HHsearch alignment for GI: 254780462 and conserved domain: TIGR01472

>TIGR01472 gmd GDP-mannose 4,6-dehydratase; InterPro: IPR006368 This family represent GDP-mannose 4,6-dehydratase, also known as GDP-D-mannose dehydratase. This enzyme converts GDP-mannose to GDP-4-dehydro-6-deoxy-D-mannose, the first of three steps for the conversion of GDP-mannose to GDP-fucose in animals, plants, and bacteria. In bacteria, GDP-L-fucose acts as a precursor of surface antigens such as the extracellular polysaccharide colanic acid of Escherichia coli. Excluded from this family are members of the clade that are poorly related because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase .; GO: 0008446 GDP-mannose 46-dehydratase activity, 0019673 GDP-mannose metabolic process, 0005622 intracellular.
Probab=97.82  E-value=0.00011  Score=48.30  Aligned_cols=225  Identities=17%  Similarity=0.023  Sum_probs=137.9

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEE-ECC-----HHHHHHHHHHHHCCCC--EEE-EECCCCCHHHHHHHHHH
Q ss_conf             78999388988525899999999899889999-489-----7899999999851596--499-98779999999999999
Q gi|254780462|r    8 KRGLIMGVANDHSIAWGIAKVLHSAGAQLAFS-YQG-----ESIGKRLKPLALTVDS--DFM-IPCNVEDPSSMDLLFER   78 (267)
Q Consensus         8 K~~lItGas~~~GIG~aia~~l~~~Ga~V~i~-~~~-----~~~~~~~~~l~~~~~~--~~~-~~~Dv~~~~~v~~~~~~   78 (267)
T Consensus         1 k~ALiTGiTGQ--DGSYLAE~LL~~GYeVHG~~RRSSSfNT~Ri~hiY~~~h~~~~r~A~~fLHYGDlTDs~~L~~~i~~   78 (365)
T TIGR01472         1 KVALITGITGQ--DGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHKEEKRRALMFLHYGDLTDSSNLVKLIDE   78 (365)
T ss_pred             CEEEEECCCCC--CHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf             93688345557--6789999987269687645862554252245676405354101661354204421068999999740


Q ss_pred             HHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCC--CCCCCEEEEE---EE-EEE---
Q ss_conf             99983798899936833177655576125799999776501661123222100222--4468416898---87-520---
Q gi|254780462|r   79 IKERWETLDFVVHSIAFSDKNELRGPYYNTSRDNFIQTMLVSCFSFTEIVRRAAQL--MPHGGAMITL---TY-GGS---  149 (267)
Q Consensus        79 ~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~e~~~~~~~vn~~~~~~~~~~~~~~--~~~~G~II~i---sS-~~~---  149 (267)
T Consensus        79 ~-----kP~EiYNLAAQSH--------V~VSFe~PeYTa~~~g~GTLrlLEA~r~hni~gl~~~~rFYQAStSElYG~v~  145 (365)
T TIGR01472        79 I-----KPTEIYNLAAQSH--------VKVSFEIPEYTADVDGIGTLRLLEAVRSHNILGLIKEIRFYQASTSELYGEVQ  145 (365)
T ss_pred             C-----CCCEEECCCCCCC--------EEEECCCCCCHHCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHCCCCC
T ss_conf             4-----8863420202371--------03541652000012443177899987423341412030255245231136555


Q ss_pred             ------CCCCCCCCCCHHHHHHHHHHHHHHHHHH---HHHCCEEEEECCCCCCCHHHHCCCCCHH-HH-----HHHHHCC
Q ss_conf             ------1456432100000156776314779984---2108589756228726855750798479-99-----9998268
Q gi|254780462|r  150 ------MRVVPNYNAMAPAKSALESSTKYLACDY---GGMNIRINAISAGPVRTLAGASISNGRD-IA-----AWSKENS  214 (267)
Q Consensus       150 ------~~~~~~~~~Y~asKaal~~ltr~lA~El---~~~gIrVNaIaPG~i~T~~~~~~~~~~~-~~-----~~~~~~~  214 (267)
T Consensus       146 ~~PQ~E~TPF~PRSPYAaAK~yA~w~tvNYREAYgL~A~nGILFNHESP~RGetFVTRKITra~a~I~~G~~~~lyLGNL  225 (365)
T TIGR01472       146 EIPQNETTPFYPRSPYAAAKLYAYWITVNYREAYGLFAVNGILFNHESPRRGETFVTRKITRAAAKIKLGLQEKLYLGNL  225 (365)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHEEEEECCCCCCHHCCEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf             78888888768887689998845431021210034100035210467887788532258999999986156311120275


Q ss_pred             -CCCCCCCHHHHHHHHHHHHC-HHH-CCC--CCCEEEE
Q ss_conf             -89987669999999998619-887-887--8868998
Q gi|254780462|r  215 -PLKRTVSLEDIGNSALYLLS-YLS-NGV--TGEIHYV  247 (267)
Q Consensus       215 -Pl~r~~~~edva~~v~fL~S-d~s-~~i--TGq~l~V  247 (267)
T Consensus       226 dA~RDWGhAkDYV~aMWLMLQ~d~P~DYViATG~t~SV  263 (365)
T TIGR01472       226 DAKRDWGHAKDYVEAMWLMLQQDKPDDYVIATGETHSV  263 (365)
T ss_pred             CCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCEEEH
T ss_conf             44106650566999988752786889768875733338