BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780461|ref|YP_003064874.1| 3-oxoacyl-(acyl carrier
protein) synthase I [Candidatus Liberibacter asiaticus str. psy62]
(406 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780461|ref|YP_003064874.1| 3-oxoacyl-(acyl carrier protein) synthase I [Candidatus
Liberibacter asiaticus str. psy62]
Length = 406
Score = 840 bits (2170), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/406 (100%), Positives = 406/406 (100%)
Query: 1 MRRVAVTGMGIVSSIGNNVSEVAISLREARSGITFSEDFAKFGFRCQVWGKPLLNAAELI 60
MRRVAVTGMGIVSSIGNNVSEVAISLREARSGITFSEDFAKFGFRCQVWGKPLLNAAELI
Sbjct: 1 MRRVAVTGMGIVSSIGNNVSEVAISLREARSGITFSEDFAKFGFRCQVWGKPLLNAAELI 60
Query: 61 DRKAMRFLSQGGTWGHLAMQEAITDSRLQPCEITHERTGLIAGSGGPSTKCIVSAADLTR 120
DRKAMRFLSQGGTWGHLAMQEAITDSRLQPCEITHERTGLIAGSGGPSTKCIVSAADLTR
Sbjct: 61 DRKAMRFLSQGGTWGHLAMQEAITDSRLQPCEITHERTGLIAGSGGPSTKCIVSAADLTR 120
Query: 121 EHCSTRRIGPFAVPKAMSSTASATLSTWFKIRGTSYSISSACATSAHCIGNAAELIQSGK 180
EHCSTRRIGPFAVPKAMSSTASATLSTWFKIRGTSYSISSACATSAHCIGNAAELIQSGK
Sbjct: 121 EHCSTRRIGPFAVPKAMSSTASATLSTWFKIRGTSYSISSACATSAHCIGNAAELIQSGK 180
Query: 181 QDIMFAGGQEDLDWTMSNLFDAMGAMSSHFNHDPCSASRPYDSRRDGFVISGGAAVIVLE 240
QDIMFAGGQEDLDWTMSNLFDAMGAMSSHFNHDPCSASRPYDSRRDGFVISGGAAVIVLE
Sbjct: 181 QDIMFAGGQEDLDWTMSNLFDAMGAMSSHFNHDPCSASRPYDSRRDGFVISGGAAVIVLE 240
Query: 241 EMERAKARGAKIYAELTGYGSTCDGDDMVSPSGEGAIRCMRQALSSVEEPVDYINTHGTA 300
EMERAKARGAKIYAELTGYGSTCDGDDMVSPSGEGAIRCMRQALSSVEEPVDYINTHGTA
Sbjct: 241 EMERAKARGAKIYAELTGYGSTCDGDDMVSPSGEGAIRCMRQALSSVEEPVDYINTHGTA 300
Query: 301 TPKGDKKEVEAIREVFKGNIPYIQSTKSLTGHSLGAAGAQEAIYCLIMMQERFIGESKNI 360
TPKGDKKEVEAIREVFKGNIPYIQSTKSLTGHSLGAAGAQEAIYCLIMMQERFIGESKNI
Sbjct: 301 TPKGDKKEVEAIREVFKGNIPYIQSTKSLTGHSLGAAGAQEAIYCLIMMQERFIGESKNI 360
Query: 361 EEIDPEFKGIPIVRKRIDNAKIDTVLSNSFGFGGTNATLVFRRYKG 406
EEIDPEFKGIPIVRKRIDNAKIDTVLSNSFGFGGTNATLVFRRYKG
Sbjct: 361 EEIDPEFKGIPIVRKRIDNAKIDTVLSNSFGFGGTNATLVFRRYKG 406
>gi|254780533|ref|YP_003064946.1| 3-oxoacyl-(acyl carrier protein) synthase II [Candidatus
Liberibacter asiaticus str. psy62]
Length = 423
Score = 233 bits (593), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 154/424 (36%), Positives = 234/424 (55%), Gaps = 23/424 (5%)
Query: 1 MRRVAVTGMGIVSSIGNNVSEVAISLREARSGIT-FSEDFAKFGFRCQVWGK-PL----- 53
MRRV VTG+G+++ +G V L GI + F G ++ G P+
Sbjct: 1 MRRVVVTGLGMITPLGCGVDVSWSRLIAGEVGIRHLDQKFDLEGLSSKIAGLIPVGNGSD 60
Query: 54 --LNAAELIDRKAMRFLSQGGTWGHLAMQEAITDSRLQP-CEITHERTGLIAGSGGPSTK 110
N + I +R + Q +G +A A+ DS P + TG++ GSG
Sbjct: 61 GTFNYEDWILSSDLRKIDQFILYGMVASDMALADSGWAPKTDKDRNSTGVVFGSGMGGLN 120
Query: 111 CIVSAADLTREHCSTRRIGPFAVPKAMSSTASATLSTWFKIRGTSYSISSACATSAHCIG 170
IV ++++ R+ R+I PF VP ++ S S +S ++RG ++++++AC++ AH IG
Sbjct: 121 RIVESSNVLRDG-GPRKISPFTVPGSIISLLSGNISIRNQLRGPNHAVTTACSSGAHAIG 179
Query: 171 NAAELIQSGKQDIMFAGGQEDLDWTMSNL-FDAMGAMSSHFNHDPCSASRPYDSRRDGFV 229
+A+ LI G D+M AGG E + F A A+S+ FN DP ASRP+D RDGFV
Sbjct: 180 DASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTRASRPFDQDRDGFV 239
Query: 230 ISGGAAVIVLEEMERAKARGAKIYAELTGYGSTCDGDDMVSP--SGEGAIRCMRQALSS- 286
+ GA +VLE++E AKARGAKIY+E+ GYG + D + P G GA RCM A++
Sbjct: 240 MGEGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGNGAYRCMSSAIARA 299
Query: 287 --VEEPVDYINTHGTATPKGDKKEVEAIREVFKGNIPYI--QSTKSLTGHSLGAAGAQEA 342
+ +DYIN HGT+T D E+ A+ + + ++ STKS GH LGAAGA EA
Sbjct: 300 KLLPSDIDYINAHGTST-IADTIELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGAVEA 358
Query: 343 IYCLIMMQERFIGESKNIEEIDPEFKG-IPIVRKRIDNAKIDTVLSNSFGFGGTNATLVF 401
C + +++ + + N++ +P K I +V R ++ +SNSFGFGGTN +LVF
Sbjct: 359 AICNLAIRDGIVPATLNLD--NPAKKTFIDLVPHRAIKKNVNVAMSNSFGFGGTNVSLVF 416
Query: 402 RRYK 405
R+++
Sbjct: 417 RKFQ 420
>gi|254780127|ref|YP_003064540.1| putative DNA polymerase from bacteriophage origin [Candidatus
Liberibacter asiaticus str. psy62]
Length = 675
Score = 29.6 bits (65), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 306 KKEVEAIREVFKGNIPYIQSTKS--LTGHSLGAAGAQEAIYCLIMMQERFIGESKNIEE 362
K++VEA RE+FK IP + L ++ G + + ++ +QE E K ++E
Sbjct: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222
>gi|254780450|ref|YP_003064863.1| two-component sensor histidine kinase/response regulator hybrid
protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 803
Score = 28.5 bits (62), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 208 SHFNHDPCSASRPYDSRRDGFVISGGAAVIVLEEMERAKARGAKIYAELTGY 259
SH++HD A P + D ++G +A+++L E E + RG+K E GY
Sbjct: 660 SHYSHD--IAIIPQEEPAD---LTGNSAIVLLVEDEDSVRRGSKRMLETRGY 706
>gi|254780666|ref|YP_003065079.1| Fmu (Sun) domain protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 445
Score = 23.5 bits (49), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 100 LIAGSGGPSTKCIVSAADLTREHCSTRRI 128
L A GG + + IVS A +T S RR+
Sbjct: 248 LCAAPGGKTAQLIVSGAKVTALDVSKRRL 276
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.318 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 241,066
Number of Sequences: 1233
Number of extensions: 9501
Number of successful extensions: 30
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 8
length of query: 406
length of database: 328,796
effective HSP length: 76
effective length of query: 330
effective length of database: 235,088
effective search space: 77579040
effective search space used: 77579040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 39 (19.6 bits)