RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780459|ref|YP_003064872.1| hypothetical protein CLIBASIA_01720 [Candidatus Liberibacter asiaticus str. psy62] (129 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 38.8 bits (90), Expect = 3e-04 Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 31/103 (30%) Query: 35 SWPLA---YFEAPTSPEKEKEICSLEEETEVKPFVKHTSEEEEESPI-----------SK 80 + +F A S +E+ L E TE +++E +P S Sbjct: 19 VLLVPTASFFIA--SQLQEQFNKILPEPTEGF-----AADDEPTTPAELVGKFLGYVSSL 71 Query: 81 EEDDTSLDMEYVQEMDLDD-DDDFLEQND---------TDTDT 113 E + V + L + ++ +LE ND + DT Sbjct: 72 VEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT 114 >2dyt_A Autophagy-related protein 3; E2 fold, ligase; 2.50A {Saccharomyces cerevisiae} Length = 312 Score = 28.4 bits (63), Expect = 0.52 Identities = 10/82 (12%), Positives = 30/82 (36%) Query: 40 YFEAPTSPEKEKEICSLEEETEVKPFVKHTSEEEEESPISKEEDDTSLDMEYVQEMDLDD 99 E K +E +V ++ +E + +P +D + D++ + + Sbjct: 85 CVEVEGPDVIMKGFAEDGDEDDVLEYIGSETEHVQSTPAGGTKDSSIDDIDELIQDMEIK 144 Query: 100 DDDFLEQNDTDTDTDVVDMDIS 121 ++D + + + D++ Sbjct: 145 EEDENDDTEEFNAKGGLAKDMA 166 Score = 28.0 bits (62), Expect = 0.58 Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 1/74 (1%) Query: 57 EEETEVKPFVKHTSEEE-EESPISKEEDDTSLDMEYVQEMDLDDDDDFLEQNDTDTDTDV 115 + +K F + E++ E S+ E S ++ +DD D+ ++ + + + Sbjct: 90 GPDVIMKGFAEDGDEDDVLEYIGSETEHVQSTPAGGTKDSSIDDIDELIQDMEIKEEDEN 149 Query: 116 VDMDISIPDDADEN 129 D + Sbjct: 150 DDTEEFNAKGGLAK 163 >3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197 Score = 24.9 bits (54), Expect = 5.4 Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 5/31 (16%) Query: 3 KPELGTKRTCPDTGKRFYDLNKQVIVSPYTQ 33 P L TCP+ IV +++ Sbjct: 15 GPNLNIVLTCPECKV-----YPPKIVERFSE 40 >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 Score = 24.8 bits (52), Expect = 5.8 Identities = 10/60 (16%), Positives = 22/60 (36%) Query: 42 EAPTSPEKEKEICSLEEETEVKPFVKHTSEEEEESPISKEEDDTSLDMEYVQEMDLDDDD 101 E ++ +E+ S E+ +EE +EE ++ E + +D + Sbjct: 317 EEDDVVDEIREVFSTRGRGELDELDDMEELTDEEEEDEEEEAESQSPEPETSEEEKEDKE 376 >2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, acute phase, blood coagulation, calcium, disease mutation; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B* Length = 770 Score = 24.2 bits (52), Expect = 8.1 Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 4/69 (5%) Query: 42 EAPTSPEKEKEICSLEEETEVKPFVKHTSEEEEESPISKEEDDTSLDMEYVQEMDLDDDD 101 E + + E + P +K E + + ++++ D EM +D D Sbjct: 61 EVTWAKQGRTERLCSQNP----PVLKRHQREITRTTLQSDQEEIDYDDTISVEMKKEDFD 116 Query: 102 DFLEQNDTD 110 + E + Sbjct: 117 IYDEDENQS 125 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 24.0 bits (51), Expect = 9.2 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 2/29 (6%) Query: 46 SPEKEKEICSLEEETEVKPF--VKHTSEE 72 +PEK++ I + E +++PF K T+E+ Sbjct: 916 NPEKKEMIQEVIVEEDLEPFEASKETAEQ 944 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.305 0.128 0.361 Gapped Lambda K H 0.267 0.0537 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,141,108 Number of extensions: 49801 Number of successful extensions: 154 Number of sequences better than 10.0: 1 Number of HSP's gapped: 144 Number of HSP's successfully gapped: 54 Length of query: 129 Length of database: 5,693,230 Length adjustment: 82 Effective length of query: 47 Effective length of database: 3,705,222 Effective search space: 174145434 Effective search space used: 174145434 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 43 (21.9 bits) S2: 51 (23.9 bits)