HHsearch alignment for GI: 254780462 and conserved domain: TIGR01832
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase; InterPro: IPR011286 This entry describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (IPR002198 from INTERPRO). This protein has been characterised in Erwinia chrysanthemi as an enzyme of pectin degradation .; GO: 0008678 2-deoxy-D-gluconate 3-dehydrogenase activity, 0051287 NAD binding.
Probab=100.00 E-value=0 Score=399.90 Aligned_cols=242 Identities=23% Similarity=0.267 Sum_probs=223.3
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHC
Q ss_conf 68878999388988525899999999899889999489789999999985159649998779999999999999999837
Q gi|254780462|r 5 LKGKRGLIMGVANDHSIAWGIAKVLHSAGAQLAFSYQGESIGKRLKPLALTVDSDFMIPCNVEDPSSMDLLFERIKERWE 84 (267)
Q Consensus 5 L~gK~~lItGas~~~GIG~aia~~l~~~Ga~V~i~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 84 (267)
T Consensus 3 L~GK~alvTGa~--tGlGQG~a~gLA~AGadi~g~~~~~~~~ET~~~v~~~Gr~f~~~~~Dl~~~~~~~~~~~~~~~~~g 80 (249)
T TIGR01832 3 LEGKVALVTGAN--TGLGQGIAVGLAEAGADIVGVGHISEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFG 80 (249)
T ss_pred CCCCEEEEECCC--CCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCEEHHHHHHHCHHHHHHHHHHHHHHHC
T ss_conf 787768882598--873689999998577417851431263888999998252100021212232137899999998618
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCC-CCC--CEEEEEEEEEECCCCCCCCCCHH
Q ss_conf 988999368331776555761257999997765016611232221002224-468--41689887520145643210000
Q gi|254780462|r 85 TLDFVVHSIAFSDKNELRGPYYNTSRDNFIQTMLVSCFSFTEIVRRAAQLM-PHG--GAMITLTYGGSMRVVPNYNAMAP 161 (267)
Q Consensus 85 ~iD~lVnnAg~~~~~~~~~~~~~~~~e~~~~~~~vn~~~~~~~~~~~~~~~-~~~--G~II~isS~~~~~~~~~~~~Y~a 161 (267)
T Consensus 81 ~~DiLVNNAGIIrR----~da~~f~e~dWd~V~nvNlk~vF~l~q~~a~~~l~~G~~GkiiNIAS~LSFQGGirVPsYTA 156 (249)
T TIGR01832 81 KIDILVNNAGIIRR----EDAVEFSEKDWDDVMNVNLKSVFFLTQAAAKQFLKQGRGGKIINIASLLSFQGGIRVPSYTA 156 (249)
T ss_pred CCCEEEECCCHHHH----HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHCCCCCCHHHHH
T ss_conf 86567607422104----57751561445799986689999999999999996489950575142344226755124666
Q ss_pred HHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCHHHCCCC
Q ss_conf 01567763147799842108589756228726855750798479999998268899876699999999986198878878
Q gi|254780462|r 162 AKSALESSTKYLACDYGGMNIRINAISAGPVRTLAGASISNGRDIAAWSKENSPLKRTVSLEDIGNSALYLLSYLSNGVT 241 (267)
Q Consensus 162 sKaal~~ltr~lA~El~~~gIrVNaIaPG~i~T~~~~~~~~~~~~~~~~~~~~Pl~r~~~~edva~~v~fL~Sd~s~~iT 241 (267)
T Consensus 157 SK~~v~GlTk~lAnEWa~~ginVNAIAPGY~~T~NT~~lRaD~~Rn~~Il~RIPaGrWG~p~D~~G~aVFLaS~ASdYv~ 236 (249)
T TIGR01832 157 SKHGVAGLTKLLANEWAAKGINVNAIAPGYMETNNTQALRADEDRNAAILERIPAGRWGTPEDLGGAAVFLASSASDYVN 236 (249)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 67777778999998998738815311588766455154203177789997317899984840003068888775543436
Q ss_pred CCEEEECCCCC
Q ss_conf 86899868844
Q gi|254780462|r 242 GEIHYVDCGYN 252 (267)
Q Consensus 242 Gq~l~VDGG~s 252 (267)
T Consensus 237 G~~l~VDGGWL 247 (249)
T TIGR01832 237 GAILAVDGGWL 247 (249)
T ss_pred CEEEEECCCCC
T ss_conf 50662077313