HHsearch alignment for GI: 254780460 and conserved domain: cd03443
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=90.64 E-value=1.4 Score=23.75 Aligned_cols=97 Identities=13% Similarity=0.096 Sum_probs=54.9
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCC-CCCEEEEEECCCEEEEEECCCCCEEEEEEEE
Q ss_conf 357887507865530045568995211275788879988640123346-8826676304511410233798579999998
Q gi|254780460|r 53 GVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGE-LGKGRAVSVSNIKFRGMVTPDCKLVEYGIDF 131 (172)
Q Consensus 53 G~i~aek~i~~d~wff~gHFp~~PvmPGvL~iEa~~Ql~~~~~~~~~~-~~~~~~~~~~~vkfr~~V~Pgd~~i~~~i~i 131 (172)
T Consensus 12 g~~~~~~~~~~--~~~n---~-~g~~HGG~-~~~l~D~~~g~~~~~~~~~~~~~vt~~l~i~fl~p~~~~--~l~~~a~- 81 (113)
T cd03443 12 GRVVLRLPVRP--RHLN---P-GGIVHGGA-IATLADTAGGLAALSALPPGALAVTVDLNVNYLRPARGG--DLTARAR- 81 (113)
T ss_pred CEEEEEEECCH--HHCC---C-CCCEEHHH-HHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCC--EEEEEEE-
T ss_conf 99999999898--9959---9-99480788-778887889999985156650207621579997578997--6999999-
Q ss_pred EEEECCCCEEEEEEEEEEEC-CEEEEEEEEE
Q ss_conf 89630785799999999999-9999999710
Q gi|254780460|r 132 KKILRGRVVLGAADGWVKVN-GKEIYQANDL 161 (172)
Q Consensus 132 k~v~~~~~~~~~~~g~~~vd-g~~i~~a~~l 161 (172)
T Consensus 82 --v~~~g~~~~~~~~~i~~~~g~~~A~~~~~ 110 (113)
T cd03443 82 --VVKLGRRLAVVEVEVTDEDGKLVATARGT 110 (113)
T ss_pred --EEEECCCEEEEEEEEEECCCCEEEEEEEE
T ss_conf --99958889999999995999999999999