RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780460|ref|YP_003064873.1| 3-hydroxydecanoyl-(acyl
carrier protein) dehydratase [Candidatus Liberibacter asiaticus str.
psy62]
(172 letters)
>gnl|CDD|179953 PRK05174, PRK05174, 3-hydroxydecanoyl-(acyl carrier protein)
dehydratase; Validated.
Length = 172
Score = 324 bits (833), Expect = 8e-90
Identities = 102/168 (60%), Positives = 126/168 (75%)
Query: 1 MKNRKSSYTYEEILRCGEGEMFGEGNAQLPKPPMLMFHRITQISETGGNYNQGVVRAEMD 60
M ++SSYT E++L CG GE+FG GNAQLP PPMLM RIT+ISETGG + +G + AE+D
Sbjct: 1 MMTKQSSYTKEDLLACGRGELFGPGNAQLPAPPMLMMDRITEISETGGEFGKGYIVAELD 60
Query: 61 ITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTP 120
I P+LWFF CHF DPVMPGCLGLDA+WQL GF+LGWLG GKGRA+ V +KF G V P
Sbjct: 61 INPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGPGKGRALGVGEVKFTGQVLP 120
Query: 121 DCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLRVCLTID 168
K V Y ID K+++ ++V+G ADG V V+G+EIY A DL+V L D
Sbjct: 121 TAKKVTYEIDIKRVINRKLVMGIADGRVLVDGEEIYTAKDLKVGLFKD 168
>gnl|CDD|130810 TIGR01749, fabA, beta-hydroxyacyl-[acyl carrier protein]
dehydratase FabA. This enzyme, FabA, shows overlapping
substrate specificity with FabZ with regard to chain
length in fatty acid biosynthesis. It is commonly
designated 3-hydroxydecanoyl-[acyl-carrier-protein]
dehydratase (EC 4.2.1.60) as if it were specific for
that chain length, but its specificity is broader; it is
active even in the initiation of fatty acid
biosynthesis. This enzyme can also isomerize
trans-2-decenoyl-ACP to cis-3-decenoyl-ACP to bypass
reduction by FabI and instead allow biosynthesis of
unsaturated fatty acids. FabA cannot elongate
unsaturated fatty acids.
Length = 169
Score = 270 bits (693), Expect = 9e-74
Identities = 100/162 (61%), Positives = 123/162 (75%)
Query: 4 RKSSYTYEEILRCGEGEMFGEGNAQLPKPPMLMFHRITQISETGGNYNQGVVRAEMDITP 63
+K++YT E++L CG GE+FG GNAQLP PPMLM RI +ISETGG + +G V AE+DI P
Sbjct: 1 KKNAYTREDLLACGRGELFGPGNAQLPAPPMLMIDRIVEISETGGKFGKGYVEAELDIRP 60
Query: 64 NLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDCK 123
+LWFF CHF DPVMPGCLGLDA+WQL GFFLGWLG G+GRA+ V +KF G V P K
Sbjct: 61 DLWFFGCHFIGDPVMPGCLGLDAMWQLVGFFLGWLGGPGRGRALGVGEVKFTGQVLPTAK 120
Query: 124 LVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLRVCL 165
V Y I FK+++ R+V+G ADG V V+G+ IY A+DLRV L
Sbjct: 121 KVTYRIHFKRVINRRLVMGIADGEVLVDGRLIYTASDLRVGL 162
>gnl|CDD|149192 pfam07977, FabA, FabA-like domain. This enzyme domain has a HotDog
fold.
Length = 133
Score = 175 bits (447), Expect = 4e-45
Identities = 66/134 (49%), Positives = 87/134 (64%), Gaps = 4/134 (2%)
Query: 29 LP-KPPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLDAL 87
LP + P LM R+T+I GG + +G + AE ++TPN WFF HF DPVMPG LGL+A+
Sbjct: 1 LPHRYPFLMIDRVTEIDPEGGKF-KGYIVAEKNVTPNEWFFQGHFPGDPVMPGVLGLEAM 59
Query: 88 WQLTGFFLGWLGEL-GKGRAV-SVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVVLGAAD 145
QL GF+L WLG GKGRA + +KFRG VTP K + Y ++ K+I R V+G AD
Sbjct: 60 AQLGGFYLLWLGGGEGKGRARFGIDEVKFRGQVTPGDKQLRYEVEIKRIGPRRGVIGIAD 119
Query: 146 GWVKVNGKEIYQAN 159
G V+GK +Y+A
Sbjct: 120 GRALVDGKLVYEAE 133
>gnl|CDD|130811 TIGR01750, fabZ, beta-hydroxyacyl-[acyl carrier protein]
dehydratase FabZ. This enzyme, FabZ, shows overlapping
substrate specificity with FabA with regard to chain
length in fatty acid biosynthesis. FabZ works
preferentially on shorter chains and is often designated
(3R)-hydroxymyristoyl-[acyl carrier protein]
dehydratase, although its actual specificity is broader.
Unlike FabA, FabZ does not function as an isomerase and
cannot initiate unsaturated fatty acid biosynthesis.
However, only FabZ can act during the elongation of
unsaturated fatty acid chains.
Length = 140
Score = 57.7 bits (140), Expect = 2e-09
Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 33 PMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLDALWQLTG 92
P L+ RI ++ + A ++T N FF HF P+MPG L ++AL Q G
Sbjct: 14 PFLLVDRILELDP------GKRIVAIKNVTINEPFFQGHFPEKPIMPGVLIVEALAQAGG 67
Query: 93 FFLGWL--GELGKGRAV---SVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVVLGAADGW 147
GE+GKG+ V + KFR V P +L+ +F K R +G G
Sbjct: 68 VLAILSLGGEIGKGKLVYFAGIDKAKFRRPVVPGDQLI-LHAEFLKKRRK---IGKFKGE 123
Query: 148 VKVNGK 153
V+GK
Sbjct: 124 ATVDGK 129
>gnl|CDD|183883 PRK13188, PRK13188, bifunctional UDP-3-O-[3-hydroxymyristoyl]
N-acetylglucosamine
deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein]
dehydratase; Reviewed.
Length = 464
Score = 47.6 bits (114), Expect = 1e-06
Identities = 34/141 (24%), Positives = 57/141 (40%), Gaps = 38/141 (26%)
Query: 29 LP-KPPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLDAL 87
LP + P L+ +I ++ +T + ++T N FF HF +PVMPG L ++A+
Sbjct: 330 LPHRYPFLLVDKIIELGDTK-------IVGIKNVTMNEPFFQGHFPGNPVMPGVLQIEAM 382
Query: 88 WQLTG---------------FFLGWLGELGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFK 132
Q G +F+ + +KFR V P L+ + ++
Sbjct: 383 AQTGGILVLNTVPDPENYSTYFM------------KIDKVKFRQKVVPGDTLI-FKVELL 429
Query: 133 KILRGRVVLGAADGWVKVNGK 153
+R + G VNGK
Sbjct: 430 SPIRRGIC--QMQGKAYVNGK 448
>gnl|CDD|178788 PRK00006, fabZ, (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed.
Length = 147
Score = 45.1 bits (108), Expect = 1e-05
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 14/124 (11%)
Query: 33 PMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLDALWQLTG 92
P L+ R+ ++ G + A ++T N FF HF PVMPG L ++A+ Q G
Sbjct: 21 PFLLVDRVLELEP--GKS----IVAIKNVTINEPFFQGHFPGYPVMPGVLIIEAMAQAAG 74
Query: 93 FFLGWLGELGKGRAV---SVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVVLGAADGWVK 149
L E KG+ V + +F+ V P +L ++ K RG + G
Sbjct: 75 -VLALKSEENKGKLVYFAGIDKARFKRPVVPGDQL-ILEVELLKQRRG---IWKFKGVAT 129
Query: 150 VNGK 153
V+GK
Sbjct: 130 VDGK 133
>gnl|CDD|181927 PRK09522, PRK09522, bifunctional glutamine
amidotransferase/anthranilate phosphoribosyltransferase;
Provisional.
Length = 531
Score = 30.0 bits (67), Expect = 0.37
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 76 PVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSN---IKFRGMVTP 120
P++ CLG A+ + G ++G GE+ G+A S+ + F G+ P
Sbjct: 79 PIIGICLGHQAIVEAYGGYVGQAGEILHGKASSIEHDGQAMFAGLTNP 126
>gnl|CDD|178493 PLN02905, PLN02905, beta-amylase.
Length = 702
Score = 28.4 bits (63), Expect = 0.86
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 9/48 (18%)
Query: 97 WLGELGKGRAVSVSNIKF---RGMVTPDCKLVEYGIDFKKILRGRVVL 141
W+ E+G+ S +I F G P+C + +GID ++ILRGR L
Sbjct: 363 WVAEIGR----SNPDIFFTDREGRRNPEC--LSWGIDKERILRGRTAL 404
>gnl|CDD|152308 pfam11872, DUF3392, Protein of unknown function (DUF3392). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria. Proteins in this
family are about 110 amino acids in length.
Length = 106
Score = 27.2 bits (61), Expect = 2.4
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 14/56 (25%)
Query: 84 LDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGRV 139
LD L L + +L E +S++ +V C LV +G D + LR +
Sbjct: 4 LDLLATLGRWLRPYLSE------ISLA------LVA--CLLVVFGDDINRFLRRLL 45
>gnl|CDD|180205 PRK05691, PRK05691, peptide synthase; Validated.
Length = 4334
Score = 27.1 bits (60), Expect = 2.8
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 19/68 (27%)
Query: 99 GELGKGRAVSVSN----------IKFRGMVTPDCKLVEYGIDFKK--------ILRG-RV 139
G GK + V VS+ I+ GM DC+L Y I+F +L G RV
Sbjct: 2343 GSTGKPKGVVVSHGEIAMHCQAVIERFGMRADDCELHFYSINFDAASERLLVPLLCGARV 2402
Query: 140 VLGAADGW 147
VL A W
Sbjct: 2403 VLRAQGQW 2410
>gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional.
Length = 263
Score = 26.6 bits (59), Expect = 3.9
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 130 DFKKILRGR----VVLGAADGWVKVNGKEIYQANDLRV 163
+L+GR ++ A +G G EI Q D+RV
Sbjct: 89 RIDALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRV 126
>gnl|CDD|114761 pfam06057, VirJ, Bacterial virulence protein (VirJ). This family
consists of several bacterial VirJ virulence proteins.
VirJ is thought to be involved in the type IV secretion
system. It is thought that the substrate proteins
localized to the periplasm may associate with the pilus
in a manner that is mediated by VirJ, and suggest a
two-step process for type IV secretion in Agrobacterium.
Length = 192
Score = 25.8 bits (57), Expect = 5.7
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 73 KNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKF 114
K L L GWLG G+G+A V ++
Sbjct: 94 KQRVRQVSLLALGKKADFEISVEGWLGWDGEGKADPVPDLAR 135
>gnl|CDD|182309 PRK10213, nepI, ribonucleoside transporter; Reviewed.
Length = 394
Score = 25.6 bits (56), Expect = 5.9
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 112 IKFRGMVTPDCKLVEYGIDFKKILRGRVVLGAADG 146
I F ++T C LV + F +L GR LG A G
Sbjct: 89 ILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALG 123
>gnl|CDD|185321 PRK15423, PRK15423, hypoxanthine phosphoribosyltransferase;
Provisional.
Length = 178
Score = 25.7 bits (56), Expect = 6.0
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
Query: 105 RAVSVSNIKFRGMVTPDCKLVEYGIDFKKILR-----GRVVL 141
R V+V ++F G PD +V YGID+ + R G+V+L
Sbjct: 135 REVNVP-VEFIGFSIPDEFVVGYGIDYAQRYRHLPYIGKVIL 175
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.323 0.143 0.457
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,927,202
Number of extensions: 177901
Number of successful extensions: 255
Number of sequences better than 10.0: 1
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 18
Length of query: 172
Length of database: 5,994,473
Length adjustment: 87
Effective length of query: 85
Effective length of database: 4,114,577
Effective search space: 349739045
Effective search space used: 349739045
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.6 bits)