HHsearch alignment for GI: 254780462 and conserved domain: TIGR00438
>TIGR00438 rrmJ ribosomal RNA large subunit methyltransferase J; InterPro: IPR004512 The ribosomal RNA large subunit methyltransferase J 2.1.1 from EC methylates the 23S rRNA. It specifically methylates the uridine in position 2552 of 23s rRNA in the 50S particle using S-adenosyl-L-methionine as a substrate. It was previously known as cell division protein ftsJ.; GO: 0016436 rRNA (uridine) methyltransferase activity, 0006364 rRNA processing.
Probab=95.52 E-value=0.07 Score=31.22 Aligned_cols=117 Identities=13% Similarity=0.187 Sum_probs=76.7
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHC
Q ss_conf 68878999388988525899999999899889999489789999999985159649998779999999999999999837
Q gi|254780462|r 5 LKGKRGLIMGVANDHSIAWGIAKVLHSAGAQLAFSYQGESIGKRLKPLALTVDSDFMIPCNVEDPSSMDLLFERIKERWE 84 (267)
Q Consensus 5 L~gK~~lItGas~~~GIG~aia~~l~~~Ga~V~i~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 84 (267)
T Consensus 31 k~G~~VlDLGAAPG-GWsQva~~~~G~kG-~ViA~Dl~~-----~k~--FP~~nv~fi~GDftdee~l~ki~~~~g~dek 101 (192)
T TIGR00438 31 KPGDTVLDLGAAPG-GWSQVAVEQVGGKG-RVIAVDLQP-----MKG--FPIENVDFIRGDFTDEEVLNKILERVGDDEK 101 (192)
T ss_pred ECCCEEEECCCCCC-CHHHHHHHHHCCCC-EEEEEECCC-----CCC--CCCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 07886786578987-38778877606853-389985455-----788--5646614754476787899999985789874
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEE
Q ss_conf 9889993683317765557612579999977650166112322210022244684168
Q gi|254780462|r 85 TLDFVVHSIAFSDKNELRGPYYNTSRDNFIQTMLVSCFSFTEIVRRAAQLMPHGGAMI 142 (267)
Q Consensus 85 ~iD~lVnnAg~~~~~~~~~~~~~~~~e~~~~~~~vn~~~~~~~~~~~~~~~~~~G~II 142 (267)
T Consensus 102 k~DVV~SDaaP-----~~SG~~~iDh---~Rs~dL-v~~aL~ia~~---vL~~~Gnfv 147 (192)
T TIGR00438 102 KVDVVMSDAAP-----NISGIWDIDH---LRSIDL-VELALDIAKE---VLKPKGNFV 147 (192)
T ss_pred EEEEEEECCCC-----CCCCCCCCCH---HHHHHH-HHHHHHHHHH---HHHCCCCEE
T ss_conf 37789852688-----8789875434---437999-9999999999---861589899