RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780459|ref|YP_003064872.1| hypothetical protein
CLIBASIA_01720 [Candidatus Liberibacter asiaticus str. psy62]
(129 letters)
>gnl|CDD|34179 COG4530, COG4530, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 129
Score = 51.9 bits (124), Expect = 4e-08
Identities = 51/117 (43%), Positives = 69/117 (58%), Gaps = 4/117 (3%)
Query: 1 MAKPELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEAPT---SPEKEKEICSLE 57
MAKPELGTKR P+TGK+FYDLN+ IVSPYT S+P +YFE T + E+E+E E
Sbjct: 1 MAKPELGTKRIDPETGKKFYDLNRDPIVSPYTGKSYPRSYFEETTPDAAAEEEEEEVVKE 60
Query: 58 EETEVKPFVKHTSEEEEESPISKEEDDTSLDMEYVQEMDLDDDDDFLEQNDTDTDTD 114
+ E + V+ S E+ + +D L + ++D DDDD FLE + D D
Sbjct: 61 VDAENEE-VEVVSLEDADDDPKGGDDLPDLGDDEDVDLDDDDDDTFLEDEEDDDDDV 116
>gnl|CDD|35517 KOG0296, KOG0296, KOG0296, Angio-associated migratory cell protein
(contains WD40 repeats) [Function unknown].
Length = 399
Score = 31.1 bits (70), Expect = 0.085
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 71 EEEEESPISKEEDDTSLDMEYVQEMDLDDDDDFLEQNDTDTDTDVVDMDISI 122
EEEE +EDD + +M +E + + DD+ D D + VDMD S+
Sbjct: 9 EEEEVEEEILDEDDVAQEMVVDEEDENEQDDE---MMDDDEEALEVDMDDSL 57
>gnl|CDD|37043 KOG1832, KOG1832, KOG1832, HIV-1 Vpr-binding protein [Cell cycle
control, cell division, chromosome partitioning].
Length = 1516
Score = 29.7 bits (66), Expect = 0.24
Identities = 16/58 (27%), Positives = 25/58 (43%)
Query: 71 EEEEESPISKEEDDTSLDMEYVQEMDLDDDDDFLEQNDTDTDTDVVDMDISIPDDADE 128
E+E+E +++ D +E DDD + D +D D + DI I D E
Sbjct: 1416 EDEDEDDDEEDDLDRDDGLEGDNSDSGDDDLSSEDNEDEVSDEDGDEADILIDGDFME 1473
Score = 28.5 bits (63), Expect = 0.57
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 67 KHTSEEEEESPISKEEDDTSLDMEYVQEMDLDDDDDFLEQNDTDTDTDVVDMDISIPDDA 126
+ T ++ +E EEDD + D + + + D D D + D ++D D D+S D+
Sbjct: 1401 RPTDDDSDE-----EEDDETEDEDEDDDEEDDLDRDDGLEGD---NSDSGDDDLSSEDNE 1452
Query: 127 DEN 129
DE
Sbjct: 1453 DEV 1455
Score = 27.8 bits (61), Expect = 1.0
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 71 EEEEESPISKEEDDTSLDMEYVQEMDLDD--DDDFLEQNDTDTDTDVVDMDISIPDDAD 127
++E E ++++ LD + E D D DDD +++ D +D + I D D
Sbjct: 1412 DDETEDEDEDDDEEDDLDRDDGLEGDNSDSGDDDLSSEDNEDEVSDEDGDEADILIDGD 1470
>gnl|CDD|34868 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 28.5 bits (63), Expect = 0.55
Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 15/90 (16%)
Query: 44 PTSPE-KEKEICSLEEETE----VKPFVKHTSEEEEESPISKEEDDTSLDMEYVQEMDLD 98
+ E K+++ EEE + ++ +E P + ED ++ +++ LD
Sbjct: 3942 NKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENED-----LDLPEDLKLD 3996
Query: 99 DDDDFLEQNDTDTDTDVVDMDISIPDDADE 128
+ ++ D D+D+ DMD+ D+ E
Sbjct: 3997 E-----KEGDVSKDSDLEDMDMEAADENKE 4021
>gnl|CDD|37551 KOG2340, KOG2340, KOG2340, Uncharacterized conserved protein
[Function unknown].
Length = 698
Score = 28.4 bits (63), Expect = 0.58
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 1/84 (1%)
Query: 47 PEKEKEICSLEEETEVKPFVKHTSEEEEESPISKEEDDTSLDMEYVQEMDLDDDDDFLE- 105
+ E S E +V + H S+ +E S + +D D E +E D D E
Sbjct: 12 SSAKPEGGSTETLEDVASDIDHRSDMDEVSDVESGDDFDIEDEEGKKEKVDDKSDHSEEK 71
Query: 106 QNDTDTDTDVVDMDISIPDDADEN 129
+ V + + +D EN
Sbjct: 72 ERRRKAIESVNNAPAEVGEDEKEN 95
Score = 26.5 bits (58), Expect = 2.2
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 12/87 (13%)
Query: 49 KEKEICSLEE-ETEVKPFVKHTSEEEEESPISK--------EEDDTSLDMEYVQEMDLDD 99
+ K I S+ EV K +EE+++ I K +DD +L + D +
Sbjct: 74 RRKAIESVNNAPAEVGEDEKENTEEDDQLEIPKRKLKNHESTDDDETLIEKKN---DNES 130
Query: 100 DDDFLEQNDTDTDTDVVDMDISIPDDA 126
+D F D + + + I+
Sbjct: 131 EDPFWSHFDDELGSKHIADLIARTKTT 157
>gnl|CDD|48537 cd02988, Phd_like_VIAF, Phosducin (Phd)-like family, Viral
inhibitor of apoptosis (IAP)-associated factor (VIAF)
subfamily; VIAF is a Phd-like protein that functions in
caspase activation during apoptosis. It was identified
as an IAP binding protein through a screen of a human
B-cell library using a prototype IAP. VIAF lacks a
consensus IAP binding motif and while it does not
function as an IAP antagonist, it still plays a
regulatory role in the complete activation of caspases.
VIAF itself is a substrate for IAP-mediated
ubiquitination, suggesting that it may be a target of
IAPs in the prevention of cell death. The similarity of
VIAF to Phd points to a potential role distinct from
apoptosis regulation. Phd functions as a cytosolic
regulator of G protein by specifically binding to G
protein betagamma (Gbg)-subunits. The C-terminal domain
of Phd adopts a thioredoxin fold, but it does not
contain a CXXC motif. Phd interacts with G protein beta
mostly through the N-terminal helical domain..
Length = 192
Score = 27.9 bits (62), Expect = 0.87
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 10/60 (16%)
Query: 47 PEKEKEICSLEEETEVKPFVKHTSEEEEESPISKEEDDTSLDMEYVQEMDLDDDDDFLEQ 106
P K EEE + E + + L E +E+D ++DD FLE+
Sbjct: 14 PPKPPSPKEEEEE----------ALELAIQEAHENALEKKLLDELDEELDEEEDDRFLEE 63
>gnl|CDD|40009 KOG4812, KOG4812, KOG4812, Golgi-associated protein/Nedd4 WW
domain-binding protein [General function prediction
only].
Length = 262
Score = 27.6 bits (61), Expect = 0.99
Identities = 11/48 (22%), Positives = 20/48 (41%)
Query: 63 KPFVKHTSEEEEESPISKEEDDTSLDMEYVQEMDLDDDDDFLEQNDTD 110
KP +E+P + E + Y +DL++ D ++ D D
Sbjct: 106 KPVATSLPNNLDEAPPTYAEAAADMAPPYYGTIDLENSDGRNDEIDID 153
>gnl|CDD|147488 pfam05327, RRN3, RNA polymerase I specific transcription initiation
factor RRN3. This family consists of several eukaryotic
proteins which are homologous to the yeast RRN3 protein.
RRN3 is one of the RRN genes specifically required for
the transcription of rDNA by RNA polymerase I (Pol I) in
Saccharomyces cerevisiae.
Length = 550
Score = 27.6 bits (62), Expect = 1.1
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 86 SLDMEYVQEMDLDDDD---DFLEQNDTDTDTDVVDMDISIPDDADE 128
LD+E E+D DD+ L D D + ++ +MD DD +E
Sbjct: 213 KLDVEIQNELDDIDDEESEALLADLDDDDEDEMFEMD---DDDEEE 255
Score = 26.1 bits (58), Expect = 2.8
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 81 EEDDTSLDMEYVQEMDLDDDDDFLEQNDTDTDTDVVDMDISIP 123
+ DD + D D+D+ F +D + + V D P
Sbjct: 224 DIDDEESEALLADLDDDDEDEMFEMDDDDEEEVSVSSEDEGDP 266
Score = 25.7 bits (57), Expect = 3.7
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 71 EEEEESPISKEEDDTSLDMEYVQEMDLDDDDDFLEQNDTDTD 112
+EE E+ ++ +DD +M EMD DD+++ ++ + D
Sbjct: 227 DEESEALLADLDDDDEDEMF---EMDDDDEEEVSVSSEDEGD 265
>gnl|CDD|37202 KOG1991, KOG1991, KOG1991, Nuclear transport receptor RANBP7/RANBP8
(importin beta superfamily) [Nuclear structure,
Intracellular trafficking, secretion, and vesicular
transport].
Length = 1010
Score = 27.6 bits (61), Expect = 1.2
Identities = 19/71 (26%), Positives = 28/71 (39%)
Query: 55 SLEEETEVKPFVKHTSEEEEESPISKEEDDTSLDMEYVQEMDLDDDDDFLEQNDTDTDTD 114
SL E + V+ EE E EE+D D + + E D D D++ E D+
Sbjct: 873 SLPEALAERAQVEEEDSEEGEEEDDDEEEDFIDDEDDIDEDDQDYLDEYGELALEKEDSL 932
Query: 115 VVDMDISIPDD 125
D D +
Sbjct: 933 DDDDDFDEDEL 943
>gnl|CDD|36161 KOG0943, KOG0943, KOG0943, Predicted ubiquitin-protein
ligase/hyperplastic discs protein, HECT superfamily
[Posttranslational modification, protein turnover,
chaperones].
Length = 3015
Score = 27.1 bits (59), Expect = 1.6
Identities = 18/51 (35%), Positives = 22/51 (43%)
Query: 69 TSEEEEESPISKEEDDTSLDMEYVQEMDLDDDDDFLEQNDTDTDTDVVDMD 119
T+ + EE + E D D DDDD E +D D D D DMD
Sbjct: 1716 TNADNEEREGQEGEFAGEEDHHDDDNDDDDDDDAEAEDDDDDDDDDDEDMD 1766
>gnl|CDD|37367 KOG2156, KOG2156, KOG2156, Tubulin-tyrosine ligase-related protein
[Posttranslational modification, protein turnover,
chaperones].
Length = 662
Score = 26.5 bits (58), Expect = 2.0
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 12/59 (20%)
Query: 76 SPISKEEDDTSLDMEYVQEMDLDDDDDFLEQNDTDTDTDVVDMD-----ISIPDDADEN 129
+P S D S ++DL+ +DD E +D D +++ D D + D+ +E
Sbjct: 77 APESSAPDHVS-------DIDLNRNDDGAEDDDIDGLSELDDSDSEEVLVDTEDEVEEK 128
>gnl|CDD|146667 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 26.1 bits (58), Expect = 2.6
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 14/73 (19%)
Query: 70 SEEEEESPISKEEDD--------------TSLDMEYVQEMDLDDDDDFLEQNDTDTDTDV 115
EEEE+S S ++ D + E +E +DD+D+ + +D + + +
Sbjct: 289 DEEEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEED 348
Query: 116 VDMDISIPDDADE 128
VD+ D+ +E
Sbjct: 349 VDLSDDEEDEEEE 361
>gnl|CDD|37262 KOG2051, KOG2051, KOG2051, Nonsense-mediated mRNA decay 2 protein
[RNA processing and modification].
Length = 1128
Score = 26.1 bits (57), Expect = 2.9
Identities = 15/80 (18%), Positives = 33/80 (41%)
Query: 48 EKEKEICSLEEETEVKPFVKHTSEEEEESPISKEEDDTSLDMEYVQEMDLDDDDDFLEQN 107
E++ S E+E E + + +E+S + ED+ + + +E D+ E+
Sbjct: 905 VYEEDDGSDEDENEEEEPDTESEPGKEKSDLDDSEDEDIENDDEDEERLDRMIDEGFEEL 964
Query: 108 DTDTDTDVVDMDISIPDDAD 127
D D D + ++ +
Sbjct: 965 TPDVDQDDEALLKAMHEKNP 984
>gnl|CDD|37249 KOG2038, KOG2038, KOG2038, CAATT-binding transcription factor/60S
ribosomal subunit biogenesis protein [Translation,
ribosomal structure and biogenesis, Transcription].
Length = 988
Score = 26.2 bits (57), Expect = 2.9
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 59 ETEVKPFVKHTSEEEEESPISKEEDDTSLD-MEYVQEMDLDDDDDFLEQNDTDTDTDVVD 117
E + K TS+++ ++ +ED+ SL E E D D+D + ++ DT D
Sbjct: 863 EKDDKNKKDMTSDDDVDADEDDDEDENSLGSEEDGGEEDDDEDIGDSDDDEDDTSDAEDD 922
Query: 118 MDISIPDDAD 127
+ D+ D
Sbjct: 923 FEDEDDDEVD 932
>gnl|CDD|36144 KOG0926, KOG0926, KOG0926, DEAH-box RNA helicase [RNA processing
and modification, Translation, ribosomal structure and
biogenesis].
Length = 1172
Score = 25.8 bits (56), Expect = 3.2
Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 9/81 (11%)
Query: 47 PEKEKEICSLEEETEVKPFVKHTSEEEEESPISKEEDDTSLDMEYVQEMDLDDDDDFLEQ 106
PE + E ETE ++ + E+ E D + +D+D +
Sbjct: 144 PEDAIKSSMEEPETE--EEIEIEPPKFGENSEQVEVYDEDSLE-------ISEDEDSSPE 194
Query: 107 NDTDTDTDVVDMDISIPDDAD 127
+ DT D DD D
Sbjct: 195 ENDDTVDPSPLDDEEPSDDED 215
>gnl|CDD|39547 KOG4346, KOG4346, KOG4346, Uncharacterized conserved protein
[Function unknown].
Length = 849
Score = 25.8 bits (56), Expect = 3.2
Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Query: 41 FEAPTSPEKEKEICSLEEETEVKPFVKHTSEEEEESPISKEEDDTSLDMEYVQEMDLDDD 100
F + T + E+ + E T+ E EE + +++ S + ++ LD D
Sbjct: 421 FLSSTVKQSERVRETANEITKDDA----GEEPEETNVQRLQDNKDSAAITSKNDLRLDSD 476
Query: 101 DDFLEQND-TDTDTDVVDMDISI 122
DD D +++D + + +I
Sbjct: 477 DDDFPPYDMSESDKEFKNDEIGE 499
>gnl|CDD|37707 KOG2496, KOG2496, KOG2496, Cdk activating kinase (CAK)/RNA
polymerase II transcription initiation/nucleotide
excision repair factor TFIIH/TFIIK, cyclin H subunit
[Cell cycle control, cell division, chromosome
partitioning, Transcription, Replication, recombination
and repair].
Length = 325
Score = 25.7 bits (56), Expect = 3.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 50 EKEICSLEEETEVKPFVKHTSEEEEESPISKEEDDTSLD 88
+K I LEEE + E EE ++KEE+ + ++
Sbjct: 27 QKAIQMLEEEAHNLDENEVFVLEAEELTLTKEEELSLVN 65
>gnl|CDD|146136 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 25.6 bits (56), Expect = 3.7
Identities = 12/56 (21%), Positives = 26/56 (46%)
Query: 64 PFVKHTSEEEEESPISKEEDDTSLDMEYVQEMDLDDDDDFLEQNDTDTDTDVVDMD 119
P + EEEES +EE++ + E + + + +D+ E+ + +M+
Sbjct: 432 PSMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEME 487
Score = 24.5 bits (53), Expect = 8.8
Identities = 17/83 (20%), Positives = 30/83 (36%)
Query: 32 TQNSWPLAYFEAPTSPEKEKEICSLEEETEVKPFVKHTSEEEEESPISKEEDDTSLDMEY 91
T P + E +E EEE E + E E+E + E D + E
Sbjct: 427 TSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEM 486
Query: 92 VQEMDLDDDDDFLEQNDTDTDTD 114
+ D D + E++ +++
Sbjct: 487 EGSSEGDGDGEEPEEDAERRNSE 509
>gnl|CDD|35385 KOG0163, KOG0163, KOG0163, Myosin class VI heavy chain
[Cytoskeleton].
Length = 1259
Score = 25.4 bits (55), Expect = 4.4
Identities = 17/75 (22%), Positives = 36/75 (48%)
Query: 38 LAYFEAPTSPEKEKEICSLEEETEVKPFVKHTSEEEEESPISKEEDDTSLDMEYVQEMDL 97
LA E +EK EE+ K ++ + EEE ++EE++ L +E +++
Sbjct: 932 LAEAERKRREAEEKRRREEEEKKRAKAEMETKRKAEEEQRKAQEEEERRLALELQEQLAK 991
Query: 98 DDDDDFLEQNDTDTD 112
+ +++ QN + +
Sbjct: 992 EAEEEAKRQNQLEQE 1006
>gnl|CDD|133140 cd05473, beta_secretase_like, Beta-secretase, aspartic-acid
protease important in the pathogenesis of Alzheimer's
disease. Beta-secretase also called BACE (beta-site of
APP cleaving enzyme) or memapsin-2. Beta-secretase is
an aspartic-acid protease important in the pathogenesis
of Alzheimer's disease, and in the formation of myelin
sheaths in peripheral nerve cells. It cleaves amyloid
precursor protein (APP) to reveal the N-terminus of the
beta-amyloid peptides. The beta-amyloid peptides are
the major components of the amyloid plaques formed in
the brain of patients with Alzheimer's disease (AD).
Since BACE mediates one of the cleavages responsible
for generation of AD, it is regarded as a potential
target for pharmacological intervention in AD.
Beta-secretase is a member of pepsin family of aspartic
proteases. Same as other aspartic proteases,
beta-secretase is a bilobal enzyme, each lobe
contributing a catalytic Asp residue, with an extended
active site cleft localized between the two lobes of
the molecule. The N- and C-terminal domains, although
structurally related by a 2-fold axis, have only
limited sequence homology except the vicinity of the
active site. This suggests that the enzymes evolved by
an ancient duplication event. The enzymes specifically
cleave bonds in peptides which have at least six
residues in length with hydrophobic residues in both
the P1 and P1' positions. The active site is located at
the groove formed by the two lobes, with an extended
loop projecting over the cleft to form an 11-residue
flap, which encloses substrates and inhibitors in the
active site. Specificity is determined by
nearest-neighbor hydrophobic residues surrounding the
catalytic aspartates, and by three residues in the
flap. The enzymes are mostly secreted from cells as
inactive proenzymes that activate autocatalytically at
acidic pH. This family of aspartate proteases is
classified by MEROPS as the peptidase family A1 (pepsin
A, clan AA).
Length = 364
Score = 25.5 bits (56), Expect = 4.5
Identities = 11/16 (68%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
Query: 21 DLNKQVIVSPYTQNSW 36
DL K V V PYTQ SW
Sbjct: 52 DLGKGVTV-PYTQGSW 66
>gnl|CDD|36714 KOG1501, KOG1501, KOG1501, Arginine N-methyltransferase [General
function prediction only].
Length = 636
Score = 25.4 bits (55), Expect = 4.5
Identities = 11/60 (18%), Positives = 17/60 (28%), Gaps = 4/60 (6%)
Query: 11 TCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEAPTSPEKEKEICSLEEETEVKPFVKHTS 70
+C I + S F + + I S E E++P V S
Sbjct: 214 SCFGIKSVQDSQLVDAIEKEFKLLSSEGTIF----YSDFPRWIDSNSEIEELRPPVAVHS 269
>gnl|CDD|114083 pfam05340, DUF740, Protein of unknown function (DUF740). This
family consists of several uncharacterized plant
proteins of unknown function.
Length = 565
Score = 25.4 bits (55), Expect = 4.9
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 49 KEKEICSLEEETEVKPFVKHTSEEEEESPISKEEDDTSLDMEYVQEMDLDDDDDFLEQND 108
+ KP V EEEE + EED+ + E + + D+ + E+ +
Sbjct: 118 PSSIAPPEIDPEPRKPIVPDLVLEEEE-EVEMEEDEEYYEKEPGKVV--DEKSEEEEEEE 174
Query: 109 TDTDTDVVDMD 119
T D +D++
Sbjct: 175 LKTMKDFIDLE 185
>gnl|CDD|39369 KOG4167, KOG4167, KOG4167, Predicted DNA-binding protein, contains
SANT and ELM2 domains [Transcription].
Length = 907
Score = 25.1 bits (54), Expect = 5.2
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 45 TSPEKEKEICSLEEETEVKPFVKHTSEEEEESPISKEE 82
S E E+ EEE + + K T EEE E P S EE
Sbjct: 679 RSEELEELE--EEEEEDPEEDRKSTKEEESEVPKSPEE 714
>gnl|CDD|37287 KOG2076, KOG2076, KOG2076, RNA polymerase III transcription factor
TFIIIC [Transcription].
Length = 895
Score = 25.3 bits (55), Expect = 5.3
Identities = 15/63 (23%), Positives = 31/63 (49%)
Query: 41 FEAPTSPEKEKEICSLEEETEVKPFVKHTSEEEEESPISKEEDDTSLDMEYVQEMDLDDD 100
F P++ E+EKE+ + + ++E+ +EEDD ++ E V+ ++ +
Sbjct: 14 FMRPSNMEREKEVLGEKTNLSDENNNDDEIDDEDRDIDDEEEDDEDVESEDVEGVEASEH 73
Query: 101 DDF 103
DF
Sbjct: 74 PDF 76
>gnl|CDD|37792 KOG2581, KOG2581, KOG2581, 26S proteasome regulatory complex,
subunit RPN3/PSMD3 [Posttranslational modification,
protein turnover, chaperones].
Length = 493
Score = 24.9 bits (54), Expect = 5.8
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 64 PFVKHTSEEEEESPISKEEDDTSLDMEYVQEMDLDDDDDF 103
P K E E K + ++E +EM +DDDDF
Sbjct: 458 PPKKKKDLESAE----KRREREQQELELAKEMAEEDDDDF 493
>gnl|CDD|36134 KOG0916, KOG0916, KOG0916, 1,3-beta-glucan synthase/callose
synthase catalytic subunit [Cell wall/membrane/envelope
biogenesis].
Length = 1679
Score = 24.9 bits (54), Expect = 6.0
Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 65 FVKHTSEE--EEESPISKEEDDTSLDMEYVQEMDLDDDDDFLEQNDTDTDTDVVDMD 119
+ SE+ + +E +D + Y+Q++ D+ +FLE+ + + D+
Sbjct: 838 LTPYYSEKVLYSLRELIRENEDGVSILFYLQKIYPDEWKNFLERTKCLAEEKIDDLP 894
>gnl|CDD|32597 COG2605, COG2605, Predicted kinase related to galactokinase and
mevalonate kinase [General function prediction only].
Length = 333
Score = 24.9 bits (54), Expect = 6.2
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 23 NKQVIVSPYTQNSWPLAYFEA 43
N +V+V+P N A EA
Sbjct: 168 NGEVVVNPLRINRERTAELEA 188
>gnl|CDD|113695 pfam04931, DNA_pol_phi, DNA polymerase phi. This family includes
the fifth essential DNA polymerase in yeast EC:2.7.7.7.
Pol5p is localized exclusively to the nucleolus and
binds near or at the enhancer region of rRNA-encoding
DNA repeating units.
Length = 784
Score = 24.8 bits (54), Expect = 6.6
Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 38 LAYFEAPTSPEKEKEICSLEEETEVKPFVKHTSEEEEESPISKEEDDTSLDMEYVQEMDL 97
L +A + + +++ EEE E E+E E+ I E ++ +
Sbjct: 629 LDVLKADENKSRHQQLFEGEEEDEDDLEETDDDEDECEA-IEDSESES-------ESDGE 680
Query: 98 DDDDDFLEQNDTDTDTDVVDMDISI 122
D ++D E + + VV +D ++
Sbjct: 681 DGEEDEQEDDAEA-NEGVVPIDKAV 704
>gnl|CDD|38804 KOG3598, KOG3598, KOG3598, Thyroid hormone receptor-associated
protein complex, subunit TRAP230 [Transcription].
Length = 2220
Score = 24.7 bits (53), Expect = 7.9
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 37 PLAYFEAP--TSPEKEKEICSLEEETEVKPFVKHTSEEEEESPISKEED 83
P Y+ AP PE E+E EEE E + + E+E + E+
Sbjct: 1770 PRDYYLAPLPLPPEDEEEAKKAEEEKEAAEKEEESKNAEDEKNKNTAEN 1818
>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 3.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase
3 (MEKK3) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The MEKK3 subfamily is part of a larger
superfamily that includes the catalytic domains of
other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MEKK3 is a
mitogen-activated protein kinase (MAPK) kinase kinase
(MAPKKK or MKKK or MAP3K), that phosphorylates and
activates the MAPK kinase MEK5 (or MKK5), which in turn
phosphorylates and activates extracellular
signal-regulated kinase 5 (ERK5). The ERK5 cascade
plays roles in promoting cell proliferation,
differentiation, neuronal survival, and
neuroprotection. MEKK3 plays an essential role in
embryonic angiogenesis and early heart development. In
addition, MEKK3 is involved in interleukin-1 receptor
and Toll-like receptor 4 signaling. It is also a
specific regulator of the proinflammatory cytokines
IL-6 and GM-CSF in some immune cells. MEKK3 also
regulates calcineurin, which plays a critical role in T
cell activation, apoptosis, skeletal myocyte
differentiation, and cardiac hypertrophy.
Length = 266
Score = 24.6 bits (53), Expect = 7.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 44 PTSPEKEKEICSLEEETEVKPFVKH 68
P SPE KE+ +LE E ++ ++H
Sbjct: 39 PESPETSKEVSALECEIQLLKNLQH 63
>gnl|CDD|35689 KOG0468, KOG0468, KOG0468, U5 snRNP-specific protein [Translation,
ribosomal structure and biogenesis].
Length = 971
Score = 24.6 bits (53), Expect = 8.5
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 79 SKEEDDTSLDMEYVQEMDLDDDDDFLEQNDTD 110
S EE+D S++ E +QE+D DD+D+ ++ D
Sbjct: 19 SDEEEDDSVEDEDLQEVDQDDEDEMEGDHNED 50
>gnl|CDD|38826 KOG3620, KOG3620, KOG3620, Uncharacterized conserved protein
[Function unknown].
Length = 1626
Score = 24.3 bits (52), Expect = 9.5
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 30 PYTQNSWPLAYFEAPTSPEKEKEICSLEEETEVKPFVKHTSEEEEE-SPISK 80
P NS PLA + + + + V V+ E++ + SP
Sbjct: 1131 PRQANSAPLAAPPVELPEAEPVKKSATPKPQGVPSSVQTRPEKKVKPSPAKV 1182
>gnl|CDD|177007 CHL00067, rps2, ribosomal protein S2.
Length = 230
Score = 24.4 bits (54), Expect = 9.5
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 4/21 (19%)
Query: 108 DTDTDTDVVDMDISIP--DDA 126
DT+ D D+ DI IP DDA
Sbjct: 192 DTNCDPDLA--DIPIPANDDA 210
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.305 0.128 0.361
Gapped
Lambda K H
0.267 0.0574 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,619,426
Number of extensions: 78955
Number of successful extensions: 530
Number of sequences better than 10.0: 1
Number of HSP's gapped: 464
Number of HSP's successfully gapped: 187
Length of query: 129
Length of database: 6,263,737
Length adjustment: 83
Effective length of query: 46
Effective length of database: 4,470,190
Effective search space: 205628740
Effective search space used: 205628740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 52 (24.2 bits)