HHsearch alignment for GI: 254780462 and conserved domain: COG1091
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane].
Probab=99.01 E-value=1.3e-08 Score=72.17 Aligned_cols=178 Identities=16% Similarity=0.209 Sum_probs=120.8
Q ss_pred EEEECCCCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 99938898852589999999989988999948978999999998515964999877999999999999999983798899
Q gi|254780462|r 10 GLIMGVANDHSIAWGIAKVLHSAGAQLAFSYQGESIGKRLKPLALTVDSDFMIPCNVEDPSSMDLLFERIKERWETLDFV 89 (267)
Q Consensus 10 ~lItGas~~~GIG~aia~~l~~~Ga~V~i~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~l 89 (267)
T Consensus 3 iLi~G~~Gq--LG~~L~~~l~-~~~~v~a~~~~~--------------------~Ditd~~~v~~~i~~~-----~PDvV 54 (281)
T COG1091 3 ILITGANGQ--LGTELRRALP-GEFEVIATDRAE--------------------LDITDPDAVLEVIRET-----RPDVV 54 (281)
T ss_pred EEEECCCCH--HHHHHHHHHC-CCCEEEECCCCC--------------------CCCCCHHHHHHHHHHH-----CCCEE
T ss_conf 899769876--7999999717-784399515765--------------------5556858999999861-----99989
Q ss_pred EECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCC-----------CCCC
Q ss_conf 93683317765557612579999977650166112322210022244684168988752014564-----------3210
Q gi|254780462|r 90 VHSIAFSDKNELRGPYYNTSRDNFIQTMLVSCFSFTEIVRRAAQLMPHGGAMITLTYGGSMRVVP-----------NYNA 158 (267)
Q Consensus 90 VnnAg~~~~~~~~~~~~~~~~e~~~~~~~vn~~~~~~~~~~~~~~~~~~G~II~isS~~~~~~~~-----------~~~~ 158 (267)
T Consensus 55 In~AAyt~vD--------~aE~~~e~A~~vNa~~~~~lA~aa~~---~ga~lVhiSTDyVFDG~~~~~Y~E~D~~~P~nv 123 (281)
T COG1091 55 INAAAYTAVD--------KAESEPELAFAVNATGAENLARAAAE---VGARLVHISTDYVFDGEKGGPYKETDTPNPLNV 123 (281)
T ss_pred EECCCCCCCC--------CCCCCHHHHHHHHHHHHHHHHHHHHH---HCCEEEEEECCEEECCCCCCCCCCCCCCCCHHH
T ss_conf 9873203654--------13389899777677999999999997---197699963445743898988877899997024
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHC--CEEEEECCCCCCCHHHHCCCCCHHHHHHHHHCCCC-------CCCCCHHHHHHHH
Q ss_conf 00001567763147799842108--58975622872685575079847999999826889-------9876699999999
Q gi|254780462|r 159 MAPAKSALESSTKYLACDYGGMN--IRINAISAGPVRTLAGASISNGRDIAAWSKENSPL-------KRTVSLEDIGNSA 229 (267)
Q Consensus 159 Y~asKaal~~ltr~lA~El~~~g--IrVNaIaPG~i~T~~~~~~~~~~~~~~~~~~~~Pl-------~r~~~~edva~~v 229 (267)
T Consensus 124 YG~sKl~GE~~v~~~~----~~~~I~Rtswv~g~-----~g~nF--v~tml~la~~~~~l~vv~Dq~gsPt~~~dlA~~i 192 (281)
T COG1091 124 YGRSKLAGEEAVRAAG----PRHLILRTSWVYGE-----YGNNF--VKTMLRLAKEGKELKVVDDQYGSPTYTEDLADAI 192 (281)
T ss_pred HHHHHHHHHHHHHHHC----CCEEEEEEEEEECC-----CCCCH--HHHHHHHHHCCCCEEEECCEEECCCCHHHHHHHH
T ss_conf 5477897899999739----98799985655458-----88778--9999998505992699798453874699999999
Q ss_pred HHHHCHHH
Q ss_conf 98619887
Q gi|254780462|r 230 LYLLSYLS 237 (267)
Q Consensus 230 ~fL~Sd~s 237 (267)
T Consensus 193 ~~ll~~~~ 200 (281)
T COG1091 193 LELLEKEK 200 (281)
T ss_pred HHHHHCCC
T ss_conf 99983455