RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780460|ref|YP_003064873.1| 3-hydroxydecanoyl-(acyl
carrier protein) dehydratase [Candidatus Liberibacter asiaticus str.
psy62]
         (172 letters)



>gnl|CDD|48032 cd01287, FabA, FabA, beta-hydroxydecanoyl-acyl carrier protein
           (ACP)-dehydratase: Bacterial protein of the type II,
           fatty acid synthase system that binds ACP and catalyzes
           both dehydration and isomerization reactions, apparently
           in the same active site. The FabA structure is a
           homodimer with two independent active sites located at
           the dimer interface.  Each active site is tunnel-shaped
           and completely inaccessible to solvent.  No metal ions
           or cofactors are required for ligand binding or
           catalysis..
          Length = 150

 Score =  165 bits (420), Expect = 4e-42
 Identities = 61/147 (41%), Positives = 81/147 (55%), Gaps = 8/147 (5%)

Query: 27  AQLPKPPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLDA 86
            +LP   +LM  R+T+I   GG +  G +RAE DI P+ WFF CHF  DPVMPG LGL+A
Sbjct: 1   PRLPGGQLLMLDRVTEIDPGGGTFGLGYLRAEKDIDPDDWFFPCHFHGDPVMPGSLGLEA 60

Query: 87  LWQLTGFFLGWLGE-------LGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILR-GR 138
           + QL  F+L WLG          +G        K+RG +TP  K V Y +  K++ R G 
Sbjct: 61  MIQLLQFYLIWLGLGTGVDNPRFQGAPGGPGEWKYRGQITPHNKKVTYEVHIKEVGRDGP 120

Query: 139 VVLGAADGWVKVNGKEIYQANDLRVCL 165
                AD  + V+G  IY+A D+ V L
Sbjct: 121 RPYIIADASLWVDGLRIYEAKDIAVRL 147


>gnl|CDD|31107 COG0764, FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier
           protein) dehydratases [Lipid metabolism].
          Length = 147

 Score =  136 bits (343), Expect = 3e-33
 Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 13/158 (8%)

Query: 13  ILRCGEGEMFGEGNAQLPKPPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHF 72
           +L    GE+      + P    L+  R+ +I E G       + A  ++T N  FF  HF
Sbjct: 1   LLAIDIGEILELLPHRYP---FLLVDRVLEIDEEGK-----RIVAIKNVTINEPFFTGHF 52

Query: 73  KNDPVMPGCLGLDALWQLTGFFLGWLGELGK--GRAVSVSNIKFRGMVTPDCKLVEYGID 130
             DP+MPG L L+A+ Q  GF LGWL       G  + + N KF+  V P     +  ++
Sbjct: 53  PGDPIMPGVLILEAMAQAAGFLLGWLLGNKGKLGYFLGIDNAKFKRPVLPG---DQLELE 109

Query: 131 FKKILRGRVVLGAADGWVKVNGKEIYQANDLRVCLTID 168
            K +   R+ +G A G   V+GK + +A  L   +  D
Sbjct: 110 VKLLKSRRLGIGKAKGVATVDGKVVAEAELLFAGVEKD 147


>gnl|CDD|48029 cd00493, FabA_FabZ, FabA/Z, beta-hydroxyacyl-acyl carrier protein
           (ACP)-dehydratases: One of several distinct enzyme types
           of the dissociative, type II, fatty acid synthase system
           (found in bacteria and plants) required to complete
           successive cycles of fatty acid elongation. The third
           step of the elongation cycle, the dehydration of
           beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed
           by FabA or FabZ.  FabA is bifunctional and catalyzes an
           additional isomerization reaction of trans-2-acyl-ACP to
           cis-3-acyl-ACP, an essential reaction to unsaturated
           fatty acid synthesis.  FabZ is the primary dehydratase
           that participates in the elongation cycles of saturated
           as well as unsaturated fatty acid biosynthesis, whereas
           FabA is more active in the dehydration of
           beta-hydroxydecanoyl-ACP. The FabA structure is
           homodimeric with two independent active sites located at
           the dimer interface..
          Length = 131

 Score =  101 bits (252), Expect = 1e-22
 Identities = 47/135 (34%), Positives = 64/135 (47%), Gaps = 15/135 (11%)

Query: 29  LPKPPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLDALW 88
             + PML+  R+ +I   G       + AE ++TPN  FF  HF  DPVMPG LG++A+ 
Sbjct: 1   PHRYPMLLVDRVLEIDPGGR------IVAEKNVTPNEPFFQGHFPGDPVMPGVLGIEAMA 54

Query: 89  QLTGFFLGWLGELGK-----GRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVVLGA 143
           Q      G LG         G    V  +KFRG V P   L        ++L+ R  LG 
Sbjct: 55  QAAAALAGLLGLGKGNPPRLGYLAGVRKVKFRGPVLPGDTLTLEV----ELLKVRRGLGK 110

Query: 144 ADGWVKVNGKEIYQA 158
            DG   V+GK + +A
Sbjct: 111 FDGRAYVDGKLVAEA 125


>gnl|CDD|48033 cd01288, FabZ, FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein
           (ACP) dehydratase that primarily catalyzes the
           dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP,
           the third step in the elongation phase of the bacterial/
           plastid, type II, fatty-acid biosynthesis pathway..
          Length = 131

 Score = 65.6 bits (160), Expect = 7e-12
 Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 14/134 (10%)

Query: 29  LP-KPPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLDAL 87
           LP + P L+  R+ ++        + +V A  ++T N  FF  HF  +P+MPG L ++AL
Sbjct: 1   LPHRYPFLLVDRVLELEP-----GKSIV-AIKNVTINEPFFQGHFPGNPIMPGVLIIEAL 54

Query: 88  WQLTGFFLGWLGELGKGRAV---SVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVVLGAA 144
            Q  G       E  +G+ V    +   +FR  V P  +L+       ++L+ R  +G  
Sbjct: 55  AQAAGILGLKSLEDFEGKLVYFAGIDKARFRKPVVPGDQLILEV----ELLKLRRGIGKF 110

Query: 145 DGWVKVNGKEIYQA 158
            G   V+GK + +A
Sbjct: 111 KGKAYVDGKLVAEA 124


>gnl|CDD|48035 cd03440, hot_dog, The hotdog fold was initially identified in the
           E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein
           (ACP)-dehydratase) structure and subsequently in 4HBT
           (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A
           number of other seemingly unrelated proteins also share
           the hotdog fold.  These proteins have related, but
           distinct, catalytic activities that include metabolic
           roles such as thioester hydrolysis in fatty acid
           metabolism, and degradation of phenylacetic acid and the
           environmental pollutant 4-chlorobenzoate.  This
           superfamily also includes the PaaI-like protein FapR, a
           non-catalytic bacterial homolog involved in
           transcriptional regulation of fatty acid biosynthesis..
          Length = 100

 Score = 30.9 bits (69), Expect = 0.21
 Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 6/71 (8%)

Query: 55  VRAEMDITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKF 114
               + +TP             ++ G L L    +  G     LG  G G      +++F
Sbjct: 1   FVLRLTVTPEDIDGG------GIVHGGLLLALADEAAGAAAARLGGRGLGAVTLSLDVRF 54

Query: 115 RGMVTPDCKLV 125
              V P   L 
Sbjct: 55  LRPVRPGDTLT 65


>gnl|CDD|36436 KOG1222, KOG1222, KOG1222, Kinesin associated protein KAP
           [Intracellular trafficking, secretion, and vesicular
           transport].
          Length = 791

 Score = 27.7 bits (61), Expect = 1.5
 Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 6/48 (12%)

Query: 50  YNQGVVRAEMDITPNLWFFDCHFKNDPVM-----PGCLGLDALWQLTG 92
            N   +  +     +      H  N+P M     P    LD L+ +T 
Sbjct: 722 DNNDPLFNDNADNDS-NSNSNHSNNNPAMSTYSRPLSQDLDDLYNMTS 768


>gnl|CDD|113504 pfam04736, Eclosion, Eclosion hormone.  Eclosion hormone is an
           insect neuropeptide that triggers the performance of
           ecdysis behaviour, which causes shedding of the old
           cuticle at the end of a molt.
          Length = 62

 Score = 26.2 bits (58), Expect = 5.3
 Identities = 9/26 (34%), Positives = 17/26 (65%)

Query: 98  LGELGKGRAVSVSNIKFRGMVTPDCK 123
           LG   +G+  + + I+F+G + PDC+
Sbjct: 25  LGAFFEGQLCAEACIQFKGKLIPDCE 50


>gnl|CDD|31807 COG1620, LldP, L-lactate permease [Energy production and
           conversion].
          Length = 522

 Score = 25.5 bits (56), Expect = 6.7
 Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 83  GLDALWQLTGFFLGWLGELGKGRAVSVSNIKF 114
                + L   FLGW+G    G + + SN+ F
Sbjct: 410 HTGEAFPLFSPFLGWIGVFLTG-SNTSSNLLF 440


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.323    0.143    0.457 

Gapped
Lambda     K      H
   0.267   0.0683    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,232,419
Number of extensions: 113924
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 10
Length of query: 172
Length of database: 6,263,737
Length adjustment: 87
Effective length of query: 85
Effective length of database: 4,383,754
Effective search space: 372619090
Effective search space used: 372619090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.7 bits)