HHsearch alignment for GI: 254780461 and conserved domain: cd00826

>cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=99.77  E-value=2.3e-18  Score=133.69  Aligned_cols=248  Identities=19%  Similarity=0.290  Sum_probs=153.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             49999999999999753410133222233332056325676301456778887512522123200122332356778776
Q gi|254780461|r   68 LSQGGTWGHLAMQEAITDSRLQPCEITHERTGLIAGSGGPSTKCIVSAADLTREHCSTRRIGPFAVPKAMSSTASATLST  147 (406)
Q Consensus        68 ~d~~~~l~l~aa~~Al~dAGl~~~~~~~~r~gv~vgt~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~~is~  147 (406)
T Consensus        20 ~~~a~eL~~~ai~~al~~agi~~~~Id~----vi~G~~~~~g~g~---------------------------n~ar~~~l   68 (393)
T cd00826          20 NDLAHEAGAKAIAAALEPAGVAAGAVEE----ACLGQVLGAGEGQ---------------------------NCAQQAAM   68 (393)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHCCE----EEEEECCCCCCCC---------------------------CHHHHHHH
T ss_conf             8999999999999999982969899898----9999258755554---------------------------19999999


Q ss_pred             H--HCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEEEEECCCCCCCCCCC---------------------CC--CC
Q ss_conf             3--12233333333334444334321001134560557887313456675322---------------------22--22
Q gi|254780461|r  148 W--FKIRGTSYSISSACATSAHCIGNAAELIQSGKQDIMFAGGQEDLDWTMSN---------------------LF--DA  202 (406)
Q Consensus       148 ~--~gl~Gp~~ti~~acaSgl~Al~~A~~~L~~G~~D~aivGg~d~~~~~~~~---------------------~f--~~  202 (406)
T Consensus        69 ~ag~~~~vp~~tV~~~CaSG~~Ai~~A~~~I~sG~~dvvlagGvEsms~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~~s  148 (393)
T cd00826          69 HAGGLQEAPAIGMNNLCGSGLRALALAMQLIAGGDANCILAGGFEKMETSAENNAKEKHIDVLINKYGMRACPDAFALAG  148 (393)
T ss_pred             HCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHCCHHHHHHH
T ss_conf             75999899768876847899999999999997699998999505506767643546666888876328831236999999


Q ss_pred             C---------CC----C---C--CC-----CCCCCCC------------CCCC-CCCC-----CCCEEECCCEEEEECCC
Q ss_conf             1---------22----3---3--46-----7866223------------2223-5666-----66413126514431122
Q gi|254780461|r  203 M---------GA----M---S--SH-----FNHDPCS------------ASRP-YDSR-----RDGFVISGGAAVIVLEE  241 (406)
Q Consensus       203 ~---------~~----l---s--~~-----~~~~p~~------------~~rP-Fd~~-----~~G~~~gEGa~~~vLe~  241 (406)
T Consensus       149 ~~~~~~a~~~G~~~e~~a~v~v~~~~~~~~~~~n~~a~~~~~~tle~~~~l~pv~~~~g~lta~n~s~~sDGAAA~vl~s  228 (393)
T cd00826         149 QAGAEAAEKDGRFKDEFAKFGVKGRKGDIHSDADEYIQFGDEASLDEIAKLRPAFDKEDFLTAGNACGLNDGAAAAILMS  228 (393)
T ss_pred             HHHHHHHHHHCCCHHHHCCEEEECCCCCEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC
T ss_conf             99999999829977772305550675746521453334587768888961688645577532445678888417899943


Q ss_pred             HHHHCCCCCCC-------CCEEEEEEEECCCCCCC-CCCHHHHHHHHHHHHHHH---HCCCCEEEECCCCCCCCCCCHHH
Q ss_conf             13201100112-------32012210102652123-443357789887542100---10021022102455544420012
Q gi|254780461|r  242 MERAKARGAKI-------YAELTGYGSTCDGDDMV-SPSGEGAIRCMRQALSSV---EEPVDYINTHGTATPKGDKKEVE  310 (406)
Q Consensus       242 ~~~A~~rGa~i-------~a~i~g~~~~~d~~~~~-~p~~~g~~~~i~~Al~~a---~~~i~~i~~hgtgt~~~D~~E~~  310 (406)
T Consensus       229 e~~a~~~g~~~~~~~i~~~~~i~~~~~~~~~p~~~~~~~~~~p~~A~~~al~~aGl~~~Did~~Ei~eaFa~----~~l~  304 (393)
T cd00826         229 EAEAQKHGLQSKAREIQALEMITDMASTFEDKKVIKMVGGDGPIEAARKALEKAGLGIGDLDLIEAHDAFAA----NACA  304 (393)
T ss_pred             HHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCHH----HHHH
T ss_conf             999997389641023112699997560232841010124331899999999982998001664563242349----9999


Q ss_pred             HHHCC-C-----------------CCCCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             22202-3-----------------554433647521--01323589999999999999871
Q gi|254780461|r  311 AIREV-F-----------------KGNIPYIQSTKS--LTGHSLGAAGAQEAIYCLIMMQE  351 (406)
Q Consensus       311 ai~~~-f-----------------~~~~~~v~s~K~--~~GH~~gasG~~~~~~~~~~l~~  351 (406)
T Consensus       305 ~~e~lg~~~~g~~~~~~~~g~~~~~g~~-pvN~~GG~ia~GHP~GAtG~~~~~~l~~qLr~  364 (393)
T cd00826         305 TNEALGLCPEGQGGALVDRGDNTYGGKS-IINPNGGAIAIGHPIGASGAAICAELCFELKG  364 (393)
T ss_pred             HHHHCCCCCCCCHHHHHHCCCCCCCCCC-EECCCHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             9998098912231355540454458984-38777458770983635799999999999976