HHsearch alignment for GI: 254780462 and conserved domain: TIGR01283
>TIGR01283 nifE nitrogenase MoFe cofactor biosynthesis protein NifE; InterPro: IPR005973 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene. Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes. It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I. ; GO: 0005515 protein binding, 0006461 protein complex assembly, 0009399 nitrogen fixation.
Probab=94.86 E-value=0.29 Score=27.44 Aligned_cols=140 Identities=11% Similarity=0.104 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHCC-CCE-EEEE-C-CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC----------CCCCC-
Q ss_conf 8999999998515-964-9998-7-799999999999999998379889993683317765557----------61257-
Q gi|254780462|r 44 SIGKRLKPLALTV-DSD-FMIP-C-NVEDPSSMDLLFERIKERWETLDFVVHSIAFSDKNELRG----------PYYNT- 108 (267)
Q Consensus 44 ~~~~~~~~l~~~~-~~~-~~~~-~-Dv~~~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~----------~~~~~- 108 (267)
T Consensus 113 KL~~aI~e~v~~Y~P~AvFVYsTCv~alIGDD~~AVCk~A~~k~G~~ViPV~s~GF~G~NK~lGnk~AcdALl~~vig~~ 192 (470)
T TIGR01283 113 KLFHAIREIVERYHPAAVFVYSTCVVALIGDDLEAVCKAAAEKYGIPVIPVDSEGFYGSNKNLGNKLACDALLKHVIGTR 192 (470)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCEECCEECCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 89999999986329974899457131024488899999997235860675157887777755002789999998638988
Q ss_pred --------CHHHHHHHHHCCCCHHHHHHHHCC---CCCCCCCEEEEEEEEEECCCC-------CCCCCCHHHHHHHHHHH
Q ss_conf --------999997765016611232221002---224468416898875201456-------43210000015677631
Q gi|254780462|r 109 --------SRDNFIQTMLVSCFSFTEIVRRAA---QLMPHGGAMITLTYGGSMRVV-------PNYNAMAPAKSALESST 170 (267)
Q Consensus 109 --------~~e~~~~~~~vn~~~~~~~~~~~~---~~~~~~G~II~isS~~~~~~~-------~~~~~Y~asKaal~~lt 170 (267)
T Consensus 193 ep~~~~~~~~~~~~~~~diNliGEFN~AGE~W~v~pLleklG-i~V~~~~tGD~r~~ev~~aHrA~lN~v~CSks~~nlA 271 (470)
T TIGR01283 193 EPEPIPKSARRAGTTVHDINLIGEFNVAGEFWLVKPLLEKLG-IRVLATITGDSRYAEVQTAHRAKLNMVQCSKSMINLA 271 (470)
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECHHCCCCCCCCCCHHHHCC-CEEEEECCCCCCHHHHHCCCCCCEEEEECCHHHHHHH
T ss_conf 866576544567665674111523000011110010143389-1799973788878998404115543357523678899
Q ss_pred HHHHHHHH-HHCCEEE
Q ss_conf 47799842-1085897
Q gi|254780462|r 171 KYLACDYG-GMNIRIN 185 (267)
Q Consensus 171 r~lA~El~-~~gIrVN 185 (267)
T Consensus 272 ~~m~~~YGIPy-f~~S 286 (470)
T TIGR01283 272 RKMEEKYGIPY-FEVS 286 (470)
T ss_pred HHHHHHCCCCE-EEEC
T ss_conf 99996468975-8721