Query gi|254780463|ref|YP_003064876.1| putative peptidoglycan binding protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 673
No_of_seqs 421 out of 777
Neff 12.3
Searched_HMMs 39220
Date Sun May 29 18:34:39 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780463.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0161 consensus 98.7 2.4E-05 6.2E-10 51.3 94.2 23 4-26 847-869 (1930)
2 pfam01576 Myosin_tail_1 Myosin 97.9 0.0015 3.8E-08 38.8 94.9 654 2-663 4-663 (859)
3 pfam10174 Cast RIM-binding pro 97.8 0.0022 5.7E-08 37.5 92.8 98 570-667 659-756 (774)
4 KOG4674 consensus 96.3 0.05 1.3E-06 28.1 86.7 655 6-673 200-893 (1822)
5 TIGR02169 SMC_prok_A chromosom 95.6 0.1 2.6E-06 25.9 83.6 26 1-26 185-210 (1202)
6 pfam05622 HOOK HOOK protein. T 93.6 0.29 7.5E-06 22.7 53.5 21 602-622 622-642 (713)
7 KOG0976 consensus 90.7 0.63 1.6E-05 20.4 59.0 32 17-48 40-71 (1265)
8 KOG0971 consensus 88.5 0.92 2.4E-05 19.2 39.8 50 576-625 1000-1049(1243)
9 pfam05483 SCP-1 Synaptonemal c 76.8 2.6 6.7E-05 16.0 80.3 16 600-615 744-759 (787)
10 COG1196 Smc Chromosome segrega 33.3 14 0.00037 10.8 88.9 22 2-23 165-186 (1163)
11 KOG4643 consensus 33.1 15 0.00037 10.8 67.3 36 221-256 298-333 (1195)
12 pfam05667 DUF812 Protein of un 29.0 17 0.00043 10.3 33.6 30 592-621 451-480 (536)
13 pfam07888 CALCOCO1 Calcium bin 28.9 17 0.00043 10.3 41.9 40 575-614 418-457 (546)
14 TIGR02168 SMC_prok_B chromosom 28.0 18 0.00045 10.2 92.2 21 2-22 168-188 (1191)
15 KOG0230 consensus 21.6 19 0.0005 9.9 -0.7 10 663-672 1439-1448(1598)
16 TIGR01838 PHA_synth_I poly(R)- 20.9 28 0.0007 8.8 2.2 36 636-671 86-121 (541)
No 1
>KOG0161 consensus
Probab=98.70 E-value=2.4e-05 Score=51.31 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=12.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 05689999999999999999988
Q gi|254780463|r 4 LTPLKDHSSCAVSKKSELENPSG 26 (673)
Q Consensus 4 ~~~L~~~~~~~~~k~~ele~~~~ 26 (673)
+..|++..........+++....
T Consensus 847 ~~~l~~~l~~~e~~~~ele~~~~ 869 (1930)
T KOG0161 847 IQKLKEELQKSESKRKELEEKLV 869 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999998988889999999
No 2
>pfam01576 Myosin_tail_1 Myosin tail. The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Probab=97.88 E-value=0.0015 Score=38.76 Aligned_cols=654 Identities=9% Similarity=0.023 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87056899999999999999999888899999999999999999999999999999999999999999999999999999
Q gi|254780463|r 2 SGLTPLKDHSSCAVSKKSELENPSGMTDIHRIKNWIQKVIGEEKNKPLSQEQKEKIKILWSSLRKIAGSNEEVSDPNLNS 81 (673)
Q Consensus 2 ~~~~~L~~~~~~~~~k~~ele~~~~~~~~~~~k~~~~~~~~ee~~~~l~~~~~e~~~~l~~~~~~~~~~~~~l~~~~~~~ 81 (673)
+....|.......-.....+.....-.......-.-.....+.....+...+..........-........++......+
T Consensus 4 ~~~~~l~~~l~kke~el~~l~~~le~eq~~~~~l~k~~~ele~~i~eL~e~le~e~~~~~~~e~~~~~l~~el~~l~~~l 83 (859)
T pfam01576 4 RQKRELENQLYRKESELSQLSSKLEDEQALVAQLQKKIKELEARIRELEEELEAERAARAKAEKARADLSRELEELSERL 83 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 58999999999889999999988999999999999999999999999999999999999988988999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999999999999999999999-999999999999999999999999999999
Q gi|254780463|r 82 PIQREDDCNVVRTNDDTKQIFNLLRKKLSNPHLQQHIESKTEQNGGIDP-NLQSESLPTIPGTAIREDDDIDIFHSDMAK 160 (673)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (673)
....................+......+.............+....... ......+................+...+..
T Consensus 84 e~~~~~~~~~~e~~~~~e~el~~l~~~Lee~~~~~e~~~~~l~~~~~~~~~el~~q~e~l~~~~~~lek~~~~l~~e~~~ 163 (859)
T pfam01576 84 EEAGGATAAQIELNKKREAELAKLRKDLEEANLQHEEALATLRKKHQDAINELSEQIEQLQKQKAKAEKEKSQLQAEVDD 163 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98873799999999999999999999999999867889999998778899999999999999998899999999999999
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999998888899--99999999999999998888753123348999999998642124479999999999999999
Q gi|254780463|r 161 LSKSITELCRIISIPG--IKKSHSQLEKILSKMENIAKECSLQSVENNWKGALQHFKKLDFKNLHEKINTLSCQMNVMQC 238 (673)
Q Consensus 161 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (673)
+...+........... ..........+...+................+.................+..+......+..
T Consensus 164 l~~~l~~~~~~k~~~e~~~~~le~~l~el~~k~~e~~~~~~el~~~~~~l~~e~~~l~~~lee~e~~~~~l~~~~~~l~~ 243 (859)
T pfam01576 164 LLAQLDQIAKAKLNAEKKAKQLESQLSELQVKLDELQRQLNDLTSQKSRLQSENSDLTRQLEEAEAQVSNLSKLKSQLES 243 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99778887777987788899999889999999998887788899899888988999998777789999998888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998988999999999999999999999999999999999999987865567999999999886776786432114679
Q gi|254780463|r 239 TFDKNNNGFAASGIDEKLVSIVNSTHNLLSLLKLLNEKISTKGVLSFDTKLSEIKTAVEKNRKYAQSYTQKFVEKFEKHL 318 (673)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (673)
.+..+...+.........+...+..+......+...+.........+...+......+......................
T Consensus 244 qlee~~~~lee~~~~~~~l~~~l~~le~e~~~l~~~lee~~~~~~~le~~l~~~~~el~~~~~k~e~e~~~~~~e~Ee~~ 323 (859)
T pfam01576 244 QLEEAKRSLEEESRERANLQAQLRQLEHDLDSLREQLEEESEAKAELERQLSKANAEIQQWRSKFESEGALRAEELEELK 323 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999988899999999999999999999999999899999999999999998677899999989888887788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99985210025788765787886332334458888876877999888888642100068873100467887799999878
Q gi|254780463|r 319 ESIGAQVQDIHSDVREQQKPAKPRLDLIEKIGERLGNLESHVANIMLKLEERQNTSEDPAILRNLENQLLNIKDLVTNDL 398 (673)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (673)
..+...+..+.............+......+...+..+...+.........+......... ................
T Consensus 324 k~l~~~~~elee~~~~~~~~~~~le~~k~~L~~ele~l~~ele~~~~~~~~lek~~~~~~~---~~~e~~~~~~~l~~e~ 400 (859)
T pfam01576 324 KKLNQKISELEEAAEAANAKCDSLEKTKSRLQSELEDLQIELERANAAASELEKKQKNFDK---ILAEWKRKVDELQAEL 400 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_conf 9999999999999999998898899999999989999999999999899999999998887---8999986569999879
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77899999999999999999999888899999887644888999998755468999999852112248999999999999
Q gi|254780463|r 399 KDNRTLREPDQHVFGLEDYIVKTAHKTARSMLNSINKSQDIERILQKNMHEYCKEIQKVHAEQTIKNFTTLYDMLVKIFQ 478 (673)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (673)
....................+.........+......+......+...+......+..+... ...+......+..
T Consensus 401 ~~~~~e~~~~~~~l~~l~~~lee~~~~~~~l~~e~~~l~~el~~l~~~~~e~~~~~~ele~~-----~~~le~e~~el~~ 475 (859)
T pfam01576 401 DTAQREARNLSTELFRLKNELEELKDQVEALRRENKNLQDEIHDLTDQLGEGGRNVHELEKA-----RRRLEAEKDELQA 475 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
T ss_conf 99999999889999999978999999999999999999989988887788898789999999-----9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q ss_conf 9987126689999999999999999999999999999999999999999999999999999999999999---9999999
Q gi|254780463|r 479 KLGTLTEEGRRLPYSTSNDLSPNHQASHKYSELFKNLCSDNTPSVNQTRVESNTYNEQYPILSSNNSLDQ---HNHPHDI 555 (673)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 555 (673)
.+..+........................+........................................ .....+.
T Consensus 476 ~lee~e~~l~~~e~~~~~l~~el~~~~~e~e~~l~e~eee~e~~r~~~~~~~~~l~~~le~~~k~~~e~~~~~k~le~~~ 555 (859)
T pfam01576 476 ALEEAEAALELEESKVLRAQVELSQIRSEIERRLAEKEEEFENTRKNHQRAIESLQATLEAEAKGKAEASRLKKKLEGDI 555 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999999999999999999988658899999999999999998768889877889998899889789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98899999999999999999999999999999999999998998999999999999999999999999864300677899
Q gi|254780463|r 556 SETQGDSVYDQKKREKEFNSPHDIQHMLERVSLIQQGILEDDNTIPTYISAVRRATSTSTMRSNDLKEKNIGKKIWNFTK 635 (673)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~l~e~~~~~~~~~~~~ 635 (673)
.......................+...+..+.............+...+..+...+.........+...........-..
T Consensus 556 ~ele~~l~~~~~~~~e~~~~l~~~~~~~~elq~~~ee~~~~~~~~~~~~~~~e~~~~~l~~el~~l~~~le~~e~~~~~~ 635 (859)
T pfam01576 556 NELEIALDHANKANAEAQKNVKKYQQQVKELQTQVEEEQRAREDAREQLAVAERRATALEAELEELRSALEQAERARKQA 635 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998899987889999999999999899999769999998999998999999999998867998999999999999989
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 9999999999999987213504434789
Q gi|254780463|r 636 YITSNQWVTSIMLVATLLVSSFLLSPAL 663 (673)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (673)
-..-......+-..++...+.......+
T Consensus 636 e~el~e~~~~~~~l~~~~~~l~~~~~~l 663 (859)
T pfam01576 636 ETELAEASERVNELTAQNSSLIAQKRKL 663 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9889999999999987787689888735
No 3
>pfam10174 Cast RIM-binding protein of the cytomatrix active zone. This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Probab=97.77 E-value=0.0022 Score=37.52 Aligned_cols=98 Identities=10% Similarity=0.049 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999899899999999999999999999999986430067789999999999999999
Q gi|254780463|r 570 EKEFNSPHDIQHMLERVSLIQQGILEDDNTIPTYISAVRRATSTSTMRSNDLKEKNIGKKIWNFTKYITSNQWVTSIMLV 649 (673)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (673)
.........+......+....+.+..........+..+...+..+........+++...+..-..+-++..++--.+.-+
T Consensus 659 ~~le~~le~le~~lk~l~~E~d~l~~qle~~Q~~L~e~e~eL~~~e~El~k~~ee~~~lkqe~l~~~i~~~~~~~~~~~~ 738 (774)
T pfam10174 659 NHIEHHVQKLESDLKQLRAEREQLVAQLEKSQQSLMEFQQELNAAEAERRKHLEENRELKQEALLAAISEKDANIALLEL 738 (774)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999989999998999999986565666999984
Q ss_pred HHHCCCCHHHHHHHHHHH
Q ss_conf 872135044347899865
Q gi|254780463|r 650 ATLLVSSFLLSPALLVRE 667 (673)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~ 667 (673)
+...+-......+.|-+|
T Consensus 739 ~~~~~~~~~~~~~~~~~~ 756 (774)
T pfam10174 739 SASKKKKTQEEVALLRRE 756 (774)
T ss_pred CCCCCCCCHHHHHHHHHH
T ss_conf 210223649999998875
No 4
>KOG4674 consensus
Probab=96.31 E-value=0.05 Score=28.09 Aligned_cols=655 Identities=11% Similarity=0.040 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68999999999999999998888999999999999999999999999999999999999999999999999999999999
Q gi|254780463|r 6 PLKDHSSCAVSKKSELENPSGMTDIHRIKNWIQKVIGEEKNKPLSQEQKEKIKILWSSLRKIAGSNEEVSDPNLNSPIQR 85 (673)
Q Consensus 6 ~L~~~~~~~~~k~~ele~~~~~~~~~~~k~~~~~~~~ee~~~~l~~~~~e~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 85 (673)
+|.-......+...+--.......-...............+..+.+...+....+......+....+........+....
T Consensus 200 eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~kf~~El 279 (1822)
T KOG4674 200 ELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAESSEEKFEKEL 279 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98887899999876511289999999999998899999999999998999999999988899988865678899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999999999999999999999999999999999999-9999999999999999
Q gi|254780463|r 86 EDDCNVVRTNDDTKQIFNLLRKKLSNPHLQQHIESKTEQNGGIDPNLQSESLPTIPGTAIRED-DDIDIFHSDMAKLSKS 164 (673)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 164 (673)
.........+......+.....++...+..+..+.........+................... ..+..+...+..-...
T Consensus 280 ~~q~kL~eL~ks~~ee~~~~~~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~~an~~ 359 (1822)
T KOG4674 280 STQKKLNELWKSKLEELSHEVAELQRAIEELEKLLEDASERNKENTDQLKELEQSLSKLNEKLEKKVSRLEGELEDANDS 359 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99988999999877999999999999999999999988876377888999999999999989999999999999840136
Q ss_pred HHH-HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999-99888889------99999999999999999888875312334899999999864212447999999999999999
Q gi|254780463|r 165 ITE-LCRIISIP------GIKKSHSQLEKILSKMENIAKECSLQSVENNWKGALQHFKKLDFKNLHEKINTLSCQMNVMQ 237 (673)
Q Consensus 165 ~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (673)
... ........ ........+...-.....+.............+...+.............+......+....
T Consensus 360 ~~~~~~~~~~s~~~a~~s~~~~~~~sLtk~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~ 439 (1822)
T KOG4674 360 LSATGESSMVSEKAALASSLIRPGSSLTKLYSKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQ 439 (1822)
T ss_pred HHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77640002345677888864264216999999999999999999988999999999999999865369999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999898899999999999999999999999999999999999998786556799999999988677678643211467
Q gi|254780463|r 238 CTFDKNNNGFAASGIDEKLVSIVNSTHNLLSLLKLLNEKISTKGVLSFDTKLSEIKTAVEKNRKYAQSYTQKFVEKFEKH 317 (673)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (673)
..+..+...+......+..+...+..+.........++..+...+..+...+.-+...+.....................
T Consensus 440 ~~~~~l~~el~~~~q~~~~~e~~~~~l~~~~~~~~renk~l~~~~sdlsrqv~~Ll~el~e~~~~~~~~~~s~~~~~es~ 519 (1822)
T KOG4674 440 ETKAELSEELDFSNQKIQKLEKELESLKKQLNDLERENKLLEQQISDLSRQVNVLLLELDELRKGSKITVSSDSTENESD 519 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 99999999999999999999999999999999998899999987788999999889999999852420667511146740
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998521002578876578788633233445888887687799988888864210006887310046788779999987
Q gi|254780463|r 318 LESIGAQVQDIHSDVREQQKPAKPRLDLIEKIGERLGNLESHVANIMLKLEERQNTSEDPAILRNLENQLLNIKDLVTND 397 (673)
Q Consensus 318 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (673)
...+....---...+.........+......+...+....... ..................+.............+...
T Consensus 520 S~~iIse~Lv~F~nI~eLqekN~eLL~~vR~Lae~lE~~E~~~-~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sL 598 (1822)
T KOG4674 520 SEEIISERLVEFSNINELQEKNVELLNAVRELAEKLEAAEKTQ-DKTLQNILKETINEASEKIAELEKELEEQEQRIESL 598 (1822)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7889999999861689999988999999999999998876103-678999999999999999999999999988899999
Q ss_pred HHHHHHH-----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8778999-----------------------------99999999999999999888899999887644888999998755
Q gi|254780463|r 398 LKDNRTL-----------------------------REPDQHVFGLEDYIVKTAHKTARSMLNSINKSQDIERILQKNMH 448 (673)
Q Consensus 398 ~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (673)
....... ........................+...+..+......+...+.
T Consensus 599 l~erd~y~e~l~~~e~~~~~k~nss~~~~t~~~~~~e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~ 678 (1822)
T KOG4674 599 LTERDMYKELLAELEDSHQLKPNSSALDQTEAPRAKEKRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLE 678 (1822)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998864211313347887101003521045788899999999999998788899999999999999999998888
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4--68999999852112248999999999999998712668999999999999999999999999999999999999999
Q gi|254780463|r 449 E--YCKEIQKVHAEQTIKNFTTLYDMLVKIFQKLGTLTEEGRRLPYSTSNDLSPNHQASHKYSELFKNLCSDNTPSVNQT 526 (673)
Q Consensus 449 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (673)
. ....+.....................+......+...+............+.......+..+...+........-..
T Consensus 679 k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~ 758 (1822)
T KOG4674 679 KLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLK 758 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 68988888899999899999999999988999998899999999999999999998606899999999998777889888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999988999999999999999999999999999999999999989989999999
Q gi|254780463|r 527 RVESNTYNEQYPILSSNNSLDQHNHPHDISETQGDSVYDQKKREKEFNSPHDIQHMLERVSLIQQGILEDDNTIPTYISA 606 (673)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~ 606 (673)
.....+......+.....++.......+.................. ..+......+..+...+......+.....+
T Consensus 759 ~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e----~~i~eL~~el~~lk~klq~~~~~~r~l~~~ 834 (1822)
T KOG4674 759 ETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCE----SRIKELERELQKLKKKLQEKSSDLRELTNS 834 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7899999899998898999998899999999888888999888899----999999999999999989888899998761
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999999999986430067789999999999999999872135044347899865341059
Q gi|254780463|r 607 VRRATSTSTMRSNDLKEKNIGKKIWNFTKYITSNQWVTSIMLVATLLVSSFLLSPALLVRETFFFKS 673 (673)
Q Consensus 607 l~~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (673)
+...+......+..+....-.-. +......+.......-++.+.---...-..+.++.+
T Consensus 835 ~~~~l~~~~~~i~~~~~~~~~~~--------~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~ 893 (1822)
T KOG4674 835 LEKQLENAQNLVDELESELKSLL--------TSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDS 893 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 66679999999999998899999--------998888889999999999899999875778763154
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC; InterPro: IPR011891 The SMC (structural maintenance of chromosomes) family of proteins, exist in virtually all organisms including both bacteria and archaea. The SMC proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms and form three types of heterodimer (SMC1SMC3, SMC2SMC4, SMC5SMC6), which are core components of large multiprotein complexes. The best known complexes are cohesin, which is responsible for sister-chromatid cohesion, and condensin, which is required for full chromosome condensation in mitosis. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and share a five-domain structure, with globular N- and C-terminal (IPR003395 from INTERPRO) domains separated by a long (circa 100 nm or 900 residues) coiled coil segment in the centre of which is a globular ''hinge'' domain, characterised by a set of four highly conserved glycine residues that are typical of flexible regions in a protein. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif (XXXXD, where X is any hydrophobic residue), and a LSGG motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases . All SMC proteins appear to form dimers, either forming homodimers with themselves, as in the case of prokaryotic SMC proteins, or heterodimers between different but related SMC proteins. The dimers are arranged in an antiparallel alignment. This orientation brings the N- and C-terminal globular domains (from either different or identical protamers) together, which unites an ATP binding site (Walker A motif) within the N-terminal domain with a Walker B motif (DA box) within the C-terminal domain, to form a potentially functional ATPase. Protein interaction and microscopy data suggest that SMC dimers form a ring-like structure which might embrace DNA molecules. Non-SMC subunits associate with the SMC amino- and carboxy-terminal domains. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. SMCs share not only sequence similarity but also structural similarity with ABC proteins. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression . This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by IPR011890 from INTERPRO. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent ..
Probab=95.58 E-value=0.1 Score=25.92 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=13.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98705689999999999999999988
Q gi|254780463|r 1 MSGLTPLKDHSSCAVSKKSELENPSG 26 (673)
Q Consensus 1 ~~~~~~L~~~~~~~~~k~~ele~~~~ 26 (673)
+||+.+--.....|...-...+....
T Consensus 185 iAGvaeFD~kkekA~eeL~~V~~~~~ 210 (1202)
T TIGR02169 185 IAGVAEFDRKKEKALEELEEVEERIE 210 (1202)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 54814888999999999999999999
No 6
>pfam05622 HOOK HOOK protein. This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagel
Probab=93.59 E-value=0.29 Score=22.69 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999
Q gi|254780463|r 602 TYISAVRRATSTSTMRSNDLK 622 (673)
Q Consensus 602 ~~i~~l~~~~~~~~~~~~~l~ 622 (673)
..+..++..+......+..|.
T Consensus 622 ~e~~~L~~~l~ek~~~i~~Le 642 (713)
T pfam05622 622 PEIQLLKKQLTERDKRIRHLE 642 (713)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 789999988899999999999
No 7
>KOG0976 consensus
Probab=90.74 E-value=0.63 Score=20.35 Aligned_cols=32 Identities=13% Similarity=0.203 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999888899999999999999999999
Q gi|254780463|r 17 KKSELENPSGMTDIHRIKNWIQKVIGEEKNKP 48 (673)
Q Consensus 17 k~~ele~~~~~~~~~~~k~~~~~~~~ee~~~~ 48 (673)
++..|.-.+-+.|+.-.+..+.....++....
T Consensus 40 k~r~L~aeniiqdlrserdalhe~lvdkagln 71 (1265)
T KOG0976 40 KKRLLDAENIIQDLRSERDALHESLVDKAGLN 71 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99998788999998751788888788875234
No 8
>KOG0971 consensus
Probab=88.46 E-value=0.92 Score=19.19 Aligned_cols=50 Identities=12% Similarity=0.223 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999899899999999999999999999999986
Q gi|254780463|r 576 PHDIQHMLERVSLIQQGILEDDNTIPTYISAVRRATSTSTMRSNDLKEKN 625 (673)
Q Consensus 576 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~l~e~~ 625 (673)
...+......+......+......+...+..+...+....+...+++++.
T Consensus 1000 ~h~v~~~~ek~ee~~a~lr~Ke~efeetmdaLq~di~~lEsek~elKqrl 1049 (1243)
T KOG0971 1000 DHRVEKVQEKLEETQALLRKKEKEFEETMDALQADIDQLESEKAELKQRL 1049 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 67999999999999999999898899999999999999875389999987
No 9
>pfam05483 SCP-1 Synaptonemal complex protein 1 (SCP-1). Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Probab=76.77 E-value=2.6 Score=16.02 Aligned_cols=16 Identities=6% Similarity=0.106 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999
Q gi|254780463|r 600 IPTYISAVRRATSTST 615 (673)
Q Consensus 600 l~~~i~~l~~~~~~~~ 615 (673)
+...++.++..+.+..
T Consensus 744 lE~ELS~lk~El~slk 759 (787)
T pfam05483 744 LEIELSNIKAELLSLK 759 (787)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9989998887899999
No 10
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=33.32 E-value=14 Score=10.82 Aligned_cols=22 Identities=23% Similarity=0.296 Sum_probs=13.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 8705689999999999999999
Q gi|254780463|r 2 SGLTPLKDHSSCAVSKKSELEN 23 (673)
Q Consensus 2 ~~~~~L~~~~~~~~~k~~ele~ 23 (673)
+|+++.+.-...+..+-...+.
T Consensus 165 aGv~~y~~r~~ea~~~L~~~~~ 186 (1163)
T COG1196 165 AGVSKYKERKEEAERKLERTEE 186 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7388888889999999999999
No 11
>KOG4643 consensus
Probab=33.12 E-value=15 Score=10.80 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 479999999999999999999989889999999999
Q gi|254780463|r 221 NLHEKINTLSCQMNVMQCTFDKNNNGFAASGIDEKL 256 (673)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (673)
.+...+..+...+.++.............+..+...
T Consensus 298 tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnst 333 (1195)
T KOG4643 298 TLESEIIQLKQKLDDMRSERDTDRHKTEELHEENST 333 (1195)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 717889999887789998554578889999999889
No 12
>pfam05667 DUF812 Protein of unknown function (DUF812). This family consists of several eukaryotic proteins of unknown function.
Probab=29.03 E-value=17 Score=10.34 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999989989999999999999999999999
Q gi|254780463|r 592 GILEDDNTIPTYISAVRRATSTSTMRSNDL 621 (673)
Q Consensus 592 ~l~~~~~~l~~~i~~l~~~~~~~~~~~~~l 621 (673)
.+..+...++..|..+...+.-+..-..++
T Consensus 451 KIl~DTR~LQkeiN~~~~~L~RtF~v~DEl 480 (536)
T pfam05667 451 KILSDTRSLQKEINNITGKLDRTFTVTDEL 480 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999988888884079999999
No 13
>pfam07888 CALCOCO1 Calcium binding and coiled-coil domain (CALCOCO1) like. Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Probab=28.94 E-value=17 Score=10.33 Aligned_cols=40 Identities=10% Similarity=0.213 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999998998999999999999999
Q gi|254780463|r 575 SPHDIQHMLERVSLIQQGILEDDNTIPTYISAVRRATSTS 614 (673)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~ 614 (673)
...+++..+...+...++++.+...+..+|..+...+...
T Consensus 418 El~ELks~lrv~qkEKEqlqeE~Qel~~y~~~le~rl~~~ 457 (546)
T pfam07888 418 ELSELRSALRVLQKEKEQLQEEKQELLDYIRVLELRLDKE 457 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999889999999999999999999998675
No 14
>TIGR02168 SMC_prok_B chromosome segregation protein SMC; InterPro: IPR011890 The SMC (structural maintenance of chromosomes) family of proteins, exist in virtually all organisms including both bacteria and archaea. The SMC proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms and form three types of heterodimer (SMC1SMC3, SMC2SMC4, SMC5SMC6), which are core components of large multiprotein complexes. The best known complexes are cohesin, which is responsible for sister-chromatid cohesion, and condensin, which is required for full chromosome condensation in mitosis. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and share a five-domain structure, with globular N- and C-terminal (IPR003395 from INTERPRO) domains separated by a long (circa 100 nm or 900 residues) coiled coil segment in the centre of which is a globular ''hinge'' domain, characterised by a set of four highly conserved glycine residues that are typical of flexible regions in a protein. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif (XXXXD, where X is any hydrophobic residue), and a LSGG motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases . All SMC proteins appear to form dimers, either forming homodimers with themselves, as in the case of prokaryotic SMC proteins, or heterodimers between different but related SMC proteins. The dimers are arranged in an antiparallel alignment. This orientation brings the N- and C-terminal globular domains (from either different or identical protamers) together, which unites an ATP binding site (Walker A motif) within the N-terminal domain with a Walker B motif (DA box) within the C-terminal domain, to form a potentially functional ATPase. Protein interaction and microscopy data suggest that SMC dimers form a ring-like structure which might embrace DNA molecules. Non-SMC subunits associate with the SMC amino- and carboxy-terminal domains. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. SMCs share not only sequence similarity but also structural similarity with ABC proteins. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression . The smc gene is often associated with scpB (IPR005234 from INTERPRO) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle , , .; GO: 0005515 protein binding, 0005524 ATP binding, 0005694 chromosome.
Probab=27.95 E-value=18 Score=10.21 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=10.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 870568999999999999999
Q gi|254780463|r 2 SGLTPLKDHSSCAVSKKSELE 22 (673)
Q Consensus 2 ~~~~~L~~~~~~~~~k~~ele 22 (673)
+||++.+.....+..|-..-.
T Consensus 168 AGisKYK~Rk~Et~~kL~~t~ 188 (1191)
T TIGR02168 168 AGISKYKERKKETERKLERTR 188 (1191)
T ss_pred CCHHHHHHHHHHHHHHHHHHH
T ss_conf 135788877999999899999
No 15
>KOG0230 consensus
Probab=21.64 E-value=19 Score=9.90 Aligned_cols=10 Identities=30% Similarity=0.780 Sum_probs=4.4
Q ss_pred HHHHHHHHCC
Q ss_conf 9986534105
Q gi|254780463|r 663 LLVRETFFFK 672 (673)
Q Consensus 663 ~~~~~~~~~~ 672 (673)
+||||+|||+
T Consensus 1439 vmVMENLfY~ 1448 (1598)
T KOG0230 1439 VMVMENLFYG 1448 (1598)
T ss_pred EEEEHHHHHC
T ss_conf 3332145516
No 16
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I; InterPro: IPR010963 This entry represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerises hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of the cell.; GO: 0008415 acyltransferase activity, 0042619 poly-hydroxybutyrate biosynthetic process, 0005737 cytoplasm.
Probab=20.92 E-value=28 Score=8.84 Aligned_cols=36 Identities=17% Similarity=0.041 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf 999999999999998721350443478998653410
Q gi|254780463|r 636 YITSNQWVTSIMLVATLLVSSFLLSPALLVRETFFF 671 (673)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (673)
..+.+--.-+.+++.+..+|.|+.++|=++|+|++=
T Consensus 86 k~r~R~~Ff~~Q~inA~aPSNFL~TNPealr~~v~~ 121 (541)
T TIGR01838 86 KTRRRIEFFTRQLINAMAPSNFLATNPEALRLTVET 121 (541)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHH
T ss_conf 022799999999998505314121157999999985
Done!