HHsearch alignment for GI: 254780461 and conserved domain: pfam00109
>pfam00109 ketoacyl-synt Beta-ketoacyl synthase, N-terminal domain. The structure of beta-ketoacyl synthase is similar to that of the thiolase family (pfam00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. The N-terminal domain contains most of the structures involved in dimer formation and also the active site cysteine.
Probab=100.00 E-value=0 Score=352.22 Aligned_cols=235 Identities=27% Similarity=0.333 Sum_probs=200.3
Q ss_pred CCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCEECCCC-CCCCCCEEECCEE-CCC--HHHC-CCHHHHHHCCHHHHHHH
Q ss_conf 72899933267088989999999998188762336775-7547851245401-478--6684-89899972499999999
Q gi|254780461|r 2 RRVAVTGMGIVSSIGNNVSEVAISLREARSGITFSEDF-AKFGFRCQVWGKP-LLN--AAEL-IDRKAMRFLSQGGTWGH 76 (406)
Q Consensus 2 ~rV~ItG~G~v~p~G~~~~e~w~~L~~G~sgi~~~~~~-~~~~~~~~~~g~~-~~~--~~~~-~~~~~~r~~d~~~~l~l 76 (406)
T Consensus 2 ~~VvITG~G~vtp~G~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 81 (243)
T pfam00109 2 EPVAITGMGCRFPGGVGPEEFWELLLAGRDAIREFPADLSGLYPPSRVAGEIYGFDFDAAFFGISPREAEAMDPQQRLAL 81 (243)
T ss_pred CCEEEECCEEECCCCCCHHHHHHHHHCCCCEEEECCCHHHHCCCCCCCCEECCCCCCCHHHCCCCHHHHHHCCHHHHHHH
T ss_conf 99999866889979899999999998599888746950644479876010146778781115989999985499999999
Q ss_pred HHHHHHHHHHCCCCCCCCC-CCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9999975341013322223-333205632567630145677888751252212320012233235677877631223333
Q gi|254780461|r 77 LAMQEAITDSRLQPCEITH-ERTGLIAGSGGPSTKCIVSAADLTREHCSTRRIGPFAVPKAMSSTASATLSTWFKIRGTS 155 (406)
Q Consensus 77 ~aa~~Al~dAGl~~~~~~~-~r~gv~vgt~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~~is~~~gl~Gp~ 155 (406)
T Consensus 82 ~aa~~Al~dAGl~~~~~~~~~~~gv~~G~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~~g~~Gp~ 157 (243)
T pfam00109 82 EAAWEALEDAGLDPASLRGSDRTGVFVGSGSGDYAELQA----LDSAGGPRRGSPYLTGAWMPSVAAGRISYRLGLRGPS 157 (243)
T ss_pred HHHHHHHHHCCCCHHHCCCCCCEEEEEEECCCCHHHHHH----HHCCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCCCC
T ss_conf 999999998499846727887289999864764899997----6303674334641105645117888998674157986
Q ss_pred CCCCCCCCCCCCCCCCEECCCCCCEEEEEEEECCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCE
Q ss_conf 333333444433432100113456055788731345-6675322222212233467866223222356666641312651
Q gi|254780461|r 156 YSISSACATSAHCIGNAAELIQSGKQDIMFAGGQED-LDWTMSNLFDAMGAMSSHFNHDPCSASRPYDSRRDGFVISGGA 234 (406)
Q Consensus 156 ~ti~~acaSgl~Al~~A~~~L~~G~~D~aivGg~d~-~~~~~~~~f~~~~~ls~~~~~~p~~~~rPFd~~~~G~~~gEGa 234 (406)
T Consensus 158 ~t~~~ACaSg~~AI~~A~~~I~~G~~d~~i~Gg~~~~~~~~~~~~f~~~~a~~~~-----~~~~rpfd~~~~G~v~GEGa 232 (243)
T pfam00109 158 VTVDTACSSSLVALHAAVRSIRRGECDLALAGGVEAPLTPGGFAGFSAAGALLSP-----DGPCKAFDPFADGFVRGEGV 232 (243)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHCCCCCCC-----CCCCCCCCCCCCCEEEEEEE
T ss_conf 4665520789999999997533698387999784155697899999974785797-----99988878999965536149
Q ss_pred EEEECCCHHHH
Q ss_conf 44311221320
Q gi|254780461|r 235 AVIVLEEMERA 245 (406)
Q Consensus 235 ~~~vLe~~~~A 245 (406)
T Consensus 233 a~lvLE~~e~A 243 (243)
T pfam00109 233 GAVLLKELSEA 243 (243)
T ss_pred EEEEEEEHHHC
T ss_conf 98999767639