RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780461|ref|YP_003064874.1| 3-oxoacyl-(acyl carrier
protein) synthase I [Candidatus Liberibacter asiaticus str. psy62]
(406 letters)
>gnl|CDD|181184 PRK07967, PRK07967, 3-oxoacyl-(acyl carrier protein) synthase I;
Reviewed.
Length = 406
Score = 719 bits (1858), Expect = 0.0
Identities = 263/406 (64%), Positives = 317/406 (78%)
Query: 1 MRRVAVTGMGIVSSIGNNVSEVAISLREARSGITFSEDFAKFGFRCQVWGKPLLNAAELI 60
MRRV +TG+GIVSSIGNN EV SLRE RSGITFS +FA+ G R QVWG L+ LI
Sbjct: 1 MRRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSPEFAEMGMRSQVWGNVKLDPTGLI 60
Query: 61 DRKAMRFLSQGGTWGHLAMQEAITDSRLQPCEITHERTGLIAGSGGPSTKCIVSAADLTR 120
DRK MRF+ + +LAM++AI D+ L ++++ RTGLIAGSGG ST+ V AAD R
Sbjct: 61 DRKVMRFMGDASAYAYLAMEQAIADAGLSEEQVSNPRTGLIAGSGGGSTRNQVEAADAMR 120
Query: 121 EHCSTRRIGPFAVPKAMSSTASATLSTWFKIRGTSYSISSACATSAHCIGNAAELIQSGK 180
+R+GP+AV KAM+ST SA L+T FKI+G +YSISSACATSAHCIGNA E IQ GK
Sbjct: 121 GPRGPKRVGPYAVTKAMASTVSACLATPFKIKGVNYSISSACATSAHCIGNAVEQIQLGK 180
Query: 181 QDIMFAGGQEDLDWTMSNLFDAMGAMSSHFNHDPCSASRPYDSRRDGFVISGGAAVIVLE 240
QDI+FAGG E+LDW MS LFDAMGA+S+ +N P ASR YD+ RDGFVI+GG V+V+E
Sbjct: 181 QDIVFAGGGEELDWEMSCLFDAMGALSTKYNDTPEKASRAYDANRDGFVIAGGGGVVVVE 240
Query: 241 EMERAKARGAKIYAELTGYGSTCDGDDMVSPSGEGAIRCMRQALSSVEEPVDYINTHGTA 300
E+E A ARGAKIYAE+ GYG+T DG DMV+PSGEGA+RCM+ AL++V+ P+DYINTHGT+
Sbjct: 241 ELEHALARGAKIYAEIVGYGATSDGYDMVAPSGEGAVRCMQMALATVDTPIDYINTHGTS 300
Query: 301 TPKGDKKEVEAIREVFKGNIPYIQSTKSLTGHSLGAAGAQEAIYCLIMMQERFIGESKNI 360
TP GD KE+ AIREVF P I +TKSLTGHSLGAAG QEAIY L+MM+ FI S NI
Sbjct: 301 TPVGDVKELGAIREVFGDKSPAISATKSLTGHSLGAAGVQEAIYSLLMMEHGFIAPSANI 360
Query: 361 EEIDPEFKGIPIVRKRIDNAKIDTVLSNSFGFGGTNATLVFRRYKG 406
EE+DP+ G+PIV + DNA++ TV+SNSFGFGGTNATLVFRRYKG
Sbjct: 361 EELDPQAAGMPIVTETTDNAELTTVMSNSFGFGGTNATLVFRRYKG 406
>gnl|CDD|180925 PRK07314, PRK07314, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 411
Score = 372 bits (959), Expect = e-104
Identities = 179/419 (42%), Positives = 247/419 (58%), Gaps = 22/419 (5%)
Query: 1 MRRVAVTGMGIVSSIGNNVSEVAISLREARSGITFSEDFAKFGFRCQVWGK-PLLNAAEL 59
RRV VTG+G VS +GN+V +L +SGI F ++ G+ N +
Sbjct: 1 KRRVVVTGLGAVSPLGNDVESTWKNLLAGKSGIGPITHFDTSDLAVKIAGEVKDFNPDDY 60
Query: 60 IDRKAMRFLSQGGTWGHLAMQEAITDSRLQPCEITHERTGLIAGSGGPSTKCIVSAADLT 119
+ RK R + + +G A ++A+ D+ L+ E +R G+I GSG + I
Sbjct: 61 MSRKEARRMDRFIQYGIAAAKQAVEDAGLEITEENADRIGVIIGSGIGGLETIEEQHITL 120
Query: 120 REHCSTRRIGPFAVPKAMSSTASATLSTWFKIRGTSYSISSACATSAHCIGNAAELIQSG 179
E RR+ PF VP A+ + A+ +S + +G ++SI +ACAT AH IG+AA LI G
Sbjct: 121 LEK-GPRRVSPFFVPMAIINMAAGHVSIRYGAKGPNHSIVTACATGAHAIGDAARLIAYG 179
Query: 180 KQDIMFAGGQEDLDWTMSNL----FDAMGAMSSHFNHDPCSASRPYDSRRDGFVISGGAA 235
D+M AGG E ++ L F A A+S+ N DP ASRP+D RDGFV+ GA
Sbjct: 180 DADVMVAGGAEA---AITPLGIAGFAAARALSTR-NDDPERASRPFDKDRDGFVMGEGAG 235
Query: 236 VIVLEEMERAKARGAKIYAELTGYGSTCDGDDMVSPS--GEGAIRCMRQALS----SVEE 289
++VLEE+E AKARGAKIYAE+ GYG T D M +P+ GEGA R M+ AL + E+
Sbjct: 236 ILVLEELEHAKARGAKIYAEVVGYGMTGDAYHMTAPAPDGEGAARAMKLALKDAGINPED 295
Query: 290 PVDYINTHGTATPKGDKKEVEAIREVFKGNIPY---IQSTKSLTGHSLGAAGAQEAIYCL 346
+DYIN HGT+TP GDK E +AI+ VF G Y + STKS+TGH LGAAGA EAI+ +
Sbjct: 296 -IDYINAHGTSTPAGDKAETQAIKRVF-GEHAYKVAVSSTKSMTGHLLGAAGAVEAIFSV 353
Query: 347 IMMQERFIGESKNIEEIDPEFKGIPIVRKRIDNAKIDTVLSNSFGFGGTNATLVFRRYK 405
+ ++++ I + N++ D E + V KID LSNSFGFGGTNA+LVF+RY+
Sbjct: 354 LAIRDQVIPPTINLDNPDEECD-LDYVPNEARERKIDYALSNSFGFGGTNASLVFKRYE 411
>gnl|CDD|163158 TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II.
FabB sequences should fall well below the noise cutoff
of this model.
Length = 407
Score = 363 bits (934), Expect = e-101
Identities = 173/416 (41%), Positives = 240/416 (57%), Gaps = 24/416 (5%)
Query: 2 RRVAVTGMGIVSSIGNNVSEVAISLREARSGITFSEDFAKFGFRCQVWGK-PLLNAAELI 60
RRV VTG+G V+ +GN V E +L +SGI F ++ G+ + + I
Sbjct: 1 RRVVVTGLGAVTPLGNGVEEFWENLLAGKSGIGPITRFDASDLPVKIAGEVKDFDPEDYI 60
Query: 61 DRKAMRFLSQGGTWGHLAM---QEAITDSRLQPCEITHERTGLIAGSGGPSTKCIVSAAD 117
D+K R + + A+ +EA+ DS L E ER G+I GSG + I
Sbjct: 61 DKKEARRMD---RFIQYALAAAKEAVEDSGLDIEEEDAERVGVIIGSGIGGLETIEEQHI 117
Query: 118 LTREHCSTRRIGPFAVPKAMSSTASATLSTWFKIRGTSYSISSACATSAHCIGNAAELIQ 177
+ E RR+ PF +P ++ + A+ +S + +G ++++ +ACAT H IG+A LIQ
Sbjct: 118 VLLEK-GPRRVSPFFIPMSIINMAAGQISIRYGAKGPNHAVVTACATGTHAIGDAFRLIQ 176
Query: 178 SGKQDIMFAGGQEDLDWTMSNL----FDAMGAMSSHFNHDPCSASRPYDSRRDGFVISGG 233
G D+M AGG E ++ L F AM A+S+ N DP ASRP+D RDGFV+ G
Sbjct: 177 RGDADVMIAGGAEA---AITPLGIAGFAAMKALST-RNDDPEKASRPFDKDRDGFVMGEG 232
Query: 234 AAVIVLEEMERAKARGAKIYAELTGYGSTCDGDDMVSPS--GEGAIRCMRQALSSVE--- 288
A V+VLEE+E AKARGAKIYAE+ GYG + D + +P+ GEGA R MR AL
Sbjct: 233 AGVLVLEELEHAKARGAKIYAEIVGYGMSGDAYHITAPAPEGEGAARAMRAALKDAGINP 292
Query: 289 EPVDYINTHGTATPKGDKKEVEAIREVFKGNIP--YIQSTKSLTGHSLGAAGAQEAIYCL 346
E VDYIN HGT+TP GDK E +AI+ VF + + STKS+TGH LGAAGA EAI+ +
Sbjct: 293 EDVDYINAHGTSTPLGDKAETKAIKRVFGDHAYKLAVSSTKSMTGHLLGAAGAIEAIFTV 352
Query: 347 IMMQERFIGESKNIEEIDPEFKGIPIVRKRIDNAKIDTVLSNSFGFGGTNATLVFR 402
+ +++ + + N++ DPE + V KID LSNSFGFGG NA+LVF+
Sbjct: 353 LAIRDGVVPPTINLDNPDPECD-LDYVPNEARERKIDYALSNSFGFGGHNASLVFK 407
>gnl|CDD|180532 PRK06333, PRK06333, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 424
Score = 310 bits (797), Expect = 3e-85
Identities = 150/423 (35%), Positives = 219/423 (51%), Gaps = 18/423 (4%)
Query: 1 MRRVAVTGMGIVSSIGNNVSEVAISLREARSGITFSEDFAKFGFRCQVWG---------K 51
+R+ VTGMG VS +G V L +SGI DF ++ G +
Sbjct: 3 KKRIVVTGMGAVSPLGCGVETFWQRLLAGQSGIRTLTDFPVGDLATKIGGQVPDLAEDAE 62
Query: 52 PLLNAAELIDRKAMRFLSQGGTWGHLAMQEAITDSRLQPCEITH-ERTGLIAGSGGPSTK 110
+ +D K R + + + A +EA+ + P + ERT I GSG
Sbjct: 63 AGFDPDRYLDPKDQRKMDRFILFAMAAAKEALAQAGWDPDTLEDRERTATIIGSGVGGFP 122
Query: 111 CIVSAADLTREHCSTRRIGPFAVPKAMSSTASATLSTWFKIRGTSYSISSACATSAHCIG 170
I A RR+ PF +P +++ A+ +S + +G + +ACA IG
Sbjct: 123 AIAEAVRTLDSR-GPRRLSPFTIPSFLTNMAAGHVSIRYGFKGPLGAPVTACAAGVQAIG 181
Query: 171 NAAELIQSGKQDIMFAGGQEDLDWTMS-NLFDAMGAMSSHFNHDPCSASRPYDSRRDGFV 229
+AA LI+SG+ D+ GG E +S F A A+S+ FN P ASRP+D RDGFV
Sbjct: 182 DAARLIRSGEADVAVCGGTEAAIDRVSLAGFAAARALSTRFNDAPEQASRPFDRDRDGFV 241
Query: 230 ISGGAAVIVLEEMERAKARGAKIYAELTGYGSTCDGDDMVSP--SGEGAIRCMRQALSSV 287
+ GA ++V+E +E A ARGA AEL GYG++ D M + GEGA R M AL
Sbjct: 242 MGEGAGILVIETLEHALARGAPPLAELVGYGTSADAYHMTAGPEDGEGARRAMLIALRQA 301
Query: 288 ---EEPVDYINTHGTATPKGDKKEVEAIREVFK-GNIPYIQSTKSLTGHSLGAAGAQEAI 343
E V ++N H T+TP GD EV AI++VF + + STKS TGH LGAAG EAI
Sbjct: 302 GIPPEEVQHLNAHATSTPVGDLGEVAAIKKVFGHVSGLAVSSTKSATGHLLGAAGGVEAI 361
Query: 344 YCLIMMQERFIGESKNIEEIDPEFKGIPIVRKRIDNAKIDTVLSNSFGFGGTNATLVFRR 403
+ ++ ++++ + N+E DP +G+ +V + +D LSN FGFGG NA+++FRR
Sbjct: 362 FTILALRDQIAPPTLNLENPDPAAEGLDVVANKARPMDMDYALSNGFGFGGVNASILFRR 421
Query: 404 YKG 406
++
Sbjct: 422 WEP 424
>gnl|CDD|185415 PTZ00050, PTZ00050, 3-oxoacyl-acyl carrier protein synthase;
Provisional.
Length = 421
Score = 307 bits (787), Expect = 5e-84
Identities = 154/422 (36%), Positives = 212/422 (50%), Gaps = 29/422 (6%)
Query: 11 IVSSIGNNVSEVAISLREARSGITFSEDFAKFGFRCQVWGKPLLNA-------------A 57
+V+ +G +L +SGI +F KF C K L N
Sbjct: 1 VVTPLGVGAESTWEALIAGKSGIRKLTEFPKFLPDCIPEQKALENLVAAMPCQIAAEVDQ 60
Query: 58 ELIDRKAMRFLSQGGTWGHLAM---QEAITDSRLQPC-EITHERTGLIAGSGGPSTKCIV 113
D + H AM +EA+ D++L E ER G+ GSG S +
Sbjct: 61 SEFDPSDFAPTKRESRATHFAMAAAREALADAKLDILSEKDQERIGVNIGSGIGSLADLT 120
Query: 114 SAADLTREHCSTRRIGPFAVPKAMSSTASATLSTWFKIRGTSYSISSACATSAHCIGNAA 173
E R+ P+ +PK + + A+ ++ K++G S S +ACAT AHCIG A
Sbjct: 121 DEMKTLYEK-GHSRVSPYFIPKILGNMAAGLVAIKHKLKGPSGSAVTACATGAHCIGEAF 179
Query: 174 ELIQSGKQDIMFAGGQEDLDWTMSNL-FDAMGAMSSHFNHDPCSASRPYDSRRDGFVISG 232
I+ G+ DIM GG E +S F M A+ + +N DP ASRP+D R GFV+
Sbjct: 180 RWIKYGEADIMICGGTEASITPVSFAGFSRMRALCTKYNDDPQRASRPFDKDRAGFVMGE 239
Query: 233 GAAVIVLEEMERAKARGAKIYAELTGYGSTCDGDDMVSP--SGEGAIRCMRQALSSVEEP 290
GA ++VLEE+E A RGAKIYAE+ GYGS+ D + +P G GA RCM AL
Sbjct: 240 GAGILVLEELEHALRRGAKIYAEIRGYGSSSDAHHITAPHPDGRGARRCMENALKDGANI 299
Query: 291 ----VDYINTHGTATPKGDKKEVEAIREVFKGNIP---YIQSTKSLTGHSLGAAGAQEAI 343
VDY+N H T+TP GDK E++AI++VF + Y+ STK GH LGAAGA E+I
Sbjct: 300 NINDVDYVNAHATSTPIGDKIELKAIKKVFGDSGAPKLYVSSTKGGLGHLLGAAGAVESI 359
Query: 344 YCLIMMQERFIGESKNIEEIDPE-FKGIPIVRKRIDNAKIDTVLSNSFGFGGTNATLVFR 402
++ + E+ I + N+E D E + + ID VLS SFGFGG N L+F
Sbjct: 360 VTILSLYEQIIPPTINLENPDAECDLNLVQGKTAHPLQSIDAVLSTSFGFGGVNTALLFT 419
Query: 403 RY 404
+Y
Sbjct: 420 KY 421
>gnl|CDD|181424 PRK08439, PRK08439, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 406
Score = 282 bits (724), Expect = 9e-77
Identities = 154/422 (36%), Positives = 227/422 (53%), Gaps = 34/422 (8%)
Query: 1 MRRVAVTGMGIVSSIGNNVSEVAISLREARSGITFSEDFAKFGFRCQVWGK-------PL 53
M+RV VTG+G+++S+G N ++ GI F F Q+ G+ +
Sbjct: 1 MKRVVVTGIGMINSLGLNKESSFKAICNGECGIKKITLFDASDFPVQIAGEITDFDPTEV 60
Query: 54 LNAAELIDRKAMRFLSQGGTWGHLAMQEAITDSRLQPCEITHERTGLIAGSG--GPSTKC 111
++ E+ +KA RF+ G A +EA+ D+ P E+ ER G+ + SG G
Sbjct: 61 MDPKEV--KKADRFIQLGLK----AAREAMKDAGFLPEELDAERFGVSSASGIGGLPN-- 112
Query: 112 IVSAADLTREHCSTRRIGPFAVPKAMSSTASATLSTWFKIRGTSYSISSACATSAHCIGN 171
+ + R+I PF +P A+ + +S ++G + S +ACA H I
Sbjct: 113 -IEKNSIICFEKGPRKISPFFIPSALVNMLGGFISIEHGLKGPNLSSVTACAAGTHAIIE 171
Query: 172 AAELIQSGKQDIMFAGGQEDLDWTMSNL----FDAMGAMSSHFNHDPCSASRPYDSRRDG 227
A + I G D M G E + + F AM A+S+ N DP ASRP+D RDG
Sbjct: 172 AVKTIMLGGADKMLVVGAES---AICPVGIGGFAAMKALSTR-NDDPKKASRPFDKDRDG 227
Query: 228 FVISGGAAVIVLEEMERAKARGAKIYAELTGYGSTCDGDDMVSPSGEGAIRCMRQALSSV 287
FV+ GA +VLEE E AK RGAKIYAE+ G+G + D + + SP+ EG +R M+ AL
Sbjct: 228 FVMGEGAGALVLEEYESAKKRGAKIYAEIIGFGESGDANHITSPAPEGPLRAMKAALEMA 287
Query: 288 EEP-VDYINTHGTATPKGDKKEVEAIREVF--KGNIPYIQSTKSLTGHSLGAAGAQEAIY 344
P +DYIN HGT+TP DK E A++E+F K +P + STK GH LGAAGA EA+
Sbjct: 288 GNPKIDYINAHGTSTPYNDKNETAALKELFGSKEKVPPVSSTKGQIGHCLGAAGAIEAVI 347
Query: 345 CLIMMQERFIGESKNIEEIDPE--FKGIPIVRKRIDNAKIDTVLSNSFGFGGTNATLVFR 402
++ M++ + + N E DPE IP V ++ A+++ V+SNSFGFGGTN ++F+
Sbjct: 348 SIMAMRDGILPPTINQETPDPECDLDYIPNVARK---AELNVVMSNSFGFGGTNGVVIFK 404
Query: 403 RY 404
+
Sbjct: 405 KV 406
>gnl|CDD|178430 PLN02836, PLN02836, 3-oxoacyl-[acyl-carrier-protein] synthase.
Length = 437
Score = 278 bits (713), Expect = 2e-75
Identities = 165/435 (37%), Positives = 223/435 (51%), Gaps = 42/435 (9%)
Query: 2 RRVAVTGMGIVSSIGNNVSEVAISLREARSGI-TFSEDFAKFGFRCQVWGKPLLN----- 55
RRV VTG+G+V+ +G V L G+ ++D K + L+
Sbjct: 6 RRVVVTGLGLVTPLGCGVETTWRRLIAGECGVRALTQDDLKMKSEDEETQLYTLDQLPSR 65
Query: 56 ----------------AAELIDRKAMRFLSQGGTWGHLAMQEAITDSRLQPCEITH-ERT 98
L R + RF+ + A EA++D+R P E ERT
Sbjct: 66 VAALVPRGTGPGDFDEELWLNSRSSSRFIG----YALCAADEALSDARWLPSEDEAKERT 121
Query: 99 GLIAGSGGPSTKCIVSAADLTREHCSTRRIGPFAVPKAMSSTASATLSTWFKIRGTSYSI 158
G+ G G S I+ AA L E RR+ PF VP+ + + A+ +S + +G +++
Sbjct: 122 GVSIGGGIGSITDILEAAQLICEK-RLRRLSPFFVPRILINMAAGHVSIRYGFQGPNHAA 180
Query: 159 SSACATSAHCIGNAAELIQSGKQDIMFAGGQED-LDWTMSNLFDAMGAMSSHFNHDPCSA 217
+ACAT AH IG+A +IQ G D+M AGG E +D F A+S+ FN P A
Sbjct: 181 VTACATGAHSIGDAFRMIQFGDADVMVAGGTESSIDALSIAGFSRSRALSTKFNSCPTEA 240
Query: 218 SRPYDSRRDGFVISGGAAVIVLEEMERAKARGAKIYAELTGYGSTCDGDDMVSPS--GEG 275
SRP+D RDGFVI GA V+VLEE+E AK RGAKIYAE+ GYG + D + P G G
Sbjct: 241 SRPFDCDRDGFVIGEGAGVLVLEELEHAKRRGAKIYAEVRGYGMSGDAHHITQPHEDGRG 300
Query: 276 AIRCMRQAL-SSVEEP--VDYINTHGTATPKGDKKEVEAIREVFKGNIPY----IQSTKS 328
A+ M +AL S P VDY+N H T+TP GD E AI+ VF + STK
Sbjct: 301 AVLAMTRALQQSGLHPNQVDYVNAHATSTPLGDAVEARAIKTVFSEHATSGGLAFSSTKG 360
Query: 329 LTGHSLGAAGAQEAIYCLIMMQERFIGESKNIEEIDPEFKG--IPIVRKRIDNAKIDTVL 386
TGH LGAAGA EAI+ ++ + + N+E DP F +P+ + I L
Sbjct: 361 ATGHLLGAAGAVEAIFSVLAIHHGIAPPTLNLERPDPIFDDGFVPLTASKAML--IRAAL 418
Query: 387 SNSFGFGGTNATLVF 401
SNSFGFGGTNA+L+F
Sbjct: 419 SNSFGFGGTNASLLF 433
>gnl|CDD|181657 PRK09116, PRK09116, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 405
Score = 264 bits (678), Expect = 2e-71
Identities = 140/410 (34%), Positives = 209/410 (50%), Gaps = 13/410 (3%)
Query: 1 MRRVAVTGMGIVSSIGNNVSEVAISLREARSGITFSEDFAKF-GFRCQVWGKPLLNAA-- 57
MRRV VTGMG V+++G + +A L+ R+ + ++ ++ G ++ P+ +
Sbjct: 1 MRRVVVTGMGGVTALGEDWQTIAARLKAGRNAVRRMPEWDRYDGLNTRL-AAPIDDFELP 59
Query: 58 ELIDRKAMRFLSQGGTWGHLAMQEAITDSRL--QPCEITHERTGLIAGSGGPSTKCIVSA 115
RK +R + + A + A+ D+ L P +T R G+ GS ST I +
Sbjct: 60 AHYTRKKIRSMGRVSLMATRASELALEDAGLLGDPI-LTDGRMGIAYGSSTGSTDPIGAF 118
Query: 116 ADLTREHCSTRRIGPFAVPKAMSSTASATLSTWFKIRGTSYSISSACATSAHCIGNAAEL 175
+ S I + M T + + +F ++G SSAC + + IG A E
Sbjct: 119 GTML-LEGSMSGITATTYVRMMPHTTAVNVGLFFGLKGRVIPTSSACTSGSQGIGYAYEA 177
Query: 176 IQSGKQDIMFAGGQEDLDWTMSNLFDAMGAMSSHFNHDPCSASRPYDSRRDGFVISGGAA 235
I+ G Q +M AGG E+L T + +FD + A S+ N P RP+D+ RDG VI GA
Sbjct: 178 IKYGYQTVMLAGGAEELCPTEAAVFDTLFATSTR-NDAPELTPRPFDANRDGLVIGEGAG 236
Query: 236 VIVLEEMERAKARGAKIYAELTGYGSTCDGDDMVSPSGEGAIRCMRQALSSVE---EPVD 292
+VLEE+E AKARGA IYAE+ G+G+ DG + P E M AL E +
Sbjct: 237 TLVLEELEHAKARGATIYAEIVGFGTNSDGAHVTQPQAETMQIAMELALKDAGLAPEDIG 296
Query: 293 YINTHGTATPKGDKKEVEAIREVFKGNIPYIQSTKSLTGHSLGAAGAQEAIYCLIMMQER 352
Y+N HGTAT +GD E +A VF +P I S KS GH+LGA GA EA + MM E
Sbjct: 297 YVNAHGTATDRGDIAESQATAAVFGARMP-ISSLKSYFGHTLGACGALEAWMSIEMMNEG 355
Query: 353 FIGESKNIEEIDPEFKGIPIVRKRIDNAKIDTVLSNSFGFGGTNATLVFR 402
+ + N+ ++DP + + + V+SN+F FGG N +L+F+
Sbjct: 356 WFAPTLNLTQVDPACGALDYIMGEAREIDTEYVMSNNFAFGGINTSLIFK 405
>gnl|CDD|178384 PLN02787, PLN02787, 3-oxoacyl-[acyl-carrier-protein] synthase II.
Length = 540
Score = 241 bits (615), Expect = 4e-64
Identities = 160/423 (37%), Positives = 225/423 (53%), Gaps = 30/423 (7%)
Query: 2 RRVAVTGMGIVSSIGNNVSEVAISLREARSGITFSEDF--AKF---------GFRCQVWG 50
RRV VTGMG+VS +G++ +L E SGI+ E F ++F F W
Sbjct: 129 RRVVVTGMGVVSPLGHDPDVFYNNLLEGVSGISEIERFDCSQFPTRIAGEIKSFSTDGWV 188
Query: 51 KPLLNAAELIDRKAMRFLSQGGTWGHLAMQEA-ITDSRLQPCEITHERTGLIAGSGGPST 109
P L+ ++ +F+ T G A+ + IT+ ++ E+ + G++ GS
Sbjct: 189 APKLS------KRMDKFMLYLLTAGKKALADGGITEDVMK--ELDKTKCGVLIGSAMGGM 240
Query: 110 KCIVSAADLTREHCSTRRIGPFAVPKAMSSTASATLSTWFKIRGTSYSISSACATSAHCI 169
K A + R S R++ PF VP A ++ SA L+ G +YSIS+ACATS CI
Sbjct: 241 KVFNDAIEALR--ISYRKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCI 298
Query: 170 GNAAELIQSGKQDIMFAGGQEDLDWTMS-NLFDAMGAMSSHFNHDPCSASRPYDSRRDGF 228
NAA I G+ D+M GG + + F A A+S N DP ASRP+D RDGF
Sbjct: 299 LNAANHIIRGEADVMLCGGSDAAIIPIGLGGFVACRALSQR-NDDPTKASRPWDMNRDGF 357
Query: 229 VISGGAAVIVLEEMERAKARGAKIYAELTGYGSTCDGDDMVSPSGEGA--IRCMRQALSS 286
V+ GA V++LEE+E AK RGA IYAE G TCD M P EGA I C+ +AL+
Sbjct: 358 VMGEGAGVLLLEELEHAKKRGANIYAEFLGGSFTCDAYHMTEPHPEGAGVILCIEKALAQ 417
Query: 287 V---EEPVDYINTHGTATPKGDKKEVEAIREVFKGNIPY-IQSTKSLTGHSLGAAGAQEA 342
+E V+YIN H T+T GD KE +A+ F N + STKS+ GH LGAAGA EA
Sbjct: 418 SGVSKEDVNYINAHATSTKAGDLKEYQALMRCFGQNPELRVNSTKSMIGHLLGAAGAVEA 477
Query: 343 IYCLIMMQERFIGESKNIEEIDPEFKGIPIVRKRIDNAKIDTVLSNSFGFGGTNATLVFR 402
I + ++ ++ + N+E + +V + + I LSNSFGFGG N++++F
Sbjct: 478 IATVQAIRTGWVHPNINLENPESGVDTKVLVGPKKERLDIKVALSNSFGFGGHNSSILFA 537
Query: 403 RYK 405
YK
Sbjct: 538 PYK 540
>gnl|CDD|180839 PRK07103, PRK07103, polyketide beta-ketoacyl:acyl carrier protein
synthase; Validated.
Length = 410
Score = 239 bits (611), Expect = 1e-63
Identities = 139/423 (32%), Positives = 196/423 (46%), Gaps = 33/423 (7%)
Query: 1 MRRVAVTGMGIVSSIGNNVSEVAISLREARSGITFSEDFAKFGFRCQVWGK--PLLNA-- 56
M V VTG+G+VS+IG A +L R + G + A
Sbjct: 1 MDEVVVTGVGVVSAIGQGRPSFAAALLAGRHAFGVMRRPGRQVPDDAGAGLASAFIGAEL 60
Query: 57 -----AELIDRKAMRFLSQGGTWGHLAMQEAITDSRLQPCEITHERTGLI-AGSGGPSTK 110
E +D K +R S A +EA D+ L P + +R GL+ GS
Sbjct: 61 DSLALPERLDAKLLRRASLSAQAALAAAREAWRDAALGP--VDPDRIGLVVGGSN----- 113
Query: 111 CIVSAADLTREHCSTRRIGPFAVPKA----MSSTASATLSTWFKIRGTSYSISSACATSA 166
+ + H + R F P M + S F IRG +++ A A+
Sbjct: 114 --LQQREQALVHETYRDRPAFLRPSYGLSFMDTDLVGLCSEQFGIRGEGFTVGGASASGQ 171
Query: 167 HCIGNAAELIQSGKQDIMFA-GGQEDLDWTMSNLFDAMGAM-SSHFNHDPCSASRPYDSR 224
+ AA L+QSG D A G DL + ++GAM S F +P +A RP+D
Sbjct: 172 LAVIQAARLVQSGSVDACIAVGALMDLSYWECQALRSLGAMGSDRFADEPEAACRPFDQD 231
Query: 225 RDGFVISGGAAVIVLEEMERAKARGAKIYAELTGYGSTCDGDDMVSPSGEGAIRCMRQAL 284
RDGF+ +VLE E A+ RGA+ YA+L G+ D + PS EG +R +R AL
Sbjct: 232 RDGFIYGEACGAVVLESAESARRRGARPYAKLLGWSMRLDANRGPDPSLEGEMRVIRAAL 291
Query: 285 SSVE---EPVDYINTHGTATPKGDKKEVEAIREVFKGNIPYIQSTKSLTGHSLGAAGAQE 341
E +DY+N HGT +P GD+ E+ A+ + +I +TKSLTGH L AAG E
Sbjct: 292 RRAGLGPEDIDYVNPHGTGSPLGDETELAALFASGLAH-AWINATKSLTGHGLSAAGIVE 350
Query: 342 AIYCLIMMQERFIGESKNIEE-IDPEFKGIPIVRKRIDNAKIDTVLSNSFGFGGTNATLV 400
I L+ M+ F+ S+N++E ID F+ V ++A+I LS SFGFGG N LV
Sbjct: 351 LIATLLQMRAGFLHPSRNLDEPIDERFR---WVGSTAESARIRYALSLSFGFGGINTALV 407
Query: 401 FRR 403
R
Sbjct: 408 LER 410
>gnl|CDD|181539 PRK08722, PRK08722, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 414
Score = 229 bits (586), Expect = 8e-61
Identities = 154/416 (37%), Positives = 222/416 (53%), Gaps = 20/416 (4%)
Query: 2 RRVAVTGMGIVSSIGNNVSEVAISLREARSGITFSEDFAKFGFRCQVWGK-PLLNAAELI 60
RRV VTGMG++S +GN V +L +SGI E F F + G N E +
Sbjct: 4 RRVVVTGMGMLSPVGNTVESSWKALLAGQSGIVNIEHFDTTNFSTRFAGLVKDFNCEEYM 63
Query: 61 DRKAMRFLSQGGTWGHLAMQEAITDSRLQPCEITHERTGLIAGSGGPSTKCIVSAADLTR 120
+K R + +G A +A+ DS L+ E R G+ GSG I +
Sbjct: 64 SKKDARKMDLFIQYGIAAGIQALDDSGLEVTEENAHRIGVAIGSGIGGLGLIEAGHQALV 123
Query: 121 EHCSTRRIGPFAVPKAMSSTASATLSTWFKIRGTSYSISSACATSAHCIGNAAELIQSGK 180
E R++ PF VP + + + LS +RG + +IS+AC T H IG+AA +I G
Sbjct: 124 EK-GPRKVSPFFVPSTIVNMIAGNLSIMRGLRGPNIAISTACTTGLHNIGHAARMIAYGD 182
Query: 181 QDIMFAGGQEDLDWTMS-NLFDAMGAMSSHFNHDPCSASRPYDSRRDGFVISGGAAVIVL 239
D M AGG E + F A A+S+ N +P ASRP+D RDGFV+ GA ++VL
Sbjct: 183 ADAMVAGGAEKASTPLGMAGFGAAKALSTR-NDEPQKASRPWDKDRDGFVLGDGAGMMVL 241
Query: 240 EEMERAKARGAKIYAELTGYGSTCDGDDMVSPS--GEGAIRCMRQALSSVE---EPVDYI 294
EE E AKARGAKIYAEL G+G + D M SPS G G M A+ E + Y+
Sbjct: 242 EEYEHAKARGAKIYAELVGFGMSGDAYHMTSPSEDGSGGALAMEAAMRDAGVTGEQIGYV 301
Query: 295 NTHGTATPKGDKKEVEAIREVF---KGNIPYIQSTKSLTGHSLGAAGAQEAIYCLIMMQE 351
N HGT+TP GD E++ I+ + STKS+TGH LGAAG+ EAI ++ + +
Sbjct: 302 NAHGTSTPAGDVAEIKGIKRALGEAGSKQVLVSSTKSMTGHLLGAAGSVEAIITVMSLVD 361
Query: 352 RFIGESKNIEEIDPE----FKGIPIVRKRIDNAKIDTVLSNSFGFGGTNATLVFRR 403
+ + + N++ DPE +P +++++ ++ + NSFGFGGTN +L+F++
Sbjct: 362 QIVPPTINLD--DPEEGLDIDLVPHTARKVES--MEYAICNSFGFGGTNGSLIFKK 413
>gnl|CDD|181166 PRK07910, PRK07910, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 418
Score = 207 bits (528), Expect = 5e-54
Identities = 129/414 (31%), Positives = 194/414 (46%), Gaps = 22/414 (5%)
Query: 4 VAVTGMGIVSSIGNNVSEVAISLREARSGI-TFSEDF-AKFGFRCQVWGKPLLNAAELID 61
V VTG+ + +++ + L + +SGI T + F +F ++ G L +
Sbjct: 14 VVVTGIAMTTALATDAETTWKLLLDGQSGIRTLDDPFVEEFDLPVRIGGHLLEEFDHQLT 73
Query: 62 RKAMRFLSQGGTWGHLAMQEAITDSRL-----QPCEITHERTGLIAGSGGPSTKCIVSAA 116
R +R +S +L + R+ P E+ R + G+G S + +V A
Sbjct: 74 RVELRRMS------YLQRMSTVLGRRVWENAGSP-EVDTNRLMVSIGTGLGSAEELVFAY 126
Query: 117 DLTREHCSTRRIGPFAVPKAMSSTASATLSTWFKIRGTSYSISSACATSAHCIGNAAELI 176
D R R + P AV M + +A + + + SACA+ + I A I
Sbjct: 127 DDMRAR-GLRAVSPLAVQMYMPNGPAAAVGLERHAKAGVITPVSACASGSEAIAQAWRQI 185
Query: 177 QSGKQDIMFAGGQED-LDWTMSNLFDAMGAMSSHFNHDPCSASRPYDSRRDGFVISGGAA 235
G+ DI GG E ++ F M + S N DP A RP+D RDGFV G A
Sbjct: 186 VLGEADIAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDKDRDGFVFGEGGA 245
Query: 236 VIVLEEMERAKARGAKIYAELTGYGSTCDGDDMVS--PSGEGAIRCMRQALSSV---EEP 290
++V+E E AKARGA I A + G T DG MV+ P+GE A M +A+
Sbjct: 246 LMVIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAMTRAIELAGLTPGD 305
Query: 291 VDYINTHGTATPKGDKKEVEAIREVFKGNIPYIQSTKSLTGHSLGAAGAQEAIYCLIMMQ 350
+D++N H T T GD E +AI G+ P + + KS GHS+GA GA E+I ++ ++
Sbjct: 306 IDHVNAHATGTSVGDVAEGKAINNALGGHRPAVYAPKSALGHSVGAVGAVESILTVLALR 365
Query: 351 ERFIGESKNIEEIDPEFKGIPIVRKRIDNAKIDTVLSNSFGFGGTNATLVFRRY 404
+ I + N+E +DPE + +V ++NSFGFGG N L F RY
Sbjct: 366 DGVIPPTLNLENLDPEID-LDVVAGEPRPGNYRYAINNSFGFGGHNVALAFGRY 418
>gnl|CDD|180594 PRK06501, PRK06501, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 425
Score = 202 bits (517), Expect = 1e-52
Identities = 141/435 (32%), Positives = 198/435 (45%), Gaps = 54/435 (12%)
Query: 4 VAVTGMGIVSSIGNNVSEVAISLREARSGITFSEDFAKFGFRCQVWGK------PLLNAA 57
VAVTGMG+V+S+G ++ +L SGI F G R ++ G A+
Sbjct: 13 VAVTGMGVVTSLGQGKADNWAALTAGESGIHTITRFPTEGLRTRIAGTVDFLPESPFGAS 72
Query: 58 ELIDRKAMRFLSQGGTWGHLAMQEAITDSRLQ-------------PCEIT-HERTGLIAG 103
L + A LA +EA+ + + P E+ R L A
Sbjct: 73 ALSEALA-----------RLAAEEALAQAGIGKGDFPGPLFLAAPPVELEWPARFALAAA 121
Query: 104 SGGPSTKCIVSAADLTREHCSTRRIGPFAVPKAMSSTASATLSTWFKIRGTSYSISSACA 163
G S L R R + + + L+ F RG S+S+ACA
Sbjct: 122 VGDND---APSYDRLLRA-ARGGRFDALH-ERFQFGSIADRLADRFGTRGLPISLSTACA 176
Query: 164 TSAHCIGNAAELIQSGKQDIMFAGGQEDLDWTMSNL--FDAMGAMSSHFNHDPCSASRPY 221
+ A I E I+ G+ D D + L F + A+S+ N P AS+P+
Sbjct: 177 SGATAIQLGVEAIRRGETDRALCIAT-DGSVSAEALIRFSLLSALSTQ-NDPPEKASKPF 234
Query: 222 DSRRDGFVISGGAAVIVLEEMERAKARGAKIYAELTGYGSTCDG--DDMVSPSGEGAIRC 279
RDGFV++ GA +VLE +E A ARGAKI + G G D SP G AI
Sbjct: 235 SKDRDGFVMAEGAGALVLESLESAVARGAKILGIVAGCGEKADSFHRTRSSPDGSPAIGA 294
Query: 280 MRQALSS---VEEPVDYINTHGTATPKGDKKEVEAIREVFK---GNIPYIQSTKSLTGHS 333
+R AL+ E +DYIN HGT+TP+ DK E + VF +IP + S KS+ GH+
Sbjct: 295 IRAALADAGLTPEQIDYINAHGTSTPENDKMEYLGLSAVFGERLASIP-VSSNKSMIGHT 353
Query: 334 LGAAGAQEAIYCLIMMQERFIGESKNIEEIDPEFKGIP--IVRKRIDNAKIDTVLSNSFG 391
L AAGA EA++ L+ +Q + + N + DP IP +V +A++ VLSNSFG
Sbjct: 354 LTAAGAVEAVFSLLTIQTGRLPPTINYDNPDPA---IPLDVVPNVARDARVTAVLSNSFG 410
Query: 392 FGGTNATLVFRRYKG 406
FGG NA+LV
Sbjct: 411 FGGQNASLVLTAEPA 425
>gnl|CDD|181683 PRK09185, PRK09185, 3-oxoacyl-(acyl carrier protein) synthase I;
Reviewed.
Length = 392
Score = 201 bits (513), Expect = 4e-52
Identities = 120/410 (29%), Positives = 178/410 (43%), Gaps = 27/410 (6%)
Query: 1 MRRVAVTGMGIVSSIGNNVSEVAISLREARSGITFSEDFAKFGFRCQVWGKPLLNAAELI 60
M V ++ G S++G + + +LR R+ DF V + L
Sbjct: 1 MTPVYISAFGATSALGRGLDAILAALRAGRASGMRPCDFWLVDLPTWVGEVVGVELPALP 60
Query: 61 DRKAMRFLSQGGTWGHLAMQEAITDSRLQPCEITHERTGLIAGSGGPSTKCIVSAADLTR 120
A F + LA+Q+ +R G++ G+ ST I+ R
Sbjct: 61 AALA-AFDCRNNRLALLALQQIEPAVEAAIARYGADRIGVVLGT---STSGILEGELAYR 116
Query: 121 EHCSTRRIGP--FAVPKAMSSTASATLSTWFKIRGTSYSISSACATSAHCIGNAAELIQS 178
P + + + + L + + G +Y+IS+AC++SA +A L+++
Sbjct: 117 RRDPAHGALPADYHYAQQELGSLADFLRAYLGLSGPAYTISTACSSSAKVFASARRLLEA 176
Query: 179 GKQDIMFAGGQEDLDWTMSNLFDAMGAMSSHFNHDPCSASRPYDSRRDGFVISGGAAVIV 238
G D GG + L N F+++ ++S PC RP+ + RDG I AA +
Sbjct: 177 GLCDAAIVGGVDSLCRLTLNGFNSLESLSPQ----PC---RPFSANRDGINIGEAAAFFL 229
Query: 239 LEEMERAKARGAKIYAELTGYGSTCDGDDMVSP--SGEGAIRCMRQALSSVE---EPVDY 293
LE + A L G G + D M +P G GAI M+QAL+ + Y
Sbjct: 230 LEREDDAAVA-------LLGVGESSDAHHMSAPHPEGLGAILAMQQALADAGLAPADIGY 282
Query: 294 INTHGTATPKGDKKEVEAIREVFKGNIPYIQSTKSLTGHSLGAAGAQEAIYCLIMMQERF 353
IN HGTATP D E A+ VF +P STK LTGH+LGAAGA EA C + ++
Sbjct: 283 INLHGTATPLNDAMESRAVAAVFGDGVP-CSSTKGLTGHTLGAAGAVEAAICWLALRHGL 341
Query: 354 IGESKNIEEIDPEFKGIPIVRKRIDNAKIDTVLSNSFGFGGTNATLVFRR 403
N + DP + +V I VLSNSF FGG N +L+F R
Sbjct: 342 PPHGWNTGQPDPALPPLYLVENA-QALAIRYVLSNSFAFGGNNCSLIFGR 390
>gnl|CDD|173154 PRK14691, PRK14691, 3-oxoacyl-(acyl carrier protein) synthase II;
Provisional.
Length = 342
Score = 199 bits (508), Expect = 8e-52
Identities = 120/317 (37%), Positives = 180/317 (56%), Gaps = 8/317 (2%)
Query: 95 HERTGLIAGSGGPSTKCIVSAADLTREHCSTRRIGPFAVPKAMSSTASATLSTWFKIRGT 154
ERT I G+G I A T + +R+ PF VP + + A+ +S +G
Sbjct: 25 QERTATIIGAGIGGFPAIAHAVR-TSDSRGPKRLSPFTVPSFLVNLAAGHVSIKHHFKGP 83
Query: 155 SYSISSACATSAHCIGNAAELIQSGKQDIMFAGGQEDLDWTMSNL-FDAMGAMSSHFNHD 213
+ +ACA IG+A +I++ + D+ GG E + T+S F A A+S+HFN
Sbjct: 84 IGAPVTACAAGVQAIGDAVRMIRNNEADVALCGGAEAVIDTVSLAGFAAARALSTHFNST 143
Query: 214 PCSASRPYDSRRDGFVISGGAAVIVLEEMERAKARGAKIYAELTGYGSTCDGDDMVSPS- 272
P ASRP+D+ RDGFV+ GA ++++EE+E A ARGAK AE+ GYG++ D M S +
Sbjct: 144 PEKASRPFDTARDGFVMGEGAGLLIIEELEHALARGAKPLAEIVGYGTSADAYHMTSGAE 203
Query: 273 -GEGAIRCMRQALSS---VEEPVDYINTHGTATPKGDKKEVEAIREVF-KGNIPYIQSTK 327
G+GA R M+ AL E V ++N H T+TP GD E+ AI+ +F + N I STK
Sbjct: 204 DGDGAYRAMKIALRQAGITPEQVQHLNAHATSTPVGDLGEINAIKHLFGESNALAITSTK 263
Query: 328 SLTGHSLGAAGAQEAIYCLIMMQERFIGESKNIEEIDPEFKGIPIVRKRIDNAKIDTVLS 387
S TGH LGAAG E I+ ++ ++++ + + N+E DP KG+ I+ + LS
Sbjct: 264 SATGHLLGAAGGLETIFTVLALRDQIVPATLNLENPDPAAKGLNIIAGNAQPHDMTYALS 323
Query: 388 NSFGFGGTNATLVFRRY 404
N FGF G NA+++ +R+
Sbjct: 324 NGFGFAGVNASILLKRW 340
>gnl|CDD|180324 PRK05952, PRK05952, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 381
Score = 175 bits (445), Expect = 2e-44
Identities = 121/419 (28%), Positives = 198/419 (47%), Gaps = 54/419 (12%)
Query: 1 MRRVAVTGMGIVSSIGNNVSEVAISLREARSGITFSEDFAKFGFRCQVWGKPL-LNAAEL 59
M +V VTG+G+VS++G+ + + L + +SGI + F + PL L +
Sbjct: 1 MMKVVVTGIGLVSALGD-LEQSWQRLLQGKSGIKLHQPFPELPPL------PLGLIGNQP 53
Query: 60 IDRKAMRFLSQGGTWGHLAMQEAITDSRLQPCEITHERTGLIAGSGGPSTKCIVSAADLT 119
+ L++ + A+ D+ L P G++ GS S C L
Sbjct: 54 SS---LEDLTK------TVVTAALKDAGLTPPL---TDCGVVIGS---SRGCQGQWEKLA 98
Query: 120 REHCSTRRIGPFAVPK--------AMSSTASATLSTWFKIRGTSYSISSACATSAHCIGN 171
R+ + ++ A+A +G + +ACAT I
Sbjct: 99 RQMYQGDDSPDEELDLENWLDTLPHQAAIAAARQ---IGTQGPVLAPMAACATGLWAIAQ 155
Query: 172 AAELIQSGKQDIMFAGGQED--LDWTMSNLFDAMGAMSSHFNHDPCSASRPYDSRRDGFV 229
ELIQ+G+ + AG E T++ F MGA++ + + P+D +R+G V
Sbjct: 156 GVELIQTGQCQRVIAGAVEAPITPLTLAG-FQQMGALAK-------TGAYPFDRQREGLV 207
Query: 230 ISGGAAVIVLEEMERAKARGAKIYAELTGYGSTCDGDDMVSPSGEG--AIRCMRQALSSV 287
+ G A++VLE E A+ RGAKIY ++ G+G TCD M +P +G AI ++Q L+
Sbjct: 208 LGEGGAILVLESAELAQKRGAKIYGQILGFGLTCDAYHMSAPEPDGKSAIAAIQQCLARS 267
Query: 288 E---EPVDYINTHGTATPKGDKKEVEAIREVFKGNIPYIQSTKSLTGHSLGAAGAQEAIY 344
E +DYI+ HGTAT D++E I+ +F + + STK TGH+LGA+GA +
Sbjct: 268 GLTPEDIDYIHAHGTATRLNDQREANLIQALFPHRVA-VSSTKGATGHTLGASGALGVAF 326
Query: 345 CLIMMQERFIGESKNIEEIDPEFKGIPIVRKRIDNAKIDTVLSNSFGFGGTNATLVFRR 403
L+ ++ + + ++E PEF + VR+ + + VL SFGFGG NA + +
Sbjct: 327 SLLALRHQQLPPCVGLQE--PEFD-LNFVRQA-QQSPLQNVLCLSFGFGGQNAAIALGK 381
>gnl|CDD|129058 smart00825, PKS_KS, Beta-ketoacyl synthase. The structure of
beta-ketoacyl synthase is similar to that of the
thiolase family and also chalcone synthase. The active
site of beta-ketoacyl synthase is located between the N
and C-terminal domains.
Length = 424
Score = 130 bits (331), Expect = 4e-31
Identities = 95/341 (27%), Positives = 148/341 (43%), Gaps = 38/341 (11%)
Query: 81 EAITDSRLQPCEITHERTGLIAGSGGPSTKCIVSAAD-LTREHCSTRRIGPFAVPKAMSS 139
EA+ D+ + P + RTG+ G ++D I +A S
Sbjct: 97 EALEDAGIDPESLRGSRTGVFVG---------AMSSDYAELLARDPEDIEGYAATGTARS 147
Query: 140 TASATLSTWFKIRGTSYSISSACATSAHCIGNAAELIQSGKQDIMFAGG-QEDLDWTMSN 198
+ +S +F +RG S ++ +AC++S + A + ++SG+ D+ AGG L
Sbjct: 148 FIANRISYFFDLRGPSVTVDTACSSSLVALHLACQSLRSGECDMALAGGVNLILSPDTFV 207
Query: 199 LFDAMGAMSSHFNHDPCSASRPYDSRRDGFVISGGAAVIVLEEMERAKARGAKIYAELTG 258
F G +S + +D+ DG+V G V+VL+ + A G I A + G
Sbjct: 208 GFSRAGMLSPD------GRCKTFDADADGYVRGEGVGVVVLKRLSDALRDGDPILAVIRG 261
Query: 259 YGSTCDGDD--MVSPSGEGAIRCMRQALSSVE-EP--VDYINTHGTATPKGDKKEVEAIR 313
DG + +PSG R +RQAL+ +P VDY+ HGT TP GD E EA+
Sbjct: 262 SAVNQDGRSNGLTAPSGPAQARLIRQALARAGVDPADVDYVEAHGTGTPLGDPIEAEALA 321
Query: 314 EVFKGNIP-----YIQSTKSLTGHSLGAAGAQEA--IYCLIMMQERFIGESKNIEE---- 362
VF P + S KS GH AAG A I ++ ++ I + + E
Sbjct: 322 AVFGQGRPRDGPLLLGSVKSNIGHLEAAAGV--AGLIKVVLALRHGTIPPTLHFETPNPH 379
Query: 363 IDPEFKGIPIVRKRID---NAKIDTVLSNSFGFGGTNATLV 400
ID E + + + + +SFGFGGTNA ++
Sbjct: 380 IDLEESPLRVPTEATPWPATGRPRRAGVSSFGFGGTNAHVI 420
>gnl|CDD|163029 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid
synthase PfaA. Members of the seed for this alignment
are involved in omega-3 polyunsaturated fatty acid
biosynthesis, such as the protein PfaA from the
eicosapentaenoic acid biosynthesis operon in
Photobacterium profundum strain SS9. PfaA is encoded
together with PfaB, PfaC, and PfaD, and the functions of
the individual polypeptides have not yet been described.
More distant homologs of PfaA, also included with the
reach of this model, appear to be involved in
polyketide-like biosynthetic mechanisms of
polyunsaturated fatty acid biosynthesis, an alternative
to the more familiar iterated mechanism of chain
extension and desaturation, and in most cases are
encoded near genes for homologs of PfaB, PfaC, and/or
PfaD.
Length = 2582
Score = 82.7 bits (204), Expect = 2e-16
Identities = 75/293 (25%), Positives = 126/293 (43%), Gaps = 28/293 (9%)
Query: 134 PKAMSSTASATLSTWFKIRGTSYSISSACATSAHCIGNAAELIQSGKQDIMFAGGQ-EDL 192
P ++ + S ++ F + G + + +ACA S I A + G+ ++M GG D
Sbjct: 178 PGSLGNVISGRIANRFDLGGMNCVVDAACAGSLAAIRMALSELLEGRSEMMITGGVCTDN 237
Query: 193 DWTMSNLFDAMGAMSSHFNHDPCSASRPYDSRRDGFVISGGAAVIVLEEMERAKARGAKI 252
M F A ++ N D +P+D G +I G ++ L+ +E A+ G +I
Sbjct: 238 SPFMYMSFSKTPAFTT--NED----IQPFDIDSKGMMIGEGIGMMALKRLEDAERDGDRI 291
Query: 253 YAELTGYGSTCDG--DDMVSPSGEGAIRCMRQALSSV---EEPVDYINTHGTATPKGDKK 307
YA + G G++ DG + +P EG + +++A I HGT T GD
Sbjct: 292 YAVIKGVGASSDGKFKSIYAPRPEGQAKALKRAYDDAGFAPHTCGLIEAHGTGTAAGDVA 351
Query: 308 EVEAIREVFKGNIPYIQ-----STKSLTGHSLGAAGAQEAIYCLIMMQERFIGESKNIEE 362
E + VF + Q S KS GH+ AG I ++ + + + + N+++
Sbjct: 352 EFGGLVSVFSQDNDQKQHIALGSVKSQIGHTKSTAGTAGMIKAVLALHHKVLPPTINVDQ 411
Query: 363 IDP--EFKGIPIV--------RKRIDNAKIDTVLSNSFGFGGTNATLVFRRYK 405
+P + + P +R D +S SFGFGGTN +V Y
Sbjct: 412 PNPKLDIENSPFYLNTETRPWMQREDGTPRRAGIS-SFGFGGTNFHMVLEEYS 463
>gnl|CDD|180600 PRK06519, PRK06519, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 398
Score = 46.9 bits (112), Expect = 1e-05
Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 14/103 (13%)
Query: 161 ACATSAHCIGNAAELIQSGKQDIMFAGG-----QEDLDWTMSNLFDAMGAMSSHFNHDPC 215
+ SA I A I SG+ D GG + D+ L +G + P
Sbjct: 176 SAGVSA--IEIAFARIASGQSDHALVGGAYNAERPDM-----LLLYELGGLLLKGGWAPV 228
Query: 216 SASRPYDSRRDGFVISGGAAVIVLEEMERAKARGAKIYAELTG 258
+ D GF++ G A +VLE E A+ARGA+ YA ++G
Sbjct: 229 WSRGGED--GGGFILGSGGAFLVLESREHAEARGARPYARISG 269
>gnl|CDD|181597 PRK08963, fadI, 3-ketoacyl-CoA thiolase; Reviewed.
Length = 428
Score = 40.7 bits (96), Expect = 7e-04
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 156 YSISSACATSAHCIGNAAELIQSGKQDIMFAGGQE 190
YS+S ACATS + N AE I +G DI AGG +
Sbjct: 85 YSVSRACATSFQAVANVAESIMAGTIDIGIAGGAD 119
>gnl|CDD|131499 TIGR02446, FadI, fatty oxidation complex, beta subunit FadI. This
subunit of the FadJI complex has acetyl-CoA
C-acyltransferase (EC 2.3.1.16) activity, and is also
known as beta-ketothiolase and fatty oxidation complex,
beta subunit, and YfcY. This protein is almost always
located adjacent to FadJ (TIGR02440). The FadJI complex
is needed for anaerobic beta-oxidation of short-chain
fatty acids in E. coli.
Length = 430
Score = 38.8 bits (90), Expect = 0.003
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 133 VPKAMSSTASATLSTWFKIRGTSYSISSACATSAHCIGNAAELIQSGKQDIMFAGGQE 190
+P+A + L T + +YS++ ACATS N AE I +G DI AGG +
Sbjct: 64 MPEAPNIAREIVLGTGMNVHTDAYSVTRACATSFQSAVNVAESIMAGAIDIGIAGGAD 121
>gnl|CDD|162610 TIGR01930, AcCoA-C-Actrans, acetyl-CoA acetyltransferases. This
model represents a large family of enzymes which
catalyze the thiolysis of a linear fatty acid CoA (or
acetoacetyl-CoA) using a second CoA molecule to produce
acetyl-CoA and a CoA-ester product two carbons shorter
(or, alternatively, the condensation of two molecules of
acetyl-CoA to produce acetoacetyl-CoA and CoA). This
enzyme is also known as "thiolase", "3-ketoacyl-CoA
thiolase", "beta-ketothiolase" and "Fatty oxidation
complex beta subunit". When catalyzing the degradative
reaction on fatty acids the corresponding EC number is
2.3.1.16. The condensation reaction corresponds to
2.3.1.9. Note that the enzymes which catalyze the
condensation are generally not involved in fatty acid
biosynthesis, which is carried out by a decarboxylating
condensation of acetyl and malonyl esters of acyl
carrier proteins. Rather, this activity may produce
acetoacetyl-CoA for pathways such as IPP biosynthesis in
the absence of sufficient fatty acid oxidation.
Length = 386
Score = 35.3 bits (82), Expect = 0.029
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 156 YSISSACATSAHCIGNAAELIQSGKQDIMFAGGQEDLDWTMSN 198
Y+++ CA+ + AA+LI++G+ D++ AGG E +MS
Sbjct: 77 YTVNRQCASGLQAVILAAQLIRAGEADVVVAGGVE----SMSR 115
Score = 27.2 bits (61), Expect = 7.2
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 230 ISGGAAVIVLEEMERAKARGAKIYAELTGYGST-CDGDDM 268
++ GAA ++L ERAK G A + + D + M
Sbjct: 245 LNDGAAALLLMSEERAKELGLTPLARIVSFAVAGVDPEIM 284
>gnl|CDD|180261 PRK05790, PRK05790, putative acyltransferase; Provisional.
Length = 393
Score = 35.1 bits (82), Expect = 0.029
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 12/69 (17%)
Query: 224 RRDGFV-------ISGGAAVIVLEEMERAKARGAKIYAELTGYGST-CDGDDMVSPSGEG 275
+DG V I+ GAA +V+ +AK G A + Y D M G G
Sbjct: 237 DKDGTVTAGNASGINDGAAAVVVMSEAKAKELGLTPLARIVSYAVAGVDPAIM----GIG 292
Query: 276 AIRCMRQAL 284
+ +R+AL
Sbjct: 293 PVPAIRKAL 301
Score = 31.3 bits (72), Expect = 0.46
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 154 TSYSISSACATSAHCIGNAAELIQSGKQDIMFAGGQEDLDWTMSN 198
+ +I+ C + + AA+ I++G DI+ AGGQE +MS
Sbjct: 80 PALTINKVCGSGLKAVALAAQAIRAGDADIVVAGGQE----SMSQ 120
>gnl|CDD|183998 PRK13359, PRK13359, beta-ketoadipyl CoA thiolase; Provisional.
Length = 400
Score = 34.8 bits (80), Expect = 0.047
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 157 SISSACATSAHCIGNAAELIQSGKQDIMFAGGQEDLDWTMSNLFDAMGAMSSHF 210
+I+ C + +G AA I+SG+ +M AGG E +MS MG S F
Sbjct: 85 TINRLCGSGMDAVGVAARAIKSGEAALMIAGGVE----SMSRAPFVMGKAESAF 134
>gnl|CDD|168632 PRK06633, PRK06633, acetyl-CoA acetyltransferase; Provisional.
Length = 392
Score = 33.5 bits (76), Expect = 0.091
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 156 YSISSACATSAHCIGNAAELIQSGKQDIMFAGGQEDLDWTMSNLFDAMGA 205
Y+I+ C + + AA I +G +I+ AGGQE++ M + GA
Sbjct: 83 YTINKVCGSGLKSVALAANSIMTGDNEIVIAGGQENMSLGMHGSYIRAGA 132
>gnl|CDD|181625 PRK09051, PRK09051, beta-ketothiolase; Provisional.
Length = 394
Score = 33.4 bits (77), Expect = 0.12
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 230 ISGGAAVIVLEEMERAKARGAKIYAELTGYG-STCDGDDMVSPSGEGAIRCMRQAL 284
I+ GAA +VL E + A+ARG K A L GY + D + M G G + ++AL
Sbjct: 251 INDGAAAVVLAEADAAEARGLKPLARLVGYAHAGVDPEYM----GIGPVPATQKAL 302
>gnl|CDD|178250 PLN02644, PLN02644, acetyl-CoA C-acetyltransferase.
Length = 394
Score = 31.6 bits (72), Expect = 0.38
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 210 FNHDPCSASRPYDSRRDGFV-------ISGGAAVIVLEEMERAKARGAKIYAELTGYG 260
F+ RP G V IS GAA +VL E+A G ++ A++ GY
Sbjct: 223 FDPAKLRKLRPSFKEDGGSVTAGNASSISDGAAALVLVSGEKALELGLQVIAKIRGYA 280
Score = 27.4 bits (61), Expect = 6.5
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 157 SISSACATSAHCIGNAAELIQSGKQDIMFAGGQEDLDWTMSN 198
+++ CA+ + AA+ IQ G D++ AGG E +MSN
Sbjct: 82 TVNKVCASGMKAVMLAAQSIQLGINDVVVAGGME----SMSN 119
>gnl|CDD|102340 PRK06366, PRK06366, acetyl-CoA acetyltransferase; Provisional.
Length = 388
Score = 31.5 bits (71), Expect = 0.45
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 154 TSYSISSACATSAHCIGNAAELIQSGKQDIMFAGGQEDL 192
T Y+++ CA+ + +AA I G++D++ AGG E++
Sbjct: 80 TKYTVNVVCASGMLAVESAAREIMLGERDLVIAGGMENM 118
>gnl|CDD|179974 PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.
Length = 384
Score = 31.2 bits (72), Expect = 0.46
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 287 VEEPVD-YINTHGTATPKGDKKEVEAIREVF 316
V EPV Y++T GT D+K EA+REVF
Sbjct: 304 VAEPVSIYVDTFGTGK-VSDEKIEEAVREVF 333
>gnl|CDD|131483 TIGR02430, pcaF, beta-ketoadipyl CoA thiolase. Members of this
family are designated beta-ketoadipyl CoA thiolase, an
enzyme that acts at the end of pathways for the
degradation of protocatechuate (from benzoate and
related compounds) and of phenylacetic acid.
Length = 400
Score = 30.9 bits (70), Expect = 0.56
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 162 CATSAHCIGNAAELIQSGKQDIMFAGGQEDLDWTMSNLFDAMGAMSSHF 210
C + IG AA I++G+ D++ AGG E +MS MG S F
Sbjct: 89 CGSGLDAIGMAARAIKAGEADLLIAGGVE----SMSRAPFVMGKADSAF 133
>gnl|CDD|184033 PRK13404, PRK13404, dihydropyrimidinase; Provisional.
Length = 477
Score = 30.8 bits (70), Expect = 0.63
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 16/57 (28%)
Query: 230 ISGGAAVIVLEEMERAKARGAKIYAELTGYGSTC------DGDDMVSPSGEGAIRCM 280
+SG A E++ RA+ RG KI+AE TC +D+ P EGA + +
Sbjct: 242 VSGREAA---EQIRRARGRGLKIFAE------TCPQYLFLTAEDLDRPGMEGA-KYI 288
>gnl|CDD|181624 PRK09050, PRK09050, beta-ketoadipyl CoA thiolase; Validated.
Length = 401
Score = 29.5 bits (67), Expect = 1.7
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 162 CATSAHCIGNAAELIQSGKQDIMFAGGQEDLDWTMSNLFDAMGAMSSHF 210
C + +G AA I++G+ ++M AGG E +MS MG S F
Sbjct: 90 CGSGMDAVGTAARAIKAGEAELMIAGGVE----SMSRAPFVMGKADSAF 134
>gnl|CDD|181311 PRK08235, PRK08235, acetyl-CoA acetyltransferase; Provisional.
Length = 393
Score = 29.3 bits (66), Expect = 2.1
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 155 SYSISSACATSAHCIGNAAELIQSGKQDIMFAGGQEDLDWTMSN 198
+ +++ CA+ + A ++I++G ++ AGG E +MSN
Sbjct: 81 TETVNKVCASGLRAVTLADQIIRAGDASVIVAGGME----SMSN 120
>gnl|CDD|180563 PRK06445, PRK06445, acetyl-CoA acetyltransferase; Provisional.
Length = 394
Score = 29.3 bits (66), Expect = 2.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 157 SISSACATSAHCIGNAAELIQSGKQDIMFAGGQE 190
++ CA+S + A I +G DI+ AGG E
Sbjct: 90 AVDRQCASSLTTVSIGAMEIATGMADIVIAGGVE 123
>gnl|CDD|181315 PRK08242, PRK08242, acetyl-CoA acetyltransferase; Validated.
Length = 402
Score = 28.7 bits (65), Expect = 2.6
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 156 YSISSACATSAHCIGNAAELIQSGKQDIMFAGGQEDLDWTMSNLFDAMGAMSSHFNHDPC 215
I+ CA+ + AA ++SG D++ AGG E +MS + MG+ + DP
Sbjct: 85 VQINRFCASGLEAVNLAAAKVRSGWDDLVIAGGVE----SMSRV--PMGSDGGAWAMDPS 138
Query: 216 SASRPY 221
+ Y
Sbjct: 139 TNFPTY 144
>gnl|CDD|182884 PRK10987, PRK10987, regulatory protein AmpE; Provisional.
Length = 284
Score = 28.7 bits (65), Expect = 2.7
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 5/38 (13%)
Query: 174 ELIQSGKQDIMFAGGQEDLDWTMSNLFDAMGAMSSHFN 211
QSG ++ LDW L A+ HF
Sbjct: 183 PRAQSGIDALLHV-----LDWLPVRLAGFGYALLGHFE 215
>gnl|CDD|178399 PLN02802, PLN02802, triacylglycerol lipase.
Length = 509
Score = 28.6 bits (64), Expect = 2.7
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 308 EVEAIREVFKGNIPYIQSTKSLTGHSLGAAGA 339
EV + E +KG I ++TGHSLGAA A
Sbjct: 317 EVRRLMEKYKGEELSI----TVTGHSLGAALA 344
>gnl|CDD|180309 PRK05899, PRK05899, transketolase; Reviewed.
Length = 624
Score = 28.6 bits (65), Expect = 2.8
Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 10/39 (25%)
Query: 202 AMGAM-------SSHFNHDPCSASRPYDSRRDGFVISGG 233
MGA + HDP P RD FV+S G
Sbjct: 34 PMGAADIAYVLWTRFLRHDP---KNPKWPNRDRFVLSAG 69
>gnl|CDD|180595 PRK06504, PRK06504, acetyl-CoA acetyltransferase; Provisional.
Length = 390
Score = 28.5 bits (64), Expect = 3.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 157 SISSACATSAHCIGNAAELIQSGKQDIMFAGGQE 190
SI C +S + AA+ + SG DI+ A G E
Sbjct: 84 SIDRQCGSSQQALHFAAQAVMSGTMDIVIAAGVE 117
>gnl|CDD|184454 PRK14016, PRK14016, cyanophycin synthetase; Provisional.
Length = 727
Score = 28.2 bits (64), Expect = 3.7
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 106 GPSTKCIVSAAD 117
GPST IV AA+
Sbjct: 159 GPSTAAIVDAAE 170
>gnl|CDD|181388 PRK08323, PRK08323, phenylhydantoinase; Validated.
Length = 459
Score = 28.2 bits (64), Expect = 3.7
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 16/58 (27%)
Query: 230 ISGGAAVIVLEEMERAKARGAKIYAELTGYGSTC------DGDDMVSPSG-EGAIRCM 280
+S A+ E + RA+ARG +++ E TC D + P EGA M
Sbjct: 236 VSCKEAL---EAIRRARARGQRVFGE------TCPQYLLLDESEYDGPDWFEGAKYVM 284
>gnl|CDD|183295 PRK11747, dinG, ATP-dependent DNA helicase DinG; Provisional.
Length = 697
Score = 27.9 bits (63), Expect = 4.8
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Query: 130 PFAVPKAMSSTASATLSTWFKIRG 153
PFAVP S ATL+ W K RG
Sbjct: 615 PFAVP---DSPVEATLAEWLKSRG 635
>gnl|CDD|181123 PRK07801, PRK07801, acetyl-CoA acetyltransferase; Provisional.
Length = 382
Score = 27.7 bits (62), Expect = 4.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 162 CATSAHCIGNAAELIQSGKQDIMFAGGQEDLDW 194
C +S I AA+ + SG QD++ AGG +++
Sbjct: 89 CGSSQQAIHFAAQAVMSGTQDLVVAGGVQNMSQ 121
>gnl|CDD|181626 PRK09052, PRK09052, acetyl-CoA acetyltransferase; Provisional.
Length = 399
Score = 27.7 bits (62), Expect = 5.1
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
Query: 162 CATSAHCIGNAAELIQSGKQDIMFAGGQEDLDWTMSNLFDAMG---AMSSH-FNHD 213
CA+ + AA+ I+ G+ D+M A G E +MS + MG +MS F D
Sbjct: 95 CASGLQAVAMAADRIRVGEADVMIAAGVE----SMS-MVPMMGNKPSMSPAIFARD 145
>gnl|CDD|168156 PRK05656, PRK05656, acetyl-CoA acetyltransferase; Provisional.
Length = 393
Score = 27.9 bits (62), Expect = 5.2
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 224 RRDGFVISG-------GAAVIVLEEMERAKARGAKIYAELTGYGS 261
++DG V +G GAA ++L +AKA G + A++ Y +
Sbjct: 237 KKDGSVTAGNASSLNDGAAAVLLMSAAKAKALGLPVLAKIAAYAN 281
>gnl|CDD|180468 PRK06205, PRK06205, acetyl-CoA acetyltransferase; Provisional.
Length = 404
Score = 27.6 bits (62), Expect = 6.2
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 162 CATSAHCIGNAAELIQSGKQDIMFAGGQEDLDWTMSN 198
C + + AA +Q+G D++ AGG E +MSN
Sbjct: 88 CGSGLQAVITAAMQVQTGAADVVIAGGAE----SMSN 120
>gnl|CDD|184047 PRK13426, PRK13426, F0F1 ATP synthase subunit gamma; Provisional.
Length = 291
Score = 27.4 bits (61), Expect = 7.3
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 311 AIREVFKGNIPYIQSTKSLTGHSLGAAG-----AQEAIYCLIMMQERFIGESKNIEEIDP 365
+++E+ K I +QST+ +T A AQ AI ++ Q + N D
Sbjct: 3 SLKEI-KTRIASVQSTRKITSAMKMVASAKLHKAQGAIENMLPYQRKLNHILTNFLSADL 61
Query: 366 EFKGIPIVRKRIDNAKIDTVLSNSFGFGGTNATLV 400
+ + V + + I SN+ GG NA ++
Sbjct: 62 DVESPFTVERPVKRVAIVVFSSNTSLCGGFNANII 96
>gnl|CDD|181265 PRK08170, PRK08170, acetyl-CoA acetyltransferase; Provisional.
Length = 426
Score = 27.3 bits (61), Expect = 8.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 162 CATSAHCIGNAAELIQSGKQDIMFAGGQEDL 192
CA+ + +AA I G+ D++ AGG E +
Sbjct: 89 CASGMQALDSAAANIALGRADLVLAGGVEAM 119
>gnl|CDD|178604 PLN03037, PLN03037, lipase class 3 family protein; Provisional.
Length = 525
Score = 27.2 bits (60), Expect = 8.4
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 307 KEVEAIREVFKGNIPYIQSTKSLTGHSLGAAGA 339
+EV+ + FK + T +TGHSLG A A
Sbjct: 302 EEVKRLVNFFKDRGEEVSLT--ITGHSLGGALA 332
>gnl|CDD|182288 PRK10178, PRK10178, D-alanyl-D-alanine dipeptidase; Provisional.
Length = 184
Score = 26.9 bits (60), Expect = 8.8
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 9/46 (19%)
Query: 165 SAHCIGNAAELIQSGKQDIMFAGGQEDLDWTMSNLFDAMGAMSSHF 210
S H G A +L ++ A G LD M FD M A S HF
Sbjct: 96 SNHSRGTAIDL------TLVDAHGNI-LD--MGTGFDEMHARSHHF 132
>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional.
Length = 182
Score = 27.1 bits (60), Expect = 9.3
Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 19/71 (26%)
Query: 133 VPKAMSSTASATLSTWFKIRGTSYSISSACATSAHCIGNAAELIQSGKQDIMFAGGQEDL 192
+P AMS+T +R ++ I CAT+A G E L
Sbjct: 130 LPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQ-------------------GLYEGL 170
Query: 193 DWTMSNLFDAM 203
DW +N+ +M
Sbjct: 171 DWLSANIKKSM 181
>gnl|CDD|177579 PHA03294, PHA03294, envelope glycoprotein H; Provisional.
Length = 835
Score = 27.0 bits (60), Expect = 10.0
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 269 VSPSGEGAIRCMRQALSSVEEPVDY 293
+ S + MR+ + EE +DY
Sbjct: 314 NNASDGSMYKAMREVAAYPEESLDY 338
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.318 0.132 0.389
Gapped
Lambda K H
0.267 0.0841 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,567,135
Number of extensions: 419760
Number of successful extensions: 1041
Number of sequences better than 10.0: 1
Number of HSP's gapped: 940
Number of HSP's successfully gapped: 70
Length of query: 406
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 310
Effective length of database: 3,920,105
Effective search space: 1215232550
Effective search space used: 1215232550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (25.9 bits)