCEEC-CC-CCEEC-CCCCCHH T ss_conf 884731089616-88-77563-6889843 No 296 >1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A Probab=24.26 E-value=35 Score=14.58 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=18.5 Q ss_pred CCCCCCCCEEEECCC----CCCCCCCCCC Q ss_conf 117888874421488----8722778987 Q gi|254780459|r 10 RTCPDTGKRFYDLNK----QVIVSPYTQN 34 (129) Q Consensus 10 R~C~~Cg~KFYDlnk----~PiiCP~CG~ 34 (129) -+|..||.+|-|-+= .-.||=.|-. T Consensus 6 ~~C~eC~~~~~d~~l~~~F~~~VC~~Ck~ 34 (111) T 1d4u_A 6 VICEECGKEFMDSYLMDHFDLPTCDDCRD 34 (111) T ss_dssp EECTTTCCEESCSSSTTTTSCCCCTTTCS T ss_pred HHHHHCCCHHHHHHHHHHCCEEECHHHCC T ss_conf 78988289221499998639004052438 No 297 >3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A* Probab=24.21 E-value=21 Score=15.96 Aligned_cols=12 Identities=8% Similarity=0.049 Sum_probs=8.4 Q ss_pred CCCCCCCCCCEE Q ss_conf 872277898715 Q gi|254780459|r 25 QVIVSPYTQNSW 36 (129) Q Consensus 25 ~PiiCP~CG~e~ 36 (129) ....||.||+.+ T Consensus 526 pd~~cp~c~~~~ 537 (1041) T 3f2b_A 526 PDKNCPRCGTKY 537 (1041) T ss_dssp CCCBCTTTCCBC T ss_pred CCCCCCHHHHHH T ss_conf 654452110133 No 298 >2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=24.14 E-value=27 Score=15.29 Aligned_cols=20 Identities=0% Similarity=0.008 Sum_probs=14.2 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +..|-.|+.||..|.-...+ T Consensus 9 geKpy~C~~Cgk~F~~~s~L 28 (44) T 2yu5_A 9 GENPFKCSKCDRVFTQRNYL 28 (44) T ss_dssp CCCSEECSSSSCEESSSHHH T ss_pred CCCCEECCCCCCCCCCHHHH T ss_conf 98694689989960866899 No 299 >2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=23.90 E-value=27 Score=15.30 Aligned_cols=20 Identities=0% Similarity=0.069 Sum_probs=14.3 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +..|-.|+.||..|.-...+ T Consensus 7 geKpy~C~~Cgk~F~~~~~L 26 (44) T 2emx_A 7 GEKPFGCSCCEKAFSSKSYL 26 (44) T ss_dssp SCCCEECSSSSCEESSHHHH T ss_pred CCCCEECCCCCCEECCHHHH T ss_conf 99897899989873877899 No 300 >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} Probab=23.81 E-value=13 Score=17.10 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=14.8 Q ss_pred CCCCCCCCCEE----------EE---CCCCCCCCCCCC Q ss_conf 31178888744----------21---488872277898 Q gi|254780459|r 9 KRTCPDTGKRF----------YD---LNKQVIVSPYTQ 33 (129) Q Consensus 9 KR~C~~Cg~KF----------YD---lnk~PiiCP~CG 33 (129) ++.|+.||+.| +- |.+.+++|--|= T Consensus 4 ~~kC~GCG~~lQ~~d~~~~GYvp~~~~~~~~~~C~RC~ 41 (368) T 3h2y_A 4 TIKCIGCGVEIQTEDKNEVGYAPASSLEKEQVICQRCF 41 (368) T ss_dssp -------------------------------------- T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEHHHH T ss_conf 88858987300777899898886789566777862241 No 301 >2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A* Probab=23.61 E-value=34 Score=14.68 Aligned_cols=29 Identities=3% Similarity=-0.038 Sum_probs=20.8 Q ss_pred CCCCCCCCEEEECCCCC---CCCCCCCCEECH Q ss_conf 11788887442148887---227789871532 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQV---IVSPYTQNSWPL 38 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~P---iiCP~CG~e~~~ 38 (129) |+=..-|..+|.++..+ ++|=.||..+.. T Consensus 74 ~i~~~~~~~~y~~~~~~h~h~iC~~Cg~i~~~ 105 (145) T 2fe3_A 74 ELTYGDASSRFDFVTSDHYHAICENCGKIVDF 105 (145) T ss_dssp EECCTTSCCEEEECCCCEEEEEETTTCCEEEC T ss_pred EEEECCCCEEEECCCCCCEEEEECCCCCEEEE T ss_conf 99718981799537885207998899988983 No 302 >1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Probab=23.44 E-value=30 Score=14.94 Aligned_cols=10 Identities=20% Similarity=0.594 Sum_probs=4.4 Q ss_pred HCCCCCCCCC Q ss_conf 2783117888 Q gi|254780459|r 6 LGTKRTCPDT 15 (129) Q Consensus 6 lG~KR~C~~C 15 (129) .|..++|+.| T Consensus 51 ~~~~~~C~~C 60 (248) T 1nlt_A 51 KGAVKKCTSC 60 (248) T ss_dssp TTTCCCCTTS T ss_pred CCCCCCCCCC T ss_conf 9988737887 No 303 >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Probab=23.10 E-value=35 Score=14.58 Aligned_cols=29 Identities=10% Similarity=0.098 Sum_probs=19.7 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCEECHHHHHCC Q ss_conf 1788887442148887227789871532331012 Q gi|254780459|r 11 TCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEAP 44 (129) Q Consensus 11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~~ 44 (129) +||-|. +|-++|++.| ||..|.-..+.+- T Consensus 210 ~c~Is~----elm~dPv~~~-~g~tyer~~i~~~ 238 (281) T 2c2l_A 210 CGKISF----ELMREPCITP-SGITYDRKDIEEH 238 (281) T ss_dssp BCTTTC----SBCSSEEECS-SCCEEETTHHHHH T ss_pred CCCHHH----HCCCCCEECC-CCCHHHHHHHHHH T ss_conf 251542----0056983468-8652649999999 No 304 >2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Probab=23.06 E-value=28 Score=15.14 Aligned_cols=20 Identities=0% Similarity=-0.167 Sum_probs=14.0 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +..|-.|+.||..|.-...+ T Consensus 8 GeKPy~C~~Cgk~F~~~~~L 27 (42) T 2en2_A 8 GEKPYKCETCGARFVQVAHL 27 (42) T ss_dssp SSCSEECTTTCCEESSHHHH T ss_pred CCCCEECCCCCCCCCCHHHH T ss_conf 97897889869983888899 No 305 >2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=22.92 E-value=28 Score=15.15 Aligned_cols=20 Identities=0% Similarity=-0.238 Sum_probs=14.1 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +-.|-.|+.||..|.-...+ T Consensus 6 ~eKPykC~~C~k~F~~~~~L 25 (36) T 2elq_A 6 SGKPFKCSLCEYATRSKSNL 25 (36) T ss_dssp CCCSEECSSSSCEESCHHHH T ss_pred CCCCEECCCCCCCCCCHHHH T ss_conf 99898689987604887999 No 306 >2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=22.75 E-value=35 Score=14.54 Aligned_cols=32 Identities=9% Similarity=0.087 Sum_probs=16.4 Q ss_pred HCCCCCCCCCCCEEEECCCCCCCCCCCCCEECHH Q ss_conf 2783117888874421488872277898715323 Q gi|254780459|r 6 LGTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 6 lG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~ 39 (129) +...-+|+=|--.|- ...+++...||+.|-.. T Consensus 12 ~~~~~~C~IC~~~~~--~~~~~~~~~C~H~fh~~ 43 (74) T 2ep4_A 12 LNLHELCAVCLEDFK--PRDELGICPCKHAFHRK 43 (74) T ss_dssp CCCSCBCSSSCCBCC--SSSCEEEETTTEEEEHH T ss_pred CCCCCEEEEECCCCC--CCCEEEECCCCCCCCHH T ss_conf 899999460297764--79848972699970699 No 307 >1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Probab=22.70 E-value=38 Score=14.37 Aligned_cols=31 Identities=10% Similarity=0.178 Sum_probs=20.3 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCEECHHHHH Q ss_conf 17888874421488872277898715323310 Q gi|254780459|r 11 TCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~ 42 (129) .|+=|=..|.+ +...+.+|.||..|-..=+. T Consensus 7 ~C~IC~~~~~~-~~~~~~~~~C~H~fh~~Ci~ 37 (55) T 1iym_A 7 ECAVCLAELED-GEEARFLPRCGHGFHAECVD 37 (55) T ss_dssp CCTTTCCCCCT-TSCCEECSSSCCEECTTHHH T ss_pred CCEEECCEEEC-CCEEEEECCCCCEECHHHHH T ss_conf 98679948457-98799918989885799999 No 308 >1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus HB8} Probab=22.67 E-value=15 Score=16.88 Aligned_cols=13 Identities=38% Similarity=0.808 Sum_probs=7.1 Q ss_pred CCCCCCCEEEECCCCCC Q ss_conf 17888874421488872 Q gi|254780459|r 11 TCPDTGKRFYDLNKQVI 27 (129) Q Consensus 11 ~C~~Cg~KFYDlnk~Pi 27 (129) +||+||+. ||-|. T Consensus 4 ~~~~~~~~----n~~p~ 16 (140) T 1v98_A 4 TCPKCGAK----NRLGT 16 (140) T ss_dssp ----------------- T ss_pred ECCCCCCC----CCCCC T ss_conf 89787766----78999 No 309 >1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIRON center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A Probab=22.63 E-value=24 Score=15.61 Aligned_cols=10 Identities=10% Similarity=0.092 Sum_probs=8.5 Q ss_pred CCCCCCCEEC Q ss_conf 2778987153 Q gi|254780459|r 28 VSPYTQNSWP 37 (129) Q Consensus 28 iCP~CG~e~~ 37 (129) +||.||..+. T Consensus 173 ~C~~CG~i~~ 182 (202) T 1yuz_A 173 LCPICGYIHK 182 (202) T ss_dssp ECSSSCCEEE T ss_pred ECCCCCCEEC T ss_conf 8899998524 No 310 >2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Probab=22.12 E-value=30 Score=14.99 Aligned_cols=20 Identities=0% Similarity=-0.117 Sum_probs=14.3 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +..|-.|+.||..|.-...+ T Consensus 9 geKpy~C~~Cgk~F~~~s~L 28 (44) T 2epv_A 9 GEKPYECNECGKAFIWKSLL 28 (44) T ss_dssp CCCSEECSSSCCEESSHHHH T ss_pred CCCCEECCCCCCCCCCHHHH T ss_conf 99896789989881877787 No 311 >3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, cytoplasm, GTP-binding; 3.50A {Schizosaccharomyces pombe} Probab=21.96 E-value=17 Score=16.42 Aligned_cols=29 Identities=7% Similarity=0.012 Sum_probs=19.5 Q ss_pred CCCCCCCCCEEEECCC---------CCCCCCCCCCEEC Q ss_conf 3117888874421488---------8722778987153 Q gi|254780459|r 9 KRTCPDTGKRFYDLNK---------QVIVSPYTQNSWP 37 (129) Q Consensus 9 KR~C~~Cg~KFYDlnk---------~PiiCP~CG~e~~ 37 (129) ...|++|+..+--+.+ ....||.||..+. T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~le 374 (441) T 3e20_C 337 EFKNSEGNPVITYMTKEQEEKDSTNSFLLDKDTGAEME 374 (441) T ss_dssp ----------CCEECSCTTTCCC--------------- T ss_pred EEECCCCCEEEEEECCCHHCCCCCCCCCCCCCCCCCHH T ss_conf 98548865156641430102444443346743464301 No 312 >2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Probab=21.96 E-value=23 Score=15.67 Aligned_cols=21 Identities=5% Similarity=0.101 Sum_probs=14.9 Q ss_pred CCCCCCCCCCCCEECHHHHHC Q ss_conf 888722778987153233101 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFEA 43 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~~ 43 (129) +..|-.|+.||..|.-...++ T Consensus 9 ~eKpy~C~~CgK~F~~~s~L~ 29 (48) T 2epr_A 9 TRKQVACEICGKIFRDVYHLN 29 (48) T ss_dssp CCCSEEETTTTEEESSHHHHH T ss_pred CCCCCCCCCCCCCCCCHHHHH T ss_conf 996828898997748768989 No 313 >2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Probab=21.88 E-value=31 Score=14.85 Aligned_cols=19 Identities=5% Similarity=-0.099 Sum_probs=14.2 Q ss_pred CCCCCCCCCCCCEECHHHH Q ss_conf 8887227789871532331 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~ 41 (129) +..|-.|..||..|.-... T Consensus 9 geKpy~C~~Cgk~F~~~s~ 27 (46) T 2el6_A 9 GVNPYKCSQCEKSFSGKLR 27 (46) T ss_dssp CCCSEECSSSSCEESSHHH T ss_pred CCCCEECCCCCCCCCCHHH T ss_conf 9979789998998588889 No 314 >2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A Probab=21.74 E-value=31 Score=14.88 Aligned_cols=20 Identities=0% Similarity=-0.197 Sum_probs=14.1 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +..|-.|..||..|.-...+ T Consensus 7 GEkpy~C~~Cgk~F~~~s~L 26 (42) T 2el5_A 7 GENPYECSECGKAFNRKDQL 26 (42) T ss_dssp SCCSEECSSSCCEESSHHHH T ss_pred CCCCEECCCCCCCCCCHHHH T ss_conf 99798799879980775899 No 315 >2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=21.51 E-value=28 Score=15.20 Aligned_cols=20 Identities=5% Similarity=-0.112 Sum_probs=14.3 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +..|-.|..||..|.-...+ T Consensus 9 geKpy~C~~CgK~F~~~s~L 28 (44) T 2eou_A 9 AKTTSECQECGKIFRHSSLL 28 (44) T ss_dssp SSCCCCCTTTCCCCSSHHHH T ss_pred CCCCCCCCCCCCEECCCHHH T ss_conf 99598289878713842405 No 316 >2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4 Probab=21.49 E-value=25 Score=15.43 Aligned_cols=16 Identities=0% Similarity=-0.164 Sum_probs=10.8 Q ss_pred CCCCCCCCCCCEECHH Q ss_conf 8872277898715323 Q gi|254780459|r 24 KQVIVSPYTQNSWPLA 39 (129) Q Consensus 24 k~PiiCP~CG~e~~~~ 39 (129) +.|--|+.||.-|... T Consensus 11 gp~~eC~~C~vkYs~~ 26 (55) T 2yrk_A 11 GTKPECTLCGVKYSAR 26 (55) T ss_dssp CCCSCCTTTTCCCCSS T ss_pred CCCCCCCCCCEEECCC T ss_conf 9945377446130564 No 317 >1dj7_A Ferredoxin thioredoxin reductase: catalytic chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding motif, electron transport; 1.60A {Synechocystis SP} SCOP: g.36.1.1 PDB: 2pu9_A 2pvo_A 2puo_A 2puk_A 2pvg_A 2pvd_A Probab=21.49 E-value=11 Score=17.60 Aligned_cols=35 Identities=23% Similarity=0.215 Sum_probs=22.7 Q ss_pred HHHCCCCCCCCCCCEEEECCCCC-----CCCC----------CCCCEECHHHHH Q ss_conf 22278311788887442148887-----2277----------898715323310 Q gi|254780459|r 4 PELGTKRTCPDTGKRFYDLNKQV-----IVSP----------YTQNSWPLAYFE 42 (129) Q Consensus 4 ~elG~KR~C~~Cg~KFYDlnk~P-----iiCP----------~CG~e~~~~~~~ 42 (129) -.+| ||-|| | |||.=++.- |||| .||--+.++.-. T Consensus 48 ~~yG-~~~CP-C--r~~~g~~eedk~~~~iCPC~~~~e~g~ChC~LF~t~e~~~ 97 (117) T 1dj7_A 48 EELG-SPLCP-C--RHYEDKEAEVKNTFWNCPCVPMRERKECHCMLFLTPDNDF 97 (117) T ss_dssp HHHS-SCBCS-S--SCCSCHHHHHHHCTTBSSCHHHHHHCCCTTSSSBCTTSTT T ss_pred HHCC-CCCCC-C--CCCCCCHHHHHCCCEECCCCCHHHCCEEEEEEEECCCCCC T ss_conf 9809-97798-7--3778868887447732489693033825576564666666 No 318 >2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Probab=21.25 E-value=29 Score=15.10 Aligned_cols=20 Identities=5% Similarity=-0.016 Sum_probs=14.1 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +..|-.|+.||..|.-...+ T Consensus 9 geKpy~C~~Cgk~F~~~s~L 28 (44) T 2en7_A 9 GMKPYVCNECGKAFRSKSYL 28 (44) T ss_dssp SSSSSCCTTTCCCCSSHHHH T ss_pred CCCCCCCCCCCCCCCCHHHH T ss_conf 99881889998997877898 No 319 >2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A Probab=21.24 E-value=34 Score=14.67 Aligned_cols=31 Identities=16% Similarity=0.314 Sum_probs=23.2 Q ss_pred CCCCCCCCEEEEC---CCCCCCCCCCCCEECHHH Q ss_conf 1178888744214---888722778987153233 Q gi|254780459|r 10 RTCPDTGKRFYDL---NKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 10 R~C~~Cg~KFYDl---nk~PiiCP~CG~e~~~~~ 40 (129) -+|+-=|++...- |..-++|||.|=.|...= T Consensus 78 N~C~HRG~~l~~~~~g~~~~~~CpYHgW~y~~dG 111 (454) T 2gbw_A 78 NSCSHRGNQICHADSGNAKAFVCNYHGWVFGQDG 111 (454) T ss_dssp SSCTTTCCCSCCCSEEECSEEECTTTCCEEETTS T ss_pred ECCCCCCCEEEECCCCCCCEEECCCCCEEECCCC T ss_conf 3388899883407888605076488874986999 No 320 >2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=21.12 E-value=33 Score=14.73 Aligned_cols=20 Identities=0% Similarity=-0.197 Sum_probs=13.8 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +..|-.|..||..|.-...+ T Consensus 9 GeKPy~C~~Cgk~F~~~s~L 28 (46) T 2em4_A 9 GQRPYECIECGKAFKTKSSL 28 (46) T ss_dssp CSSSEECSSSCCEESSHHHH T ss_pred CCCCEECCCCCCCCCCHHHH T ss_conf 99795789888874866787 No 321 >2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=21.09 E-value=33 Score=14.75 Aligned_cols=20 Identities=5% Similarity=-0.101 Sum_probs=14.6 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +..|-.|..||..|.-...+ T Consensus 6 geKPykC~~C~k~F~~~~~L 25 (36) T 2elt_A 6 SGKPYKCPQCSYASAIKANL 25 (36) T ss_dssp CCCSEECSSSSCEESSHHHH T ss_pred CCCCEECCCCCCCCCCHHHH T ss_conf 99398689998871988999 No 322 >2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Probab=21.03 E-value=13 Score=17.20 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=14.8 Q ss_pred CCCCCCCCCCCEEEEC--CCCCCCCCCCCCEECH Q ss_conf 7831178888744214--8887227789871532 Q gi|254780459|r 7 GTKRTCPDTGKRFYDL--NKQVIVSPYTQNSWPL 38 (129) Q Consensus 7 G~KR~C~~Cg~KFYDl--nk~PiiCP~CG~e~~~ 38 (129) |.--.|+=|--.|.+- ++..++.-.||..|-. T Consensus 1 g~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~Fc~ 34 (64) T 2xeu_A 1 GAMVSCPICMDGYSEIVQNGRLIVSTECGHVFCS 34 (64) T ss_dssp CCCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEH T ss_pred CCCCCCCCCCHHHHCCCCCCCCEEEECCCCEECH T ss_conf 9965991189605254545777597258997308 No 323 >2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Probab=20.64 E-value=35 Score=14.60 Aligned_cols=20 Identities=5% Similarity=-0.079 Sum_probs=13.5 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +..|-.|..||..|.-...+ T Consensus 9 GeKpy~C~~CgK~F~~~s~L 28 (46) T 2el4_A 9 GVKPYGCSQCAKTFSLKSQL 28 (46) T ss_dssp CCCSEECSSSSCEESSHHHH T ss_pred CCCCEECCCCCCEECCHHHH T ss_conf 98897899829980864676 No 324 >2qra_D XIAP, baculoviral IAP repeat-containing protein 4, inhibitor; apoptosis, signaling protein, zinc binding; 2.50A {Homo sapiens} Probab=20.58 E-value=36 Score=14.46 Aligned_cols=20 Identities=5% Similarity=-0.067 Sum_probs=13.8 Q ss_pred EEEECC-CCCCCCCCCCCEEC Q ss_conf 442148-88722778987153 Q gi|254780459|r 18 RFYDLN-KQVIVSPYTQNSWP 37 (129) Q Consensus 18 KFYDln-k~PiiCP~CG~e~~ 37 (129) =||=.+ .+-+.|.+||.++. T Consensus 63 GFYYtG~~D~V~Cf~C~~~l~ 83 (111) T 2qra_D 63 GFLYTGEGDTVRCFSCHAAVD 83 (111) T ss_dssp TEEECSSTTCEEETTTCCEEC T ss_pred CEEEECCCCEEEECCCCCEEC T ss_conf 939818999789576688945 No 325 >3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckstrin homology domain, C1 domain, acetylation; 2.73A {Homo sapiens} PDB: 2d86_A Probab=20.52 E-value=35 Score=14.60 Aligned_cols=12 Identities=8% Similarity=0.199 Sum_probs=5.4 Q ss_pred CCCCCCCCEEEE Q ss_conf 117888874421 Q gi|254780459|r 10 RTCPDTGKRFYD 21 (129) Q Consensus 10 R~C~~Cg~KFYD 21 (129) ..|..|++.|.. T Consensus 530 t~C~~C~~~~~~ 541 (587) T 3ky9_A 530 TSCKACQMLLRG 541 (587) T ss_dssp CBCTTTCSBCCS T ss_pred CCCCCCCCCCCC T ss_conf 887467882047 No 326 >2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Probab=20.46 E-value=30 Score=14.96 Aligned_cols=20 Identities=5% Similarity=-0.135 Sum_probs=14.3 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) ...|-.|+.||..|.-...+ T Consensus 9 GeKpy~C~~C~k~F~~~~~L 28 (46) T 2em0_A 9 GEKTWKCRECDMCFSQASSL 28 (46) T ss_dssp CCCCCCCSSSCCCCSSHHHH T ss_pred CCCCEECCCCCCEECCHHHH T ss_conf 98795999989872778999 No 327 >3hl5_A Baculoviral IAP repeat-containing protein 4; BIR, apoptosis, small molecule drug discovery, structure-based drug design, cytoplasm, ligase; HET: 9JZ; 1.80A {Homo sapiens} PDB: 1nw9_A 2vsl_A Probab=20.41 E-value=37 Score=14.43 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=13.8 Q ss_pred EEEECC-CCCCCCCCCCCEEC Q ss_conf 442148-88722778987153 Q gi|254780459|r 18 RFYDLN-KQVIVSPYTQNSWP 37 (129) Q Consensus 18 KFYDln-k~PiiCP~CG~e~~ 37 (129) =||=.+ .+.+.|.+||..+. T Consensus 37 GFyytg~~D~v~Cf~C~~~l~ 57 (95) T 3hl5_A 37 GFYALGEGDKVKCFHCGGGLT 57 (95) T ss_dssp TEEECSSTTCEEETTTCCEEC T ss_pred CCEECCCCCEEEECCCCCCCC T ss_conf 987879898789585688925 No 328 >1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A Probab=20.36 E-value=27 Score=15.25 Aligned_cols=36 Identities=14% Similarity=0.342 Sum_probs=26.5 Q ss_pred HHHCCCCCCCCCCCEEEECCC----------CCCCCCCCCCEECHH Q ss_conf 222783117888874421488----------872277898715323 Q gi|254780459|r 4 PELGTKRTCPDTGKRFYDLNK----------QVIVSPYTQNSWPLA 39 (129) Q Consensus 4 ~elG~KR~C~~Cg~KFYDlnk----------~PiiCP~CG~e~~~~ 39 (129) |-||.-..|..|+...|..-+ .=..|=.||..+... T Consensus 2 p~~gg~~~C~~C~~~I~~~e~v~a~g~~~H~~CF~C~~C~~~L~~~ 47 (81) T 1a7i_A 2 PNWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDST 47 (81) T ss_dssp ------CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSS T ss_pred CCCCCCCCCCCCCCEECCCEEEEECCCEECCCCCCCCCCCCCCCCC T ss_conf 5788886231078630675389888561152368806779998998 No 329 >2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Probab=20.30 E-value=34 Score=14.61 Aligned_cols=20 Identities=5% Similarity=-0.150 Sum_probs=13.6 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +..|-.|..||..|.-...+ T Consensus 9 geKpy~C~~Cgk~F~~~s~L 28 (46) T 2emm_A 9 GERPHKCNECGKSFIQSAHL 28 (46) T ss_dssp CCCSEECSSSCCEESSHHHH T ss_pred CCCCEECCCCCCCCCCHHHH T ss_conf 99893899999974878999 No 330 >2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Probab=20.29 E-value=36 Score=14.46 Aligned_cols=20 Identities=0% Similarity=-0.194 Sum_probs=14.1 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +..|-.|+.||..|.-...+ T Consensus 9 gEkpy~C~~Cgk~F~~~~~L 28 (46) T 2eoo_A 9 GERPYGCNECGKNFGRHSHL 28 (46) T ss_dssp CCCCEECSSSCCEESSHHHH T ss_pred CCCCEECCCCCCCCCCHHHH T ss_conf 99797899889985878899 No 331 >2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3 Probab=20.26 E-value=43 Score=14.00 Aligned_cols=32 Identities=13% Similarity=0.145 Sum_probs=21.4 Q ss_pred CCCCCCCCCE------EEECCCC-CCCCCCCCCEECHHH Q ss_conf 3117888874------4214888-722778987153233 Q gi|254780459|r 9 KRTCPDTGKR------FYDLNKQ-VIVSPYTQNSWPLAY 40 (129) Q Consensus 9 KR~C~~Cg~K------FYDlnk~-PiiCP~CG~e~~~~~ 40 (129) --.||-.|+- .-+.+.. -|.||+.|..|.+.. T Consensus 43 ~n~CpH~ga~ll~~G~v~~~~~~~~i~Cp~Hg~~F~l~t 81 (130) T 2jza_A 43 SNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYD 81 (130) T ss_dssp BCCCTTTSSGGGTSSEEEESSSSEEEECSSSCCEEETTT T ss_pred ECCCCCCCCCCCCCCEEECCCCCCEEECCCCCCEEECCC T ss_conf 863888997202375071436962898999997886899 No 332 >2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Probab=20.14 E-value=30 Score=14.98 Aligned_cols=18 Identities=0% Similarity=-0.239 Sum_probs=13.2 Q ss_pred CCCCCCCCCCCEECHHHH Q ss_conf 887227789871532331 Q gi|254780459|r 24 KQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 24 k~PiiCP~CG~e~~~~~~ 41 (129) ..|-.|+.||..|.-... T Consensus 10 EKpy~C~~Cgk~F~~~s~ 27 (46) T 2ytm_A 10 EKPYKCMECGKAFGDNSS 27 (46) T ss_dssp CCSSSBTTTTBCCSSHHH T ss_pred CCCEECCCCCCCCCCHHH T ss_conf 989689998996487799 No 333 >1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: g.52.1.1 PDB: 3cm2_D* 3clx_D* 3cm7_C* 1f9x_A 1g3f_A 1tfq_A* 1tft_A* 3eyl_A* 3g76_A* 2jk7_A* 2opz_A 2opy_A* 1xb0_A 1xb1_A Probab=20.05 E-value=38 Score=14.35 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=12.3 Q ss_pred EEECC-CCCCCCCCCCCEE Q ss_conf 42148-8872277898715 Q gi|254780459|r 19 FYDLN-KQVIVSPYTQNSW 36 (129) Q Consensus 19 FYDln-k~PiiCP~CG~e~ 36 (129) ||=.+ .+.+.|.+||..+ T Consensus 52 Fyytg~~D~v~Cf~C~~~l 70 (121) T 1g73_C 52 FYALGEGDKVKCFHCGGGL 70 (121) T ss_dssp EEECSSTTCEEETTTCCEE T ss_pred CEECCCCCEEEECCCCCCC T ss_conf 8787989856947588890 No 334 >1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 Probab=20.04 E-value=31 Score=14.86 Aligned_cols=19 Identities=0% Similarity=0.188 Sum_probs=13.1 Q ss_pred ECCCCCCCCCC--CCCEECHH Q ss_conf 14888722778--98715323 Q gi|254780459|r 21 DLNKQVIVSPY--TQNSWPLA 39 (129) Q Consensus 21 Dlnk~PiiCP~--CG~e~~~~ 39 (129) -.+..|-.|++ ||..|.-. T Consensus 13 h~~ekp~~C~~~~C~K~F~r~ 33 (47) T 1ncs_A 13 EMPDKTFECLFPGCTKTFKRR 33 (47) T ss_dssp EETTTEEECCCTTCCCEECSS T ss_pred CCCCCCEECCCCCCCCCCCCH T ss_conf 478979588888999985753 Done!