RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780460|ref|YP_003064873.1| 3-hydroxydecanoyl-(acyl
carrier protein) dehydratase [Candidatus Liberibacter asiaticus str.
psy62]
         (172 letters)



>1mka_A Beta-hydroxydecanoyl thiol ester dehydrase; fatty acid
           biosynthesis; HET: DAC; 2.00A {Escherichia coli} SCOP:
           d.38.1.2 PDB: 1mkb_A
          Length = 171

 Score =  202 bits (514), Expect = 5e-53
 Identities = 93/166 (56%), Positives = 121/166 (72%)

Query: 3   NRKSSYTYEEILRCGEGEMFGEGNAQLPKPPMLMFHRITQISETGGNYNQGVVRAEMDIT 62
           +++ SYT E++L  G GE+FG    QLP P MLM  R+ +++ETGGN+++G V AE+DI 
Sbjct: 2   DKRESYTKEDLLASGRGELFGAKGPQLPAPNMLMMDRVVKMTETGGNFDKGYVEAELDIN 61

Query: 63  PNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDC 122
           P+LWFF CHF  DPVMPGCLGLDA+WQL GF+LGWLG  GKGRA+ V  +KF G V P  
Sbjct: 62  PDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGEGKGRALGVGEVKFTGQVLPTA 121

Query: 123 KLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLRVCLTID 168
           K V Y I FK+I+  R+++G ADG V V+G+ IY A+DL+V L  D
Sbjct: 122 KKVTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYTASDLKVGLFQD 167


>2cf2_C Fatty acid synthase, DH domain; transferase, fatty acid metabolism,
           fatty acid biosynthesis, multienzyme; 4.30A {Sus scrofa}
           SCOP: d.38.1.2
          Length = 342

 Score =  201 bits (512), Expect = 8e-53
 Identities = 91/161 (56%), Positives = 119/161 (73%)

Query: 3   NRKSSYTYEEILRCGEGEMFGEGNAQLPKPPMLMFHRITQISETGGNYNQGVVRAEMDIT 62
           +++ SYT E++L  G GE+FG    QLP P MLM  R+ +++ETGGN+++G V AE+DI 
Sbjct: 2   DKRESYTKEDLLASGRGELFGAKGPQLPAPNMLMMDRVVKMTETGGNFDKGYVEAELDIN 61

Query: 63  PNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDC 122
           P+LWFF CHF  DPVMPGCLGLDA+WQL GF+LGWLG  GKGRA+ V  +KF G V P  
Sbjct: 62  PDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGEGKGRALGVGEVKFTGQVLPTA 121

Query: 123 KLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLRV 163
           K V Y I FK+I+  R+++G ADG V V+G+ IY A+DL+V
Sbjct: 122 KKVTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYTASDLKV 162



 Score =  177 bits (450), Expect = 1e-45
 Identities = 92/165 (55%), Positives = 120/165 (72%)

Query: 1   MKNRKSSYTYEEILRCGEGEMFGEGNAQLPKPPMLMFHRITQISETGGNYNQGVVRAEMD 60
             +++ SYT E++L  G GE+FG    QLP P MLM  R+ +++ETGGN+++G V AE+D
Sbjct: 171 FVDKRESYTKEDLLASGRGELFGAKGPQLPAPNMLMMDRVVKMTETGGNFDKGYVEAELD 230

Query: 61  ITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTP 120
           I P+LWFF CHF  DPVMPGCLGLDA+WQL GF+LGWLG  GKGRA+ V  +KF G V P
Sbjct: 231 INPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGEGKGRALGVGEVKFTGQVLP 290

Query: 121 DCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLRVCL 165
             K V Y I FK+I+  R+++G ADG V V+G+ IY A+DL+V L
Sbjct: 291 TAKKVTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYTASDLKVGL 335


>2gll_A FABZ, (3R)-hydroxymyristoyl-acyl carrier protein dehydratase;
           lyase; 2.20A {Helicobacter pylori} PDB: 2glm_A* 2glp_A*
           2glv_A 3dp1_A* 3cf8_A* 3cf9_A* 3d04_A* 3doy_A* 3doz_A*
           3dp0_A* 3b7j_A* 3dp2_A* 3dp3_A* 3ed0_A*
          Length = 171

 Score = 86.6 bits (214), Expect = 3e-18
 Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 31/166 (18%)

Query: 2   KNRKSSYTYEEILRCGEGEMFGEGNAQLP-KPPMLMFHRITQISETGGNYNQGVVRAEMD 60
           +N +S +  E IL+             LP + PML+  RIT++           + A  +
Sbjct: 18  QNLQSQFFIEHILQI------------LPHRYPMLLVDRITELQANQK------IVAYKN 59

Query: 61  ITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLG--------WLGELGKGRAVSVSNI 112
           IT N   F+ HF N P+ PG L ++ + Q  GF            + +      +++  +
Sbjct: 60  ITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKV 119

Query: 113 KFRGMVTPDCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQA 158
           KFR  VTP  +L  +     ++L+ + ++    G  +V+GK + +A
Sbjct: 120 KFRIPVTPGDRLEYH----LEVLKHKGMIWQVGGTAQVDGKVVAEA 161


>3esi_A Uncharacterized protein; protein from erwinia carotovora subsp.
           atroseptica (pectobacterium atrosepticum), structural
           genomics; 2.50A {Pectobacterium atrosepticum}
          Length = 129

 Score = 79.7 bits (196), Expect = 3e-16
 Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 12/107 (11%)

Query: 31  KPPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLDALWQL 90
            P  L+ H + +  ET        V   + + P+L++F+ HF   P++PG   LD +   
Sbjct: 2   LPVELVRHDVKKTDETSQ------VELMLQVDPDLFWFNGHFTGQPLLPGVAQLDWVMHY 55

Query: 91  TGFFLGWLGELGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRG 137
               L           +S+ NIKF+  + P   L    + +    + 
Sbjct: 56  ATTVLAQG-----WTFLSIENIKFQQPILPGKTL-RLVLIWHAGKQS 96


>1u1z_A (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase; fatty
           acid biosynthesis, hot DOG fold, lyase; 2.50A
           {Pseudomonas aeruginosa} SCOP: d.38.1.6
          Length = 168

 Score = 78.9 bits (194), Expect = 5e-16
 Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 15/136 (11%)

Query: 29  LP-KPPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLDAL 87
           LP + P L+  R+ ++   G       +RA  +++ N  FF+ HF   P+MPG L ++A+
Sbjct: 31  LPHRYPFLLVDRVVELDIEGKR-----IRAYKNVSINEPFFNGHFPEHPIMPGVLIIEAM 85

Query: 88  WQLTGFFLGWLGELGKGR-----AVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVVLG 142
            Q  G     + ++          V    ++FR  V P  +L      F  + R    + 
Sbjct: 86  AQAAGILGFKMLDVKPADGTLYYFVGSDKLRFRQPVLPGDQLQ-LHAKFISVKRS---IW 141

Query: 143 AADGWVKVNGKEIYQA 158
             D    V+ K +  A
Sbjct: 142 KFDCHATVDDKPVCSA 157


>1z6b_A Pffabz, fatty acid synthesis protein; malaria, beta-hydroxyacyl-ACP
           dehydratase, fatty acid biosynthesis, SAD phasing,
           lyase; 2.09A {Plasmodium falciparum} SCOP: d.38.1.6 PDB:
           1zhg_A 2oki_A 2okh_A
          Length = 154

 Score = 75.9 bits (186), Expect = 4e-15
 Identities = 34/170 (20%), Positives = 63/170 (37%), Gaps = 24/170 (14%)

Query: 1   MKNRKSSYTYEEILRCGEGEMFGEGNAQLP-KPPMLMFHRITQISETGGNYNQGVVRAEM 59
           M N  +S   E+I +             LP + P L+  ++  +           +    
Sbjct: 4   MPNYDTSIDIEDIKKI------------LPHRYPFLLVDKVIYMQPNKT------IIGLK 45

Query: 60  DITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAV---SVSNIKFRG 116
            ++ N  FF+ HF    +MPG L ++AL QL G       +  K        V  ++++ 
Sbjct: 46  QVSTNEPFFNGHFPQKQIMPGVLQIEALAQLAGILCLKSDDSQKNNLFLFAGVDGVRWKK 105

Query: 117 MVTPDCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLRVCLT 166
            V P   L     +     +  + +    G   VNGK +   +++   L+
Sbjct: 106 PVLPGDTL-TMQANLISF-KSSLGIAKLSGVGYVNGKVVINISEMTFALS 153


>3d6x_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; FABZ, hot
           DOG fold, cytoplasm, lipid A biosynthesis, lipid
           synthesis; HET: MSE; 2.59A {Campylobacter jejuni subsp}
          Length = 146

 Score = 74.3 bits (182), Expect = 1e-14
 Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 17/138 (12%)

Query: 29  LP-KPPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLDAL 87
           LP + P L+  +IT++           V    +I+ +   F  HF   P+ PG L L+ +
Sbjct: 11  LPHRYPFLLVDKITELKVKEV------VLGYKNISISDHVFMGHFPGHPIYPGVLILEGM 64

Query: 88  WQLTGFFLGWLGELGKG------RAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVVL 141
            Q  G       E              +   KFR  V P  +L         +++ R  +
Sbjct: 65  AQTGGVLAFESMEDKVDPKSKVVYFTGIDGAKFRNPVRPGDRLDYE----MSVVKNRGNM 120

Query: 142 GAADGWVKVNGKEIYQAN 159
               G   V+G  + +A 
Sbjct: 121 WIFKGQAFVDGNLVAEAE 138


>1ece_A Endocellulase E1; glycosyl hydrolase; HET: BGC; 2.40A {Acidothermus
           cellulolyticus} SCOP: c.1.8.3 PDB: 1vrx_A
          Length = 358

 Score = 27.7 bits (60), Expect = 1.6
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 3/29 (10%)

Query: 143 AADGWVKVNGKEIYQANDLRVCLTIDRGV 171
           A  G+   +G+EI  AN++ V +    G+
Sbjct: 1   AGGGYWHTSGREILDANNVPVRI---AGI 26


>1cjb_A Protein (hypoxanthine-guanine phosphoribosyltransferase); malaria,
           purine salvage, transition state inhibitor; HET: IRP;
           2.00A {Plasmodium falciparum} SCOP: c.61.1.1
          Length = 231

 Score = 25.7 bits (56), Expect = 5.2
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 4/59 (6%)

Query: 103 KGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDL 161
           +    +     F G   PD  +V Y +D+ +I R           V   GK+ Y+A  L
Sbjct: 177 RTPLWNGFKADFVGFSIPDHFVVGYSLDYNEIFRDLDHCCL----VNDEGKKKYKATSL 231


>1y60_A Formaldehyde-activating enzyme FAE; pentamer, beta-alpha-beta
          LEFT handed crossover, tetrahydromethanopterin-binding,
          lyase; HET: H4M; 1.90A {Methylobacterium extorquens
          AM1} SCOP: d.14.1.12 PDB: 1y5y_A*
          Length = 169

 Score = 25.1 bits (55), Expect = 8.2
 Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 5/38 (13%)

Query: 28 QLPKPPMLMFHRIT-----QISETGGNYNQGVVRAEMD 60
             KP  LMF+++T     Q  +  G    GV  A  D
Sbjct: 59 LPCKPNTLMFNKVTINDARQAVQMFGPAQHGVAMAVQD 96


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.323    0.143    0.457 

Gapped
Lambda     K      H
   0.267   0.0593    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,625,741
Number of extensions: 72486
Number of successful extensions: 197
Number of sequences better than 10.0: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 20
Length of query: 172
Length of database: 5,693,230
Length adjustment: 86
Effective length of query: 86
Effective length of database: 3,608,246
Effective search space: 310309156
Effective search space used: 310309156
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.5 bits)