RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780459|ref|YP_003064872.1| hypothetical protein
CLIBASIA_01720 [Candidatus Liberibacter asiaticus str. psy62]
         (129 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 38.8 bits (90), Expect = 3e-04
 Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 31/103 (30%)

Query: 35  SWPLA---YFEAPTSPEKEKEICSLEEETEVKPFVKHTSEEEEESPI-----------SK 80
              +    +F A  S  +E+    L E TE        +++E  +P            S 
Sbjct: 19  VLLVPTASFFIA--SQLQEQFNKILPEPTEGF-----AADDEPTTPAELVGKFLGYVSSL 71

Query: 81  EEDDTSLDMEYVQEMDLDD-DDDFLEQND---------TDTDT 113
            E       + V  + L + ++ +LE ND          + DT
Sbjct: 72  VEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT 114


>2dyt_A Autophagy-related protein 3; E2 fold, ligase; 2.50A {Saccharomyces
           cerevisiae}
          Length = 312

 Score = 28.4 bits (63), Expect = 0.52
 Identities = 10/82 (12%), Positives = 30/82 (36%)

Query: 40  YFEAPTSPEKEKEICSLEEETEVKPFVKHTSEEEEESPISKEEDDTSLDMEYVQEMDLDD 99
             E        K      +E +V  ++   +E  + +P    +D +  D++ + +     
Sbjct: 85  CVEVEGPDVIMKGFAEDGDEDDVLEYIGSETEHVQSTPAGGTKDSSIDDIDELIQDMEIK 144

Query: 100 DDDFLEQNDTDTDTDVVDMDIS 121
           ++D  +  +       +  D++
Sbjct: 145 EEDENDDTEEFNAKGGLAKDMA 166



 Score = 28.0 bits (62), Expect = 0.58
 Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 1/74 (1%)

Query: 57  EEETEVKPFVKHTSEEE-EESPISKEEDDTSLDMEYVQEMDLDDDDDFLEQNDTDTDTDV 115
             +  +K F +   E++  E   S+ E   S      ++  +DD D+ ++  +   + + 
Sbjct: 90  GPDVIMKGFAEDGDEDDVLEYIGSETEHVQSTPAGGTKDSSIDDIDELIQDMEIKEEDEN 149

Query: 116 VDMDISIPDDADEN 129
            D +          
Sbjct: 150 DDTEEFNAKGGLAK 163


>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
          transcription factor, DNA-binding, DNA-directed RNA
          polymerase; 4.30A {Saccharomyces cerevisiae}
          Length = 197

 Score = 24.9 bits (54), Expect = 5.4
 Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 5/31 (16%)

Query: 3  KPELGTKRTCPDTGKRFYDLNKQVIVSPYTQ 33
           P L    TCP+            IV  +++
Sbjct: 15 GPNLNIVLTCPECKV-----YPPKIVERFSE 40


>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
           twinning, leucine-rich repeat protein, LRR, merohedral
           twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
           c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
          Length = 386

 Score = 24.8 bits (52), Expect = 5.8
 Identities = 10/60 (16%), Positives = 22/60 (36%)

Query: 42  EAPTSPEKEKEICSLEEETEVKPFVKHTSEEEEESPISKEEDDTSLDMEYVQEMDLDDDD 101
           E     ++ +E+ S     E+          +EE    +EE ++        E + +D +
Sbjct: 317 EEDDVVDEIREVFSTRGRGELDELDDMEELTDEEEEDEEEEAESQSPEPETSEEEKEDKE 376


>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold,
           C2 domain fold, acute phase, blood coagulation, calcium,
           disease mutation; HET: NAG BMA MAN; 3.70A {Homo sapiens}
           PDB: 3cdz_B*
          Length = 770

 Score = 24.2 bits (52), Expect = 8.1
 Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 4/69 (5%)

Query: 42  EAPTSPEKEKEICSLEEETEVKPFVKHTSEEEEESPISKEEDDTSLDMEYVQEMDLDDDD 101
           E   + +   E    +      P +K    E   + +  ++++   D     EM  +D D
Sbjct: 61  EVTWAKQGRTERLCSQNP----PVLKRHQREITRTTLQSDQEEIDYDDTISVEMKKEDFD 116

Query: 102 DFLEQNDTD 110
            + E  +  
Sbjct: 117 IYDEDENQS 125


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
           acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 1688

 Score = 24.0 bits (51), Expect = 9.2
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 2/29 (6%)

Query: 46  SPEKEKEICSLEEETEVKPF--VKHTSEE 72
           +PEK++ I  +  E +++PF   K T+E+
Sbjct: 916 NPEKKEMIQEVIVEEDLEPFEASKETAEQ 944


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.305    0.128    0.361 

Gapped
Lambda     K      H
   0.267   0.0537    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,141,108
Number of extensions: 49801
Number of successful extensions: 154
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 54
Length of query: 129
Length of database: 5,693,230
Length adjustment: 82
Effective length of query: 47
Effective length of database: 3,705,222
Effective search space: 174145434
Effective search space used: 174145434
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 51 (23.9 bits)