HHsearch alignment for GI: 254780461 and conserved domain: PRK08947
>PRK08947 fadA 3-ketoacyl-CoA thiolase; Reviewed.
Probab=99.70 E-value=1.4e-16 Score=122.47 Aligned_cols=266 Identities=21% Similarity=0.294 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHHHH-HCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999997534-1013322223333205632567630145677888751252212320012233235677877631
Q gi|254780461|r 71 GGTWGHLAMQEAITD-SRLQPCEITHERTGLIAGSGGPSTKCIVSAADLTREHCSTRRIGPFAVPKAMSSTASATLSTWF 149 (406)
Q Consensus 71 ~~~l~l~aa~~Al~d-AGl~~~~~~~~r~gv~vgt~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~~is~~~ 149 (406)
T Consensus 27 ~~~L~a~~i~~~l~r~~~l~~~~Id~----vi~G~v~~~~~~g--------------------------~n~aR~aaL~a 76 (387)
T PRK08947 27 AEDLSAHLMRALLARNPALDPAEIED----IIWGCVQQTLEQG--------------------------FNIARNAALLA 76 (387)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHCCE----EEEEECCCCCCCC--------------------------CCHHHHHHHHC
T ss_conf 99999999999997458969899898----9997066554433--------------------------35999999976
Q ss_pred CC--CCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEEEEECCCCCCCCCC-CCCCC--------------CCC----C--
Q ss_conf 22--3333333333444433432100113456055788731345667532-22222--------------122----3--
Q gi|254780461|r 150 KI--RGTSYSISSACATSAHCIGNAAELIQSGKQDIMFAGGQEDLDWTMS-NLFDA--------------MGA----M-- 206 (406)
Q Consensus 150 gl--~Gp~~ti~~acaSgl~Al~~A~~~L~~G~~D~aivGg~d~~~~~~~-~~f~~--------------~~~----l-- 206 (406)
T Consensus 77 Glp~~vpa~tVnr~C~SGl~Ai~~Aa~~I~~G~~dvvlaGGvEsMS~~P~~~~~~~~~~~~~~~~~~~~~Mg~tAE~~a~ 156 (387)
T PRK08947 77 GIPHTVPAVTVNRLCGSSMQALHDAARAIMTGDGDVFLIGGVEHMGHVPMSHGVDFHPGLSKNVAKASGMMGLTAEMLGK 156 (387)
T ss_pred CCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHH
T ss_conf 99988861664014237999999999865279977899841022577865457789942010130212767789999999
Q ss_pred ----C--------------------CCC---------CCCC---------CC------------CCCC-CCCC------C
Q ss_conf ----3--------------------467---------8662---------23------------2223-5666------6
Q gi|254780461|r 207 ----S--------------------SHF---------NHDP---------CS------------ASRP-YDSR------R 225 (406)
Q Consensus 207 ----s--------------------~~~---------~~~p---------~~------------~~rP-Fd~~------~ 225 (406)
T Consensus 157 ~~gisRe~qD~~A~~Sh~rA~~A~~~g~f~~eIvpv~~~~~~g~~~~~~~De~~R~~~t~e~l~~L~p~f~p~~GtvTag 236 (387)
T PRK08947 157 MHGISREQQDAFAARSHQRAWAATQEGRFKNEIIPTEGHDADGVLKLFDYDEVIRPETTVEALAALRPAFDPVNGTVTAG 236 (387)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCEECC
T ss_conf 96989999999999999999999875995022156435678896478503556567577555520464224778843267
Q ss_pred CCEEECCCEEEEECCCHHHHCCCCCCCCCEEEEEEEECCCCCCCCCC--HHHHHHHHHHHHHHH---HCCCCEEEECCCC
Q ss_conf 64131265144311221320110011232012210102652123443--357789887542100---1002102210245
Q gi|254780461|r 226 DGFVISGGAAVIVLEEMERAKARGAKIYAELTGYGSTCDGDDMVSPS--GEGAIRCMRQALSSV---EEPVDYINTHGTA 300 (406)
Q Consensus 226 ~G~~~gEGa~~~vLe~~~~A~~rGa~i~a~i~g~~~~~d~~~~~~p~--~~g~~~~i~~Al~~a---~~~i~~i~~hgtg 300 (406)
T Consensus 237 nss~~~DGAAavll~s~~~a~~~gl~p~ari~~~~~~g~-----dP~~~~~gp~~A~~~~L~~agl~~~Did~~EinEAF 311 (387)
T PRK08947 237 TSSALSDGASAMLVMSESRAKELGLKPRARIRSMAVAGC-----DPSIMGYGPVPATQKALKRAGLSIADIDVFELNEAF 311 (387)
T ss_pred CCCCCCCHHHHHHHCCHHHHHHCCCCCEEEEEEEEEEEC-----CHHHCCCCHHHHHHHHHHHCCCCHHHCCEEEEHHHH
T ss_conf 778433559999870899999779983399999998745-----877808267999999999849986557842212566
Q ss_pred CCCCCCCHHHHHHCCCCC-CC--CCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 554442001222202355-44--33647521--01323589999999999999871840786888889766788873799
Q gi|254780461|r 301 TPKGDKKEVEAIREVFKG-NI--PYIQSTKS--LTGHSLGAAGAQEAIYCLIMMQERFIGESKNIEEIDPEFKGIPIVRK 375 (406)
Q Consensus 301 t~~~D~~E~~ai~~~f~~-~~--~~v~s~K~--~~GH~~gasG~~~~~~~~~~l~~g~ipp~~n~~~~~~~~~~l~~v~~ 375 (406)
T Consensus 312 ----A~q~l~~~~~l-g~~~~~~~kvN~~GGaiA~GHP~GATGarl~~~l~~~L~~~----------------------- 363 (387)
T PRK08947 312 ----AAQSLPCLKDL-GLLDKMDEKVNLNGGAIALGHPLGCSGARISTTLLNLMERK----------------------- 363 (387)
T ss_pred ----HHHHHHHHHHC-CCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHH-----------------------
T ss_conf ----87799999985-99889833578996588738881102899999999999981-----------------------
Q ss_pred CCCCCCCCEEEEECCCCCCEEEEEEEEEC
Q ss_conf 88558835899935567773679999942
Q gi|254780461|r 376 RIDNAKIDTVLSNSFGFGGTNATLVFRRY 404 (406)
Q Consensus 376 ~~~~~~~~~al~~s~GfGG~n~~~vl~~~ 404 (406)
T Consensus 364 -----~~~~gl~s~c~ggG~g~A~~ierv 387 (387)
T PRK08947 364 -----DAQFGLATMCIGLGQGIATVFERV 387 (387)
T ss_pred -----CCCEEEEEECCCCCCEEEEEEEEC
T ss_conf -----999999996232141307999959