HHsearch alignment for GI: 254780462 and conserved domain: PRK11730
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed.
Probab=96.67 E-value=0.025 Score=33.93 Aligned_cols=213 Identities=13% Similarity=0.062 Sum_probs=102.4
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHH-HHHHHCCCCEEEEECCCCCHHHHHHHHHHHH-----
Q ss_conf 8789993889885258999999998998899994897899999-9998515964999877999999999999999-----
Q gi|254780462|r 7 GKRGLIMGVANDHSIAWGIAKVLHSAGAQLAFSYQGESIGKRL-KPLALTVDSDFMIPCNVEDPSSMDLLFERIK----- 80 (267)
Q Consensus 7 gK~~lItGas~~~GIG~aia~~l~~~Ga~V~i~~~~~~~~~~~-~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~----- 80 (267)
T Consensus 313 i~~v~ViGa-G~--MG~GIA~~~a~aG~~V~l~D~~~e~l~~g~~~~~~~~~~~--v~~g~~~~~~~~~~l~ri~~~~~~ 387 (715)
T PRK11730 313 VKQAAVLGA-GI--MGGGIAYQSASKGVPVIMKDINQKALDLGMNEAAKLLNKQ--VERGRIDGLKMAGVLSTITPTLDY 387 (715)
T ss_pred CCEEEEECC-CC--CHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHH--HHCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 627999787-71--0799999999579957999789999999999999999999--864899879999999568741540
Q ss_pred HHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCC-----CHHHHHHHHCCCCCCCCCEEEEEE--EEEECCCC
Q ss_conf 98379889993683317765557612579999977650166-----112322210022244684168988--75201456
Q gi|254780462|r 81 ERWETLDFVVHSIAFSDKNELRGPYYNTSRDNFIQTMLVSC-----FSFTEIVRRAAQLMPHGGAMITLT--YGGSMRVV 153 (267)
Q Consensus 81 ~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~e~~~~~~~vn~-----~~~~~~~~~~~~~~~~~G~II~is--S~~~~~~~ 153 (267)
T Consensus 388 ~~l~~~DlVIEAV~----E~l--~~K~~vf~~l~~~~~~~aIlAsNTSsl~i~-~lA~~~~~Per~iG~HFfnP~~~m~L 460 (715)
T PRK11730 388 AGFKDVDVVVEAVV----ENP--KVKAAVLAEVEQKVREDTILASNTSTISIS-LLAKALKRPENFCGMHFFNPVHRMPL 460 (715)
T ss_pred HHHCCCCEEEEECC----CCH--HHHHHHHHHHHHHCCCCEEEEECCCCCCHH-HHHHHCCCCCCEEEEEECCCCCCCCE
T ss_conf 24335888998543----658--899999999986558753885157657789-99975168211565221488441644
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHC-----------CCCCHHHHHHHHH--CCCCCCC
Q ss_conf -4321000001567763147799842108589756228726855750-----------7984799999982--6889987
Q gi|254780462|r 154 -PNYNAMAPAKSALESSTKYLACDYGGMNIRINAISAGPVRTLAGAS-----------ISNGRDIAAWSKE--NSPLKRT 219 (267)
Q Consensus 154 -~~~~~Y~asKaal~~ltr~lA~El~~~gIrVNaIaPG~i~T~~~~~-----------~~~~~~~~~~~~~--~~Pl~r~ 219 (267)
T Consensus 461 VEVv~g~~Ts~~t~~~~~-~~~~~lgK~pVvv~-d~pGFi~NRil~~~~~ea~~l~~eGa~~~~ID~a~~~~~G~pmGP~ 538 (715)
T PRK11730 461 VEVIRGEKTSDETIATVV-AYASKMGKTPIVVN-DCPGFFVNRVLFPYFAGFSQLLRDGADFRQIDKVMEKQFGWPMGPA 538 (715)
T ss_pred EEEECCCCCCHHHHHHHH-HHHHHCCCCEEEEE-CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHH
T ss_conf 888168999999999999-99998198238982-4686058789999999999999879999999999987479977787
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 66999999999861
Q gi|254780462|r 220 VSLEDIGNSALYLL 233 (267)
Q Consensus 220 ~~~edva~~v~fL~ 233 (267)
T Consensus 539 ~l~D~vGlDv~~~v 552 (715)
T PRK11730 539 YLLDVVGIDTAHHA 552 (715)
T ss_pred HHHHHHCCHHHHHH
T ss_conf 88763160889999