Query gi|254780460|ref|YP_003064873.1| 3-hydroxydecanoyl-(acyl carrier protein) dehydratase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 172
No_of_seqs 131 out of 1572
Neff 6.8
Searched_HMMs 39220
Date Sun May 29 16:46:43 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780460.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05174 3-hydroxydecanoyl-(ac 100.0 0 0 399.8 19.5 170 1-170 1-170 (172)
2 cd01287 FabA FabA, beta-hydrox 100.0 0 0 315.3 17.4 142 27-168 1-150 (150)
3 TIGR01749 fabA beta-hydroxyacy 100.0 0 0 293.1 10.9 168 4-171 1-168 (169)
4 TIGR01750 fabZ beta-hydroxyacy 100.0 9.8E-45 0 286.0 14.7 135 8-163 1-141 (142)
5 pfam07977 FabA FabA-like domai 100.0 1.1E-43 0 280.0 15.6 130 29-159 1-133 (133)
6 PRK13188 bifunctional UDP-3-O- 100.0 2.5E-40 7E-45 260.0 18.0 146 3-170 316-465 (465)
7 PRK00006 fabZ (3R)-hydroxymyri 100.0 7E-38 1.8E-42 245.4 17.9 140 4-166 3-147 (149)
8 COG0764 FabA 3-hydroxymyristoy 100.0 8.8E-38 2.2E-42 244.8 16.8 144 5-168 1-147 (147)
9 cd01288 FabZ FabZ is a 17kD be 100.0 3.4E-35 8.6E-40 229.4 16.2 124 29-162 1-128 (131)
10 cd00493 FabA_FabZ FabA/Z, beta 100.0 6.3E-33 1.6E-37 216.0 16.0 124 30-164 2-130 (131)
11 cd01289 FabA_like Domain of un 99.6 8.2E-14 2.1E-18 102.4 12.8 123 28-163 6-134 (138)
12 COG4706 Predicted 3-hydroxylac 98.7 2E-08 5E-13 70.4 4.7 115 27-154 14-136 (161)
13 cd03452 MaoC_C MaoC_C The C-t 97.8 0.0004 1E-08 44.8 10.5 98 59-161 34-135 (142)
14 cd03446 MaoC_like MoaC_like 97.5 0.0019 4.7E-08 40.9 9.7 96 61-160 36-136 (140)
15 cd03449 R_hydratase (R)-hydrat 97.3 0.0045 1.2E-07 38.5 9.9 90 64-160 34-124 (128)
16 cd03454 YdeM YdeM is a Bacillu 97.2 0.0048 1.2E-07 38.4 9.2 92 67-161 40-136 (140)
17 cd03451 FkbR2 FkbR2 is a Strep 97.2 0.0055 1.4E-07 38.0 9.5 99 61-165 39-142 (146)
18 cd03440 hot_dog The hotdog fol 97.1 0.014 3.7E-07 35.6 11.2 93 57-159 3-96 (100)
19 cd03447 FAS_MaoC FAS_MaoC, the 97.0 0.017 4.3E-07 35.1 10.3 95 60-160 27-121 (126)
20 PRK08190 bifunctional enoyl-Co 96.8 0.029 7.5E-07 33.7 10.6 92 62-160 45-137 (465)
21 PRK11563 bifunctional aldehyde 96.7 0.024 6E-07 34.3 9.1 56 105-161 612-671 (676)
22 cd03453 SAV4209_like SAV4209_l 96.5 0.057 1.4E-06 32.0 10.5 92 61-160 30-124 (127)
23 cd03441 R_hydratase_like (R)-h 96.5 0.06 1.5E-06 31.9 10.3 91 64-159 31-123 (127)
24 pfam01575 MaoC_dehydratas MaoC 96.4 0.04 1E-06 32.9 9.2 82 61-148 36-117 (123)
25 cd03450 NodN NodN (nodulation 95.9 0.15 3.7E-06 29.6 9.7 90 74-165 55-148 (149)
26 PRK13693 (3R)-hydroxyacyl-ACP 94.9 0.31 8E-06 27.6 11.1 100 59-165 38-141 (142)
27 COG2030 MaoC Acyl dehydratase 94.9 0.31 8E-06 27.6 10.3 97 59-160 50-150 (159)
28 cd03448 HDE_HSD HDE_HSD The R 94.7 0.35 8.9E-06 27.3 8.7 89 60-159 29-117 (122)
29 PRK04424 fatty acid biosynthes 94.6 0.38 9.6E-06 27.1 13.6 113 34-166 71-183 (185)
30 PRK13691 (3R)-hydroxyacyl-ACP 92.6 0.86 2.2E-05 25.0 9.8 65 106-171 85-151 (166)
31 PRK13692 (3R)-hydroxyacyl-ACP 91.0 1.3 3.3E-05 24.0 10.4 59 106-165 85-145 (159)
32 cd03443 PaaI_thioesterase PaaI 90.6 1.4 3.6E-05 23.8 12.4 97 53-161 12-110 (113)
33 cd03455 SAV4209 SAV4209 is a S 89.8 1.6 4.2E-05 23.4 10.1 92 59-159 27-119 (123)
34 TIGR02278 PaaN-DH phenylacetic 88.2 1.6 4.1E-05 23.4 5.7 113 6-160 560-684 (690)
35 pfam03061 4HBT Thioesterase su 88.2 2.1 5.4E-05 22.7 8.8 73 79-155 5-77 (79)
36 COG0824 FcbC Predicted thioest 76.9 6.2 0.00016 19.9 10.4 63 103-169 55-117 (137)
37 pfam03756 AfsA A-factor biosyn 75.2 5.1 0.00013 20.4 4.2 39 54-94 21-59 (74)
38 TIGR02441 fa_ox_alpha_mit fatt 64.2 3.2 8.3E-05 21.6 1.2 19 21-39 682-700 (740)
39 KOG3328 consensus 58.0 15 0.00039 17.6 9.3 100 52-162 36-137 (148)
40 TIGR00631 uvrb excinuclease AB 57.5 4.6 0.00012 20.7 1.0 35 3-39 285-326 (667)
41 COG2050 PaaI HGG motif-contain 48.2 22 0.00057 16.6 14.0 104 39-161 27-133 (141)
42 TIGR00979 fumC_II fumarate hyd 48.2 11 0.00028 18.5 1.7 29 57-92 305-336 (459)
43 smart00826 PKS_DH PKS_DH. 48.2 22 0.00057 16.6 7.1 70 55-131 16-88 (167)
44 cd00586 4HBT 4-hydroxybenzoyl- 47.1 23 0.00059 16.5 10.1 100 60-165 6-109 (110)
45 pfam05179 CDC73 RNA pol II acc 42.7 15 0.00039 17.6 1.8 57 33-101 176-232 (273)
46 pfam06587 DUF1137 Protein of u 40.1 13 0.00034 17.9 1.1 35 29-78 43-77 (159)
47 TIGR02918 TIGR02918 conserved 37.5 31 0.00078 15.8 2.6 45 8-58 198-252 (511)
48 PRK10800 acyl-CoA thioester hy 34.8 37 0.00093 15.3 10.1 62 102-167 51-113 (130)
49 cd03442 BFIT_BACH Brown fat-in 31.0 42 0.0011 15.0 9.8 57 76-134 23-79 (123)
50 COG1607 Acyl-CoA hydrolase [Li 29.6 45 0.0011 14.8 7.8 59 91-153 43-101 (157)
51 KOG1206 consensus 29.2 21 0.00053 16.8 0.6 16 109-124 218-233 (272)
52 COG5496 Predicted thioesterase 28.8 46 0.0012 14.7 8.8 72 84-163 41-112 (130)
53 COG1946 TesB Acyl-CoA thioeste 25.2 53 0.0014 14.4 7.7 57 105-165 225-283 (289)
54 PRK13325 bifunctional biotin-- 25.2 35 0.00089 15.5 1.2 23 68-90 467-490 (592)
55 cd00607 RNase_Sa RNase_Sa. Rib 23.4 58 0.0015 14.1 3.3 52 19-70 33-85 (95)
56 TIGR03404 bicupin_oxalic bicup 23.2 59 0.0015 14.1 2.2 33 38-83 98-131 (367)
57 TIGR00107 deoD purine nucleosi 21.8 49 0.0013 14.6 1.4 34 28-77 14-54 (234)
58 COG0114 FumC Fumarase [Energy 20.7 64 0.0016 13.9 1.9 32 57-95 306-340 (462)
59 TIGR02480 fliN flagellar motor 20.7 66 0.0017 13.8 2.5 14 146-159 45-58 (77)
60 PRK11688 hypothetical protein; 20.1 68 0.0017 13.7 11.1 46 110-160 103-149 (154)
No 1
>PRK05174 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; Validated
Probab=100.00 E-value=0 Score=399.80 Aligned_cols=170 Identities=60% Similarity=1.147 Sum_probs=166.7
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEH
Q ss_conf 98886558988999841883557998889986412256899997184413423578875078655300455689952112
Q gi|254780460|r 1 MKNRKSSYTYEEILRCGEGEMFGEGNAQLPKPPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPG 80 (172)
Q Consensus 1 ~~~~~~~f~~~~i~~~~~g~~fg~~~~rLP~~p~lmiDrV~~i~~~~g~~g~G~i~aek~i~~d~wff~gHFp~~PvmPG 80 (172)
|+++|+|||+||+++|++|++|||+++|||.|||||+|||++|+++||++|+|+++||++|+||+|||+|||++||||||
T Consensus 1 ~~~~~~s~~~~el~~~~~g~lfg~~n~~Lp~~~mlM~DRI~~i~~~GG~~g~G~i~ae~dI~Pd~WFF~cHF~~DPVMPG 80 (172)
T PRK05174 1 MMTKQSSYSKEDLLACGRGELFGPGNAQLPAPPMLMMDRITEISETGGEFGKGYIVAELDINPDLWFFGCHFIGDPVMPG 80 (172)
T ss_pred CCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCEEEEEEEECHHHCEECCCCCCCCCCCC
T ss_conf 97556878999999615885548999889997607488671681689834573189998508133247256798983776
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCEEEEEEEE
Q ss_conf 75788879988640123346882667630451141023379857999999889630785799999999999999999971
Q gi|254780460|r 81 CLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQAND 160 (172)
Q Consensus 81 vL~iEa~~Ql~~~~~~~~~~~~~~~~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~~~~~~~~~~g~~~vdg~~i~~a~~ 160 (172)
||++|||+|++++|+.+.+....++++++.+|||||||+|.+++++|+++||++.+++.++++|||.++|||++||+|+|
T Consensus 81 sLGlea~~Qll~f~l~w~g~~g~gralg~~evKfrGQV~P~~k~v~y~i~ik~v~~~~~~~~iADg~l~vDg~~IY~a~d 160 (172)
T PRK05174 81 CLGLDAMWQLVGFYLGWLGGPGKGRALGVGEVKFTGQVLPTAKKVTYEIDIKRVIRRKLVMGIADGRVLVDGEEIYTAKD 160 (172)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCEECCCCCEEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCEEEEEEEC
T ss_conf 22467899999889876269886332226830880437338977999999999860882699998999989989999948
Q ss_pred EEEEEECCCC
Q ss_conf 0699861768
Q gi|254780460|r 161 LRVCLTIDRG 170 (172)
Q Consensus 161 l~vgl~~de~ 170 (172)
++||||++..
T Consensus 161 l~VgLf~~~~ 170 (172)
T PRK05174 161 LKVGLFKDTS 170 (172)
T ss_pred CEEEEECCCC
T ss_conf 7999751677
No 2
>cd01287 FabA FabA, beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase: Bacterial protein of the type II, fatty acid synthase system that binds ACP and catalyzes both dehydration and isomerization reactions, apparently in the same active site. The FabA structure is a homodimer with two independent active sites located at the dimer interface. Each active site is tunnel-shaped and completely inaccessible to solvent. No metal ions or cofactors are required for ligand binding or catalysis.
Probab=100.00 E-value=0 Score=315.34 Aligned_cols=142 Identities=43% Similarity=0.747 Sum_probs=131.5
Q ss_pred CCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCC------
Q ss_conf 88998641225689999718441342357887507865530045568995211275788879988640123346------
Q gi|254780460|r 27 AQLPKPPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGE------ 100 (172)
Q Consensus 27 ~rLP~~p~lmiDrV~~i~~~~g~~g~G~i~aek~i~~d~wff~gHFp~~PvmPGvL~iEa~~Ql~~~~~~~~~~------ 100 (172)
.|||.+||||||||++++++||++++|+++|||+|++|+|||+|||++||||||||++|||+|++++|+++.+.
T Consensus 1 ~rLp~~~~lm~Drv~~i~~~GG~~~~G~i~ae~~i~~~~wff~~HF~~dpvmPG~L~~ea~~Q~l~~yl~~~G~~~~~~~ 80 (150)
T cd01287 1 PRLPGGQLLMLDRVTEIDPGGGTFGLGYLRAEKDIDPDDWFFPCHFHGDPVMPGSLGLEAMIQLLQFYLIWLGLGTGVDN 80 (150)
T ss_pred CCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 97789977656999999179985454099999915878571147899899145536999999999999986776544568
Q ss_pred -CCCEEEEEECCCEEEEEECCCCCEEEEEEEEEEEEC-CCCEEEEEEEEEEECCEEEEEEEEEEEEEECC
Q ss_conf -882667630451141023379857999999889630-78579999999999999999997106998617
Q gi|254780460|r 101 -LGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILR-GRVVLGAADGWVKVNGKEIYQANDLRVCLTID 168 (172)
Q Consensus 101 -~~~~~~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~-~~~~~~~~~g~~~vdg~~i~~a~~l~vgl~~d 168 (172)
...++.....+|||||||+|++++++|+++|+++.. .+.++++|||.++|||++||+|+|+++++++.
T Consensus 81 ~~f~~~~~~~~~~kfRGQV~P~~k~v~yev~I~~v~~~~~~~~~iADg~l~vDGk~Iy~~~~l~v~l~~~ 150 (150)
T cd01287 81 PRFQGAPGGPGEWKYRGQITPHNKKVTYEVHIKEVGRDGPRPYIIADASLWVDGLRIYEAKDIAVRLVEA 150 (150)
T ss_pred CCCEEECCCEEEEEEEEEECCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEECCEEEEEECCCEEEEEEC
T ss_conf 7742033850279997886679938999999999980499589999999998998999980889998729
No 3
>TIGR01749 fabA beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA; InterPro: IPR010083 This enzyme, FabA, shows overlapping substrate specificity with FabZ with regard to chain length in fatty acid biosynthesis. It is commonly designated 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase as if it were specific for that chain length, but its specificity is broader; it is active even in the initiation of fatty acid biosynthesis. This enzyme can also isomerise trans-2-decenoyl-ACP to cis-3-decenoyl-ACP to bypass reduction by FabI and instead allow biosynthesis of unsaturated fatty acids. FabA cannot elongate unsaturated fatty acids.; GO: 0008693 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase activity, 0006633 fatty acid biosynthetic process, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=293.12 Aligned_cols=168 Identities=62% Similarity=1.174 Sum_probs=164.0
Q ss_pred CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEHHHH
Q ss_conf 86558988999841883557998889986412256899997184413423578875078655300455689952112757
Q gi|254780460|r 4 RKSSYTYEEILRCGEGEMFGEGNAQLPKPPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLG 83 (172)
Q Consensus 4 ~~~~f~~~~i~~~~~g~~fg~~~~rLP~~p~lmiDrV~~i~~~~g~~g~G~i~aek~i~~d~wff~gHFp~~PvmPGvL~ 83 (172)
++++|++|+++++++|++|||..++||.||+||+|||++|...||.+++|++.||.||.||.|||.|||.++|||||+|.
T Consensus 1 ~~~~y~~~~ll~~~rGelfG~~~~~lP~~~mlm~~r~~~~~~~GG~~~kG~~~ae~d~~Pd~Wff~Chf~G~PvmPGClG 80 (169)
T TIGR01749 1 KKEAYTREELLACGRGELFGPGNAQLPAPPMLMIDRIVEISETGGKYGKGYVEAELDIRPDLWFFDCHFIGDPVMPGCLG 80 (169)
T ss_pred CCCCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCC
T ss_conf 96431224455312552026887778863034555555553148843564588743127773134214315873762000
Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCEEEEEEEEEEE
Q ss_conf 88879988640123346882667630451141023379857999999889630785799999999999999999971069
Q gi|254780460|r 84 LDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLRV 163 (172)
Q Consensus 84 iEa~~Ql~~~~~~~~~~~~~~~~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~~~~~~~~~~g~~~vdg~~i~~a~~l~v 163 (172)
++||+|+.++|+.|.+.+++++.++...+||.++|.|..+.++|+|+++++..++..+..+|+.+.+||+.||+++++.|
T Consensus 81 ld~mWql~Gf~l~W~G~~G~G~al~~Gevkf~G~v~P~~~~~~y~i~~~r~~~~~lv~~~~d~~~~~dG~~iy~~~~l~v 160 (169)
T TIGR01749 81 LDAMWQLVGFFLGWLGEPGRGRALGVGEVKFTGQVLPTAKKVTYKIDLKRVINRKLVLGIADGELKVDGRLIYEASDLRV 160 (169)
T ss_pred HHHHHHHHHHHEEECCCCCCCEEEECCEEEEEEEECCCEEEEEEEEEEEEEEEEEEEEEECCCEEEECCEEEEEECCCEE
T ss_conf 35677643211021178976205411204775553442157888652212210001243227457745212332045156
Q ss_pred EEECCCCC
Q ss_conf 98617688
Q gi|254780460|r 164 CLTIDRGV 171 (172)
Q Consensus 164 gl~~de~~ 171 (172)
|+|+++..
T Consensus 161 Gl~~~~~~ 168 (169)
T TIGR01749 161 GLFTETSA 168 (169)
T ss_pred EEECCCCC
T ss_conf 54132246
No 4
>TIGR01750 fabZ beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; InterPro: IPR010084 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes . FabZ is the primary dehydratase involved in fatty-acid elongation in type II FAS. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. ; GO: 0016836 hydro-lyase activity, 0006633 fatty acid biosynthetic process, 0005737 cytoplasm.
Probab=100.00 E-value=9.8e-45 Score=285.96 Aligned_cols=135 Identities=30% Similarity=0.427 Sum_probs=115.4
Q ss_pred CCHHHHHHHCCCCCCCCCCCCCC-CCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEHHHHHHH
Q ss_conf 89889998418835579988899-86412256899997184413423578875078655300455689952112757888
Q gi|254780460|r 8 YTYEEILRCGEGEMFGEGNAQLP-KPPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLDA 86 (172)
Q Consensus 8 f~~~~i~~~~~g~~fg~~~~rLP-~~p~lmiDrV~~i~~~~g~~g~G~i~aek~i~~d~wff~gHFp~~PvmPGvL~iEa 86 (172)
++.++|+++ || |.||||||||+++++++. .++|.||||-||+||+||||+.|||||||++||
T Consensus 1 ~~I~~I~~~------------LPHRYPfLLVDRi~e~~~~~~-----~ivA~KNVTINEPfF~GHFP~~PiMPGVLI~EA 63 (142)
T TIGR01750 1 LDIQEIMEL------------LPHRYPFLLVDRILELEPEGK-----RIVAIKNVTINEPFFQGHFPEKPIMPGVLIVEA 63 (142)
T ss_pred CCHHHHHHH------------CCCCCCCEEEEEEEEEECCCC-----EEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 975898984------------468887101326888724997-----899971167748988898850295970787888
Q ss_pred HHHHHHHHCCC-CC---C-CCCEEEEEECCCEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCEEEEEEEEE
Q ss_conf 79988640123-34---6-8826676304511410233798579999998896307857999999999999999999710
Q gi|254780460|r 87 LWQLTGFFLGW-LG---E-LGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDL 161 (172)
Q Consensus 87 ~~Ql~~~~~~~-~~---~-~~~~~~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~~~~~~~~~~g~~~vdg~~i~~a~~l 161 (172)
|||++|+++.. .+ . ....+|+++|++|||+||+|||++ .++++ +.+.++.+++++|++.|||+++++|+-+
T Consensus 64 lAQaaGvl~~~~L~~~~~~g~~~~F~gid~akFr~pV~PGDqL-~l~~e---~~~~~~~i~k~~~~A~VDG~vaAeaei~ 139 (142)
T TIGR01750 64 LAQAAGVLAILSLGGKKGKGKLVYFAGIDKAKFRKPVVPGDQL-ILEVE---FLKKRRKIGKFKGEAEVDGKVAAEAEIT 139 (142)
T ss_pred HHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEE-EEEEE---EEEEECCEEEEEEEEEECCEEEEEEEEE
T ss_conf 8988887742057987788628999886273035664678224-78788---5534124015788998899899778888
Q ss_pred EE
Q ss_conf 69
Q gi|254780460|r 162 RV 163 (172)
Q Consensus 162 ~v 163 (172)
++
T Consensus 140 ~a 141 (142)
T TIGR01750 140 FA 141 (142)
T ss_pred EE
T ss_conf 61
No 5
>pfam07977 FabA FabA-like domain. This enzyme domain has a HotDog fold.
Probab=100.00 E-value=1.1e-43 Score=280.01 Aligned_cols=130 Identities=47% Similarity=0.866 Sum_probs=120.4
Q ss_pred CC-CCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCC--CCEE
Q ss_conf 99-86412256899997184413423578875078655300455689952112757888799886401233468--8266
Q gi|254780460|r 29 LP-KPPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGEL--GKGR 105 (172)
Q Consensus 29 LP-~~p~lmiDrV~~i~~~~g~~g~G~i~aek~i~~d~wff~gHFp~~PvmPGvL~iEa~~Ql~~~~~~~~~~~--~~~~ 105 (172)
|| |+||||||||++++++||.+| ++++|+|+|++|||||+||||++|||||||++|||+|++++++++.+.. ...+
T Consensus 1 lPhR~PflliDrv~~~~~~g~~~g-~~i~a~k~v~~~e~~f~gHFp~~PvmPGvL~iEa~aQ~~~~~~~~~~~~~~~~~~ 79 (133)
T pfam07977 1 LPHRYPFLMIDRVTEIDPEGGKFK-GYIVAEKNVTPNEWFFQGHFPGDPVMPGVLGLEAMAQLGGFYLLWLGGGEGKGRA 79 (133)
T ss_pred CCCCCCEEEEEEEEEECCCCCCCC-CEEEEEEECCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHECCCCCCCCCCE
T ss_conf 968988036999999926998567-3999999448997221325779997883779999999999984505678885101
Q ss_pred EEEECCCEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCEEEEEEE
Q ss_conf 763045114102337985799999988963078579999999999999999997
Q gi|254780460|r 106 AVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQAN 159 (172)
Q Consensus 106 ~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~~~~~~~~~~g~~~vdg~~i~~a~ 159 (172)
+.++++||||++|+|||++++|+++++++..+++++++++|+++|||++||+|+
T Consensus 80 ~~~i~~~kFr~~V~PGD~~l~~ev~i~~i~~~~~~~~~~~g~a~Vdg~~v~eae 133 (133)
T pfam07977 80 RFGIDEVKFRGQVTPGDKQLRYEVEIKRIGPRRGVIGIADGRALVDGKLVYEAE 133 (133)
T ss_pred ECCCEEEEEEEEECCCCEEEEEEEEEEEEECCCCCEEEEEEEEEECCEEEEEEC
T ss_conf 045227899247659994999999999986168749999999999999999849
No 6
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=100.00 E-value=2.5e-40 Score=259.96 Aligned_cols=146 Identities=24% Similarity=0.335 Sum_probs=123.7
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCCCCCCC-CCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEHH
Q ss_conf 8865589889998418835579988899-864122568999971844134235788750786553004556899521127
Q gi|254780460|r 3 NRKSSYTYEEILRCGEGEMFGEGNAQLP-KPPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGC 81 (172)
Q Consensus 3 ~~~~~f~~~~i~~~~~g~~fg~~~~rLP-~~p~lmiDrV~~i~~~~g~~g~G~i~aek~i~~d~wff~gHFp~~PvmPGv 81 (172)
|++..+|.++|.++ || |+||||||||++++++. +++|.|+|+.|||||+||||++||||||
T Consensus 316 ~~~~~~d~~~i~~~------------lphR~Pfl~iD~v~~~~~~~------~~~a~Knvt~nE~ff~GHFP~~pvmPGv 377 (465)
T PRK13188 316 NAEPIMDINRIMEL------------LPHRYPFLLVDKIIEFKLDE------KIVGIKNVTMNEPFFQGHFPGNPVMPGV 377 (465)
T ss_pred CCCCCCCHHHHHHH------------CCCCCCEEEEEEEEEECCCC------EEEEEEECCCCCCHHCCCCCCCCCCCHH
T ss_conf 77860689999975------------88989768999988506997------8999993577882213578999989718
Q ss_pred HHHHHHHHHHHHHCCCC-CC--CCCEEEEEECCCEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCEEEEEE
Q ss_conf 57888799886401233-46--8826676304511410233798579999998896307857999999999999999999
Q gi|254780460|r 82 LGLDALWQLTGFFLGWL-GE--LGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQA 158 (172)
Q Consensus 82 L~iEa~~Ql~~~~~~~~-~~--~~~~~~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~~~~~~~~~~g~~~vdg~~i~~a 158 (172)
|++|||||+++++++.. .+ +...++++++++|||++|.|||++ +++++ -+.+.++.+++++|+++|||+++|+|
T Consensus 378 l~iEamaQ~~~~l~l~~~~~~~~~~~y~~~i~~~kFr~~V~PGD~l-~~~~~--~l~~~k~~i~k~~g~a~V~~~~v~ea 454 (465)
T PRK13188 378 LQIEAMAQTGGILVLNSVDNPENYSTYFMKIDKVKFRRPVVPGDTL-IIEAE--LLTPIRRGICQMDGKAYVGGELVCEA 454 (465)
T ss_pred HHHHHHHHHHHHHHEECCCCCCCEEEEEEECCCEEECCCCCCCCEE-EEEEE--EEECCCCCEEEEEEEEEECCEEEEEE
T ss_conf 9999999998887320477778807999960311886886999899-99999--90004797799999999999999999
Q ss_pred EEEEEEEECCCC
Q ss_conf 710699861768
Q gi|254780460|r 159 NDLRVCLTIDRG 170 (172)
Q Consensus 159 ~~l~vgl~~de~ 170 (172)
+ +.+++.+.++
T Consensus 455 e-~~a~iv~~~~ 465 (465)
T PRK13188 455 E-LMAQIVKKKE 465 (465)
T ss_pred E-EEEEEEECCC
T ss_conf 9-9999983589
No 7
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=100.00 E-value=7e-38 Score=245.40 Aligned_cols=140 Identities=28% Similarity=0.376 Sum_probs=117.6
Q ss_pred CCCCCCHHHHHHHCCCCCCCCCCCCCC-CCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEHHH
Q ss_conf 865589889998418835579988899-8641225689999718441342357887507865530045568995211275
Q gi|254780460|r 4 RKSSYTYEEILRCGEGEMFGEGNAQLP-KPPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCL 82 (172)
Q Consensus 4 ~~~~f~~~~i~~~~~g~~fg~~~~rLP-~~p~lmiDrV~~i~~~~g~~g~G~i~aek~i~~d~wff~gHFp~~PvmPGvL 82 (172)
++-.+|++||.++ || |+||||||||++++++. +++|.|+|+.|||||+||||++|+|||||
T Consensus 3 ~~~~l~~~~I~~~------------lPhR~PfL~iD~i~~~~~g~------~~~~~k~vs~nE~~f~GHFP~~PimPGvL 64 (149)
T PRK00006 3 ETMMLDIEEILEL------------LPHRYPFLLVDRVLELEPGK------SIVAIKNVTINEPFFQGHFPGRPVMPGVL 64 (149)
T ss_pred CEEEECHHHHHHH------------CCCCCCEEEEEEEEEECCCC------EEEEEEECCCCCCCCCCCCCCCCCCCHHH
T ss_conf 1189889999986------------89999869999999975998------89999964389771577588999286489
Q ss_pred HHHHHHHHHHHHCCCCCC----CCCEEEEEECCCEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCEEEEEE
Q ss_conf 788879988640123346----8826676304511410233798579999998896307857999999999999999999
Q gi|254780460|r 83 GLDALWQLTGFFLGWLGE----LGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQA 158 (172)
Q Consensus 83 ~iEa~~Ql~~~~~~~~~~----~~~~~~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~~~~~~~~~~g~~~vdg~~i~~a 158 (172)
++|||||++++++....+ ....++.+++++|||++|.|||+ +++++++. +.++.+++++|+++|||+++++|
T Consensus 65 liEamaQ~~~~l~~~~~~~~~~~~~~~l~~i~~vkF~~~V~PGd~-l~i~~~l~---~~~~~~~~~~~~a~V~g~~v~~a 140 (149)
T PRK00006 65 IVEAMAQAGGVLAFKSLGKDAKGKLVYFAGIDKARFRRPVVPGDQ-LILEVEFL---KKRRGIGKFKGVAKVDGKLVAEA 140 (149)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCCCCE-EEEEEEEE---EEECCEEEEEEEEEECCEEEEEE
T ss_conf 999999999998833347677984799996137898478799999-99999999---96589999999999999999999
Q ss_pred EEEEEEEE
Q ss_conf 71069986
Q gi|254780460|r 159 NDLRVCLT 166 (172)
Q Consensus 159 ~~l~vgl~ 166 (172)
+ +.+.+.
T Consensus 141 e-~~~~i~ 147 (149)
T PRK00006 141 E-LMFAIV 147 (149)
T ss_pred E-EEEEEE
T ss_conf 9-999997
No 8
>COG0764 FabA 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]
Probab=100.00 E-value=8.8e-38 Score=244.82 Aligned_cols=144 Identities=35% Similarity=0.526 Sum_probs=126.1
Q ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCC-CCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEHHHH
Q ss_conf 65589889998418835579988899-86412256899997184413423578875078655300455689952112757
Q gi|254780460|r 5 KSSYTYEEILRCGEGEMFGEGNAQLP-KPPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLG 83 (172)
Q Consensus 5 ~~~f~~~~i~~~~~g~~fg~~~~rLP-~~p~lmiDrV~~i~~~~g~~g~G~i~aek~i~~d~wff~gHFp~~PvmPGvL~ 83 (172)
.+++++.||.++ +| +.||||||||++++.++ ++++|+|+|++|||||+||||++|+|||||+
T Consensus 1 ~~~~~~~~i~~~------------lphryPfLmvDrv~~~~~~g-----~~i~a~k~Vt~nepfF~gHFP~~PimPGVLi 63 (147)
T COG0764 1 LLAIDIGEILEL------------LPHRYPFLLVDRVLEIDEEG-----KRIVAIKNVTINEPFFTGHFPGDPIMPGVLI 63 (147)
T ss_pred CCCCCHHHHHHH------------CCCCCCHHHEEEEEEECCCC-----CEEEEEECCCCCCCEECCCCCCCCCCCHHHH
T ss_conf 974488999634------------53137812000155540699-----5899997558888871795999997653699
Q ss_pred HHHHHHHHHHHCCCCCCC--CCEEEEEECCCEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCEEEEEEEEE
Q ss_conf 888799886401233468--826676304511410233798579999998896307857999999999999999999710
Q gi|254780460|r 84 LDALWQLTGFFLGWLGEL--GKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDL 161 (172)
Q Consensus 84 iEa~~Ql~~~~~~~~~~~--~~~~~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~~~~~~~~~~g~~~vdg~~i~~a~~l 161 (172)
+|||+|+.++++.+..+. ..+++++++++|||++|+|||+ |+++++.+..+...+.++++.+.|||++|++++.+
T Consensus 64 leamaQ~~g~~~~~~~~~~~~~~~~~gid~~kF~~~V~PGd~---l~l~~~~~~~~~~~~~~~~~~a~Vdg~~v~~a~~~ 140 (147)
T COG0764 64 LEAMAQAAGFLLGWLLGNKGKLGYFLGIDNAKFKRPVLPGDQ---LELEVKLLKSRRLGIGKAKGVATVDGKVVAEAELL 140 (147)
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEECCCCCCCCE---EEEEEEEEEECCCCEEEEEEEEEECCEEEEEEEEE
T ss_conf 999999999998334367861799998513335376599987---99999998723224489878999899999988779
Q ss_pred EEEEECC
Q ss_conf 6998617
Q gi|254780460|r 162 RVCLTID 168 (172)
Q Consensus 162 ~vgl~~d 168 (172)
.++...+
T Consensus 141 ~~~~~~~ 147 (147)
T COG0764 141 FAGVEKD 147 (147)
T ss_pred EEEEECC
T ss_conf 9985069
No 9
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=100.00 E-value=3.4e-35 Score=229.45 Aligned_cols=124 Identities=27% Similarity=0.354 Sum_probs=104.7
Q ss_pred CC-CCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCC---CCCE
Q ss_conf 99-8641225689999718441342357887507865530045568995211275788879988640123346---8826
Q gi|254780460|r 29 LP-KPPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGE---LGKG 104 (172)
Q Consensus 29 LP-~~p~lmiDrV~~i~~~~g~~g~G~i~aek~i~~d~wff~gHFp~~PvmPGvL~iEa~~Ql~~~~~~~~~~---~~~~ 104 (172)
|| |+||||||||++++++. +++|+|+|+.|||||+||||++|+|||||++|||+|+++++.....+ ....
T Consensus 1 lPhR~PfL~iD~I~~~~~g~------~~~~~k~vs~ne~ff~gHfp~~PvmPgvl~iEamaQ~~~~l~~~~~~~~~~~~~ 74 (131)
T cd01288 1 LPHRYPFLLVDRVLELEPGK------SIVAIKNVTINEPFFQGHFPGNPIMPGVLIIEALAQAAGILGLKSLEDFEGKLV 74 (131)
T ss_pred CCCCCCEEEEEEEEEECCCC------EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 96899848899999985899------899999756998613575899984774899999999999997115677898089
Q ss_pred EEEEECCCEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCEEEEEEEEEE
Q ss_conf 6763045114102337985799999988963078579999999999999999997106
Q gi|254780460|r 105 RAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLR 162 (172)
Q Consensus 105 ~~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~~~~~~~~~~g~~~vdg~~i~~a~~l~ 162 (172)
++.+++++|||++|.|||+ +++++++.+ .++.+++++|+++|||+++|+++-.+
T Consensus 75 ~l~~i~~~kF~~~V~PGd~-l~i~~~~~~---~~~~~~~~~~~~~v~~~~v~~ae~~~ 128 (131)
T cd01288 75 YFAGIDKARFRKPVVPGDQ-LILEVELLK---LRRGIGKFKGKAYVDGKLVAEAELMF 128 (131)
T ss_pred EEEECCEEEECCCCCCCCE-EEEEEEEEE---EECCEEEEEEEEEECCEEEEEEEEEE
T ss_conf 9998148889478899999-999999999---76999999999999999999999993
No 10
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=100.00 E-value=6.3e-33 Score=215.97 Aligned_cols=124 Identities=38% Similarity=0.598 Sum_probs=106.5
Q ss_pred CCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCC-----CCCE
Q ss_conf 98641225689999718441342357887507865530045568995211275788879988640123346-----8826
Q gi|254780460|r 30 PKPPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGE-----LGKG 104 (172)
Q Consensus 30 P~~p~lmiDrV~~i~~~~g~~g~G~i~aek~i~~d~wff~gHFp~~PvmPGvL~iEa~~Ql~~~~~~~~~~-----~~~~ 104 (172)
.++||||||||++++++ ++++|+|+|++|+|||+||||++|+|||||++|+|+|++++++.+... ...+
T Consensus 2 hr~p~lliD~v~~~~~~------~~~~~~k~v~~~~~ff~gHfp~~pv~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~~ 75 (131)
T cd00493 2 HRYPMLLVDRVLEIDPG------GRIVAEKNVTPNEPFFQGHFPGDPVMPGVLGIEAMAQAAAALAGLLGLGKGNPPRLG 75 (131)
T ss_pred CCCCEEEEEEEEEECCC------CEEEEEEEECCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 89976889999998699------989999992799774772057999666037999999999999741133447788358
Q ss_pred EEEEECCCEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCEEEEEEEEEEEE
Q ss_conf 676304511410233798579999998896307857999999999999999999710699
Q gi|254780460|r 105 RAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLRVC 164 (172)
Q Consensus 105 ~~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~~~~~~~~~~g~~~vdg~~i~~a~~l~vg 164 (172)
++.+++++||+++|.||| ++++++++++. +..+++++|+++|||+++++++ +.+.
T Consensus 76 ~l~~~~~~kf~~~v~Pgd-~l~i~v~~~~~---~~~~~~~~~~~~v~~~~v~~~~-l~~~ 130 (131)
T cd00493 76 YLAGVRKVKFRGPVLPGD-TLTLEVELLKV---RRGLGKFDGRAYVDGKLVAEAE-LMAA 130 (131)
T ss_pred EEEEEEEEEEECEECCCC-EEEEEEEEEEE---ECCEEEEEEEEEECCEEEEEEE-EEEE
T ss_conf 999713889934047998-99999999998---8999999999999999999999-9970
No 11
>cd01289 FabA_like Domain of unknown function, appears to be related to a diverse group of beta-hydroxydecanoyl ACP dehydratases (FabA) and beta-hydroxyacyl ACP dehydratases (FabZ). This group appears to lack the conserved active site histidine of FabA and FabZ.
Probab=99.57 E-value=8.2e-14 Score=102.40 Aligned_cols=123 Identities=17% Similarity=0.233 Sum_probs=99.7
Q ss_pred CCC-CCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCC----C-CC
Q ss_conf 899-86412256899997184413423578875078655300455689952112757888799886401233----4-68
Q gi|254780460|r 28 QLP-KPPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWL----G-EL 101 (172)
Q Consensus 28 rLP-~~p~lmiDrV~~i~~~~g~~g~G~i~aek~i~~d~wff~gHFp~~PvmPGvL~iEa~~Ql~~~~~~~~----~-~~ 101 (172)
.|| ++||+|||+|++++++ .++++.+|++|.|||. +.++.+|++..+|.|||+++.+.... + ..
T Consensus 6 llPH~~pM~LlD~v~~~~~~-------~i~~~~~i~~~~~f~~---~~~g~lpa~~~iE~mAQa~Aa~~g~~a~~~g~~~ 75 (138)
T cd01289 6 LIPHDGPMCLLDRVISWDDD-------SIHCRATVHPDPLFPL---RAHGRLPAWVGIEYMAQAIAAHGGLLARQQGNPP 75 (138)
T ss_pred HCCCCCCEEEEEEEEEECCC-------EEEEEEEECCCCCCCC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 09999985877776478698-------7999999478877735---5689522579999999999999988888659998
Q ss_pred CCEEEEEECCCEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCEEEEEEEEEEE
Q ss_conf 82667630451141023379857999999889630785799999999999999999971069
Q gi|254780460|r 102 GKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLRV 163 (172)
Q Consensus 102 ~~~~~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~~~~~~~~~~g~~~vdg~~i~~a~~l~v 163 (172)
..+++++..+++++....|...++ .+.+++.......++.|++++..+|+.+++++ +.|
T Consensus 76 ~~GfLlg~Rk~~~~~~~f~~g~~l--~i~~~~~l~~~~g~~vf~c~i~~~~~~la~g~-l~V 134 (138)
T cd01289 76 RPGFLLGSRKYEAHVDRFDLGSTL--LIVVAELLQGDSGLGVFECTIEDQGGVLASGR-LNV 134 (138)
T ss_pred CCEEEEEEEEEEEECCEECCCCCC--EEHHHHHEECCCCEEEEEEEEEECCEEEEEEE-EEE
T ss_conf 857999977889843421899840--61335435617975999999998999999999-998
No 12
>COG4706 Predicted 3-hydroxylacyl-(acyl carrier protein) dehydratase [Lipid metabolism]
Probab=98.69 E-value=2e-08 Score=70.41 Aligned_cols=115 Identities=22% Similarity=0.447 Sum_probs=89.1
Q ss_pred CCCC-CCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCC-CCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCC----CC
Q ss_conf 8899-8641225689999718441342357887507865-5300455689952112757888799886401233----46
Q gi|254780460|r 27 AQLP-KPPMLMFHRITQISETGGNYNQGVVRAEMDITPN-LWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWL----GE 100 (172)
Q Consensus 27 ~rLP-~~p~lmiDrV~~i~~~~g~~g~G~i~aek~i~~d-~wff~gHFp~~PvmPGvL~iEa~~Ql~~~~~~~~----~~ 100 (172)
++|| +.||+++|+|+.++.+ .+++.-+|+|+ +||.. -+-.||+.-.||-|||+.+.+..+. +.
T Consensus 14 a~LPHsg~MlLLd~VvtwdDd-------~~rc~atvsp~~a~~l~----~dg~Lpa~~gIElmAQAv~vh~g~l~~rq~~ 82 (161)
T COG4706 14 AYLPHSGPMLLLDDVVTWDDD-------SARCRATVSPSGAPFLD----PDGNLPAWFGIELMAQAVGVHSGWLRHRQGK 82 (161)
T ss_pred HHCCCCCCEEEEEEEEEECCC-------EEEEEEEECCCCCCCCC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 848887856753324233488-------37887676788887637----6777545556999999999989888750279
Q ss_pred C--CCEEEEEECCCEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCEE
Q ss_conf 8--82667630451141023379857999999889630785799999999999999
Q gi|254780460|r 101 L--GKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKE 154 (172)
Q Consensus 101 ~--~~~~~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~~~~~~~~~~g~~~vdg~~ 154 (172)
+ ..+++++..++-.+-+.+|-.+.+. +.+++.....+..+.+++++..||+.
T Consensus 83 ps~r~GfLlg~Rkleaha~~l~~~q~ll--~t~~e~iqddgg~g~f~csir~d~~~ 136 (161)
T COG4706 83 PSIRLGFLLGARKLEAHAGILPAGQTLL--ITVKELIQDDGGFGSFECSIRNDGEA 136 (161)
T ss_pred CCCCCEEEEEEEEEEEECCCCCCCCCHH--HHHHHHHCCCCCCEEEEEEECCCCHH
T ss_conf 7654124630001122135457765357--99999851578841799987168621
No 13
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=97.81 E-value=0.0004 Score=44.80 Aligned_cols=98 Identities=17% Similarity=0.091 Sum_probs=64.8
Q ss_pred EECCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEEEEEEC--
Q ss_conf 507865530045568995211275788879988640123346882667630451141023379857999999889630--
Q gi|254780460|r 59 MDITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILR-- 136 (172)
Q Consensus 59 k~i~~d~wff~gHFp~~PvmPGvL~iEa~~Ql~~~~~~~~~~~~~~~~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~-- 136 (172)
..++-|+.|.+....+..+.+|.+.+-.+..+ +.. ..........+.+++||.+||.||| +++.+++|.+...
T Consensus 34 ~p~H~D~e~A~~s~fg~~ia~G~~~~~~~~gl---~~~-~~~~~~~a~~g~~~lrf~~PV~~GD-Ti~~~~~V~e~~~~~ 108 (142)
T cd03452 34 FYAHMDEIAAKASFFGKRVAHGYFVLSAAAGL---FVD-PAPGPVLANYGLENLRFLEPVYPGD-TIQVRLTCKRKIPRD 108 (142)
T ss_pred CHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHH---EEE-CCCCCEEEECCCCEEEECCCCCCCC-EEEEEEEEEEEEECC
T ss_conf 73024899996288998141468999998754---851-7887457723442569708989999-999999999985167
Q ss_pred -CCCEEEEEEEEEEE-CCEEEEEEEEE
Q ss_conf -78579999999999-99999999710
Q gi|254780460|r 137 -GRVVLGAADGWVKV-NGKEIYQANDL 161 (172)
Q Consensus 137 -~~~~~~~~~g~~~v-dg~~i~~a~~l 161 (172)
.+..++..+.++.. +|++|++.+..
T Consensus 109 ~~~~Giv~~~~~~~NQ~ge~V~~~~~~ 135 (142)
T cd03452 109 GQDYGVVRWDAEVTNQNGELVASYDIL 135 (142)
T ss_pred CCCCEEEEEEEEEECCCCCEEEEEEEE
T ss_conf 899679999999997999999993997
No 14
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=97.46 E-value=0.0019 Score=40.85 Aligned_cols=96 Identities=10% Similarity=-0.083 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCC-CCEEEEEECCCEEEEEECCCCCEEEEEEEEEEEECC--
Q ss_conf 78655300455689952112757888799886401233468-826676304511410233798579999998896307--
Q gi|254780460|r 61 ITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGEL-GKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRG-- 137 (172)
Q Consensus 61 i~~d~wff~gHFp~~PvmPGvL~iEa~~Ql~~~~~~~~~~~-~~~~~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~~-- 137 (172)
++-|+=|.+..-.++++.+|.+.+--+.+++.- ..... ......+.+++||.++|.||| +++.+.+|.+...+
T Consensus 36 ~H~D~~~A~~~~f~~~ia~G~~~~s~~~~l~~~---~~~~~~~~~a~~g~~~~rf~~PV~~GD-tl~~~~~V~~~~~~~~ 111 (140)
T cd03446 36 IHTDAEYAKKTRFGERIAHGLLTLSIATGLLQR---LGVFERTVVAFYGIDNLRFLNPVFIGD-TIRAEAEVVEKEEKDG 111 (140)
T ss_pred CCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHC---CCCCCCCEEEECCCEEEEECCCCCCCC-EEEEEEEEEEEEECCC
T ss_conf 546877885478988233447899999887631---677775336512310458748888999-9999999999541579
Q ss_pred -CCEEEEEEEEEEE-CCEEEEEEEE
Q ss_conf -8579999999999-9999999971
Q gi|254780460|r 138 -RVVLGAADGWVKV-NGKEIYQAND 160 (172)
Q Consensus 138 -~~~~~~~~g~~~v-dg~~i~~a~~ 160 (172)
+..++.++.++.. +|+.|++.+.
T Consensus 112 ~~~Giv~~~~~~~NQ~ge~V~~~~~ 136 (140)
T cd03446 112 EDAGVVTRRIEVVNQRGEVVQSGEM 136 (140)
T ss_pred CCCEEEEEEEEEECCCCCEEEEEEE
T ss_conf 9827999999999489999999798
No 15
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=97.27 E-value=0.0045 Score=38.54 Aligned_cols=90 Identities=12% Similarity=0.081 Sum_probs=55.1
Q ss_pred CCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEEEEEECCCCEEEE
Q ss_conf 55300455689952112757888799886401233468826676304511410233798579999998896307857999
Q gi|254780460|r 64 NLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVVLGA 143 (172)
Q Consensus 64 d~wff~gHFp~~PvmPGvL~iEa~~Ql~~~~~~~~~~~~~~~~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~~~~~~~~ 143 (172)
|+=|.+..=.+.+++||.|..--+.++.+-. . +..+....-.+++|+++|.||| +++.+.+|.++...+. .+.
T Consensus 34 D~~~A~~~g~~~~i~~G~l~~s~~~~~~~~~---~--~g~g~~~~~~~~rF~~PV~~gD-tl~~~~~V~~~~~~~~-~v~ 106 (128)
T cd03449 34 DEEYAKKTRFGGRIAHGMLTASLISAVLGTL---L--PGPGTIYLSQSLRFLRPVFIGD-TVTATVTVTEKREDKK-RVT 106 (128)
T ss_pred CHHHHHHCCCCCCEECCHHHHHHHHHHHHHC---C--CCCCEEEEEEEEEECCCCCCCC-EEEEEEEEEEEECCCC-EEE
T ss_conf 9999965688860331277899999997405---6--8986187434799935679999-9999999999978999-999
Q ss_pred EEEEEEE-CCEEEEEEEE
Q ss_conf 9999999-9999999971
Q gi|254780460|r 144 ADGWVKV-NGKEIYQAND 160 (172)
Q Consensus 144 ~~g~~~v-dg~~i~~a~~ 160 (172)
.+.++.. ||++|++.+-
T Consensus 107 ~~~~~~nq~g~~V~~G~a 124 (128)
T cd03449 107 LETVCTNQNGEVVIEGEA 124 (128)
T ss_pred EEEEEEECCCCEEEEEEE
T ss_conf 999999689999999899
No 16
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=97.18 E-value=0.0048 Score=38.42 Aligned_cols=92 Identities=8% Similarity=-0.040 Sum_probs=55.3
Q ss_pred CCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEEEEEEC---C-CCEEE
Q ss_conf 0045568995211275788879988640123346882667630451141023379857999999889630---7-85799
Q gi|254780460|r 67 FFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILR---G-RVVLG 142 (172)
Q Consensus 67 ff~gHFp~~PvmPGvL~iEa~~Ql~~~~~~~~~~~~~~~~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~---~-~~~~~ 142 (172)
|.+.--.+..+.+|.+.. |+++.+..- ............+.++++|++||.||| +++.+++|.+... + .+.++
T Consensus 40 ~A~~s~fg~~ia~G~~t~-~l~~~l~~~-~~~~~~~~~a~~g~~~~rf~~PV~~GD-Ti~~~~eV~~~~~~~sr~~~GiV 116 (140)
T cd03454 40 AAKESLFGGLAASGWHTA-AITMRLLVD-AGLSGSASGGSPGIDELRWPRPVRPGD-TLSVEVEVLDKRPSRSRPDRGIV 116 (140)
T ss_pred HHHHCCCCCEEECCCHHH-HHHHHHEEH-HCCCCCCEEEECCCCEEEECCCCCCCC-EEEEEEEEEEEEECCCCCCCEEE
T ss_conf 995488985441230578-888665501-024556301242521258837876899-99999999993645778983699
Q ss_pred EEEEEEEE-CCEEEEEEEEE
Q ss_conf 99999999-99999999710
Q gi|254780460|r 143 AADGWVKV-NGKEIYQANDL 161 (172)
Q Consensus 143 ~~~g~~~v-dg~~i~~a~~l 161 (172)
..+.++.. +|+.|++.+-.
T Consensus 117 ~~~~~~~NQ~ge~V~~~~~~ 136 (140)
T cd03454 117 TLRSETLNQRGEVVLTFEAT 136 (140)
T ss_pred EEEEEEEECCCCEEEEEEEE
T ss_conf 99999992899999998981
No 17
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=97.17 E-value=0.0055 Score=38.04 Aligned_cols=99 Identities=7% Similarity=-0.057 Sum_probs=61.2
Q ss_pred CCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEEEEEECC---
Q ss_conf 78655300455689952112757888799886401233468826676304511410233798579999998896307---
Q gi|254780460|r 61 ITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRG--- 137 (172)
Q Consensus 61 i~~d~wff~gHFp~~PvmPGvL~iEa~~Ql~~~~~~~~~~~~~~~~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~~--- 137 (172)
++-|+=|.+..-.+.++.+|.+.+- ++. +. ............++.++++|.++|.||| +++.+.+|.+....
T Consensus 39 lH~D~e~a~~~~fg~~ia~G~~~~s-~~~--~l-~~~~~~~~~~a~lg~~~~rf~~PV~~GD-tl~~~~eV~~~r~~~sr 113 (146)
T cd03451 39 LHFDAAYAAKTEFGRRLVNSLFTLS-LAL--GL-SVNDTSLTAVANLGYDEVRFPAPVFHGD-TLYAESEVLSKRESKSR 113 (146)
T ss_pred CCCCHHHHHHCCCCCCCCCHHHHHH-HHH--HE-EECCCCCCEEEEEEEEEEEEECCCCCCC-EEEEEEEEEEEEECCCC
T ss_conf 0258999963789873211245555-444--13-5325885704657840359937776999-99999999998745889
Q ss_pred -CCEEEEEEEEEEE-CCEEEEEEEEEEEEE
Q ss_conf -8579999999999-999999997106998
Q gi|254780460|r 138 -RVVLGAADGWVKV-NGKEIYQANDLRVCL 165 (172)
Q Consensus 138 -~~~~~~~~g~~~v-dg~~i~~a~~l~vgl 165 (172)
+..++.+..++.. +|++|.+.+. .+.+
T Consensus 114 ~~~Giv~~~~~~~NQ~ge~V~~~~~-~~lv 142 (146)
T cd03451 114 PDAGIVTVRTVGYNQDGEPVLSFER-TALV 142 (146)
T ss_pred CCCEEEEEEEEEECCCCCEEEEEEE-EEEE
T ss_conf 9857999999999079989999399-9899
No 18
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=97.12 E-value=0.014 Score=35.57 Aligned_cols=93 Identities=18% Similarity=0.172 Sum_probs=64.2
Q ss_pred EEEECCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEEEEEEC
Q ss_conf 87507865530045568995211275788879988640123346882667630451141023379857999999889630
Q gi|254780460|r 57 AEMDITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILR 136 (172)
Q Consensus 57 aek~i~~d~wff~gHFp~~PvmPGvL~iEa~~Ql~~~~~~~~~~~~~~~~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~ 136 (172)
.++.++++++. .+++++|+..++.+.++...++.............-..++|++++.|||+ +.++.++...
T Consensus 3 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~-i~~~~~~~~~-- 73 (100)
T cd03440 3 LRLTVTPEDID------GGGIVHGGLLLALADEAAGAAAARLGGRGLGAVTLSLDVRFLRPVRPGDT-LTVEAEVVRV-- 73 (100)
T ss_pred EEEECCHHHCC------CCCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCE-EEEEEEEEEC--
T ss_conf 99997989949------89859079999999999999999856899359999999998005879909-9999999988--
Q ss_pred CCCEEEEEEEEEEEC-CEEEEEEE
Q ss_conf 785799999999999-99999997
Q gi|254780460|r 137 GRVVLGAADGWVKVN-GKEIYQAN 159 (172)
Q Consensus 137 ~~~~~~~~~g~~~vd-g~~i~~a~ 159 (172)
+.........++.+ |+++++++
T Consensus 74 -~~~~~~~~~~~~~~~~~~~~~~~ 96 (100)
T cd03440 74 -GRSSVTVEVEVRNEDGKLVATAT 96 (100)
T ss_pred -CCEEEEEEEEEEECCCCEEEEEE
T ss_conf -97199999999989897999999
No 19
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=96.96 E-value=0.017 Score=35.14 Aligned_cols=95 Identities=14% Similarity=0.138 Sum_probs=54.8
Q ss_pred ECCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEEEEEECCCC
Q ss_conf 07865530045568995211275788879988640123346882667630451141023379857999999889630785
Q gi|254780460|r 60 DITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGRV 139 (172)
Q Consensus 60 ~i~~d~wff~gHFp~~PvmPGvL~iEa~~Ql~~~~~~~~~~~~~~~~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~~~~ 139 (172)
.|+-|+-|.+.-=.++||.-|.+. =|+++.+ +..+. ..+......-..++|+++|.|||+ ++.+++++.... +.
T Consensus 27 PiH~D~~~A~~~gf~~~I~HGm~~-~a~~~~~--l~~~~-~~g~~~~~~~~~~rF~~pV~~GD~-lt~~v~v~~~~~-~~ 100 (126)
T cd03447 27 PIHVSRVFASYAGLPGTITHGMYT-SAAVRAL--VETWA-ADNDRSRVRSFTASFVGMVLPNDE-LEVRLEHVGMVD-GR 100 (126)
T ss_pred CCCCCHHHHHHCCCCCCCHHHHHH-HHHHHHH--HHHHC-CCCCCEEEEEEEEEEEECCCCCCE-EEEEEEEEEEEC-CC
T ss_conf 203799899874999966247679-9999999--99743-799963899998798103259999-999999999978-91
Q ss_pred EEEEEEEEEEECCEEEEEEEE
Q ss_conf 799999999999999999971
Q gi|254780460|r 140 VLGAADGWVKVNGKEIYQAND 160 (172)
Q Consensus 140 ~~~~~~g~~~vdg~~i~~a~~ 160 (172)
..+.++.....+|+.+.+.+-
T Consensus 101 ~~v~~~~~~~~~G~~Vl~G~A 121 (126)
T cd03447 101 KVIKVEARNEETGELVLRGEA 121 (126)
T ss_pred EEEEEEEEECCCCEEEEEEEE
T ss_conf 799999999769909999999
No 20
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=96.82 E-value=0.029 Score=33.73 Aligned_cols=92 Identities=14% Similarity=0.117 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEEEEEECCCCEE
Q ss_conf 86553004556899521127578887998864012334688266763045114102337985799999988963078579
Q gi|254780460|r 62 TPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVVL 141 (172)
Q Consensus 62 ~~d~wff~gHFp~~PvmPGvL~iEa~~Ql~~~~~~~~~~~~~~~~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~~~~~~ 141 (172)
+-|+-|-+.-..+.+|-+|.+.-- +.+-.+. ...++.+-...-++++|+++|.+|| +++..++|++....++ .
T Consensus 45 Hld~e~A~~t~F~~~IaHGm~~as----LiSavLG-t~LPGpGTiYl~Q~L~F~~PV~iGD-tvtatVtV~ek~~~k~-~ 117 (465)
T PRK08190 45 HLDAAYAASDGFHHVVAHGMWGGA----LISAVLG-TRLPGPGTIYLSQSLRFRRPVRIGD-TITVTVTVREKRPEKR-I 117 (465)
T ss_pred CCCHHHHHCCCCCCCEEHHHHHHH----HHHHHHH-CCCCCCCEEEEEEEEEECCCCCCCC-EEEEEEEEEEECCCCC-E
T ss_conf 789668612788871430777899----9999974-6589997587651467667888999-8999999999717889-8
Q ss_pred EEEEEEEE-ECCEEEEEEEE
Q ss_conf 99999999-99999999971
Q gi|254780460|r 142 GAADGWVK-VNGKEIYQAND 160 (172)
Q Consensus 142 ~~~~g~~~-vdg~~i~~a~~ 160 (172)
+..+..|. .+|+.|++.+-
T Consensus 118 V~L~~~~~nq~G~~Vi~G~A 137 (465)
T PRK08190 118 VLLDCRCTNQDGEVVISGTA 137 (465)
T ss_pred EEEEEEEECCCCCEEEEEEE
T ss_conf 99997999069979998579
No 21
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=96.65 E-value=0.024 Score=34.30 Aligned_cols=56 Identities=16% Similarity=0.111 Sum_probs=40.7
Q ss_pred EEEEECCCEEEEEECCCCCEEEEEEEEEEEECC-C--CEEEEEEEEEEE-CCEEEEEEEEE
Q ss_conf 676304511410233798579999998896307-8--579999999999-99999999710
Q gi|254780460|r 105 RAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRG-R--VVLGAADGWVKV-NGKEIYQANDL 161 (172)
Q Consensus 105 ~~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~~-~--~~~~~~~g~~~v-dg~~i~~a~~l 161 (172)
...+++++||..+|.||| +++.++++|+...+ . ...+..+.++.. +|++|++.+-+
T Consensus 612 an~g~~~lrf~~pv~~gd-~i~v~lt~k~k~~r~~~~~g~v~w~~~v~nq~~~~va~y~~l 671 (676)
T PRK11563 612 ANYGLDNLRFIEPVKPGD-TIQVRLTCKRKTPRNQKSYGEVRWDVEVTNQHGEPVATYDIL 671 (676)
T ss_pred ECCCCCEEEECCCCCCCC-EEEEEEEEEEECCCCCCCCCEEEEEEEEECCCCCEEEEEEEE
T ss_conf 012743058615668997-799999999803677898736999999985899878998654
No 22
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=96.54 E-value=0.057 Score=32.03 Aligned_cols=92 Identities=14% Similarity=0.050 Sum_probs=55.1
Q ss_pred CCCCCCCCC-CCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEEEEEE-CCC
Q ss_conf 786553004-556899521127578887998864012334688266763045114102337985799999988963-078
Q gi|254780460|r 61 ITPNLWFFD-CHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKIL-RGR 138 (172)
Q Consensus 61 i~~d~wff~-gHFp~~PvmPGvL~iEa~~Ql~~~~~~~~~~~~~~~~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~-~~~ 138 (172)
++-|+-|.+ .+|| +++.+|.+..--+.+++.- +.+... .. .-.+++|+++|.||| +++...+|++.. ..+
T Consensus 30 iH~D~~~A~~~g~~-~~iahG~~~~a~~~~~~~~---~~g~~~--~~-~~~~~rF~~pV~~Gd-tl~~~~~V~~k~~~~~ 101 (127)
T cd03453 30 IHYDEDFAKKVGLP-GVIAHGMLTMGLLGRLVTD---WVGDPG--RV-VSFGVRFTKPVPVPD-TLTCTGIVVEKTVADG 101 (127)
T ss_pred CEECHHHHHHCCCC-CCEECHHHHHHHHHHHHHH---HCCCCE--EE-EEEECEEECCCCCCC-EEEEEEEEEEEEECCC
T ss_conf 67988899565999-8508088889999998763---159974--99-992054948601899-9999999999898289
Q ss_pred CEEEEEEEEEEE-CCEEEEEEEE
Q ss_conf 579999999999-9999999971
Q gi|254780460|r 139 VVLGAADGWVKV-NGKEIYQAND 160 (172)
Q Consensus 139 ~~~~~~~g~~~v-dg~~i~~a~~ 160 (172)
...+.++.++.. +|+.+++.+-
T Consensus 102 ~~~v~~~v~v~nq~Ge~vv~G~A 124 (127)
T cd03453 102 EDALTVTVDATDQAGGKKVLGRA 124 (127)
T ss_pred CCEEEEEEEEEECCCCEEEEEEE
T ss_conf 97899999999999999999999
No 23
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=96.49 E-value=0.06 Score=31.89 Aligned_cols=91 Identities=11% Similarity=0.064 Sum_probs=54.7
Q ss_pred CCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEEEEEECC-CCEEE
Q ss_conf 55300455689952112757888799886401233468826676304511410233798579999998896307-85799
Q gi|254780460|r 64 NLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRG-RVVLG 142 (172)
Q Consensus 64 d~wff~gHFp~~PvmPGvL~iEa~~Ql~~~~~~~~~~~~~~~~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~~-~~~~~ 142 (172)
|+=|.+..=.++++.||.+..--+.+++.-++. . .........+++|+++|.||| +++.+.+|.+.... +...+
T Consensus 31 D~~~a~~~~~~~~ia~G~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~f~~pv~~GD-tl~~~~~v~~~~~~~~~~~v 105 (127)
T cd03441 31 DPEYAKAAGFGGRIAHGMLTLSLASGLLVQWLP---G-TDGANLGSQSVRFLAPVFPGD-TLRVEVEVLGKRPSKGRGVV 105 (127)
T ss_pred CHHHHHHCCCCCCEECCHHHHHHHHHHHHHHCC---C-CCCEEEEEEEEEEECCCCCCC-EEEEEEEEEEEEECCCCCEE
T ss_conf 688883578986231554499999999988706---6-551356564886504679999-99999999999975997099
Q ss_pred EEEEEEEE-CCEEEEEEE
Q ss_conf 99999999-999999997
Q gi|254780460|r 143 AADGWVKV-NGKEIYQAN 159 (172)
Q Consensus 143 ~~~g~~~v-dg~~i~~a~ 159 (172)
.....+.. +|+++...+
T Consensus 106 ~~~~~~~nq~~~~v~~g~ 123 (127)
T cd03441 106 TVRTEARNQGGEVVLSGE 123 (127)
T ss_pred EEEEEEEECCCCEEEEEE
T ss_conf 999999979999999999
No 24
>pfam01575 MaoC_dehydratas MaoC like domain. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase. The MaoC protein is found to share similarity with a wide variety of enzymes; estradiol 17 beta-dehydrogenase 4, peroxisomal hydratase-dehydrogenase-epimerase, fatty acid synthase beta subunit. Several bacterial proteins that are composed solely of this domain have (R)-specific enoyl-CoA hydratase activity. This domain is also present in the NodN nodulation protein N.
Probab=96.45 E-value=0.04 Score=32.95 Aligned_cols=82 Identities=18% Similarity=0.100 Sum_probs=48.1
Q ss_pred CCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEEEEEECCCCE
Q ss_conf 78655300455689952112757888799886401233468826676304511410233798579999998896307857
Q gi|254780460|r 61 ITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVV 140 (172)
Q Consensus 61 i~~d~wff~gHFp~~PvmPGvL~iEa~~Ql~~~~~~~~~~~~~~~~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~~~~~ 140 (172)
++-|+-|.+-.-.+.++.+|.+..-.+..++.-. .. .......+.++++|.++|.||| +++.++++......+..
T Consensus 36 iH~D~~~A~~~~f~~~iahG~~t~s~~~~~~~~~---~~-~~~~~~~~~~~~rF~~PV~~GD-tl~~~~ev~~~~~~k~~ 110 (123)
T pfam01575 36 IHVDPEFAKLAGFGGPIAHGMLTLAIARGLVEEQ---GG-DNVVARYGGWSVRFTGPVFPGD-TLRTEVEVVGKRDGREI 110 (123)
T ss_pred CCCCHHHHHHCCCCCEECCCHHHHHHHHHHHHHH---CC-CCCEEEEEEEEEEECCCCCCCC-EEEEEEEEEEEECCCCE
T ss_conf 1468778835789980215177999999998887---27-7741555521778778878899-99999999999868778
Q ss_pred EEEEEEEE
Q ss_conf 99999999
Q gi|254780460|r 141 LGAADGWV 148 (172)
Q Consensus 141 ~~~~~g~~ 148 (172)
......+
T Consensus 111 -~~~~~~~ 117 (123)
T pfam01575 111 -KVVETTV 117 (123)
T ss_pred -EEEEEEE
T ss_conf -9999999
No 25
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=95.85 E-value=0.15 Score=29.58 Aligned_cols=90 Identities=18% Similarity=0.112 Sum_probs=60.8
Q ss_pred CCCEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEEEEEECCC-C-EEEEEEEEEEEC
Q ss_conf 99521127578887998864012334688266763045114102337985799999988963078-5-799999999999
Q gi|254780460|r 74 NDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGR-V-VLGAADGWVKVN 151 (172)
Q Consensus 74 ~~PvmPGvL~iEa~~Ql~~~~~~~~~~~~~~~~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~~~-~-~~~~~~g~~~vd 151 (172)
+.+|.+|-|.+--+..+..- .....+...+..-+.+++||..+|..|+ .++.+.+++++...+ . .....+.++.++
T Consensus 55 g~tIAHGfltLSl~~~~~~~-~~~~~~~~~~vNYG~dkvRF~~PV~vGs-~vR~~~~l~~v~~~~~g~~~~~~~~tvEie 132 (149)
T cd03450 55 GGTIAHGFLTLSLLPALTPQ-LFRVEGVKMGVNYGLDKVRFPAPVPVGS-RVRGRFTLLSVEELKGGGVQVTLEVTVEIE 132 (149)
T ss_pred CCCCCCHHHHHHHHHHHHHH-CCCCCCCEEEEECCCCCEEECCCCCCCC-EEEEEEEEEEEEECCCCEEEEEEEEEEEEC
T ss_conf 87346506699999988752-6676784333300335267068756799-999999999989918984999999999995
Q ss_pred C--EEEEEEEEEEEEE
Q ss_conf 9--9999997106998
Q gi|254780460|r 152 G--KEIYQANDLRVCL 165 (172)
Q Consensus 152 g--~~i~~a~~l~vgl 165 (172)
| |++|-|+-+...+
T Consensus 133 g~~kPa~vAe~l~~~~ 148 (149)
T cd03450 133 GEDKPACVAEWISRLY 148 (149)
T ss_pred CCCCCEEEEEEEEEHH
T ss_conf 8988789998855011
No 26
>PRK13693 (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional
Probab=94.93 E-value=0.31 Score=27.62 Aligned_cols=100 Identities=15% Similarity=0.112 Sum_probs=59.3
Q ss_pred EECCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEC-CCC---CEEEEEEEEEEE
Q ss_conf 5078655300455689952112757888799886401233468826676304511410233-798---579999998896
Q gi|254780460|r 59 MDITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVT-PDC---KLVEYGIDFKKI 134 (172)
Q Consensus 59 k~i~~d~wff~gHFp~~PvmPGvL~iEa~~Ql~~~~~~~~~~~~~~~~~~~~~vkfr~~V~-Pgd---~~i~~~i~ik~v 134 (172)
-.|+-|+-|.+.-=-.+++..|.|..-.+.+.+ ..|.+.+... ..-++||+++|. |.+ .++++...|+++
T Consensus 38 NPiH~D~~~Ak~~g~~~viahGmlt~g~~~~~v---t~w~g~pg~v---~~~~vrF~~pv~vp~~~~G~~v~~tg~V~~~ 111 (142)
T PRK13693 38 NPIHWDDEIAKVVGLDTAIAHGMLTMGLGGGYV---TSWVGDPGAV---TEYNVRFTAVVPVPNDGKGAELVFNGRVKSV 111 (142)
T ss_pred CCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHH---HHHCCCCCEE---EEEEEEECCEEEECCCCCCCEEEEEEEEEEE
T ss_conf 844139999986489982445888999999999---8745998558---9999897533881698987599999999997
Q ss_pred ECCCCEEEEEEEEEEECCEEEEEEEEEEEEE
Q ss_conf 3078579999999999999999997106998
Q gi|254780460|r 135 LRGRVVLGAADGWVKVNGKEIYQANDLRVCL 165 (172)
Q Consensus 135 ~~~~~~~~~~~g~~~vdg~~i~~a~~l~vgl 165 (172)
...++ .+..+.++.++|+.|.----..++|
T Consensus 112 d~~~~-~v~l~l~~~~gg~~VlG~A~a~v~~ 141 (142)
T PRK13693 112 DPESK-SVTIALTATTGGKKIFGRAIASAKL 141 (142)
T ss_pred CCCCC-EEEEEEEEEECCEEEEEEEEEEEEC
T ss_conf 17788-8999999998999999999999980
No 27
>COG2030 MaoC Acyl dehydratase [Lipid metabolism]
Probab=94.92 E-value=0.31 Score=27.61 Aligned_cols=97 Identities=15% Similarity=0.092 Sum_probs=55.3
Q ss_pred EECCCCCCCCCC--CCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEEEEEEC
Q ss_conf 507865530045--568995211275788879988640123346882667630451141023379857999999889630
Q gi|254780460|r 59 MDITPNLWFFDC--HFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILR 136 (172)
Q Consensus 59 k~i~~d~wff~g--HFp~~PvmPGvL~iEa~~Ql~~~~~~~~~~~~~~~~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~ 136 (172)
..|+-|+.|.+- .|++ |+.-|.+-+-....+.. ........+...+.+++||.++|.||| +++.+.++.+...
T Consensus 50 qpiH~D~e~A~~~~~fg~-~iahG~~t~a~~~~~~~---~~~~~~~~~~~~g~~~vRF~~PV~~Gd-tl~~~~~v~~~~~ 124 (159)
T COG2030 50 NPIHLDPEAAKKTSGFGG-PIAHGMLTLALAMGLVV---AALGDPSVGANLGGDEVRFVKPVFPGD-TLRARVEVLDKRP 124 (159)
T ss_pred CCEEECHHHHHCCCCCCC-EEECHHHHHHHHHHHHH---HHCCCCCCEEEEEEEEEEECCCCCCCC-EEEEEEEEEEECC
T ss_conf 850829999832077998-85054589999999998---741467404431577779707877999-9999999964012
Q ss_pred CC-CEEEEEEEEEE-ECCEEEEEEEE
Q ss_conf 78-57999999999-99999999971
Q gi|254780460|r 137 GR-VVLGAADGWVK-VNGKEIYQAND 160 (172)
Q Consensus 137 ~~-~~~~~~~g~~~-vdg~~i~~a~~ 160 (172)
.+ ..++....++. .+|+.+...+.
T Consensus 125 ~~~~G~v~~~~~~~~~~g~~v~~~~~ 150 (159)
T COG2030 125 SKSRGLVTLRLETVNQEGELVLTLEA 150 (159)
T ss_pred CCCCCEEEEEEEEEEECCCEEEEEEE
T ss_conf 67763799999999405958101468
No 28
>cd03448 HDE_HSD HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit.
Probab=94.74 E-value=0.35 Score=27.33 Aligned_cols=89 Identities=12% Similarity=0.060 Sum_probs=49.4
Q ss_pred ECCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEEEEEECCCC
Q ss_conf 07865530045568995211275788879988640123346882667630451141023379857999999889630785
Q gi|254780460|r 60 DITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGRV 139 (172)
Q Consensus 60 ~i~~d~wff~gHFp~~PvmPGvL~iEa~~Ql~~~~~~~~~~~~~~~~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~~~~ 139 (172)
.|+-|+-|.+..=-..||+-|.+-.=....+. +..... ...-...--+++|.++|.|||.+ + +++-+ .+.
T Consensus 29 PiH~D~~~A~~agf~~~I~HGm~t~g~~~~av---~~~~~~-g~~~~~~~~~~rF~~pV~pGd~l-~--v~iw~---~~~ 98 (122)
T cd03448 29 PLHIDPAFAKAAGFPRPILHGLCTYGFAARAV---LEAFAD-GDPARFKAIKVRFSSPVFPGETL-R--TEMWK---EGN 98 (122)
T ss_pred CCCCCHHHHHHCCCCCCEEHHHHHHHHHHHHH---HHHHCC-CCCEEEEEEEEEECCCCCCCCEE-E--EEEEE---ECC
T ss_conf 43179999997399985413667999999999---986758-99603899998982653699989-9--99999---799
Q ss_pred EEEEEEEEEEECCEEEEEEE
Q ss_conf 79999999999999999997
Q gi|254780460|r 140 VLGAADGWVKVNGKEIYQAN 159 (172)
Q Consensus 140 ~~~~~~g~~~vdg~~i~~a~ 159 (172)
.+.+...+.+++++|..-.
T Consensus 99 -~v~~~~~~~~~~~vVi~~g 117 (122)
T cd03448 99 -RVIFQTKVVERDVVVLSNG 117 (122)
T ss_pred -EEEEEEEEEECCCEEEECC
T ss_conf -9999999964890999897
No 29
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=94.61 E-value=0.38 Score=27.14 Aligned_cols=113 Identities=10% Similarity=0.058 Sum_probs=70.0
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCE
Q ss_conf 12256899997184413423578875078655300455689952112757888799886401233468826676304511
Q gi|254780460|r 34 MLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIK 113 (172)
Q Consensus 34 ~lmiDrV~~i~~~~g~~g~G~i~aek~i~~d~wff~gHFp~~PvmPGvL~iEa~~Ql~~~~~~~~~~~~~~~~~~~~~vk 113 (172)
==.|-++++++++ .++ .....++++.=|= ...+.-|-.+ .||+-++...-. +......+..++|
T Consensus 71 ~EviGelidle~~--~~a----iSil~it~emvf~-----~t~iargh~l---fAQAnSLAvAvi--~~~~~lt~~A~Vr 134 (185)
T PRK04424 71 EEVVGELIDLELG--RSA----ISILEITEEMVFS-----KTQIARGHHL---FAQANSLAVAVI--DAELALTGKANIR 134 (185)
T ss_pred HHEEEEEEEECCC--CEE----EEEEECCHHHEEC-----CCCEEEHHEE---HHHHHHHHHHHC--CCCEEEEEEEEEE
T ss_conf 3415562663279--608----8889856667433-----3873211100---777763688613--9954999987899
Q ss_pred EEEEECCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCEEEEEEEEEEEEEE
Q ss_conf 41023379857999999889630785799999999999999999971069986
Q gi|254780460|r 114 FRGMVTPDCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLRVCLT 166 (172)
Q Consensus 114 fr~~V~Pgd~~i~~~i~ik~v~~~~~~~~~~~g~~~vdg~~i~~a~~l~vgl~ 166 (172)
|+.||..||+++ -+..|.+.. ..-.+.....+|+++.|++.+-+.+.+.
T Consensus 135 F~rPV~~Gd~vv-AkA~V~~~~---gnk~~V~V~s~V~~e~VF~G~F~~~~~~ 183 (185)
T PRK04424 135 FKRPVKLGERVV-AKAEVVRVT---DNKYIVEVKSYVKDELVFKGKFIMYASS 183 (185)
T ss_pred ECCCCCCCCEEE-EEEEEEEEC---CCEEEEEEEEEECCEEEEEEEEEEEEEC
T ss_conf 931056698999-999999972---9999999999989999999999999917
No 30
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Probab=92.58 E-value=0.86 Score=25.01 Aligned_cols=65 Identities=12% Similarity=0.033 Sum_probs=46.8
Q ss_pred EEEECCCEEEEEECCCCCEEEEEEEEEEEECC-CCEEEEEEEEEEE-CCEEEEEEEEEEEEEECCCCC
Q ss_conf 76304511410233798579999998896307-8579999999999-999999997106998617688
Q gi|254780460|r 106 AVSVSNIKFRGMVTPDCKLVEYGIDFKKILRG-RVVLGAADGWVKV-NGKEIYQANDLRVCLTIDRGV 171 (172)
Q Consensus 106 ~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~~-~~~~~~~~g~~~v-dg~~i~~a~~l~vgl~~de~~ 171 (172)
.-+-++.+|+++|..||++ +.+++|..+... +.-++....++.- +|++|+++..--++=..|++-
T Consensus 85 VHgdQ~F~yhRPI~AGD~L-~~~~~v~svr~~~G~diittr~~vtd~~Ge~V~t~~tTLv~R~gd~~~ 151 (166)
T PRK13691 85 VQVDQRFVFHKPVLAGDKL-WARMDIHSVDERFGADIVVTRNVCTNDDGEVVMEAYTTLMGQQGDNSA 151 (166)
T ss_pred EECCCEEEEECCCCCCCEE-EEEEEEEEEEECCCCEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCC
T ss_conf 5513069998870169999-999999983100893189998899889999999999999986377642
No 31
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=91.04 E-value=1.3 Score=23.98 Aligned_cols=59 Identities=8% Similarity=0.035 Sum_probs=42.2
Q ss_pred EEEECCCEEEEEECCCCCEEEEEEEEEEEECCC-CEEEEEEEEEEE-CCEEEEEEEEEEEEE
Q ss_conf 763045114102337985799999988963078-579999999999-999999997106998
Q gi|254780460|r 106 AVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGR-VVLGAADGWVKV-NGKEIYQANDLRVCL 165 (172)
Q Consensus 106 ~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~~~-~~~~~~~g~~~v-dg~~i~~a~~l~vgl 165 (172)
.-+-++-.|+++|.+||. ++...+|..+.+.+ .-++....++.- +|++|+++..--+.=
T Consensus 85 vHgeQ~f~yhrPi~AGD~-Lt~~~~I~~ir~~~G~d~v~~~~~vt~~~Ge~V~t~~sTLv~R 145 (159)
T PRK13692 85 VQVDQVLKFEKPIVAGDK-LYCDVYVDSVREAHGTQIIVTKNIVTNEAGDVVQETYTTLAGR 145 (159)
T ss_pred EECCCEEEEECCCCCCCE-EEEEEEEEEEEECCCCEEEEEEEEEECCCCCEEEEEEEEEEEE
T ss_conf 864724899898248989-9999999986533991699999999989999999999999997
No 32
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=90.64 E-value=1.4 Score=23.75 Aligned_cols=97 Identities=13% Similarity=0.096 Sum_probs=54.9
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCC-CCCEEEEEECCCEEEEEECCCCCEEEEEEEE
Q ss_conf 357887507865530045568995211275788879988640123346-8826676304511410233798579999998
Q gi|254780460|r 53 GVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGE-LGKGRAVSVSNIKFRGMVTPDCKLVEYGIDF 131 (172)
Q Consensus 53 G~i~aek~i~~d~wff~gHFp~~PvmPGvL~iEa~~Ql~~~~~~~~~~-~~~~~~~~~~~vkfr~~V~Pgd~~i~~~i~i 131 (172)
|+++.+..+++ ++.. + ..++=|-. +=+++..+..+...... ........--+++|++++.++ .++.+.+
T Consensus 12 g~~~~~~~~~~--~~~n---~-~g~~HGG~-~~~l~D~~~g~~~~~~~~~~~~~vt~~l~i~fl~p~~~~--~l~~~a~- 81 (113)
T cd03443 12 GRVVLRLPVRP--RHLN---P-GGIVHGGA-IATLADTAGGLAALSALPPGALAVTVDLNVNYLRPARGG--DLTARAR- 81 (113)
T ss_pred CEEEEEEECCH--HHCC---C-CCCEEHHH-HHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCC--EEEEEEE-
T ss_conf 99999999898--9959---9-99480788-778887889999985156650207621579997578997--6999999-
Q ss_pred EEEECCCCEEEEEEEEEEEC-CEEEEEEEEE
Q ss_conf 89630785799999999999-9999999710
Q gi|254780460|r 132 KKILRGRVVLGAADGWVKVN-GKEIYQANDL 161 (172)
Q Consensus 132 k~v~~~~~~~~~~~g~~~vd-g~~i~~a~~l 161 (172)
+.+.++.+++.+++++.+ |+++++++..
T Consensus 82 --v~~~g~~~~~~~~~i~~~~g~~~A~~~~~ 110 (113)
T cd03443 82 --VVKLGRRLAVVEVEVTDEDGKLVATARGT 110 (113)
T ss_pred --EEEECCCEEEEEEEEEECCCCEEEEEEEE
T ss_conf --99958889999999995999999999999
No 33
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=89.84 E-value=1.6 Score=23.35 Aligned_cols=92 Identities=9% Similarity=0.038 Sum_probs=54.0
Q ss_pred EECCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEEEEEECCC
Q ss_conf 50786553004556899521127578887998864012334688266763045114102337985799999988963078
Q gi|254780460|r 59 MDITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGR 138 (172)
Q Consensus 59 k~i~~d~wff~gHFp~~PvmPGvL~iEa~~Ql~~~~~~~~~~~~~~~~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~~~ 138 (172)
..|+.|+-|.+..=..+++..|.+..--+.+++.-++ +.. ..+. --++||+++|.||| ++++..+|++. +.
T Consensus 27 npiH~D~~~A~~~G~~~~i~hG~l~~~~~~~~l~~w~---g~~--~~l~-~~~~rf~~pv~~Gd-~lt~~g~V~~~--~~ 97 (123)
T cd03455 27 HRIHHDRDYARAVGYPDLYVNGPTLAGLVIRYVTDWA---GPD--ARVK-SFAFRLGAPLYAGD-TLRFGGRVTAK--RD 97 (123)
T ss_pred CCCCCCHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHC---CCC--CEEE-EEEEEEECCEECCC-EEEEEEEEEEE--CC
T ss_conf 8652199999863999727737899999999999764---998--4599-99999767511899-89999999997--68
Q ss_pred CEEEEEEEEEEE-CCEEEEEEE
Q ss_conf 579999999999-999999997
Q gi|254780460|r 139 VVLGAADGWVKV-NGKEIYQAN 159 (172)
Q Consensus 139 ~~~~~~~g~~~v-dg~~i~~a~ 159 (172)
...+..+..+.. +|+.+++.+
T Consensus 98 ~~~v~l~~~~~nq~G~~v~~G~ 119 (123)
T cd03455 98 DEVVTVELWARNSEGDHVMAGT 119 (123)
T ss_pred CCEEEEEEEEECCCCCEEEEEE
T ss_conf 8669999999989999999999
No 34
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN; InterPro: IPR011966 This enzyme is proposed to act in the ring-opening step of phenylacetic acid degradation which follows ligation of the acid with coenzyme A (by PaaF) and hydroxylation by a multicomponent non-heme iron hydroxylase complex (PaaGHIJK). Gene symbols have been standardised in . This enzyme is related to aldehyde dehydrogenases..
Probab=88.25 E-value=1.6 Score=23.38 Aligned_cols=113 Identities=22% Similarity=0.234 Sum_probs=69.1
Q ss_pred CCCCHHHHHHHCC--CCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEHHHH
Q ss_conf 5589889998418--83557998889986412256899997184413423578875078655300455689952112757
Q gi|254780460|r 6 SSYTYEEILRCGE--GEMFGEGNAQLPKPPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLG 83 (172)
Q Consensus 6 ~~f~~~~i~~~~~--g~~fg~~~~rLP~~p~lmiDrV~~i~~~~g~~g~G~i~aek~i~~d~wff~gHFp~~PvmPGvL~ 83 (172)
=.-|.+||.+||. ||.| |--+|++-- ..-+|| +.-|.=|=|+
T Consensus 560 R~vt~~dI~~FA~~sGD~F-----------YAH~De~AA--------------------~~~P~F-----g~RVaHGYlv 603 (690)
T TIGR02278 560 RTVTLADIVEFAELSGDTF-----------YAHMDEIAA--------------------KESPFF-----GKRVAHGYLV 603 (690)
T ss_pred CCCCHHHHHHHHHCCCCCC-----------CCHHHHHHH--------------------HHCCCC-----CCCCHHHHHH
T ss_conf 7427899999986058842-----------001689998--------------------438675-----8720268889
Q ss_pred HHHHHHHHHHHCCCCCCCCCEE-EEEECCCEEEEEECCCCCEEEEEEEEEEEECCC-C-------EEEEEEEEEEE-CCE
Q ss_conf 8887998864012334688266-763045114102337985799999988963078-5-------79999999999-999
Q gi|254780460|r 84 LDALWQLTGFFLGWLGELGKGR-AVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGR-V-------VLGAADGWVKV-NGK 153 (172)
Q Consensus 84 iEa~~Ql~~~~~~~~~~~~~~~-~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~~~-~-------~~~~~~g~~~v-dg~ 153 (172)
+-+-|-|- .. ..++=.. .-+.++.||-.||.||| ++..++++|+..-++ . ..+.=+.+++. ||+
T Consensus 604 lS~AAGLF---Vd--p~pGPvLANYGLe~LRFl~PV~~dD-si~V~LT~Krk~p~~~~~~gekPtG~V~W~~ev~NQ~~~ 677 (690)
T TIGR02278 604 LSAAAGLF---VD--PAPGPVLANYGLENLRFLEPVKPDD-SIQVRLTVKRKTPRKEKEYGEKPTGVVEWDVEVVNQNGE 677 (690)
T ss_pred HHHHHCCC---CC--CCCCCEEEECCCCCCCCCCCCCCCC-CEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCC
T ss_conf 99986053---26--8898547313677663035679988-458998422037777866677887447887899746983
Q ss_pred EEEEEEE
Q ss_conf 9999971
Q gi|254780460|r 154 EIYQAND 160 (172)
Q Consensus 154 ~i~~a~~ 160 (172)
+|++.+=
T Consensus 678 pVA~Y~v 684 (690)
T TIGR02278 678 PVASYDV 684 (690)
T ss_pred EEEEEEH
T ss_conf 5776525
No 35
>pfam03061 4HBT Thioesterase superfamily. This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (EC 3.1.2.23) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters.
Probab=88.22 E-value=2.1 Score=22.66 Aligned_cols=73 Identities=16% Similarity=0.036 Sum_probs=41.9
Q ss_pred EHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCEEE
Q ss_conf 12757888799886401233468826676304511410233798579999998896307857999999999999999
Q gi|254780460|r 79 PGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEI 155 (172)
Q Consensus 79 PGvL~iEa~~Ql~~~~~~~~~~~~~~~~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~~~~~~~~~~g~~~vdg~~i 155 (172)
-|-.+...+=.+++.++...............++.|++++.+||. ++.+.+ +.+.++...+.+++++.++...
T Consensus 5 hGG~~~~~~D~a~~~~~~~~~~~~~~~~t~~~~i~f~~p~~~gd~-l~~~~~---v~~~g~~~~~~~~~i~~~~~~~ 77 (79)
T pfam03061 5 HGGVYLALADEAAGAAARSLGGSGQVVVVVELNIDFLRPARLGDV-LTVEAR---VVRLGRTSAVVEVEVRDEDGRL 77 (79)
T ss_pred EHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCCE-EEEEEE---EEECCCCEEEEEEEEEECCCCE
T ss_conf 589999999999999999757889743799999899996057988-999999---9986873999999999589969
No 36
>COG0824 FcbC Predicted thioesterase [General function prediction only]
Probab=76.88 E-value=6.2 Score=19.91 Aligned_cols=63 Identities=6% Similarity=-0.046 Sum_probs=44.2
Q ss_pred CEEEEEECCCEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCEEEEEEEEEEEEEECCC
Q ss_conf 2667630451141023379857999999889630785799999999999999999971069986176
Q gi|254780460|r 103 KGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLRVCLTIDR 169 (172)
Q Consensus 103 ~~~~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~~~~~~~~~~g~~~vdg~~i~~a~~l~vgl~~de 169 (172)
......-..+.|++++..||. ++.+..+.++. ..-..+.-+++.+++++++++-..|.+-.+.
T Consensus 55 ~~~~v~~~~i~y~~p~~~~d~-l~v~~~v~~~~---~~s~~~~~~i~~~~~l~a~~~~~~V~v~~~~ 117 (137)
T COG0824 55 IAFVVVEAEIDYLRPARLGDV-LTVRTRVEELG---GKSLTLGYEIVNEDELLATGETTLVCVDLKT 117 (137)
T ss_pred EEEEEEEEEEEECCCCCCCCE-EEEEEEEEEEC---CEEEEEEEEEEECCEEEEEEEEEEEEEECCC
T ss_conf 479999999899756648989-99999999706---6399999999949999999999999998899
No 37
>pfam03756 AfsA A-factor biosynthesis repeat. The AfsA family are key enzymes in A-factor biosynthesis, which is essential for streptomycin production and resistance.
Probab=75.21 E-value=5.1 Score=20.41 Aligned_cols=39 Identities=26% Similarity=0.245 Sum_probs=30.5
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHH
Q ss_conf 57887507865530045568995211275788879988640
Q gi|254780460|r 54 VVRAEMDITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFF 94 (172)
Q Consensus 54 ~i~aek~i~~d~wff~gHFp~~PvmPGvL~iEa~~Ql~~~~ 94 (172)
...+.-.++.++.||--| +++. .||.|++|++=|++...
T Consensus 21 ~~~~~~~~p~~H~~~~~h-~~~h-~~~mll~Ea~RQ~~~~~ 59 (74)
T pfam03756 21 RFRWTLRVPRDHPFLFDH-PSDH-VPGMLLLEAARQAAIAL 59 (74)
T ss_pred EEEEEEECCCCCCCCCCC-CCCC-CCHHHHHHHHHHHHHHH
T ss_conf 479999838988640589-8877-47156999999999998
No 38
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial; InterPro: IPR012803 Members of this family represent the alpha subunit of the mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (4.2.1.17 from EC) and 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC). Some characterization of these proteins has been done in human (P40939 from SWISSPROT), pig (Q29554 from SWISSPROT) and rat (Q64428 from SWISSPROT). The beta subunit has acetyl-CoA C-acyltransferase (2.3.1.16 from EC) activity.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0004300 enoyl-CoA hydratase activity, 0006635 fatty acid beta-oxidation, 0005739 mitochondrion, 0016507 fatty acid beta-oxidation multienzyme complex.
Probab=64.23 E-value=3.2 Score=21.59 Aligned_cols=19 Identities=21% Similarity=0.350 Sum_probs=11.8
Q ss_pred CCCCCCCCCCCCCCEEEEE
Q ss_conf 5579988899864122568
Q gi|254780460|r 21 MFGEGNAQLPKPPMLMFHR 39 (172)
Q Consensus 21 ~fg~~~~rLP~~p~lmiDr 39 (172)
|||-+|+..-+.||+++|.
T Consensus 682 VFGlGFPPf~GGPFRfvD~ 700 (740)
T TIGR02441 682 VFGLGFPPFLGGPFRFVDL 700 (740)
T ss_pred ECCCCCCCCCCCCCCHHHH
T ss_conf 6266788888565111113
No 39
>KOG3328 consensus
Probab=58.05 E-value=15 Score=17.56 Aligned_cols=100 Identities=15% Similarity=0.122 Sum_probs=59.0
Q ss_pred CEEEEEEEECCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEE
Q ss_conf 23578875078655300455689952112757888799886401233468826676304511410233798579999998
Q gi|254780460|r 52 QGVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDCKLVEYGIDF 131 (172)
Q Consensus 52 ~G~i~aek~i~~d~wff~gHFp~~PvmPGvL~iEa~~Ql~~~~~~~~~~~~~~~~~~~~~vkfr~~V~Pgd~~i~~~i~i 131 (172)
.|++++|..|+++.-=..+--.+--++ .++|.++-++ .++....... ...--++.|-.....|+.+ +|+-
T Consensus 36 ~Grv~ce~kV~~~~~N~~k~LHGG~tA---tLvD~i~s~~-~~~~~~~~~g---vsvdLsvsyL~~AklGe~l---~i~a 105 (148)
T KOG3328 36 PGRVSCELKVTPDHLNRFKTLHGGATA---TLVDLITSAA-LLMTSGFKPG---VSVDLSVSYLSSAKLGEEL---EIEA 105 (148)
T ss_pred CCEEEEEEEECHHHCCCCCCCCCCCHH---HHHHHHHHHH-HHHCCCCCCC---EEEEEEHHHCCCCCCCCEE---EEEE
T ss_conf 863899999587995764653466110---1898876678-8852688881---4999885551646799769---9998
Q ss_pred EEEECCCCEEEEEEEEEEE--CCEEEEEEEEEE
Q ss_conf 8963078579999999999--999999997106
Q gi|254780460|r 132 KKILRGRVVLGAADGWVKV--NGKEIYQANDLR 162 (172)
Q Consensus 132 k~v~~~~~~~~~~~g~~~v--dg~~i~~a~~l~ 162 (172)
.+.+.+..+++-+.+.+. +|+++++-+-..
T Consensus 106 -~~vr~Gk~la~t~v~l~~K~t~kiia~grhtk 137 (148)
T KOG3328 106 -TVVRVGKTLAFTDVELRRKSTGKIIAKGRHTK 137 (148)
T ss_pred -EEEECCCEEEEEEEEEEECCCCEEEEECCEEE
T ss_conf -98405863789999999857881998511489
No 40
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=57.51 E-value=4.6 Score=20.67 Aligned_cols=35 Identities=20% Similarity=0.425 Sum_probs=25.6
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCC-CC-----CCC-CCCCEEEEE
Q ss_conf 88655898899984188355799-88-----899-864122568
Q gi|254780460|r 3 NRKSSYTYEEILRCGEGEMFGEG-NA-----QLP-KPPMLMFHR 39 (172)
Q Consensus 3 ~~~~~f~~~~i~~~~~g~~fg~~-~~-----rLP-~~p~lmiDr 39 (172)
.+++.||.|.|.+. |=|=|=+ |. |-| -||+.|+|.
T Consensus 285 ~qRT~yDLEMl~e~--G~C~GIENYSRhl~GR~~GEpP~tLlDY 326 (667)
T TIGR00631 285 KQRTEYDLEMLREM--GYCSGIENYSRHLSGRKPGEPPYTLLDY 326 (667)
T ss_pred HHHHHHHHHHHHHC--CCCCCCCHHCCCCCCCCCCCCCCCHHHH
T ss_conf 88688778887506--7337700000021677763159647765
No 41
>COG2050 PaaI HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=48.21 E-value=22 Score=16.60 Aligned_cols=104 Identities=17% Similarity=0.045 Sum_probs=60.4
Q ss_pred EEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCC-CEEEEEECCCEEEEE
Q ss_conf 8999971844134235788750786553004556899521127578887998864012334688-266763045114102
Q gi|254780460|r 39 RITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELG-KGRAVSVSNIKFRGM 117 (172)
Q Consensus 39 rV~~i~~~~g~~g~G~i~aek~i~~d~wff~gHFp~~PvmPGvL~iEa~~Ql~~~~~~~~~~~~-~~~~~~~~~vkfr~~ 117 (172)
+++++++ |+++.+..++++.-- ...++=|-.+. |++-.++.+........ ......-.++.|.++
T Consensus 27 ~~~~~~~-------g~~~~~l~~~~~~~~------~~G~~HGG~i~-alaD~a~~~a~~~~~~~~~~~~ti~l~i~flr~ 92 (141)
T COG2050 27 EIEEIEE-------GEAEATLPVDPELLN------PGGILHGGVIA-ALADSAAGLAANSLLGVVALAVTLELNINFLRP 92 (141)
T ss_pred EEEEECC-------CEEEEEEECCHHHCC------CCCCEEHHHHH-HHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECC
T ss_conf 9999638-------828999986888818------88815399999-999999999972026765205789999998537
Q ss_pred ECCCCCEEEEEEEEEEEECCCCEEEEEEEEEEE--CCEEEEEEEEE
Q ss_conf 337985799999988963078579999999999--99999999710
Q gi|254780460|r 118 VTPDCKLVEYGIDFKKILRGRVVLGAADGWVKV--NGKEIYQANDL 161 (172)
Q Consensus 118 V~Pgd~~i~~~i~ik~v~~~~~~~~~~~g~~~v--dg~~i~~a~~l 161 (172)
+.+|+ ++.+.++.+ .++...+.+.+++. +++++++++.-
T Consensus 93 ~~~g~--v~a~a~v~~---~G~~~~v~~i~v~~~~~~~lva~~~~t 133 (141)
T COG2050 93 VKEGD--VTAEARVLH---LGRRVAVVEIEVKNDEGGRLVAKGTGT 133 (141)
T ss_pred CCCCC--EEEEEEEEE---ECCEEEEEEEEEEECCCCEEEEEEEEE
T ss_conf 77896--799999998---275799999999978896799999999
No 42
>TIGR00979 fumC_II fumarate hydratase, class II; InterPro: IPR005677 Fumarase C catalyzes the stereospecific interconversion of fumarate to L-malate as part of the metabolic citric acid or Kreb's cycle. The recent three-dimensional structure of fumarase C from Escherichia coli has identified a binding site for anions which is generated by side chains from three of the four subunits within the tetramer. These same side chains are found in the three most highly conserved regions within the class II fumarate hydratase family. Putative fumarases from several species (Mycobacterium tuberculosis, Streptomyces coelicolor, Pseudomonas aeruginosa) branch deeply, although within the same branch of a phylogenetic tree rooted by aspartate ammonia-lyase sequences.; GO: 0004333 fumarate hydratase activity, 0006106 fumarate metabolic process, 0045239 tricarboxylic acid cycle enzyme complex.
Probab=48.17 E-value=11 Score=18.45 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=23.9
Q ss_pred EEEECCCCCCCCCCCCCCCCEEEHH---HHHHHHHHHHH
Q ss_conf 8750786553004556899521127---57888799886
Q gi|254780460|r 57 AEMDITPNLWFFDCHFKNDPVMPGC---LGLDALWQLTG 92 (172)
Q Consensus 57 aek~i~~d~wff~gHFp~~PvmPGv---L~iEa~~Ql~~ 92 (172)
+|-.|++||+ |.-||||= -|+|||-+.|.
T Consensus 305 GEl~~PENEP-------GSSIMPGKVNPTQ~EalTMVC~ 336 (459)
T TIGR00979 305 GELFLPENEP-------GSSIMPGKVNPTQCEALTMVCV 336 (459)
T ss_pred CCCCCCCCCC-------CCCCCCCCCCCCHHHHHHHHHH
T ss_conf 0256777875-------7876978987104358899888
No 43
>smart00826 PKS_DH PKS_DH.
Probab=48.16 E-value=22 Score=16.60 Aligned_cols=70 Identities=16% Similarity=0.098 Sum_probs=42.1
Q ss_pred EEEEEECCCC-CCCCCCCC-CCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEE-ECCCCCEEEEEEEE
Q ss_conf 7887507865-53004556-899521127578887998864012334688266763045114102-33798579999998
Q gi|254780460|r 55 VRAEMDITPN-LWFFDCHF-KNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGM-VTPDCKLVEYGIDF 131 (172)
Q Consensus 55 i~aek~i~~d-~wff~gHF-p~~PvmPGvL~iEa~~Ql~~~~~~~~~~~~~~~~~~~~~vkfr~~-V~Pgd~~i~~~i~i 131 (172)
.+.+..++.+ .+|.+.|- .+.+|+||+-.+|....++.-.... . ...+.++.|.++ ++|.+..+..++.+
T Consensus 16 ~~w~~~ls~~~~p~L~DH~v~G~~v~Pga~ylemal~Aa~~~~~~----~---~~~l~dv~f~~pL~l~~~~~~~v~~~l 88 (167)
T smart00826 16 VVFTGRLSLRTHPWLADHRVGGTVVLPGAAYVEMALAAADEVGCG----A---AVRLEELTLEAPLVLPEDGAVEVQVVV 88 (167)
T ss_pred EEEEEEECCCCCCCCCCCEECCEEECCHHHHHHHHHHHHHHHCCC----C---CEEEEEEEEECCCCCCCCCCEEEEEEE
T ss_conf 799999778889600277858877524699999999999986599----8---669998698158574899878999999
No 44
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=47.11 E-value=23 Score=16.50 Aligned_cols=100 Identities=13% Similarity=-0.028 Sum_probs=53.9
Q ss_pred ECCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCC---CCCCCEEEEEECCCEEEEEECCCCCEEEEEEEEEEEEC
Q ss_conf 078655300455689952112757888799886401233---46882667630451141023379857999999889630
Q gi|254780460|r 60 DITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWL---GELGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILR 136 (172)
Q Consensus 60 ~i~~d~wff~gHFp~~PvmPGvL~iEa~~Ql~~~~~~~~---~~~~~~~~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~ 136 (172)
.|.+.+==..|| -+.+... .+.-||-.+.+--..... ...+......-..++|++++..+|+ ++.++.+.++.+
T Consensus 6 ~V~~~d~D~~gh-v~~~~y~-~~~~~a~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~y~~~~~~~d~-i~i~~~i~~~~~ 82 (110)
T cd00586 6 RVRFGDTDAAGH-VNNARYL-RYFEEAREEFLRELGLGYDELEEQGLGLVVVELEIDYLRPLRLGDR-LTVETRVLRLGR 82 (110)
T ss_pred EECHHHCCCCCE-EEHHHHH-HHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEEEEEEECCCCCCCCE-EEEEEEEEEECC
T ss_conf 949888888881-1279999-9999999999998354377898579518978758898557789969-999999998087
Q ss_pred CCCEEEEEEEEEEE-CCEEEEEEEEEEEEE
Q ss_conf 78579999999999-999999997106998
Q gi|254780460|r 137 GRVVLGAADGWVKV-NGKEIYQANDLRVCL 165 (172)
Q Consensus 137 ~~~~~~~~~g~~~v-dg~~i~~a~~l~vgl 165 (172)
........++. +|+++++++-..|.+
T Consensus 83 ---~~~~~~~~~~~~~g~~~~~~~~~~v~~ 109 (110)
T cd00586 83 ---KSFTFEQEIFREDGELLATAETVLVCV 109 (110)
T ss_pred ---EEEEEEEEEEECCCEEEEEEEEEEEEE
T ss_conf ---899999999969985999999999998
No 45
>pfam05179 CDC73 RNA pol II accessory factor, Cdc73 family.
Probab=42.69 E-value=15 Score=17.56 Aligned_cols=57 Identities=21% Similarity=0.300 Sum_probs=36.2
Q ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 412256899997184413423578875078655300455689952112757888799886401233468
Q gi|254780460|r 33 PMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGEL 101 (172)
Q Consensus 33 p~lmiDrV~~i~~~~g~~g~G~i~aek~i~~d~wff~gHFp~~PvmPGvL~iEa~~Ql~~~~~~~~~~~ 101 (172)
+|+.||.+..+.++-+ . +++|. -++.-+|-|++--..+| .|-+...+++|+.+.++.
T Consensus 176 ~y~VVDn~~~~~pe~W--~--RVVAV-F~~G~~WQFK~wp~~~P-------~~lF~~v~Gf~l~~~~~~ 232 (273)
T pfam05179 176 RYRVVDNPEKLKPDDW--D--RVVAV-FVTGPAWQFKGWPWNSP-------VDIFHKIKGFHLHFDGDK 232 (273)
T ss_pred EEEEECCHHHCCCCCC--C--EEEEE-EECCCHHHHCCCCCCCH-------HHHHHHCEEEEEEECCCC
T ss_conf 7999528342791445--3--68999-96284252168998998-------999754238999826987
No 46
>pfam06587 DUF1137 Protein of unknown function (DUF1137). This family consists of several hypothetical proteins specific to Chlamydia species. The function of this family is unknown.
Probab=40.06 E-value=13 Score=17.91 Aligned_cols=35 Identities=31% Similarity=0.651 Sum_probs=24.4
Q ss_pred CCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEE
Q ss_conf 99864122568999971844134235788750786553004556899521
Q gi|254780460|r 29 LPKPPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVM 78 (172)
Q Consensus 29 LP~~p~lmiDrV~~i~~~~g~~g~G~i~aek~i~~d~wff~gHFp~~Pvm 78 (172)
-|.||||=|.++ |.. ..-++|++-||.|| .+...|
T Consensus 43 ~~aPPFLKIKKl-------gV~-------KqI~SPekqfF~C~-iDKSCM 77 (159)
T pfam06587 43 TPAPPFLKIKKL-------GVR-------KQIISPEKQFFYCT-IDKSCM 77 (159)
T ss_pred CCCCCCEEEEEC-------CCE-------EEECCCHHHEEEEE-ECCHHH
T ss_conf 789981476661-------520-------03258268648867-740453
No 47
>TIGR02918 TIGR02918 conserved hypothetical protein TIGR02918; InterPro: IPR014267 Members of this entry are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus..
Probab=37.47 E-value=31 Score=15.78 Aligned_cols=45 Identities=31% Similarity=0.474 Sum_probs=29.2
Q ss_pred CCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEE-----EE----CCCCCCCCEEE-EEE
Q ss_conf 89889998418835579988899864122568999-----97----18441342357-887
Q gi|254780460|r 8 YTYEEILRCGEGEMFGEGNAQLPKPPMLMFHRITQ-----IS----ETGGNYNQGVV-RAE 58 (172)
Q Consensus 8 f~~~~i~~~~~g~~fg~~~~rLP~~p~lmiDrV~~-----i~----~~~g~~g~G~i-~ae 58 (172)
|+|+|+.|+---++ .|-+..++.|||-++ |= .+.|+..+|.| |||
T Consensus 198 YsK~eliayFl~~L------~LT~~Di~IlDR~~~dknliiGQ~Vl~Nkg~AklgVVvHAE 252 (511)
T TIGR02918 198 YSKQELIAYFLKQL------NLTKKDIIILDRSTGDKNLIIGQAVLENKGPAKLGVVVHAE 252 (511)
T ss_pred CCHHHHHHHHHHHC------CCCCCCEEEEECCCCCCEEEEEEEEEEECCCEEEEEEEEEE
T ss_conf 18699999999960------69856689997368993058713888750870289999746
No 48
>PRK10800 acyl-CoA thioester hydrolase YbgC; Provisional
Probab=34.75 E-value=37 Score=15.34 Aligned_cols=62 Identities=13% Similarity=0.095 Sum_probs=38.8
Q ss_pred CCEEEEEECCCEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEEEEE-ECCEEEEEEEEEEEEEEC
Q ss_conf 826676304511410233798579999998896307857999999999-999999999710699861
Q gi|254780460|r 102 GKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVVLGAADGWVK-VNGKEIYQANDLRVCLTI 167 (172)
Q Consensus 102 ~~~~~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~~~~~~~~~~g~~~-vdg~~i~~a~~l~vgl~~ 167 (172)
+......-.+++|+.++.=+|. ++.+..+.++ ++.-..++-+++ .||+++++++-..|.+-.
T Consensus 51 ~~~~vV~~~~i~Y~~pa~~~D~-l~I~~~i~~~---~~~s~~~~~~i~~~d~~l~a~a~~~~V~vd~ 113 (130)
T PRK10800 51 RVAFVVRKMTVEYYAPARLDDM-LEVQTEITSM---RGTSLVFTQRIVNAENTLLNEAEVLIVCVDP 113 (130)
T ss_pred CCEEEEEEEEEEECCCCCCCCE-EEEEEEEEEC---CCEEEEEEEEEECCCCEEEEEEEEEEEEEEC
T ss_conf 9948999998694473437989-9999999966---9779999999992899799999999999999
No 49
>cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.
Probab=31.04 E-value=42 Score=14.97 Aligned_cols=57 Identities=21% Similarity=0.135 Sum_probs=34.8
Q ss_pred CEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEEEEE
Q ss_conf 52112757888799886401233468826676304511410233798579999998896
Q gi|254780460|r 76 PVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKI 134 (172)
Q Consensus 76 PvmPGvL~iEa~~Ql~~~~~~~~~~~~~~~~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v 134 (172)
..+=|--+++-+-.+++..+ ...-.......+++++.|+.++..|| .+.+.-+|..+
T Consensus 23 g~l~GG~ll~~~d~~a~~~a-~~~~~~~~vt~~vd~i~F~~pv~~Gd-~v~~~~~v~~~ 79 (123)
T cd03442 23 GTIFGGWLLEWMDELAGIAA-YRHAGGRVVTASVDRIDFLKPVRVGD-VVELSARVVYT 79 (123)
T ss_pred CEEEHHHHHHHHHHHHHHHH-HHHCCCCEEEEEECCEEECCCCCCCC-EEEEEEEEEEE
T ss_conf 74868999999999999999-99709946999988689912354797-99999999971
No 50
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=29.63 E-value=45 Score=14.82 Aligned_cols=59 Identities=12% Similarity=-0.086 Sum_probs=35.6
Q ss_pred HHHHCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCE
Q ss_conf 864012334688266763045114102337985799999988963078579999999999999
Q gi|254780460|r 91 TGFFLGWLGELGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVVLGAADGWVKVNGK 153 (172)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~~~~~~~~~~g~~~vdg~ 153 (172)
++.......-.+...-.+++.+.|..+|.-|| ++.+...+..+ ++.-.....++|+.+-
T Consensus 43 ~a~i~A~~~a~~~vVTasvd~v~F~~Pv~vGd-~v~~~a~v~~~---GrTSm~V~Vev~~~~~ 101 (157)
T COG1607 43 AAAIAASRHAGGRVVTASVDSVDFKKPVRVGD-IVCLYARVVYT---GRTSMEVGVEVWAEDI 101 (157)
T ss_pred HHHHHHHHHHCCEEEEEEECEEEECCCCCCCC-EEEEEEEEEEC---CCCCEEEEEEEEEECC
T ss_conf 99999999849907999953088726230496-89999999544---7642899999998326
No 51
>KOG1206 consensus
Probab=29.21 E-value=21 Score=16.81 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=13.5
Q ss_pred ECCCEEEEEECCCCCE
Q ss_conf 0451141023379857
Q gi|254780460|r 109 VSNIKFRGMVTPDCKL 124 (172)
Q Consensus 109 ~~~vkfr~~V~Pgd~~ 124 (172)
..+++|+++|.||+.+
T Consensus 218 ~~kvrF~spV~pGdtl 233 (272)
T KOG1206 218 AQKVRFSSPVGPGDTL 233 (272)
T ss_pred EEEEEECCCCCCCHHH
T ss_conf 0255413787786008
No 52
>COG5496 Predicted thioesterase [General function prediction only]
Probab=28.81 E-value=46 Score=14.74 Aligned_cols=72 Identities=19% Similarity=0.197 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCEEEEEEEEEEE
Q ss_conf 88879988640123346882667630451141023379857999999889630785799999999999999999971069
Q gi|254780460|r 84 LDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLRV 163 (172)
Q Consensus 84 iEa~~Ql~~~~~~~~~~~~~~~~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~~~~~~~~~~g~~~vdg~~i~~a~~l~v 163 (172)
-+|+.++++=|+-. +....+. --.++.-..+.||. +++..+.+.++..++ +.|+..+..+|..|-+++--.+
T Consensus 41 E~a~~el~~~~Ld~-g~ttVG~---ev~vrHla~~~~G~-~V~i~~~l~~v~Gr~---v~f~i~a~~~~~~Ig~g~h~R~ 112 (130)
T COG5496 41 ENASYELLQPYLDN-GETTVGT---EVLVRHLAATPPGL-TVTIGARLEKVEGRK---VKFRIIAMEGGDKIGEGTHTRV 112 (130)
T ss_pred HHHHHHHHHHHCCC-CCCEEEE---EEEEEECCCCCCCC-EEEEEEEEEEEECCE---EEEEEEEEECCCEEEEEEEEEE
T ss_conf 99999998752767-7630558---98864414789997-599999999985638---8999999308858714579999
No 53
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=25.25 E-value=53 Score=14.35 Aligned_cols=57 Identities=16% Similarity=0.137 Sum_probs=35.2
Q ss_pred EEEEECC-CEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEEEEEE-CCEEEEEEEEEEEEE
Q ss_conf 6763045-114102337985799999988963078579999999999-999999997106998
Q gi|254780460|r 105 RAVSVSN-IKFRGMVTPDCKLVEYGIDFKKILRGRVVLGAADGWVKV-NGKEIYQANDLRVCL 165 (172)
Q Consensus 105 ~~~~~~~-vkfr~~V~Pgd~~i~~~i~ik~v~~~~~~~~~~~g~~~v-dg~~i~~a~~l~vgl 165 (172)
...++|. +-|++++. -|.=+.|.++.......+ +.+.|.++- +|++|+...--++.-
T Consensus 225 ~~aSLDHs~wFhrp~~-~ddWlLy~~~sp~A~~~r---gl~~G~lf~r~G~LiA~~~QEG~~r 283 (289)
T COG1946 225 QVASLDHSMWFHRPFR-LDDWLLYAQESPSASGGR---GLVRGQLFDRDGQLIASVVQEGLIR 283 (289)
T ss_pred EEEECCCEEEEECCCC-CCCEEEEEEECCCCCCCC---CEEEEEEECCCCCEEEEEEEEEEEE
T ss_conf 4765302589824566-897799972188645775---4212579867887899973357896
No 54
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed
Probab=25.20 E-value=35 Score=15.46 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=12.3
Q ss_pred CCCCCCCCCEEEHH-HHHHHHHHH
Q ss_conf 04556899521127-578887998
Q gi|254780460|r 68 FDCHFKNDPVMPGC-LGLDALWQL 90 (172)
Q Consensus 68 f~gHFp~~PvmPGv-L~iEa~~Ql 90 (172)
-.|||-+.-||||- ||.||++|-
T Consensus 467 ~d~~yLGG~ImPG~~lM~e~la~~ 490 (592)
T PRK13325 467 DDGHYLGGTIMPGFHLMKESLAVR 490 (592)
T ss_pred CCCCEECCCCCCCHHHHHHHHHHH
T ss_conf 678600530156568999999742
No 55
>cd00607 RNase_Sa RNase_Sa. Ribonucleases first isolated from Streptomyces aureofaciens. In general, ribonucleases cleave phosphodiester bonds in RNA and are essential for both non-specific RNA degradation and for numerous forms of RNA processing. RNAse Sa is a guanylate specific endoribonuclease which belongs to the superfamily of microbial ribonucleases. Typical of this sub-family, the enzyme hydrolyses the phosphodiester bonds of RNA at the 3' oxygen end of guanosine residues to yield oligonucleotides with the guanosine-2',3'-cyclophosphate at the 3' end and the hydroxyl group at the 5' end. The terminal guanosine-2,3'-cyclophosphate is hydrolysed by guanyl RNAses to give guanosine-3'-phosphate.
Probab=23.38 E-value=58 Score=14.13 Aligned_cols=52 Identities=15% Similarity=0.239 Sum_probs=30.1
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEE-EEECCCCCCCCCC
Q ss_conf 835579988899864122568999971844134235788-7507865530045
Q gi|254780460|r 19 GEMFGEGNAQLPKPPMLMFHRITQISETGGNYNQGVVRA-EMDITPNLWFFDC 70 (172)
Q Consensus 19 g~~fg~~~~rLP~~p~lmiDrV~~i~~~~g~~g~G~i~a-ek~i~~d~wff~g 70 (172)
|-+||-...+||..+-=---+-|--.|+...-|.-+|++ .-.-++++||+..
T Consensus 33 G~vFgN~E~~LP~~~~GYYrEYTV~TPg~~~RGaRRIVtGg~~~~~~~~YYT~ 85 (95)
T cd00607 33 GVVFGNREGRLPKQSRGYYHEYTVKTPGSRDRGARRIVCGGPPRDTGECYYTD 85 (95)
T ss_pred CCEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCEEECC
T ss_conf 86145664548888898766565279998898861487589989888788635
No 56
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=23.16 E-value=59 Score=14.11 Aligned_cols=33 Identities=42% Similarity=0.863 Sum_probs=20.6
Q ss_pred EEEEEEECCCCCCCCEEEEEEEEC-CCCCCCCCCCCCCCCEEEHHHH
Q ss_conf 689999718441342357887507-8655300455689952112757
Q gi|254780460|r 38 HRITQISETGGNYNQGVVRAEMDI-TPNLWFFDCHFKNDPVMPGCLG 83 (172)
Q Consensus 38 DrV~~i~~~~g~~g~G~i~aek~i-~~d~wff~gHFp~~PvmPGvL~ 83 (172)
=|||.++++|..+ - -++ ..|-|||. |=.|.|||
T Consensus 98 ~Ritavd~~G~~~------i-~dv~~GDlWyFP------~G~pHSiQ 131 (367)
T TIGR03404 98 CRITAVDENGRNY------I-DDVGAGDLWYFP------PGIPHSLQ 131 (367)
T ss_pred EEEEEECCCCCEE------E-ECCCCCCEEECC------CCCCCEEC
T ss_conf 7999988999768------7-425888862148------99973011
No 57
>TIGR00107 deoD purine nucleoside phosphorylase; InterPro: IPR004402 Purine nucleoside phosphorylase 2.4.2.1 from EC also called inosine phosphorylase (pnp) cleave guanosine or inosine to respective bases and sugar-1-phosphate molecules. These enzymes are involved in the salvage of nucleotides and nucleosides.; GO: 0004731 purine-nucleoside phosphorylase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=21.82 E-value=49 Score=14.57 Aligned_cols=34 Identities=18% Similarity=0.469 Sum_probs=25.1
Q ss_pred CCCCCCCE-------EEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCE
Q ss_conf 89986412-------256899997184413423578875078655300455689952
Q gi|254780460|r 28 QLPKPPML-------MFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPV 77 (172)
Q Consensus 28 rLP~~p~l-------miDrV~~i~~~~g~~g~G~i~aek~i~~d~wff~gHFp~~Pv 77 (172)
-||+||++ |++.+.+++.--|=+| |+|.+++.-|
T Consensus 14 LmPGDPLRakyIAe~FL~~~~~vneVRgMlg----------------FTG~YKGk~I 54 (234)
T TIGR00107 14 LMPGDPLRAKYIAETFLEDAKEVNEVRGMLG----------------FTGTYKGKKI 54 (234)
T ss_pred ECCCCCCHHHHHHHHHHCCCEEEEECCCCCC----------------CCCCCCCCEE
T ss_conf 0762841256888876207667630254323----------------0111046358
No 58
>COG0114 FumC Fumarase [Energy production and conversion]
Probab=20.75 E-value=64 Score=13.87 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=23.5
Q ss_pred EEEECCCCCCCCCCCCCCCCEEEHH---HHHHHHHHHHHHHC
Q ss_conf 8750786553004556899521127---57888799886401
Q gi|254780460|r 57 AEMDITPNLWFFDCHFKNDPVMPGC---LGLDALWQLTGFFL 95 (172)
Q Consensus 57 aek~i~~d~wff~gHFp~~PvmPGv---L~iEa~~Ql~~~~~ 95 (172)
+|-.++.|+ |+..||||- .++||+.|.+.-.+
T Consensus 306 gEi~lPene-------PGSSIMPGKVNPtq~EA~tmv~~QV~ 340 (462)
T COG0114 306 GEIELPENE-------PGSSIMPGKVNPTQCEALTMVAAQVI 340 (462)
T ss_pred CCCCCCCCC-------CCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 421057789-------97667899989427999999999997
No 59
>TIGR02480 fliN flagellar motor switch protein FliN; InterPro: IPR012826 Proteins that consist largely of this domain can be designated flagellar motor switch proteins: FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside of this family, are associated with type III secretion systems (TTSS) and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica.; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0016020 membrane, 0044461 flagellin-based flagellum part.
Probab=20.72 E-value=66 Score=13.81 Aligned_cols=14 Identities=29% Similarity=0.235 Sum_probs=10.2
Q ss_pred EEEEECCEEEEEEE
Q ss_conf 99999999999997
Q gi|254780460|r 146 GWVKVNGKEIYQAN 159 (172)
Q Consensus 146 g~~~vdg~~i~~a~ 159 (172)
-.++|||++|+++|
T Consensus 45 ldI~VNG~~ia~GE 58 (77)
T TIGR02480 45 LDILVNGRLIARGE 58 (77)
T ss_pred EEEEECCCEEEEEE
T ss_conf 15988892788898
No 60
>PRK11688 hypothetical protein; Provisional
Probab=20.10 E-value=68 Score=13.73 Aligned_cols=46 Identities=11% Similarity=0.057 Sum_probs=31.5
Q ss_pred CCCEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEEEEEE-CCEEEEEEEE
Q ss_conf 45114102337985799999988963078579999999999-9999999971
Q gi|254780460|r 110 SNIKFRGMVTPDCKLVEYGIDFKKILRGRVVLGAADGWVKV-NGKEIYQAND 160 (172)
Q Consensus 110 ~~vkfr~~V~Pgd~~i~~~i~ik~v~~~~~~~~~~~g~~~v-dg~~i~~a~~ 160 (172)
-++.|-++..+++ +.-+- ++.+.++.++++.++++- +|++|++++.
T Consensus 103 l~v~yLrpa~g~~--l~a~a---~v~r~Gr~va~~~~~~~~~~g~lvA~a~~ 149 (154)
T PRK11688 103 LRVDYLRPGRGER--FTATA---SVLRAGNKVAVARMELHNEQGTHIASGTA 149 (154)
T ss_pred EEEEEECCCCCCE--EEEEE---EEEECCCCEEEEEEEEECCCCCEEEEEEE
T ss_conf 6631104689980--89999---99971797999999999899988999999
Done!