HHsearch alignment for GI: 254780461 and conserved domain: cd00829
>cd00829 SCP-x_thiolase Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein.
Probab=99.74 E-value=6.4e-17 Score=124.66 Aligned_cols=246 Identities=22% Similarity=0.296 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999975341013322223333205632567630145677888751252212320012233235677877631
Q gi|254780461|r 70 QGGTWGHLAMQEAITDSRLQPCEITHERTGLIAGSGGPSTKCIVSAADLTREHCSTRRIGPFAVPKAMSSTASATLSTWF 149 (406)
Q Consensus 70 ~~~~l~l~aa~~Al~dAGl~~~~~~~~r~gv~vgt~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~~is~~~ 149 (406)
T Consensus 15 s~~eL~~~a~~~Al~dagi~~~~ID----~v~~g~~~~~~~---------------------------~~~~~~~~a~~~ 63 (375)
T cd00829 15 SPLELAAEAARAALDDAGLEPADID----AVVVGNAAGGRF---------------------------QSFPGALIAEYL 63 (375)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHC----EEEEEECCCCCC---------------------------CCHHHHHHHHHC
T ss_conf 9999999999999998391989949----999991287553---------------------------476999999982
Q ss_pred CCC-CCCCCCCCCCCCCCCCCCCEECCCCCCEEEEEEEECCCCCCCCCC-CCCC-CC-----------C--------CC-
Q ss_conf 223-333333333444433432100113456055788731345667532-2222-21-----------2--------23-
Q gi|254780461|r 150 KIR-GTSYSISSACATSAHCIGNAAELIQSGKQDIMFAGGQEDLDWTMS-NLFD-AM-----------G--------AM- 206 (406)
Q Consensus 150 gl~-Gp~~ti~~acaSgl~Al~~A~~~L~~G~~D~aivGg~d~~~~~~~-~~f~-~~-----------~--------~l- 206 (406)
T Consensus 64 G~~~~~~~~v~~~c~Sg~~ai~~Aa~~I~~G~~~~vl~~G~Es~s~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 143 (375)
T cd00829 64 GLLGKPATRVEAAGASGSAAVRAAAAAIASGLADVVLVVGAEKMSDVPTGDEAGGRASDLEWEGPEPPGGLTPPALYALA 143 (375)
T ss_pred CCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHH
T ss_conf 99998658868988699999999999997799998999987516778765554445677203332024466578999999
Q ss_pred C----CCC------------------CCCCCC------------CCC----CCCCCCCCEEECCCEEEEECCCHHHHCCC
Q ss_conf 3----467------------------866223------------222----35666664131265144311221320110
Q gi|254780461|r 207 S----SHF------------------NHDPCS------------ASR----PYDSRRDGFVISGGAAVIVLEEMERAKAR 248 (406)
Q Consensus 207 s----~~~------------------~~~p~~------------~~r----PFd~~~~G~~~gEGa~~~vLe~~~~A~~r 248 (406)
T Consensus 144 a~~~~~~~g~~re~~~~~a~~~~~~A~~np~A~~~~~~t~e~~~~~~~i~~Pl-~~~~~~~~~DGAaa~vl~s~~~A~~~ 222 (375)
T cd00829 144 ARRYMHRYGTTREDLAKVAVKNHRNAARNPYAQFRKPITVEDVLNSRMIADPL-RLLDCCPVSDGAAAVVLASEERAREL 222 (375)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCC-CHHHCCCCCCCCEEEEEECHHHHHHC
T ss_conf 99999997979999999999999864428612025885899982347644662-14315766664058999639999876
Q ss_pred CCCCCCEEEEEEEECCCCCCCCC----CHHHHHHHHHHHHHHH---HCCCCEEEECCCCCCCCCCCHHHHHHCCC-CCC-
Q ss_conf 01123201221010265212344----3357789887542100---10021022102455544420012222023-554-
Q gi|254780461|r 249 GAKIYAELTGYGSTCDGDDMVSP----SGEGAIRCMRQALSSV---EEPVDYINTHGTATPKGDKKEVEAIREVF-KGN- 319 (406)
Q Consensus 249 Ga~i~a~i~g~~~~~d~~~~~~p----~~~g~~~~i~~Al~~a---~~~i~~i~~hgtgt~~~D~~E~~ai~~~f-~~~- 319 (406)
T Consensus 223 ~~~p-~~i~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~al~~aGl~~~DiD~~Ei~eaFa----~~~l~~~e~lGl~~~g 297 (375)
T cd00829 223 TDRP-VWILGVGAASDTPSLSERDDFLSLDAARLAARRAYKMAGITPDDIDVAELYDCFT----IAELLALEDLGFCEKG 297 (375)
T ss_pred CCCC-EEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHCCEEEECCCCH----HHHHHHHHHCCCCCCC
T ss_conf 9993-7999999995265435678522232599999999998199978765642015766----9999999980999777
Q ss_pred ---------------CCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf ---------------433647521--013235899999999999998718
Q gi|254780461|r 320 ---------------IPYIQSTKS--LTGHSLGAAGAQEAIYCLIMMQER 352 (406)
Q Consensus 320 ---------------~~~v~s~K~--~~GH~~gasG~~~~~~~~~~l~~g 352 (406)
T Consensus 298 ~~~~~~~~g~~~~~G~~pvN~~GG~ia~Ghp~gasG~~~~~~~~~ql~~~ 347 (375)
T cd00829 298 EGGKLVREGDTAIGGDLPVNTSGGLLSKGHPLGATGLAQAVEAVRQLRGE 347 (375)
T ss_pred CHHHHHHCCCCCCCCCCEEECCCCHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 15667753785569982170885587649841078999999999998564