HHsearch alignment for GI: 254780460 and conserved domain: cd03454
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=97.18 E-value=0.0048 Score=38.42 Aligned_cols=92 Identities=8% Similarity=-0.040 Sum_probs=55.3
Q ss_pred CCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEEEEEEC---C-CCEEE
Q ss_conf 0045568995211275788879988640123346882667630451141023379857999999889630---7-85799
Q gi|254780460|r 67 FFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILR---G-RVVLG 142 (172)
Q Consensus 67 ff~gHFp~~PvmPGvL~iEa~~Ql~~~~~~~~~~~~~~~~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~---~-~~~~~ 142 (172)
T Consensus 40 ~A~~s~fg~~ia~G~~t~-~l~~~l~~~-~~~~~~~~~a~~g~~~~rf~~PV~~GD-Ti~~~~eV~~~~~~~sr~~~GiV 116 (140)
T cd03454 40 AAKESLFGGLAASGWHTA-AITMRLLVD-AGLSGSASGGSPGIDELRWPRPVRPGD-TLSVEVEVLDKRPSRSRPDRGIV 116 (140)
T ss_pred HHHHCCCCCEEECCCHHH-HHHHHHEEH-HCCCCCCEEEECCCCEEEECCCCCCCC-EEEEEEEEEEEEECCCCCCCEEE
T ss_conf 995488985441230578-888665501-024556301242521258837876899-99999999993645778983699
Q ss_pred EEEEEEEE-CCEEEEEEEEE
Q ss_conf 99999999-99999999710
Q gi|254780460|r 143 AADGWVKV-NGKEIYQANDL 161 (172)
Q Consensus 143 ~~~g~~~v-dg~~i~~a~~l 161 (172)
T Consensus 117 ~~~~~~~NQ~ge~V~~~~~~ 136 (140)
T cd03454 117 TLRSETLNQRGEVVLTFEAT 136 (140)
T ss_pred EEEEEEEECCCCEEEEEEEE
T ss_conf 99999992899999998981