HHsearch alignment for GI: 254780461 and conserved domain: cd00828
>cd00828 elong_cond_enzymes "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases.They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues.
Probab=100.00 E-value=0 Score=663.70 Aligned_cols=395 Identities=34% Similarity=0.484 Sum_probs=340.5
Q ss_pred CCEEEEEEEEECCCCCC---HHHHHHHHHCCCCCCEECCCCCCCCCCEEECCEECCCHHHCCCHHHHHHCCHHHHHHHHH
Q ss_conf 72899933267088989---999999998188762336775754785124540147866848989997249999999999
Q gi|254780461|r 2 RRVAVTGMGIVSSIGNN---VSEVAISLREARSGITFSEDFAKFGFRCQVWGKPLLNAAELIDRKAMRFLSQGGTWGHLA 78 (406)
Q Consensus 2 ~rV~ItG~G~v~p~G~~---~~e~w~~L~~G~sgi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~r~~d~~~~l~l~a 78 (406)
T Consensus 1 ~RVvItGiG~~~P~G~g~~~~~~fW~~L~~G~s~i~~~~~~~~-~~~~~~~g~v~~~~~~~~~~~~~~~~d~~~~~~l~a 79 (407)
T cd00828 1 SRVVITGIGVVSPHGEGCDEVEEFWEALREGRSGIAPVARLKS-RFDRGVAGQIPTGDIPGWDAKRTGIVDRTTLLALVA 79 (407)
T ss_pred CCEEEEECEEECCCCCCCCCHHHHHHHHHCCCCEEECCCCCCC-CCCCEEEEECCCCCCCCCCHHHHHHCCHHHHHHHHH
T ss_conf 9299981718897988989999999999769976458985546-787238664788773558988987459999999999
Q ss_pred HHHHHHHHCCCC-CCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCC-CCCCC
Q ss_conf 999753410133-2222333320563256763014567788875125221232001223323567787763122-33333
Q gi|254780461|r 79 MQEAITDSRLQP-CEITHERTGLIAGSGGPSTKCIVSAADLTREHCSTRRIGPFAVPKAMSSTASATLSTWFKI-RGTSY 156 (406)
Q Consensus 79 a~~Al~dAGl~~-~~~~~~r~gv~vgt~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~~is~~~gl-~Gp~~ 156 (406)
T Consensus 80 a~~Al~dAGl~~~~~~~~~r~gv~~gs~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~a~~i~~~~~~~~Gp~~ 156 (407)
T cd00828 80 TEEALADAGITDPYEVHPSEVGVVVGSGMGGLRFLRRGGKLDARAVN-PYVSPKW--MLSPNTVAGWVNILLLSSHGPIK 156 (407)
T ss_pred HHHHHHHCCCCCHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCC-CCCCHHH--CCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 99999967999645527876699999677438889988776554058-7325023--01422488999998587889852
Q ss_pred CCCCCCCCCCCCCCCEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEE
Q ss_conf 33333444433432100113456055788731345667532222221223346786622322235666664131265144
Q gi|254780461|r 157 SISSACATSAHCIGNAAELIQSGKQDIMFAGGQEDLDWTMSNLFDAMGAMSSHFNHDPCSASRPYDSRRDGFVISGGAAV 236 (406)
Q Consensus 157 ti~~acaSgl~Al~~A~~~L~~G~~D~aivGg~d~~~~~~~~~f~~~~~ls~~~~~~p~~~~rPFd~~~~G~~~gEGa~~ 236 (406)
T Consensus 157 tv~tACaSsl~Ai~~A~~~I~~G~~d~aivGg~~~~~~~~~~~f~~~~~ls~~-~~~p~~~~rPFD~~rdG~v~gEGa~~ 235 (407)
T cd00828 157 TPVGACATALEALDLAVEAIRSGKADIVVVGGVEDPLEEGLSGFANMGALSTA-EEEPEEMSRPFDETRDGFVEAEGAGV 235 (407)
T ss_pred CEECHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCC-CCCCCCCEEECCCCCCCEEECCCCEE
T ss_conf 65035079999999996662368514466431223563667999874454227-89988751303667898683485217
Q ss_pred EECCCHHHHCCCCCCCCCEEEEEEEECCCCCCCC-CCHHHHHHHHHHHHHHH---HCCCCEEEECCCCCCCCCCCHHHHH
Q ss_conf 3112213201100112320122101026521234-43357789887542100---1002102210245554442001222
Q gi|254780461|r 237 IVLEEMERAKARGAKIYAELTGYGSTCDGDDMVS-PSGEGAIRCMRQALSSV---EEPVDYINTHGTATPKGDKKEVEAI 312 (406)
Q Consensus 237 ~vLe~~~~A~~rGa~i~a~i~g~~~~~d~~~~~~-p~~~g~~~~i~~Al~~a---~~~i~~i~~hgtgt~~~D~~E~~ai 312 (406)
T Consensus 236 lvLe~~~~A~~rg~~i~a~i~g~~~~~dg~~~~~~~~~~~~~~~~~~Al~~A~i~~~~i~yI~aHgtgT~~gD~~E~~Al 315 (407)
T cd00828 236 LVLERAELALARGAPIYGRVAGTASTTDGAGRSVPAGGKGIARAIRTALAKAGLSLDDLDVISAHGTSTPANDVAESRAI 315 (407)
T ss_pred EEEEEHHHHHHCCCEEEEEECCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHH
T ss_conf 76504866766889799964364786689888779862678999999999719995456389951676866699999999
Q ss_pred HCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCEEEEEC
Q ss_conf 202355--443364752101323589999999999999871840786888889766788873799-88558835899935
Q gi|254780461|r 313 REVFKG--NIPYIQSTKSLTGHSLGAAGAQEAIYCLIMMQERFIGESKNIEEIDPEFKGIPIVRK-RIDNAKIDTVLSNS 389 (406)
Q Consensus 313 ~~~f~~--~~~~v~s~K~~~GH~~gasG~~~~~~~~~~l~~g~ipp~~n~~~~~~~~~~l~~v~~-~~~~~~~~~al~~s 389 (406)
T Consensus 316 ~~~f~~~~~~~~i~S~K~~~GH~~~aaG~~~li~~~l~l~~~~ippt~n~~~~~p~~~~~~~~~~~~~~~~~~~~a~~ns 395 (407)
T cd00828 316 AEVAGALGAPLPVTAQKALFGHSKGAAGALQLIGALQSLEHGLIPPTANLDDVDPDVEHLSVVGLSRDLNLKVRAALVNA 395 (407)
T ss_pred HHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
T ss_conf 99862137887044501230316789999999999999843971999998999976561337776876889997999978
Q ss_pred CCCCCEEEEEEE
Q ss_conf 567773679999
Q gi|254780461|r 390 FGFGGTNATLVF 401 (406)
Q Consensus 390 ~GfGG~n~~~vl 401 (406)
T Consensus 396 fGfGG~Na~lvl 407 (407)
T cd00828 396 FGFGGSNAALVL 407 (407)
T ss_pred CCCCCEEEEEEC
T ss_conf 356805078969