HHsearch alignment of GI: 254780460 and MMDB domain: 1yoc_A_

>1yoc_A (A:) Hypothetical protein PA1835; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Pseudomonas aeruginosa PAO1}
Probab=97.23  E-value=0.014  Score=35.22  Aligned_cols=116  Identities=10%  Similarity=-0.001  Sum_probs=72.2

Q ss_pred             CCCCE--EEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
Q ss_conf             86412--2568999971844134235788750786553004556899521127578887998864012334688266763
Q gi|254780460|r   31 KPPML--MFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVS  108 (172)
Q Consensus        31 ~~p~l--miDrV~~i~~~~g~~g~G~i~aek~i~~d~wff~gHFp~~PvmPGvL~iEa~~Ql~~~~~~~~~~~~~~~~~~  108 (172)
                      ..||.  +=-+++++++       |+++.+..++++  ..    -...++-|-.+.-.+--+++..+ ............
T Consensus        25 ~~p~~~~~g~~~~~~~~-------~~~~~~~~~~~~--~~----n~~g~vhGG~~~~l~D~~~g~~~-~~~~~~~~~~~t   90 (147)
T 1yoc_A           25 FAPYFASIAPQFVELRP-------GYAEVTFPKRRE--VL----NHIGTVHAIALCNAAELAAGTMT-DASIPAGHRWIP   90 (147)
T ss_dssp             HSGGGGGGCCEEEEEET-------TEEEEEECCCGG--GB----CTTSSBCHHHHHHHHHHHHHHHH-HHHSCTTEEEEE
T ss_pred             HCCHHHCCCCEEEEEEC-------CEEEEEEEECHH--HH----CCHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCEEEE
T ss_conf             18912213749999939-------999999995579--93----85124338898999999999999-975898760688


Q ss_pred             E-CCCEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCEEEEEEEEEEE
Q ss_conf             0-451141023379857999999889630785799999999999999999971069
Q gi|254780460|r  109 V-SNIKFRGMVTPDCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLRV  163 (172)
Q Consensus       109 ~-~~vkfr~~V~Pgd~~i~~~i~ik~v~~~~~~~~~~~g~~~vdg~~i~~a~~l~v  163 (172)
                      + -+++|++++..|+.   .++++.++.++++..++.+++++.+|+++++++...+
T Consensus        91 ~~l~i~f~~p~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~va~~~~t~~  143 (147)
T 1yoc_A           91 RGMTVEYLAKATGDVR---AVADGSQIDWQATGNLVVPVVAYVDDKPVFRAEITMY  143 (147)
T ss_dssp             EEEEEEECSCCCSCEE---EEEECTTSCTTCCEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEEEEECCCCEE---EEEEEEEHHCCCCCEEEEEEEEECCCCEEEEEEEEEE
T ss_conf             8888998740469779---9999974006564059999999849958999999999