HHsearch alignment for GI: 254780461 and conserved domain: COG3425
>COG3425 PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism].
Probab=98.92 E-value=2.2e-08 Score=71.41 Aligned_cols=257 Identities=16% Similarity=0.173 Sum_probs=146.3
Q ss_pred CEEEEEEEEECCCC-CCHHHHHHHHHCCCCCCEECCCCCCCCCCEEECCEECCCHHHCCCHHHHHHCCHHHHHHHHHHHH
Q ss_conf 28999332670889-89999999998188762336775754785124540147866848989997249999999999999
Q gi|254780461|r 3 RVAVTGMGIVSSIG-NNVSEVAISLREARSGITFSEDFAKFGFRCQVWGKPLLNAAELIDRKAMRFLSQGGTWGHLAMQE 81 (406)
Q Consensus 3 rV~ItG~G~v~p~G-~~~~e~w~~L~~G~sgi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~r~~d~~~~l~l~aa~~ 81 (406)
T Consensus 2 ~iGI~~~g~y~p~~~i~~~ela~~~g-----------~d~~k~~~gl~-~----~e~sv~----~~~ED~vTmaveAA~~ 61 (377)
T COG3425 2 MIGIVGIGAYIPRYRIKLEELARAWG-----------VDPEKIKKGLG-V----EEKSVP----PWDEDAVTMAVEAARN 61 (377)
T ss_pred CCCCCEEEEECCCEEEEHHHHHHHCC-----------CCHHHHHHCCC-C----CCCCCC----CCCHHHHHHHHHHHHH
T ss_conf 55512388856623860999976328-----------88377653004-2----344679----9742089999999999
Q ss_pred HHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC--
Q ss_conf 753410133222233332056325676301456778887512522123200122332356778776312233333333--
Q gi|254780461|r 82 AITDSRLQPCEITHERTGLIAGSGGPSTKCIVSAADLTREHCSTRRIGPFAVPKAMSSTASATLSTWFKIRGTSYSIS-- 159 (406)
Q Consensus 82 Al~dAGl~~~~~~~~r~gv~vgt~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~~is~~~gl~Gp~~ti~-- 159 (406)
T Consensus 62 ~l~r~~~D~~~Ig----~v~vgTES~~d~-----------------~K----------~~at~v~~~lg~~~~~~~~d~~ 110 (377)
T COG3425 62 ALKRADIDPSKIG----AVIVGSESGPDA-----------------VK----------PTATIVAEALGLNPSARAADVE 110 (377)
T ss_pred HHHCCCCCHHHCC----EEEEECCCCCCC-----------------CC----------CHHHHHHHHHCCCCCEEHHHHH
T ss_conf 8751388988966----699953777654-----------------44----------0589999983899751205678
Q ss_pred CCCCCCCCCCCCEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEC
Q ss_conf 33444433432100113456055788731345667532222221223346786622322235666664131265144311
Q gi|254780461|r 160 SACATSAHCIGNAAELIQSGKQDIMFAGGQEDLDWTMSNLFDAMGAMSSHFNHDPCSASRPYDSRRDGFVISGGAAVIVL 239 (406)
Q Consensus 160 ~acaSgl~Al~~A~~~L~~G~~D~aivGg~d~~~~~~~~~f~~~~~ls~~~~~~p~~~~rPFd~~~~G~~~gEGa~~~vL 239 (406)
T Consensus 111 ~AC~agT~aL~~a~~~v~s~~~~~~LvI~sD~a~~----------~~~--------~~~--------E~t~GAGavA~lI 164 (377)
T COG3425 111 FACYAGTAALQAAIGWVESGMISYGLVIGADTAQY----------APG--------DAL--------EYTAGAGAVAFLI 164 (377)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHCC----------CCC--------CCC--------CCCCCCCEEEEEE
T ss_conf 78998899999999999728755417996311035----------888--------656--------7667786089998
Q ss_pred CCHHHHCCCCCCCCCEEEEEEE-ECCCCCCCC------CCH------HHHHHHHHHHHHH-------HHCCCCEEEECCC
Q ss_conf 2213201100112320122101-026521234------433------5778988754210-------0100210221024
Q gi|254780461|r 240 EEMERAKARGAKIYAELTGYGS-TCDGDDMVS------PSG------EGAIRCMRQALSS-------VEEPVDYINTHGT 299 (406)
Q Consensus 240 e~~~~A~~rGa~i~a~i~g~~~-~~d~~~~~~------p~~------~g~~~~i~~Al~~-------a~~~i~~i~~hgt 299 (406)
T Consensus 165 g~n~-------~~~a~~~~~~syt~d~~DFwRp~~~~yp~~dg~~s~~~Y~~~~~~a~~~~~~k~gls~~dfdy~vfH~P 237 (377)
T COG3425 165 GKNP-------PIVAEFEGTGSYTTDTPDFWRPDGQPYPYVDGRFSEPAYFKHVENAAKGYMEKTGLSPDDFDYIVFHQP 237 (377)
T ss_pred ECCC-------CEEEEECCCEEEECCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHCCCHHHHCEEEECCC
T ss_conf 0698-------727872475677457776146689846640763558999999999999999983898455075983179
Q ss_pred CCCCCCCCHHHHHHCCC-C-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 55544420012222023-5-544336475210132358999999999999
Q gi|254780461|r 300 ATPKGDKKEVEAIREVF-K-GNIPYIQSTKSLTGHSLGAAGAQEAIYCLI 347 (406)
Q Consensus 300 gt~~~D~~E~~ai~~~f-~-~~~~~v~s~K~~~GH~~gasG~~~~~~~~~ 347 (406)
T Consensus 238 ~~k~~----~ka~k~l~~~~e~v~~~l~~~~~vGN~YtgS~~L~Las~Ld 283 (377)
T COG3425 238 NGKFP----KKAAKSLGFKEEQVKPGLVYPQRIGNTYTGSLLLGLASLLD 283 (377)
T ss_pred CCCHH----HHHHHHHCCCHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 87248----99999857347662843011665275111069999999985