HHsearch alignment for GI: 254780462 and conserved domain: TIGR02813
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA; InterPro: IPR004432 Members of this entry represent PfaA, which is involved in omega-3 polyunsaturated fatty acid biosynthesis, for example PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is found together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologues of PfaA, also included in this entry, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis; an alternative to the more familiar iterated mechanism of chain extension and desaturation, and like PfaA the more distant homologues are likewise found near genes for homologues of PfaB, PfaC, and/or PfaD..
Probab=96.76 E-value=0.032 Score=33.30 Aligned_cols=176 Identities=14% Similarity=0.113 Sum_probs=113.7
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 87899938898852589999999989988999948978999999998515964999877999999999999999983798
Q gi|254780462|r 7 GKRGLIMGVANDHSIAWGIAKVLHSAGAQLAFSYQGESIGKRLKPLALTVDSDFMIPCNVEDPSSMDLLFERIKERWETL 86 (267)
Q Consensus 7 gK~~lItGas~~~GIG~aia~~l~~~Ga~V~i~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 86 (267)
T Consensus 1901 ~~~~~Vi~--Ddg~~A~~la~~L~~~G~~Va~v~s~~~v~~s~~~l~s~i---~~~~l~~~D~~~~~~~i~dI~~~~~~~ 1975 (2773)
T TIGR02813 1901 KEAAVVID--DDGHNAGVLAEKLIAAGLQVAVVRSPKVVVSSASPLDSEI---ASVTLEAIDDESIEAVIKDIEEKTAQI 1975 (2773)
T ss_pred CCCEEEEE--CCCCHHHHHHHHHHHCCCEEEEECCCCEEECCCCHHHCCE---EEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 35358882--4885289999999868958999738832220001000120---025401120268999999999855443
Q ss_pred CEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCC---CCCCEEEEEEEEEECCCCCCCCC-----
Q ss_conf 8999368331776555761257999997765016611232221002224---46841689887520145643210-----
Q gi|254780462|r 87 DFVVHSIAFSDKNELRGPYYNTSRDNFIQTMLVSCFSFTEIVRRAAQLM---PHGGAMITLTYGGSMRVVPNYNA----- 158 (267)
Q Consensus 87 D~lVnnAg~~~~~~~~~~~~~~~~e~~~~~~~vn~~~~~~~~~~~~~~~---~~~G~II~isS~~~~~~~~~~~~----- 158 (267)
T Consensus 1976 ~g~I~LQ~l~~~~~-ad~~~a~~l---~~~AK~s~~~AFl~AKl~~~~L~~~k~~~~Fv~Vsr~dGg~Gy~n~d~~~g~~ 2051 (2773)
T TIGR02813 1976 DGFIHLQPLATDAK-ADKVDAIEL---VEAAKESVELAFLFAKLLKVKLAENKDRASFVTVSRIDGGFGYLNADEDVGAL 2051 (2773)
T ss_pred CEEEEECCCCHHHC-CCCHHHEEH---HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHH
T ss_conf 23556301010000-230021101---78887889999999997567876430440067897316742335540123356
Q ss_pred -------CHHHHHHHHHHHHHHHHHHHH-HC---CEEEEECCCC
Q ss_conf -------000015677631477998421-08---5897562287
Q gi|254780462|r 159 -------MAPAKSALESSTKYLACDYGG-MN---IRINAISAGP 191 (267)
Q Consensus 159 -------Y~asKaal~~ltr~lA~El~~-~g---IrVNaIaPG~ 191 (267)
T Consensus 2052 ~~kanv~a~L~QAaL~GL~KTl~HEW~~gegsV~CR~lD~a~~L 2095 (2773)
T TIGR02813 2052 IVKANVKAELNQAALAGLTKTLNHEWNAGEGSVFCRALDVAPKL 2095 (2773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCH
T ss_conf 66666677777877631233203443688832788755347512