HHsearch alignment for GI: 254780462 and conserved domain: TIGR03466
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=99.55 E-value=1.2e-12 Score=96.88 Aligned_cols=211 Identities=12% Similarity=0.125 Sum_probs=138.1
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 78999388988525899999999899889999489789999999985159649998779999999999999999837988
Q gi|254780462|r 8 KRGLIMGVANDHSIAWGIAKVLHSAGAQLAFSYQGESIGKRLKPLALTVDSDFMIPCNVEDPSSMDLLFERIKERWETLD 87 (267)
Q Consensus 8 K~~lItGas~~~GIG~aia~~l~~~Ga~V~i~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 87 (267)
T Consensus 1 MriLVTGgtGf--iG~~l~~~L~~~G~~V~~l~r~~~~~~~~~---~--~~~~~~~gDl~d~~~~~~~~~-------~~d 66 (328)
T TIGR03466 1 MKVLVTGATGF--VGSAVVRLLLERGEEVRVLVRPTSDRRNLE---G--LDVEIVEGDLRDPASLRKALA-------GCR 66 (328)
T ss_pred CEEEEECCCCH--HHHHHHHHHHHCCCEEEEEECCCCCHHHHC---C--CCCEEEEEECCCHHHHHHHHH-------CCC
T ss_conf 94999867779--999999999978498999989998655652---1--797799820799999999971-------785
Q ss_pred EEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEEEEEECCCC-------------C
Q ss_conf 999368331776555761257999997765016611232221002224468416898875201456-------------4
Q gi|254780462|r 88 FVVHSIAFSDKNELRGPYYNTSRDNFIQTMLVSCFSFTEIVRRAAQLMPHGGAMITLTYGGSMRVV-------------P 154 (267)
Q Consensus 88 ~lVnnAg~~~~~~~~~~~~~~~~e~~~~~~~vn~~~~~~~~~~~~~~~~~~G~II~isS~~~~~~~-------------~ 154 (267)
T Consensus 67 ~ViH~Aa~~~-------~~~~~~~---~~~~~Nv~gt~nll~aa~~~~--v~r~V~~SS~~v~g~~~~~~~~~E~~p~~~ 134 (328)
T TIGR03466 67 ALFHVAADYR-------LWAPDPE---EMYRANVEGTRNLLRAALEAG--VERVVYTSSVATLGVPGDGTPADETTPSSL 134 (328)
T ss_pred EEEEECCCCC-------CCCCCHH---HHHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 8976134234-------4679989---999999999999999999729--874315633578557888874025676545
Q ss_pred C--CCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHCCCCCHHH-HHHHHHCCCC-----CCCCCHHHHH
Q ss_conf 3--210000015677631477998421085897562287268557507984799-9999826889-----9876699999
Q gi|254780462|r 155 N--YNAMAPAKSALESSTKYLACDYGGMNIRINAISAGPVRTLAGASISNGRDI-AAWSKENSPL-----KRTVSLEDIG 226 (267)
Q Consensus 155 ~--~~~Y~asKaal~~ltr~lA~El~~~gIrVNaIaPG~i~T~~~~~~~~~~~~-~~~~~~~~Pl-----~r~~~~edva 226 (267)
T Consensus 135 ~~~~~~Y~~sK~~aE~~~~~~~~~~---gl~~~ilRp~~v~Gp~d~~~~~~~~~i~~~~~~~~p~~~~~g~~~v~V~Dva 211 (328)
T TIGR03466 135 EKMIGHYKRSKFLAEEAALRMIAEK---GLPVVIVNPSTPIGPRDIKPTPTGRIIVDFLRGKMPAYVDTGLNLVHVDDVA 211 (328)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHC---CCCEEEECCCCEECCCCCCCCCHHHHHHHHHCCCCCEEECCCCEEEEEHHHH
T ss_conf 6665778899999999999999972---9975997778568899888876699999997599976755871899838999
Q ss_pred HHHHHHHCHHHCCCCCCEEEECCC
Q ss_conf 999986198878878868998688
Q gi|254780462|r 227 NSALYLLSYLSNGVTGEIHYVDCG 250 (267)
Q Consensus 227 ~~v~fL~Sd~s~~iTGq~l~VDGG 250 (267)
T Consensus 212 ~a~~~a~~---~~~~g~~y~~~~~ 232 (328)
T TIGR03466 212 EGHLLALE---RGRIGERYILGGE 232 (328)
T ss_pred HHHHHHHH---CCCCCCEEEECCC
T ss_conf 99999975---7998987997999