HHsearch alignment for GI: 254780462 and conserved domain: COG2263
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis].
Probab=93.99 E-value=0.49 Score=26.11 Aligned_cols=121 Identities=17% Similarity=0.119 Sum_probs=76.5
Q ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCE-EEEEECCHHHHHHHH-HHHHCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 98756887899938898852589999999989988-999948978999999-9985159649998779999999999999
Q gi|254780462|r 1 MINILKGKRGLIMGVANDHSIAWGIAKVLHSAGAQ-LAFSYQGESIGKRLK-PLALTVDSDFMIPCNVEDPSSMDLLFER 78 (267)
Q Consensus 1 mm~~L~gK~~lItGas~~~GIG~aia~~l~~~Ga~-V~i~~~~~~~~~~~~-~l~~~~~~~~~~~~Dv~~~~~v~~~~~~ 78 (267)
T Consensus 40 ~~g~l~g~~V~DlG~G-T-G~---La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~-------- 106 (198)
T COG2263 40 LRGDLEGKTVLDLGAG-T-GI---LAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR-------- 106 (198)
T ss_pred HCCCCCCCEEEECCCC-C-CH---HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCHHHCC--------
T ss_conf 7388478888882788-4-78---899998629717999936989999999888860884699982101147--------
Q ss_pred HHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCC
Q ss_conf 99983798899936833177655576125799999776501661123222100222446841689887520145643210
Q gi|254780462|r 79 IKERWETLDFVVHSIAFSDKNELRGPYYNTSRDNFIQTMLVSCFSFTEIVRRAAQLMPHGGAMITLTYGGSMRVVPNYNA 158 (267)
Q Consensus 79 ~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~e~~~~~~~vn~~~~~~~~~~~~~~~~~~G~II~isS~~~~~~~~~~~~ 158 (267)
T Consensus 107 -----~~~dtvimNP---PFG~~---~rhaDr~Fl~~Ale~s-----------------------------------~vV 140 (198)
T COG2263 107 -----GKFDTVIMNP---PFGSQ---RRHADRPFLLKALEIS-----------------------------------DVV 140 (198)
T ss_pred -----CCCCEEEECC---CCCCC---CCCCCHHHHHHHHHHH-----------------------------------HEE
T ss_conf -----7666699789---97322---1368889999999740-----------------------------------147
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0000156776314779984210
Q gi|254780462|r 159 MAPAKSALESSTKYLACDYGGM 180 (267)
Q Consensus 159 Y~asKaal~~ltr~lA~El~~~ 180 (267)
T Consensus 141 YsiH~a~~~~f~~~~~~~~G~~ 162 (198)
T COG2263 141 YSIHKAGSRDFVEKFAADLGGT 162 (198)
T ss_pred EEEECCCCHHHHHHHHHHCCCE
T ss_conf 8740166079999998854970