HHsearch alignment for GI: 254780462 and conserved domain: PRK09009
>PRK09009 C factor cell-cell signaling protein; Provisional.
Probab=100.00 E-value=0 Score=329.75 Aligned_cols=223 Identities=14% Similarity=0.156 Sum_probs=186.1
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCE
Q ss_conf 89993889885258999999998998899994897899999999851596499987799999999999999998379889
Q gi|254780462|r 9 RGLIMGVANDHSIAWGIAKVLHSAGAQLAFSYQGESIGKRLKPLALTVDSDFMIPCNVEDPSSMDLLFERIKERWETLDF 88 (267)
Q Consensus 9 ~~lItGas~~~GIG~aia~~l~~~Ga~V~i~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~ 88 (267)
T Consensus 2 nVLITGas~--GIG~aia~~l~~~~~~~~v~~~~~~~~-----~~~~~~~v~~~~~Dvt~~~~i~~~~----~~~~~iD~ 70 (235)
T PRK09009 2 NILIVGGSG--GIGKAMVKQLLETYPDATVHATYRHHK-----PDFRHDNVQWHALDVTDEAEIKQLS----EQFTQLDW 70 (235)
T ss_pred EEEEECCCH--HHHHHHHHHHHHCCCCEEEEEEECCCC-----CCCCCCCEEEEECCCCCHHHHHHHH----HHHCCCCE
T ss_conf 799975563--999999999985699809999737765-----4445798389987479999999999----87087789
Q ss_pred EEECCCCCCCCC--CCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCC--CCEEEEEEEEEECC---CCCCCCCCHH
Q ss_conf 993683317765--5576125799999776501661123222100222446--84168988752014---5643210000
Q gi|254780462|r 89 VVHSIAFSDKNE--LRGPYYNTSRDNFIQTMLVSCFSFTEIVRRAAQLMPH--GGAMITLTYGGSMR---VVPNYNAMAP 161 (267)
Q Consensus 89 lVnnAg~~~~~~--~~~~~~~~~~e~~~~~~~vn~~~~~~~~~~~~~~~~~--~G~II~isS~~~~~---~~~~~~~Y~a 161 (267)
T Consensus 71 linnAGi~~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~l~~~~~~~iv~isS~~g~i~~~~~~g~~~Y~a 150 (235)
T PRK09009 71 LINCVGMLHTQDKGPEKSLQSLDSDFFLQNITLNTLPSLLLAKHFTPLLKQSESARFAVISAKVGSISDNRLGGWYSYRA 150 (235)
T ss_pred EEECCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHH
T ss_conf 99767524467777646867789999999998861999999999999998607876401222341577888886236699
Q ss_pred HHHHHHHHHHHHHHHHHHH--CCEEEEECCCCCCCHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCHHHCC
Q ss_conf 0156776314779984210--85897562287268557507984799999982688998766999999999861988788
Q gi|254780462|r 162 AKSALESSTKYLACDYGGM--NIRINAISAGPVRTLAGASISNGRDIAAWSKENSPLKRTVSLEDIGNSALYLLSYLSNG 239 (267)
Q Consensus 162 sKaal~~ltr~lA~El~~~--gIrVNaIaPG~i~T~~~~~~~~~~~~~~~~~~~~Pl~r~~~~edva~~v~fL~Sd~s~~ 239 (267)
T Consensus 151 SKaAl~~lt~~la~E~~~~~~~i~V~~i~PG~v~T~m~~~----------~~~~~p~~r~~~PeeiA~~i~~L~s~~s~~ 220 (235)
T PRK09009 151 SKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTPLSKP----------FQQNVPKGKLFTPEYVAQCLLGIIANATPA 220 (235)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCH----------HHHCCCCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 9999999999999997642699689998148656712306----------785799888829999999999997169723
Q ss_pred CCCCEEEECCCCC
Q ss_conf 7886899868844
Q gi|254780462|r 240 VTGEIHYVDCGYN 252 (267)
Q Consensus 240 iTGq~l~VDGG~s 252 (267)
T Consensus 221 ~tG~~i~vdG~~~ 233 (235)
T PRK09009 221 QSGSFLAYDGEEL 233 (235)
T ss_pred CCCCEEEECCCCC
T ss_conf 6988897897787