HHsearch alignment for GI: 254780462 and conserved domain: TIGR01214
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process.
Probab=98.93 E-value=1e-08 Score=72.82 Aligned_cols=192 Identities=18% Similarity=0.194 Sum_probs=130.2
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCE
Q ss_conf 89993889885258999999998998899994897899999999851596499987799999999999999998379889
Q gi|254780462|r 9 RGLIMGVANDHSIAWGIAKVLHSAGAQLAFSYQGESIGKRLKPLALTVDSDFMIPCNVEDPSSMDLLFERIKERWETLDF 88 (267)
Q Consensus 9 ~~lItGas~~~GIG~aia~~l~~~Ga~V~i~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~ 88 (267)
T Consensus 1 rilitGa~GQ--lG~~L~~~l~~~g~~~~~~~~~~~~~~---------~-~~~~~~Dl~dP~~l~~~~r~~-----~Pd~ 63 (317)
T TIGR01214 1 RILITGANGQ--LGRELVQQLSKPGRVVVALTRSTRLKL---------A-ARWSQLDLTDPEALEELLRAI-----RPDA 63 (317)
T ss_pred CEEEECCCCH--HHHHHHHHCCCCCCEEEEECCCCCCCH---------H-HHHHHHCCCCHHHHHHHHHHH-----CCCE
T ss_conf 9788738756--799999970788827864368777611---------3-365440622468899999852-----8753
Q ss_pred EEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEEEEEE-------CCCCCC------
Q ss_conf 9936833177655576125799999776501661123222100222446841689887520-------145643------
Q gi|254780462|r 89 VVHSIAFSDKNELRGPYYNTSRDNFIQTMLVSCFSFTEIVRRAAQLMPHGGAMITLTYGGS-------MRVVPN------ 155 (267)
Q Consensus 89 lVnnAg~~~~~~~~~~~~~~~~e~~~~~~~vn~~~~~~~~~~~~~~~~~~G~II~isS~~~-------~~~~~~------ 155 (267)
T Consensus 64 vvntAAYT~V-----D~AE~~~---~~AyavNa~A~~~lA~~A~~---~Ga~~vh~STDYVFDGdfGG~~~~PY~e~D~~ 132 (317)
T TIGR01214 64 VVNTAAYTDV-----DGAESDP---EKAYAVNALAPQNLARAAAR---VGARLVHISTDYVFDGDFGGEGKRPYREDDET 132 (317)
T ss_pred EEECCHHCCC-----CCCCCCH---HHHHHHHHHHHHHHHHHHHH---CCCEEEEEEECEEECCCCCCCCCCCCCCCCCC
T ss_conf 7623011010-----0003777---78765740789999999986---69159998634234475578886688764687
Q ss_pred --CCCCHHHHHHHHHHHHHHHH--HHHHHCCEEEEECCCCCCCHHHHC-CCCCHHHHHHH-HHCCCC----CCCCCH---
Q ss_conf --21000001567763147799--842108589756228726855750-79847999999-826889----987669---
Q gi|254780462|r 156 --YNAMAPAKSALESSTKYLAC--DYGGMNIRINAISAGPVRTLAGAS-ISNGRDIAAWS-KENSPL----KRTVSL--- 222 (267)
Q Consensus 156 --~~~Y~asKaal~~ltr~lA~--El~~~gIrVNaIaPG~i~T~~~~~-~~~~~~~~~~~-~~~~Pl----~r~~~~--- 222 (267)
T Consensus 133 nPlnvYG~SK~~GE~a~~~~~~~e~~lI--vRTs-----WlY~~~g~~g~NF~~tMlrLaG~~~~~l~vV~DQ~GsPTy~ 205 (317)
T TIGR01214 133 NPLNVYGQSKLAGEQAVRAAGPDENALI--VRTS-----WLYGAGGGSGRNFVKTMLRLAGKEREELRVVDDQIGSPTYA 205 (317)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCEEE--EEEE-----EEECCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCHHHH
T ss_conf 9843121115689999998379985788--9852-----13448998842179999985378998403785576873589
Q ss_pred HHHHHHHHHHHCH
Q ss_conf 9999999986198
Q gi|254780462|r 223 EDIGNSALYLLSY 235 (267)
Q Consensus 223 edva~~v~fL~Sd 235 (267)
T Consensus 206 ~dLA~~~~~ll~~ 218 (317)
T TIGR01214 206 KDLARAIAALLER 218 (317)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999976