HHsearch alignment for GI: 254780462 and conserved domain: TIGR01472
>TIGR01472 gmd GDP-mannose 4,6-dehydratase; InterPro: IPR006368 This family represent GDP-mannose 4,6-dehydratase, also known as GDP-D-mannose dehydratase. This enzyme converts GDP-mannose to GDP-4-dehydro-6-deoxy-D-mannose, the first of three steps for the conversion of GDP-mannose to GDP-fucose in animals, plants, and bacteria. In bacteria, GDP-L-fucose acts as a precursor of surface antigens such as the extracellular polysaccharide colanic acid of Escherichia coli. Excluded from this family are members of the clade that are poorly related because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase .; GO: 0008446 GDP-mannose 46-dehydratase activity, 0019673 GDP-mannose metabolic process, 0005622 intracellular.
Probab=97.82 E-value=0.00011 Score=48.30 Aligned_cols=225 Identities=17% Similarity=0.023 Sum_probs=137.9
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEE-ECC-----HHHHHHHHHHHHCCCC--EEE-EECCCCCHHHHHHHHHH
Q ss_conf 78999388988525899999999899889999-489-----7899999999851596--499-98779999999999999
Q gi|254780462|r 8 KRGLIMGVANDHSIAWGIAKVLHSAGAQLAFS-YQG-----ESIGKRLKPLALTVDS--DFM-IPCNVEDPSSMDLLFER 78 (267)
Q Consensus 8 K~~lItGas~~~GIG~aia~~l~~~Ga~V~i~-~~~-----~~~~~~~~~l~~~~~~--~~~-~~~Dv~~~~~v~~~~~~ 78 (267)
T Consensus 1 k~ALiTGiTGQ--DGSYLAE~LL~~GYeVHG~~RRSSSfNT~Ri~hiY~~~h~~~~r~A~~fLHYGDlTDs~~L~~~i~~ 78 (365)
T TIGR01472 1 KVALITGITGQ--DGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHKEEKRRALMFLHYGDLTDSSNLVKLIDE 78 (365)
T ss_pred CEEEEECCCCC--CHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 93688345557--6789999987269687645862554252245676405354101661354204421068999999740
Q ss_pred HHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCC--CCCCCEEEEE---EE-EEE---
Q ss_conf 99983798899936833177655576125799999776501661123222100222--4468416898---87-520---
Q gi|254780462|r 79 IKERWETLDFVVHSIAFSDKNELRGPYYNTSRDNFIQTMLVSCFSFTEIVRRAAQL--MPHGGAMITL---TY-GGS--- 149 (267)
Q Consensus 79 ~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~e~~~~~~~vn~~~~~~~~~~~~~~--~~~~G~II~i---sS-~~~--- 149 (267)
T Consensus 79 ~-----kP~EiYNLAAQSH--------V~VSFe~PeYTa~~~g~GTLrlLEA~r~hni~gl~~~~rFYQAStSElYG~v~ 145 (365)
T TIGR01472 79 I-----KPTEIYNLAAQSH--------VKVSFEIPEYTADVDGIGTLRLLEAVRSHNILGLIKEIRFYQASTSELYGEVQ 145 (365)
T ss_pred C-----CCCEEECCCCCCC--------EEEECCCCCCHHCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHCCCCC
T ss_conf 4-----8863420202371--------03541652000012443177899987423341412030255245231136555
Q ss_pred ------CCCCCCCCCCHHHHHHHHHHHHHHHHHH---HHHCCEEEEECCCCCCCHHHHCCCCCHH-HH-----HHHHHCC
Q ss_conf ------1456432100000156776314779984---2108589756228726855750798479-99-----9998268
Q gi|254780462|r 150 ------MRVVPNYNAMAPAKSALESSTKYLACDY---GGMNIRINAISAGPVRTLAGASISNGRD-IA-----AWSKENS 214 (267)
Q Consensus 150 ------~~~~~~~~~Y~asKaal~~ltr~lA~El---~~~gIrVNaIaPG~i~T~~~~~~~~~~~-~~-----~~~~~~~ 214 (267)
T Consensus 146 ~~PQ~E~TPF~PRSPYAaAK~yA~w~tvNYREAYgL~A~nGILFNHESP~RGetFVTRKITra~a~I~~G~~~~lyLGNL 225 (365)
T TIGR01472 146 EIPQNETTPFYPRSPYAAAKLYAYWITVNYREAYGLFAVNGILFNHESPRRGETFVTRKITRAAAKIKLGLQEKLYLGNL 225 (365)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHEEEEECCCCCCHHCCEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 78888888768887689998845431021210034100035210467887788532258999999986156311120275
Q ss_pred -CCCCCCCHHHHHHHHHHHHC-HHH-CCC--CCCEEEE
Q ss_conf -89987669999999998619-887-887--8868998
Q gi|254780462|r 215 -PLKRTVSLEDIGNSALYLLS-YLS-NGV--TGEIHYV 247 (267)
Q Consensus 215 -Pl~r~~~~edva~~v~fL~S-d~s-~~i--TGq~l~V 247 (267)
T Consensus 226 dA~RDWGhAkDYV~aMWLMLQ~d~P~DYViATG~t~SV 263 (365)
T TIGR01472 226 DAKRDWGHAKDYVEAMWLMLQQDKPDDYVIATGETHSV 263 (365)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCEEEH
T ss_conf 44106650566999988752786889768875733338