HHsearch alignment for GI: 254780462 and conserved domain: cd01065

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.28  E-value=0.0036  Score=39.10  Aligned_cols=73  Identities=23%  Similarity=0.279  Sum_probs=48.4

Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEECCHHHHHHH-HHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             688789993889885258999999998998-899994897899999-999851596499987799999999999999998
Q gi|254780462|r    5 LKGKRGLIMGVANDHSIAWGIAKVLHSAGA-QLAFSYQGESIGKRL-KPLALTVDSDFMIPCNVEDPSSMDLLFERIKER   82 (267)
Q Consensus         5 L~gK~~lItGas~~~GIG~aia~~l~~~Ga-~V~i~~~~~~~~~~~-~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   82 (267)
T Consensus        17 ~~~k~vlIlGaG---Gaarai~~aL~~~g~~~I~i~nR~~~r~~~l~~~~~~~~~-----~~~~~~~----------~~~   78 (155)
T cd01065          17 LKGKKVLILGAG---GAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGI-----AIAYLDL----------EEL   78 (155)
T ss_pred             CCCCEEEEECCC---HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCC-----CEEECCH----------HHH
T ss_conf             579999998675---8999999999971998228860899999999998501366-----4010453----------443


Q ss_pred             HCCCCEEEECCCC
Q ss_conf             3798899936833
Q gi|254780462|r   83 WETLDFVVHSIAF   95 (267)
Q Consensus        83 ~g~iD~lVnnAg~   95 (267)
T Consensus        79 ~~~~dliIN~tp~   91 (155)
T cd01065          79 LAEADLIINTTPV   91 (155)
T ss_pred             HCCCCEEEECCCC
T ss_conf             1568879876778