RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780460|ref|YP_003064873.1| 3-hydroxydecanoyl-(acyl carrier protein) dehydratase [Candidatus Liberibacter asiaticus str. psy62] (172 letters) >1mka_A Beta-hydroxydecanoyl thiol ester dehydrase; fatty acid biosynthesis; HET: DAC; 2.00A {Escherichia coli} SCOP: d.38.1.2 PDB: 1mkb_A Length = 171 Score = 202 bits (514), Expect = 5e-53 Identities = 93/166 (56%), Positives = 121/166 (72%) Query: 3 NRKSSYTYEEILRCGEGEMFGEGNAQLPKPPMLMFHRITQISETGGNYNQGVVRAEMDIT 62 +++ SYT E++L G GE+FG QLP P MLM R+ +++ETGGN+++G V AE+DI Sbjct: 2 DKRESYTKEDLLASGRGELFGAKGPQLPAPNMLMMDRVVKMTETGGNFDKGYVEAELDIN 61 Query: 63 PNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDC 122 P+LWFF CHF DPVMPGCLGLDA+WQL GF+LGWLG GKGRA+ V +KF G V P Sbjct: 62 PDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGEGKGRALGVGEVKFTGQVLPTA 121 Query: 123 KLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLRVCLTID 168 K V Y I FK+I+ R+++G ADG V V+G+ IY A+DL+V L D Sbjct: 122 KKVTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYTASDLKVGLFQD 167 >2cf2_C Fatty acid synthase, DH domain; transferase, fatty acid metabolism, fatty acid biosynthesis, multienzyme; 4.30A {Sus scrofa} SCOP: d.38.1.2 Length = 342 Score = 201 bits (512), Expect = 8e-53 Identities = 91/161 (56%), Positives = 119/161 (73%) Query: 3 NRKSSYTYEEILRCGEGEMFGEGNAQLPKPPMLMFHRITQISETGGNYNQGVVRAEMDIT 62 +++ SYT E++L G GE+FG QLP P MLM R+ +++ETGGN+++G V AE+DI Sbjct: 2 DKRESYTKEDLLASGRGELFGAKGPQLPAPNMLMMDRVVKMTETGGNFDKGYVEAELDIN 61 Query: 63 PNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDC 122 P+LWFF CHF DPVMPGCLGLDA+WQL GF+LGWLG GKGRA+ V +KF G V P Sbjct: 62 PDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGEGKGRALGVGEVKFTGQVLPTA 121 Query: 123 KLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLRV 163 K V Y I FK+I+ R+++G ADG V V+G+ IY A+DL+V Sbjct: 122 KKVTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYTASDLKV 162 Score = 177 bits (450), Expect = 1e-45 Identities = 92/165 (55%), Positives = 120/165 (72%) Query: 1 MKNRKSSYTYEEILRCGEGEMFGEGNAQLPKPPMLMFHRITQISETGGNYNQGVVRAEMD 60 +++ SYT E++L G GE+FG QLP P MLM R+ +++ETGGN+++G V AE+D Sbjct: 171 FVDKRESYTKEDLLASGRGELFGAKGPQLPAPNMLMMDRVVKMTETGGNFDKGYVEAELD 230 Query: 61 ITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTP 120 I P+LWFF CHF DPVMPGCLGLDA+WQL GF+LGWLG GKGRA+ V +KF G V P Sbjct: 231 INPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGEGKGRALGVGEVKFTGQVLP 290 Query: 121 DCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLRVCL 165 K V Y I FK+I+ R+++G ADG V V+G+ IY A+DL+V L Sbjct: 291 TAKKVTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYTASDLKVGL 335 >2gll_A FABZ, (3R)-hydroxymyristoyl-acyl carrier protein dehydratase; lyase; 2.20A {Helicobacter pylori} PDB: 2glm_A* 2glp_A* 2glv_A 3dp1_A* 3cf8_A* 3cf9_A* 3d04_A* 3doy_A* 3doz_A* 3dp0_A* 3b7j_A* 3dp2_A* 3dp3_A* 3ed0_A* Length = 171 Score = 86.6 bits (214), Expect = 3e-18 Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 31/166 (18%) Query: 2 KNRKSSYTYEEILRCGEGEMFGEGNAQLP-KPPMLMFHRITQISETGGNYNQGVVRAEMD 60 +N +S + E IL+ LP + PML+ RIT++ + A + Sbjct: 18 QNLQSQFFIEHILQI------------LPHRYPMLLVDRITELQANQK------IVAYKN 59 Query: 61 ITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLG--------WLGELGKGRAVSVSNI 112 IT N F+ HF N P+ PG L ++ + Q GF + + +++ + Sbjct: 60 ITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKV 119 Query: 113 KFRGMVTPDCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQA 158 KFR VTP +L + ++L+ + ++ G +V+GK + +A Sbjct: 120 KFRIPVTPGDRLEYH----LEVLKHKGMIWQVGGTAQVDGKVVAEA 161 >3esi_A Uncharacterized protein; protein from erwinia carotovora subsp. atroseptica (pectobacterium atrosepticum), structural genomics; 2.50A {Pectobacterium atrosepticum} Length = 129 Score = 79.7 bits (196), Expect = 3e-16 Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 12/107 (11%) Query: 31 KPPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLDALWQL 90 P L+ H + + ET V + + P+L++F+ HF P++PG LD + Sbjct: 2 LPVELVRHDVKKTDETSQ------VELMLQVDPDLFWFNGHFTGQPLLPGVAQLDWVMHY 55 Query: 91 TGFFLGWLGELGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRG 137 L +S+ NIKF+ + P L + + + Sbjct: 56 ATTVLAQG-----WTFLSIENIKFQQPILPGKTL-RLVLIWHAGKQS 96 >1u1z_A (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase; fatty acid biosynthesis, hot DOG fold, lyase; 2.50A {Pseudomonas aeruginosa} SCOP: d.38.1.6 Length = 168 Score = 78.9 bits (194), Expect = 5e-16 Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 15/136 (11%) Query: 29 LP-KPPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLDAL 87 LP + P L+ R+ ++ G +RA +++ N FF+ HF P+MPG L ++A+ Sbjct: 31 LPHRYPFLLVDRVVELDIEGKR-----IRAYKNVSINEPFFNGHFPEHPIMPGVLIIEAM 85 Query: 88 WQLTGFFLGWLGELGKGR-----AVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVVLG 142 Q G + ++ V ++FR V P +L F + R + Sbjct: 86 AQAAGILGFKMLDVKPADGTLYYFVGSDKLRFRQPVLPGDQLQ-LHAKFISVKRS---IW 141 Query: 143 AADGWVKVNGKEIYQA 158 D V+ K + A Sbjct: 142 KFDCHATVDDKPVCSA 157 >1z6b_A Pffabz, fatty acid synthesis protein; malaria, beta-hydroxyacyl-ACP dehydratase, fatty acid biosynthesis, SAD phasing, lyase; 2.09A {Plasmodium falciparum} SCOP: d.38.1.6 PDB: 1zhg_A 2oki_A 2okh_A Length = 154 Score = 75.9 bits (186), Expect = 4e-15 Identities = 34/170 (20%), Positives = 63/170 (37%), Gaps = 24/170 (14%) Query: 1 MKNRKSSYTYEEILRCGEGEMFGEGNAQLP-KPPMLMFHRITQISETGGNYNQGVVRAEM 59 M N +S E+I + LP + P L+ ++ + + Sbjct: 4 MPNYDTSIDIEDIKKI------------LPHRYPFLLVDKVIYMQPNKT------IIGLK 45 Query: 60 DITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAV---SVSNIKFRG 116 ++ N FF+ HF +MPG L ++AL QL G + K V ++++ Sbjct: 46 QVSTNEPFFNGHFPQKQIMPGVLQIEALAQLAGILCLKSDDSQKNNLFLFAGVDGVRWKK 105 Query: 117 MVTPDCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLRVCLT 166 V P L + + + + G VNGK + +++ L+ Sbjct: 106 PVLPGDTL-TMQANLISF-KSSLGIAKLSGVGYVNGKVVINISEMTFALS 153 >3d6x_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; FABZ, hot DOG fold, cytoplasm, lipid A biosynthesis, lipid synthesis; HET: MSE; 2.59A {Campylobacter jejuni subsp} Length = 146 Score = 74.3 bits (182), Expect = 1e-14 Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 17/138 (12%) Query: 29 LP-KPPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLDAL 87 LP + P L+ +IT++ V +I+ + F HF P+ PG L L+ + Sbjct: 11 LPHRYPFLLVDKITELKVKEV------VLGYKNISISDHVFMGHFPGHPIYPGVLILEGM 64 Query: 88 WQLTGFFLGWLGELGKG------RAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVVL 141 Q G E + KFR V P +L +++ R + Sbjct: 65 AQTGGVLAFESMEDKVDPKSKVVYFTGIDGAKFRNPVRPGDRLDYE----MSVVKNRGNM 120 Query: 142 GAADGWVKVNGKEIYQAN 159 G V+G + +A Sbjct: 121 WIFKGQAFVDGNLVAEAE 138 >1ece_A Endocellulase E1; glycosyl hydrolase; HET: BGC; 2.40A {Acidothermus cellulolyticus} SCOP: c.1.8.3 PDB: 1vrx_A Length = 358 Score = 27.7 bits (60), Expect = 1.6 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 3/29 (10%) Query: 143 AADGWVKVNGKEIYQANDLRVCLTIDRGV 171 A G+ +G+EI AN++ V + G+ Sbjct: 1 AGGGYWHTSGREILDANNVPVRI---AGI 26 >1cjb_A Protein (hypoxanthine-guanine phosphoribosyltransferase); malaria, purine salvage, transition state inhibitor; HET: IRP; 2.00A {Plasmodium falciparum} SCOP: c.61.1.1 Length = 231 Score = 25.7 bits (56), Expect = 5.2 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 4/59 (6%) Query: 103 KGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDL 161 + + F G PD +V Y +D+ +I R V GK+ Y+A L Sbjct: 177 RTPLWNGFKADFVGFSIPDHFVVGYSLDYNEIFRDLDHCCL----VNDEGKKKYKATSL 231 >1y60_A Formaldehyde-activating enzyme FAE; pentamer, beta-alpha-beta LEFT handed crossover, tetrahydromethanopterin-binding, lyase; HET: H4M; 1.90A {Methylobacterium extorquens AM1} SCOP: d.14.1.12 PDB: 1y5y_A* Length = 169 Score = 25.1 bits (55), Expect = 8.2 Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 5/38 (13%) Query: 28 QLPKPPMLMFHRIT-----QISETGGNYNQGVVRAEMD 60 KP LMF+++T Q + G GV A D Sbjct: 59 LPCKPNTLMFNKVTINDARQAVQMFGPAQHGVAMAVQD 96 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.323 0.143 0.457 Gapped Lambda K H 0.267 0.0593 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,625,741 Number of extensions: 72486 Number of successful extensions: 197 Number of sequences better than 10.0: 1 Number of HSP's gapped: 190 Number of HSP's successfully gapped: 20 Length of query: 172 Length of database: 5,693,230 Length adjustment: 86 Effective length of query: 86 Effective length of database: 3,608,246 Effective search space: 310309156 Effective search space used: 310309156 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 53 (24.5 bits)