BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780462|ref|YP_003064875.1| enoyl-(acyl carrier protein)
reductase [Candidatus Liberibacter asiaticus str. psy62]
(267 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780462|ref|YP_003064875.1| enoyl-(acyl carrier protein) reductase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 267
Score = 554 bits (1428), Expect = e-160, Method: Compositional matrix adjust.
Identities = 267/267 (100%), Positives = 267/267 (100%)
Query: 1 MINILKGKRGLIMGVANDHSIAWGIAKVLHSAGAQLAFSYQGESIGKRLKPLALTVDSDF 60
MINILKGKRGLIMGVANDHSIAWGIAKVLHSAGAQLAFSYQGESIGKRLKPLALTVDSDF
Sbjct: 1 MINILKGKRGLIMGVANDHSIAWGIAKVLHSAGAQLAFSYQGESIGKRLKPLALTVDSDF 60
Query: 61 MIPCNVEDPSSMDLLFERIKERWETLDFVVHSIAFSDKNELRGPYYNTSRDNFIQTMLVS 120
MIPCNVEDPSSMDLLFERIKERWETLDFVVHSIAFSDKNELRGPYYNTSRDNFIQTMLVS
Sbjct: 61 MIPCNVEDPSSMDLLFERIKERWETLDFVVHSIAFSDKNELRGPYYNTSRDNFIQTMLVS 120
Query: 121 CFSFTEIVRRAAQLMPHGGAMITLTYGGSMRVVPNYNAMAPAKSALESSTKYLACDYGGM 180
CFSFTEIVRRAAQLMPHGGAMITLTYGGSMRVVPNYNAMAPAKSALESSTKYLACDYGGM
Sbjct: 121 CFSFTEIVRRAAQLMPHGGAMITLTYGGSMRVVPNYNAMAPAKSALESSTKYLACDYGGM 180
Query: 181 NIRINAISAGPVRTLAGASISNGRDIAAWSKENSPLKRTVSLEDIGNSALYLLSYLSNGV 240
NIRINAISAGPVRTLAGASISNGRDIAAWSKENSPLKRTVSLEDIGNSALYLLSYLSNGV
Sbjct: 181 NIRINAISAGPVRTLAGASISNGRDIAAWSKENSPLKRTVSLEDIGNSALYLLSYLSNGV 240
Query: 241 TGEIHYVDCGYNIVAMPSYNKNKVIEN 267
TGEIHYVDCGYNIVAMPSYNKNKVIEN
Sbjct: 241 TGEIHYVDCGYNIVAMPSYNKNKVIEN 267
>gi|254781166|ref|YP_003065579.1| enoyl-(acyl carrier protein) reductase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 284
Score = 278 bits (711), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 131/257 (50%), Positives = 191/257 (74%), Gaps = 1/257 (0%)
Query: 3 NILKGKRGLIMGVANDHSIAWGIAKVLHSAGAQLAFSYQGESIGKRLKPLALTVDSDFMI 62
N++K KRG+++GVAN+ S+AW IAK+ H+AGA++A ++QG++ KR++ L +D
Sbjct: 6 NLMKDKRGIVLGVANNRSLAWSIAKMCHAAGAKVALTWQGDATKKRIEGLVEGMDFFMAG 65
Query: 63 PCNVEDPSSMDLLFERIKERWETLDFVVHSIAFSDKNELRGPYYNTSRDNFIQTMLVSCF 122
CNV + ++D +F +++ W T+DF+VH+IAFSDK EL GPY NT+R+NF+ TM VS +
Sbjct: 66 HCNVSNSETIDDVFRNLEKEWGTIDFLVHAIAFSDKAELTGPYINTTRENFLNTMDVSVY 125
Query: 123 SFTEIVRRAAQLMPHGGAMITLTYGGSMRVVPNYNAMAPAKSALESSTKYLACDYGGMN- 181
SFT + RA+ LM GG+M+TLTY G+ +V+P+YN M PAK+AL+S+ +YLA D G +
Sbjct: 126 SFTALAARASSLMNKGGSMLTLTYLGADKVMPHYNCMGPAKAALQSAVRYLAMDLGRQSG 185
Query: 182 IRINAISAGPVRTLAGASISNGRDIAAWSKENSPLKRTVSLEDIGNSALYLLSYLSNGVT 241
IR+NA+SAGP +TLA + IS+ R I W++ NSPL R ++ +++ SALYLLS S+GVT
Sbjct: 186 IRVNALSAGPAKTLASSGISDFRYILKWNEYNSPLGRNITHDEVAKSALYLLSDFSSGVT 245
Query: 242 GEIHYVDCGYNIVAMPS 258
GE HYVD GY+IV M +
Sbjct: 246 GECHYVDAGYHIVGMKA 262
>gi|254780535|ref|YP_003064948.1| 3-ketoacyl-(acyl-carrier-protein) reductase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 247
Score = 67.4 bits (163), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 121/260 (46%), Gaps = 26/260 (10%)
Query: 5 LKGKRGLIMGVANDHSIAWGIAKVLHSAGAQLAFSYQGESIGKRLKPLALTVDSDFMIPC 64
L GK+ L+ G + SI IAK+L+ GA + + +++ VD + P
Sbjct: 4 LTGKKALVTGASG--SIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPA 61
Query: 65 NVEDPSSMDLLFERIKERWETLDFVVHSIAF-SDKNELRGPYYNTSRDNFIQTMLVSCFS 123
N D S++ L +R+ E +D +V++ D +R Y + D+ + L S F
Sbjct: 62 NFSDRVSVEYLSKRVNEEMGGVDILVNNAGIVRDSLFMRARYEDW--DDVLSVNLTSAFL 119
Query: 124 FTEIVRRAAQLMP-----HGGAMITLT----YGGSMRVVPNYNAMAPAKSALESSTKYLA 174
T QL+P G +I +T + G+ V NY A AKS L TK LA
Sbjct: 120 LTR------QLVPLMIRNRFGRVINITSVVGFTGNAGQV-NYCA---AKSGLTGFTKALA 169
Query: 175 CDYGGMNIRINAISAGPVRTLAGASISNGRDIAAWSKENSPLKRTVSLEDIGNSALYLLS 234
+ G N+ +N ++ G + + +++ D + P+KR +++DI + LYL S
Sbjct: 170 QETGRRNVTVNCVAPGFIGSDMTVNLT--EDQKGKIISSIPMKRMGAVDDIAAAVLYLSS 227
Query: 235 YLSNGVTGEIHYVDCGYNIV 254
++ VTG+ +V+ G ++
Sbjct: 228 LEASYVTGQTIHVNGGMAMI 247
>gi|254780337|ref|YP_003064750.1| oxidoreductase protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 257
Score = 39.7 bits (91), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/156 (20%), Positives = 68/156 (43%), Gaps = 8/156 (5%)
Query: 41 QGESIGKRLKPLALTVDSDFMIPCNVEDPSSMDLLFERIKERWETLDFVVHSIAFSDKNE 100
Q E + L+ + +D + ++ D ++++L I +RW LD ++ +
Sbjct: 54 QLEKLKNALQKINKKID---IFAFDLRDSNALELTKTYIAKRWGKLDILIANAGILGS-- 108
Query: 101 LRGPYYNTSRDNFIQTMLVSCFSFTEIVRRAAQLMP--HGGAMITLTYGGSMRVVPNYNA 158
P + +F + V+ + I+R + H G I L+ G + + P + A
Sbjct: 109 -ISPIWQIKEKSFADVISVNVMANWNIMRSFDPWLKKSHCGRAIILSSGAAYKCRPLWGA 167
Query: 159 MAPAKSALESSTKYLACDYGGMNIRINAISAGPVRT 194
+ +K+A+E+ + + + +R+ I GP RT
Sbjct: 168 YSASKAAIEALARTWSKETVNTALRVINIDPGPTRT 203
>gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 348
Score = 23.9 bits (50), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 28 VLHSAGAQLAFSYQGESIGKRLKPLALTVDSDFMIPCNVEDPSSM 72
+LH A Y E I K L P+ V +D M C+++D S++
Sbjct: 258 ILHPANC-----YVSEFIQK-LNPITALVAADVMRVCSIDDESNI 296
>gi|254780268|ref|YP_003064681.1| acetyl-CoA carboxylase biotin carboxylase subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 443
Score = 22.7 bits (47), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 218 RTVSLEDIGNSALYLLSYLSN 238
R+ +L GN A+Y+ YL N
Sbjct: 183 RSEALAAFGNDAVYIEKYLEN 203
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.319 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 166,927
Number of Sequences: 1233
Number of extensions: 6483
Number of successful extensions: 20
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 10
length of query: 267
length of database: 328,796
effective HSP length: 72
effective length of query: 195
effective length of database: 240,020
effective search space: 46803900
effective search space used: 46803900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 37 (18.9 bits)