HHsearch alignment for GI: 254780462 and conserved domain: TIGR03589
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=99.69 E-value=3.1e-15 Score=112.63 Aligned_cols=214 Identities=16% Similarity=0.142 Sum_probs=147.7
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 568878999388988525899999999899--889999489789999999985159649998779999999999999999
Q gi|254780462|r 4 ILKGKRGLIMGVANDHSIAWGIAKVLHSAG--AQLAFSYQGESIGKRLKPLALTVDSDFMIPCNVEDPSSMDLLFERIKE 81 (267)
Q Consensus 4 ~L~gK~~lItGas~~~GIG~aia~~l~~~G--a~V~i~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 81 (267)
T Consensus 1 ~~~~K~ILVTGGaGf--IGS~lv~~Ll~~~~~~~iii~~~de~~~~~l~~~~-~~~~i~f~~gDIrD~~~l~~~~~---- 73 (324)
T TIGR03589 1 MFNNKSILITGGTGS--FGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKF-PAPCLRFFIGDVRDKERLTRALR---- 73 (324)
T ss_pred CCCCCEEEEECCCCH--HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHC-CCCCEEEEECCCCCHHHHHHHHC----
T ss_conf 999399999079779--99999999997299828999668640328898516-89875999677778899997634----
Q ss_pred HHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCCCHH
Q ss_conf 83798899936833177655576125799999776501661123222100222446841689887520145643210000
Q gi|254780462|r 82 RWETLDFVVHSIAFSDKNELRGPYYNTSRDNFIQTMLVSCFSFTEIVRRAAQLMPHGGAMITLTYGGSMRVVPNYNAMAP 161 (267)
Q Consensus 82 ~~g~iD~lVnnAg~~~~~~~~~~~~~~~~e~~~~~~~vn~~~~~~~~~~~~~~~~~~G~II~isS~~~~~~~~~~~~Y~a 161 (267)
T Consensus 74 ---~vD~VfHaAA~khV-----p---~se~nP~e~i~tNV~Gt~nlleaa~~~~V--kk~V~iSTDka~~P~---n~yGa 137 (324)
T TIGR03589 74 ---GVDYVVHAAALKQV-----P---AAEYNPFECIRTNINGAQNVIDAAIDNGV--KRVVALSTDKAANPI---NLYGA 137 (324)
T ss_pred ---CCCEEEECCCCCCC-----C---HHHHCHHHHHHHHHHHHHHHHHHHHHCCC--CEEEEECCCCCCCCC---CCCCC
T ss_conf ---88899994627767-----2---67769899999997999999999885554--317862268888996---74312
Q ss_pred HHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHCCCCCHHHHHHHHHC-CCC--------CCCCCHHHHHHHHHHH
Q ss_conf 0156776314779984210858975622872685575079847999999826-889--------9876699999999986
Q gi|254780462|r 162 AKSALESSTKYLACDYGGMNIRINAISAGPVRTLAGASISNGRDIAAWSKEN-SPL--------KRTVSLEDIGNSALYL 232 (267)
Q Consensus 162 sKaal~~ltr~lA~El~~~gIrVNaIaPG~i~T~~~~~~~~~~~~~~~~~~~-~Pl--------~r~~~~edva~~v~fL 232 (267)
T Consensus 138 sK~~~E~l~~~~~~~~~~~~~~~~~vRygNV~gsrgSVi---P~F~~qi~~g~~~~~itd~~mtRf~mtv~dav~lV~~a 214 (324)
T TIGR03589 138 TKLASDKLFVAANNISGSKGTRFSVVRYGNVVGSRGSVV---PFFKSLKEEGVTELPITDPRMTRFWITLEQGVNFVLKS 214 (324)
T ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCH---HHHHHHHHCCCCCCCCCCCCEEEEEEEHHHHHHHHHHH
T ss_conf 367679999999985078886378863327518886639---99999998399974449998079988899999999999
Q ss_pred HCHHHCCCCCCEEE
Q ss_conf 19887887886899
Q gi|254780462|r 233 LSYLSNGVTGEIHY 246 (267)
Q Consensus 233 ~Sd~s~~iTGq~l~ 246 (267)
T Consensus 215 ~~---~~~~GEifv 225 (324)
T TIGR03589 215 LE---RMLGGEIFV 225 (324)
T ss_pred HH---HCCCCEEEE
T ss_conf 98---288984998