HHsearch alignment for GI: 254780460 and conserved domain: cd03443

>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=90.64  E-value=1.4  Score=23.75  Aligned_cols=97  Identities=13%  Similarity=0.096  Sum_probs=54.9

Q ss_pred             EEEEEEEECCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCC-CCCEEEEEECCCEEEEEECCCCCEEEEEEEE
Q ss_conf             357887507865530045568995211275788879988640123346-8826676304511410233798579999998
Q gi|254780460|r   53 GVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGE-LGKGRAVSVSNIKFRGMVTPDCKLVEYGIDF  131 (172)
Q Consensus        53 G~i~aek~i~~d~wff~gHFp~~PvmPGvL~iEa~~Ql~~~~~~~~~~-~~~~~~~~~~~vkfr~~V~Pgd~~i~~~i~i  131 (172)
T Consensus        12 g~~~~~~~~~~--~~~n---~-~g~~HGG~-~~~l~D~~~g~~~~~~~~~~~~~vt~~l~i~fl~p~~~~--~l~~~a~-   81 (113)
T cd03443          12 GRVVLRLPVRP--RHLN---P-GGIVHGGA-IATLADTAGGLAALSALPPGALAVTVDLNVNYLRPARGG--DLTARAR-   81 (113)
T ss_pred             CEEEEEEECCH--HHCC---C-CCCEEHHH-HHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCC--EEEEEEE-
T ss_conf             99999999898--9959---9-99480788-778887889999985156650207621579997578997--6999999-


Q ss_pred             EEEECCCCEEEEEEEEEEEC-CEEEEEEEEE
Q ss_conf             89630785799999999999-9999999710
Q gi|254780460|r  132 KKILRGRVVLGAADGWVKVN-GKEIYQANDL  161 (172)
Q Consensus       132 k~v~~~~~~~~~~~g~~~vd-g~~i~~a~~l  161 (172)
T Consensus        82 --v~~~g~~~~~~~~~i~~~~g~~~A~~~~~  110 (113)
T cd03443          82 --VVKLGRRLAVVEVEVTDEDGKLVATARGT  110 (113)
T ss_pred             --EEEECCCEEEEEEEEEECCCCEEEEEEEE
T ss_conf             --99958889999999995999999999999