HHsearch alignment for GI: 254780462 and conserved domain: PRK09186
>PRK09186 flagellin modification protein A; Provisional.
Probab=100.00 E-value=0 Score=424.29 Aligned_cols=241 Identities=23% Similarity=0.284 Sum_probs=210.6
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHCCC-CEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 56887899938898852589999999989988999948978999-9999985159-649998779999999999999999
Q gi|254780462|r 4 ILKGKRGLIMGVANDHSIAWGIAKVLHSAGAQLAFSYQGESIGK-RLKPLALTVD-SDFMIPCNVEDPSSMDLLFERIKE 81 (267)
Q Consensus 4 ~L~gK~~lItGas~~~GIG~aia~~l~~~Ga~V~i~~~~~~~~~-~~~~l~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~ 81 (267)
T Consensus 1 lL~gK~~lVTGgs~--GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~Dvt~~~~v~~~~~~~~~ 78 (255)
T PRK09186 1 MLEGKTILITGAGG--LIGSALVKAILEAGGIVIAADINKEALNKLLESLGTIEKTKLTLVELDITDQESLEEFLSKSQE 78 (255)
T ss_pred CCCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 98959899979586--8999999999987999999969889999999999870598079998468999999999999999
Q ss_pred HHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCC--CCEEEEEEEEEECCC-------
Q ss_conf 83798899936833177655576125799999776501661123222100222446--841689887520145-------
Q gi|254780462|r 82 RWETLDFVVHSIAFSDKNELRGPYYNTSRDNFIQTMLVSCFSFTEIVRRAAQLMPH--GGAMITLTYGGSMRV------- 152 (267)
Q Consensus 82 ~~g~iD~lVnnAg~~~~~~~~~~~~~~~~e~~~~~~~vn~~~~~~~~~~~~~~~~~--~G~II~isS~~~~~~------- 152 (267)
T Consensus 79 ~~g~id~lVnnA~~~~~~-~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IVnisSi~g~~~~~~~~~~ 157 (255)
T PRK09186 79 RYGKIDGAVNCAYPRNKQ-YGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGSLVNISSIYGVVAPKFEIYE 157 (255)
T ss_pred HHCCCCEEEECCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHCCCCCCCCC
T ss_conf 819977899757667876-7777010999999999999839999999999998874289738995667873476421126
Q ss_pred ---CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf ---64321000001567763147799842108589756228726855750798479999998268899876699999999
Q gi|254780462|r 153 ---VPNYNAMAPAKSALESSTKYLACDYGGMNIRINAISAGPVRTLAGASISNGRDIAAWSKENSPLKRTVSLEDIGNSA 229 (267)
Q Consensus 153 ---~~~~~~Y~asKaal~~ltr~lA~El~~~gIrVNaIaPG~i~T~~~~~~~~~~~~~~~~~~~~Pl~r~~~~edva~~v 229 (267)
T Consensus 158 g~~~~~~~~Y~asKaal~~ltr~lA~e~a~~gIrVN~VaPG~i~~~~------~~~~~~~~~~~~~~~~~~~p~dia~~v 231 (255)
T PRK09186 158 GTSMTSPVEYAAIKSGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQ------PEAFLNAYKKSCNGKGMLDPEDICGSL 231 (255)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCC------CHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 87654467679988999999999999967589899998557688999------899999998635577998999999999
Q ss_pred HHHHCHHHCCCCCCEEEECCCCCE
Q ss_conf 986198878878868998688443
Q gi|254780462|r 230 LYLLSYLSNGVTGEIHYVDCGYNI 253 (267)
Q Consensus 230 ~fL~Sd~s~~iTGq~l~VDGG~s~ 253 (267)
T Consensus 232 ~fL~Sd~s~~iTGq~i~VDGG~sl 255 (255)
T PRK09186 232 VFLLSDQSKYITGQNIIVDDGFSL 255 (255)
T ss_pred HHHHCCHHCCCCCCEEEECCCCCC
T ss_conf 999570536801852883858066