HHsearch alignment for GI: 254780462 and conserved domain: PRK09183

>PRK09183 transposase/IS protein; Provisional.
Probab=94.29  E-value=0.42  Score=26.48  Aligned_cols=120  Identities=16%  Similarity=0.239  Sum_probs=73.1

Q ss_pred             CCCEEEEECCCCCCC---HHHHHHHHHHHCCCEEEEEECCHHHHHHH----------HHHHHCCCCE-EEEECCC----C
Q ss_conf             887899938898852---58999999998998899994897899999----------9998515964-9998779----9
Q gi|254780462|r    6 KGKRGLIMGVANDHS---IAWGIAKVLHSAGAQLAFSYQGESIGKRL----------KPLALTVDSD-FMIPCNV----E   67 (267)
Q Consensus         6 ~gK~~lItGas~~~G---IG~aia~~l~~~Ga~V~i~~~~~~~~~~~----------~~l~~~~~~~-~~~~~Dv----~   67 (267)
T Consensus       100 ~~~Nvil~G~~Gt-GKThLA~Alg~~A~~~G~~v~f~~~~~-L~~~L~~a~~~~~~~~~l~r~l~~~dLLIiDdlG~~~~  177 (258)
T PRK09183        100 RNENIVLLGPSGV-GKTHLAIALGYEAVRAGIKVRFTTAAD-LLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPF  177 (258)
T ss_pred             CCCCEEEECCCCC-CHHHHHHHHHHHHHHCCCEEEEEEHHH-HHHHHHHHHHCCCHHHHHHHHHCCCCEEEEHHHHCCCC
T ss_conf             5886799899998-689999999999998799399978999-99999999876859999998743465144313315468


Q ss_pred             CHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHH-CCCCHHHHHHHHCCCCCCCCCEEEEEEE
Q ss_conf             999999999999998379889993683317765557612579999977650-1661123222100222446841689887
Q gi|254780462|r   68 DPSSMDLLFERIKERWETLDFVVHSIAFSDKNELRGPYYNTSRDNFIQTML-VSCFSFTEIVRRAAQLMPHGGAMITLTY  146 (267)
Q Consensus        68 ~~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~e~~~~~~~-vn~~~~~~~~~~~~~~~~~~G~II~isS  146 (267)
T Consensus       178 ~~~~~~~lfeli~~Rye~~S~IiTS--------------n~~~~~W~~~f~~D~~-----la~AilDRL~H~a~~i~l~G  238 (258)
T PRK09183        178 SQEEANLFFQVIAKRYEKGAMILTS--------------NLPFGQWDQTFAGDAA-----LTSAMLDRLLHHSHVVQIKG  238 (258)
T ss_pred             CHHHHHHHHHHHHHHHCCCCEEEEC--------------CCCHHHHHHHCCCCHH-----HHHHHHHHHCCCEEEEEECC
T ss_conf             8889999999999985767789988--------------9997898565168699-----99999998604617997458