HHsearch alignment for GI: 254780462 and conserved domain: pfam01488
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=97.41 E-value=0.0014 Score=41.68 Aligned_cols=77 Identities=25% Similarity=0.292 Sum_probs=51.3
Q ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 75688789993889885258999999998998-89999489789999999985159649998779999999999999999
Q gi|254780462|r 3 NILKGKRGLIMGVANDHSIAWGIAKVLHSAGA-QLAFSYQGESIGKRLKPLALTVDSDFMIPCNVEDPSSMDLLFERIKE 81 (267)
Q Consensus 3 ~~L~gK~~lItGas~~~GIG~aia~~l~~~Ga-~V~i~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 81 (267)
T Consensus 8 ~~l~~~~vlVIGa-G--~~~~~~~~~L~~~g~~~i~v~nRt~~ka~---~la~~~~~~~~~~~~~---~~l~-------~ 71 (134)
T pfam01488 8 GDLKGKKVLLIGA-G--EMARLAAKHLLSKGAKKITIANRTLEKAK---ELAEEFGGEEVEALPL---DELE-------E 71 (134)
T ss_pred CCCCCCEEEEECC-C--HHHHHHHHHHHHCCCCEEEEECCCHHHHH---HHHHHCCCCCEEEEEC---HHHH-------H
T ss_conf 8814898999996-0--99999999999759988999547578999---9999849972589851---3544-------1
Q ss_pred HHCCCCEEEECCCC
Q ss_conf 83798899936833
Q gi|254780462|r 82 RWETLDFVVHSIAF 95 (267)
Q Consensus 82 ~~g~iD~lVnnAg~ 95 (267)
T Consensus 72 ~l~~~DivI~aT~s 85 (134)
T pfam01488 72 LLAEADIVISATSA 85 (134)
T ss_pred HHHHCCEEEEECCC
T ss_conf 36319999992599