HHsearch alignment for GI: 254780462 and conserved domain: TIGR01214

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process.
Probab=98.93  E-value=1e-08  Score=72.82  Aligned_cols=192  Identities=18%  Similarity=0.194  Sum_probs=130.2

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCE
Q ss_conf             89993889885258999999998998899994897899999999851596499987799999999999999998379889
Q gi|254780462|r    9 RGLIMGVANDHSIAWGIAKVLHSAGAQLAFSYQGESIGKRLKPLALTVDSDFMIPCNVEDPSSMDLLFERIKERWETLDF   88 (267)
Q Consensus         9 ~~lItGas~~~GIG~aia~~l~~~Ga~V~i~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~   88 (267)
T Consensus         1 rilitGa~GQ--lG~~L~~~l~~~g~~~~~~~~~~~~~~---------~-~~~~~~Dl~dP~~l~~~~r~~-----~Pd~   63 (317)
T TIGR01214         1 RILITGANGQ--LGRELVQQLSKPGRVVVALTRSTRLKL---------A-ARWSQLDLTDPEALEELLRAI-----RPDA   63 (317)
T ss_pred             CEEEECCCCH--HHHHHHHHCCCCCCEEEEECCCCCCCH---------H-HHHHHHCCCCHHHHHHHHHHH-----CCCE
T ss_conf             9788738756--799999970788827864368777611---------3-365440622468899999852-----8753


Q ss_pred             EEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEEEEEE-------CCCCCC------
Q ss_conf             9936833177655576125799999776501661123222100222446841689887520-------145643------
Q gi|254780462|r   89 VVHSIAFSDKNELRGPYYNTSRDNFIQTMLVSCFSFTEIVRRAAQLMPHGGAMITLTYGGS-------MRVVPN------  155 (267)
Q Consensus        89 lVnnAg~~~~~~~~~~~~~~~~e~~~~~~~vn~~~~~~~~~~~~~~~~~~G~II~isS~~~-------~~~~~~------  155 (267)
T Consensus        64 vvntAAYT~V-----D~AE~~~---~~AyavNa~A~~~lA~~A~~---~Ga~~vh~STDYVFDGdfGG~~~~PY~e~D~~  132 (317)
T TIGR01214        64 VVNTAAYTDV-----DGAESDP---EKAYAVNALAPQNLARAAAR---VGARLVHISTDYVFDGDFGGEGKRPYREDDET  132 (317)
T ss_pred             EEECCHHCCC-----CCCCCCH---HHHHHHHHHHHHHHHHHHHH---CCCEEEEEEECEEECCCCCCCCCCCCCCCCCC
T ss_conf             7623011010-----0003777---78765740789999999986---69159998634234475578886688764687


Q ss_pred             --CCCCHHHHHHHHHHHHHHHH--HHHHHCCEEEEECCCCCCCHHHHC-CCCCHHHHHHH-HHCCCC----CCCCCH---
Q ss_conf             --21000001567763147799--842108589756228726855750-79847999999-826889----987669---
Q gi|254780462|r  156 --YNAMAPAKSALESSTKYLAC--DYGGMNIRINAISAGPVRTLAGAS-ISNGRDIAAWS-KENSPL----KRTVSL---  222 (267)
Q Consensus       156 --~~~Y~asKaal~~ltr~lA~--El~~~gIrVNaIaPG~i~T~~~~~-~~~~~~~~~~~-~~~~Pl----~r~~~~---  222 (267)
T Consensus       133 nPlnvYG~SK~~GE~a~~~~~~~e~~lI--vRTs-----WlY~~~g~~g~NF~~tMlrLaG~~~~~l~vV~DQ~GsPTy~  205 (317)
T TIGR01214       133 NPLNVYGQSKLAGEQAVRAAGPDENALI--VRTS-----WLYGAGGGSGRNFVKTMLRLAGKEREELRVVDDQIGSPTYA  205 (317)
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCEEE--EEEE-----EEECCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCHHHH
T ss_conf             9843121115689999998379985788--9852-----13448998842179999985378998403785576873589


Q ss_pred             HHHHHHHHHHHCH
Q ss_conf             9999999986198
Q gi|254780462|r  223 EDIGNSALYLLSY  235 (267)
Q Consensus       223 edva~~v~fL~Sd  235 (267)
T Consensus       206 ~dLA~~~~~ll~~  218 (317)
T TIGR01214       206 KDLARAIAALLER  218 (317)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999976