HHsearch alignment for GI: 254780462 and conserved domain: cd01065
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.28 E-value=0.0036 Score=39.10 Aligned_cols=73 Identities=23% Similarity=0.279 Sum_probs=48.4
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEECCHHHHHHH-HHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 688789993889885258999999998998-899994897899999-999851596499987799999999999999998
Q gi|254780462|r 5 LKGKRGLIMGVANDHSIAWGIAKVLHSAGA-QLAFSYQGESIGKRL-KPLALTVDSDFMIPCNVEDPSSMDLLFERIKER 82 (267)
Q Consensus 5 L~gK~~lItGas~~~GIG~aia~~l~~~Ga-~V~i~~~~~~~~~~~-~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (267)
T Consensus 17 ~~~k~vlIlGaG---Gaarai~~aL~~~g~~~I~i~nR~~~r~~~l~~~~~~~~~-----~~~~~~~----------~~~ 78 (155)
T cd01065 17 LKGKKVLILGAG---GAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGI-----AIAYLDL----------EEL 78 (155)
T ss_pred CCCCEEEEECCC---HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCC-----CEEECCH----------HHH
T ss_conf 579999998675---8999999999971998228860899999999998501366-----4010453----------443
Q ss_pred HCCCCEEEECCCC
Q ss_conf 3798899936833
Q gi|254780462|r 83 WETLDFVVHSIAF 95 (267)
Q Consensus 83 ~g~iD~lVnnAg~ 95 (267)
T Consensus 79 ~~~~dliIN~tp~ 91 (155)
T cd01065 79 LAEADLIINTTPV 91 (155)
T ss_pred HCCCCEEEECCCC
T ss_conf 1568879876778