Query gi|254780463|ref|YP_003064876.1| putative peptidoglycan binding protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 673
No_of_seqs 421 out of 777
Neff 12.3
Searched_HMMs 23785
Date Mon May 30 13:33:38 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780463.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 97.7 0.0016 6.6E-08 37.1 12.7 324 52-377 861-1184(1184)
2 2bsg_A Fibritin; viral protein 95.2 0.081 3.4E-06 25.1 59.7 420 199-622 43-462 (487)
3 2ch7_A Methyl-accepting chemot 19.2 19 0.00081 8.4 43.0 305 51-357 5-309 (309)
4 3iyk_A VP5; icosahedral virus; 18.3 21 0.00087 8.2 39.5 256 6-261 87-345 (526)
5 2dfs_A Myosin-5A; myosin-V, in 17.1 23 0.00096 7.9 20.1 157 43-199 920-1076(1080)
6 2jee_A YIIU; FTSZ, septum, coi 17.0 23 0.00098 7.8 11.2 74 219-292 8-81 (81)
7 3hnw_A Uncharacterized protein 16.7 24 0.001 7.8 11.2 74 221-294 65-138 (138)
8 2b9c_A Striated-muscle alpha t 16.2 25 0.001 7.6 17.7 118 186-303 21-138 (147)
9 3a7p_A Autophagy protein 16; c 15.4 27 0.0011 7.4 11.8 131 142-272 21-152 (152)
10 3c9i_A Tail needle protein GP2 15.2 27 0.0011 7.3 17.2 112 178-289 38-149 (242)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3dtp_B 3dtp_A
Probab=97.66 E-value=0.0016 Score=37.10 Aligned_cols=324 Identities=9% Similarity=0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254780463|r 52 EQKEKIKILWSSLRKIAGSNEEVSDPNLNSPIQREDDCNVVRTNDDTKQIFNLLRKKLSNPHLQQHIESKTEQNGGIDPN 131 (673)
Q Consensus 52 ~~~e~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (673)
...+.+..+...+........++......+......+...........................+...............
T Consensus 861 ~~~eel~qlkeklek~~~elqele~~~~~L~~E~~~Lq~~l~~~~~~~~~~~e~~~~~~~~~~ele~~l~~l~~~l~~~~ 940 (1184)
T 1i84_S 861 AKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEE 940 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999998899999998888999999999888899988888778999999997566655788899874479
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999888889999999999999999998888753123348999999
Q gi|254780463|r 132 LQSESLPTIPGTAIREDDDIDIFHSDMAKLSKSITELCRIISIPGIKKSHSQLEKILSKMENIAKECSLQSVENNWKGAL 211 (673)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (673)
.....+......+......+.............+....... ....................+.................
T Consensus 941 ~~~~eL~~e~~~Le~ei~eLk~qlee~e~~~~~Le~e~~~~-e~~l~~L~~el~~le~~~~~L~~e~~~Lee~l~~l~~~ 1019 (1184)
T 1i84_S 941 ERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTA-DGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTN 1019 (1184)
T ss_dssp ------------------------HHHH-------------------------------------HC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999-99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99864212447999999999999999999998988999999999999999999999999999999999999987865567
Q gi|254780463|r 212 QHFKKLDFKNLHEKINTLSCQMNVMQCTFDKNNNGFAASGIDEKLVSIVNSTHNLLSLLKLLNEKISTKGVLSFDTKLSE 291 (673)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (673)
..........+......+...+..+...+................+........................+.....++..
T Consensus 1020 l~~~ee~~~~L~~~~~kle~~i~eLe~~le~~e~~~~ele~~~~~Le~el~~lqe~l~ele~ei~~l~~~l~~~e~El~~ 1099 (1184)
T 1i84_S 1020 LAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQA 1099 (1184)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999988677678643211467999985210025788765787886332334458888876877999888888642
Q gi|254780463|r 292 IKTAVEKNRKYAQSYTQKFVEKFEKHLESIGAQVQDIHSDVREQQKPAKPRLDLIEKIGERLGNLESHVANIMLKLEERQ 371 (673)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (673)
....+........... .....+...+..+...+................+......+...+..................
T Consensus 1100 l~~~lee~~~~~~~l~-kei~eLe~ei~eLeeeLe~~~~~~~~lekq~~eL~~eLeeLk~eLee~~d~~~~q~ELr~s~~ 1178 (1184)
T 1i84_S 1100 ALARLEDETSQKNNAL-KKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDY 1178 (1184)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999-999999999999999999999999999999999999999999999999989999999999998
Q ss_pred HCCHHH
Q ss_conf 100068
Q gi|254780463|r 372 NTSEDP 377 (673)
Q Consensus 372 ~~~~~~ 377 (673)
....+.
T Consensus 1179 kekeDK 1184 (1184)
T 1i84_S 1179 KDDDDK 1184 (1184)
T ss_dssp ------
T ss_pred HHHHCC
T ss_conf 887069
No 2
>2bsg_A Fibritin; viral protein, attachment protein, bacteriophage assembly, chaperone, coiled coil, structural protein; 15.00A {Bacteriophage T4}
Probab=95.19 E-value=0.081 Score=25.08 Aligned_cols=420 Identities=7% Similarity=-0.073 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 31233489999999986421244799999999999999999999898899999999999999999999999999999999
Q gi|254780463|r 199 SLQSVENNWKGALQHFKKLDFKNLHEKINTLSCQMNVMQCTFDKNNNGFAASGIDEKLVSIVNSTHNLLSLLKLLNEKIS 278 (673)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (673)
..+......+...+..+...+..+...+..+...+..+...+...... .....+......+..+..........+...
T Consensus 43 ~~Ln~~~~~lQ~~i~~L~~~~~~l~~~i~~l~~~i~~l~~~~~~~~~~--~~~~qi~~~~~~i~~L~~~~~~~~~~l~~l 120 (487)
T 2bsg_A 43 GSMNRPTVSVLRNVEVLDKNIGILKTSLETANSDIKTIQGILDVSGDI--EALAQIGINKKDISDLKTLTSEHTEILNGT 120 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 356589999999999999999999999999999999999998873205--899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999878655679999999998867767864321146799998521002578876578788633233445888887687
Q gi|254780463|r 279 TKGVLSFDTKLSEIKTAVEKNRKYAQSYTQKFVEKFEKHLESIGAQVQDIHSDVREQQKPAKPRLDLIEKIGERLGNLES 358 (673)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (673)
...+..+...+......+........................+......+...........................+..
T Consensus 121 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 200 (487)
T 2bsg_A 121 NNTVDSILADIGPFNAEANSVYRTIRNDLLWIKRELGQYTGQDINGLPVVGNPSSGMKHRIINNTDVITSQGIRLSELET 200 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999989999999988789999999999999999999999999988999998
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79998888886421000688731004678877999998787789999999999999999999988889999988764488
Q gi|254780463|r 359 HVANIMLKLEERQNTSEDPAILRNLENQLLNIKDLVTNDLKDNRTLREPDQHVFGLEDYIVKTAHKTARSMLNSINKSQD 438 (673)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (673)
................................................................................
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (487)
T 2bsg_A 201 KFIESDVGSLTIEVGNLREELGPKPPSFSQNVYSRLNEIDTKQTTVESDISAIKTSIGYPGNNSIITSVNTNTDNIASIN 280 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88678899998677888888999999889999999999999999998889999999999999999888878999987789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999987554689999998521122489999999999999987126689999999999999999999999999999999
Q gi|254780463|r 439 IERILQKNMHEYCKEIQKVHAEQTIKNFTTLYDMLVKIFQKLGTLTEEGRRLPYSTSNDLSPNHQASHKYSELFKNLCSD 518 (673)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (673)
...................... .................+..+...................................
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (487)
T 2bsg_A 281 LELNQSGGIKQRLTVIETSIGS--DDIPSSIKGQIKDNTTSIESLNGIVGENTSSGLRANVSWLNQIVGTDSSGGQPSPP 358 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999998888789999997--88899999999999999999999999989999878889999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999889999999999999999999999999999999999999899
Q gi|254780463|r 519 NTPSVNQTRVESNTYNEQYPILSSNNSLDQHNHPHDISETQGDSVYDQKKREKEFNSPHDIQHMLERVSLIQQGILEDDN 598 (673)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 598 (673)
....................+.......................................+......+......+.....
T Consensus 359 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~l~~~~~~l~~~~~ 438 (487)
T 2bsg_A 359 GSLLNRVSTIETSVSGLNNAVQNLQVEIGNNSAGIKGQVVALNTLVNGTNPNGSTVEERGLTNSIKANETNIASVTQEVN 438 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 75899999999999999999999999999999999999999999999998778799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899999999999999999999999
Q gi|254780463|r 599 TIPTYISAVRRATSTSTMRSNDLK 622 (673)
Q Consensus 599 ~l~~~i~~l~~~~~~~~~~~~~l~ 622 (673)
.+...+..+...+...........
T Consensus 439 ~~~~~~~~l~~~~~~l~~~~~~~e 462 (487)
T 2bsg_A 439 TAKGNISSLQGDVQALQEAGYIPE 462 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999987664232
No 3
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Probab=19.21 E-value=19 Score=8.43 Aligned_cols=305 Identities=10% Similarity=0.028 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254780463|r 51 QEQKEKIKILWSSLRKIAGSNEEVSDPNLNSPIQREDDCNVVRTNDDTKQIFNLLRKKLSNPHLQQHIESKTEQNGGIDP 130 (673)
Q Consensus 51 ~~~~e~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (673)
.........+......+......+......+......+......+......+......+......+..............
T Consensus 5 ~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (309)
T 2ch7_A 5 KDVQTETFSVAESIEEISKANEEITNQLLGISKEMDNISTRIESISASVQETTAGSEEISSATKNIADSAQQAASFADQS 84 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999988888999999999999999999888875312334899999
Q gi|254780463|r 131 NLQSESLPTIPGTAIREDDDIDIFHSDMAKLSKSITELCRIISIPGIKKSHSQLEKILSKMENIAKECSLQSVENNWKGA 210 (673)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (673)
.............+......+......+......+......+... ..................................
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (309)
T 2ch7_A 85 TQLAKEAGDALKKVIEVTRMISNSAKDVERVVESFQKGAEEITSF-VETINAIAEQTNLLALNAAIEAARAGEAGRGFAV 163 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999856799999999999999999999999999999999999-9999988988879878559999885554552688
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99986421244799999999999999999999898899999999999999999999999999999999999998786556
Q gi|254780463|r 211 LQHFKKLDFKNLHEKINTLSCQMNVMQCTFDKNNNGFAASGIDEKLVSIVNSTHNLLSLLKLLNEKISTKGVLSFDTKLS 290 (673)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (673)
......................+..+...............................+.............+........
T Consensus 164 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~i~~~~~ 243 (309)
T 2ch7_A 164 VADEIRKLAEESQQASENVRRVVNEIRSIAEDAGKVSSEITARVEEGTKLADEADEKLNSIVGAVERINEMLQNIAAAIE 243 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88788767753167899999999999999999999999989999872355788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7999999999886776786432114679999852100257887657878863323344588888768
Q gi|254780463|r 291 EIKTAVEKNRKYAQSYTQKFVEKFEKHLESIGAQVQDIHSDVREQQKPAKPRLDLIEKIGERLGNLE 357 (673)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (673)
.....+. ...............+......+......+.............+......+...+..+.
T Consensus 244 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~v~~fk 309 (309)
T 2ch7_A 244 EQTAAVD-EITTAMTENAKNAEEITNSVKEVNARLQEISASTEEVTSRVQTIRENVQMLKEIVARYK 309 (309)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTHHHHHHC
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999-99999999999999999999999999999999999999999999999999999987459
No 4
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=18.27 E-value=21 Score=8.19 Aligned_cols=256 Identities=8% Similarity=-0.074 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68999999999999999998888999999999999999999999999999999999999999999999999999999999
Q gi|254780463|r 6 PLKDHSSCAVSKKSELENPSGMTDIHRIKNWIQKVIGEEKNKPLSQEQKEKIKILWSSLRKIAGSNEEVSDPNLNSPIQR 85 (673)
Q Consensus 6 ~L~~~~~~~~~k~~ele~~~~~~~~~~~k~~~~~~~~ee~~~~l~~~~~e~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 85 (673)
+|......+..+..+++..........................+..........+......+......+......+....
T Consensus 87 ~Ls~~E~eLq~KlkeLE~e~k~~~~~~k~~e~~~ekl~~eLeelkk~~~~~~k~~~e~e~eie~Lek~le~l~k~l~e~e 166 (526)
T 3iyk_A 87 PLSPGERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKILTEED 166 (526)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88889999999999999999999999988899999999999999999999999999999999999999998899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999999999999999999999---99999999999999999999999999999
Q gi|254780463|r 86 EDDCNVVRTNDDTKQIFNLLRKKLSNPHLQQHIESKTEQNGGIDPNLQ---SESLPTIPGTAIREDDDIDIFHSDMAKLS 162 (673)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (673)
.........+...................................... .............................
T Consensus 167 ~el~~l~~~L~ke~~e~~~~e~~l~ee~~~~~e~l~~~l~~e~~~l~ee~~~~~~~~~~e~~e~~~ee~e~~~~~~e~~~ 246 (526)
T 3iyk_A 167 LQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKNAIEVERDGMQEEAIQEIAGMTADVLEAASEEVPLIGAGMATAV 246 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99987888888899999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998888899999999999999999988887531233489999999986421244799999999999999999999
Q gi|254780463|r 163 KSITELCRIISIPGIKKSHSQLEKILSKMENIAKECSLQSVENNWKGALQHFKKLDFKNLHEKINTLSCQMNVMQCTFDK 242 (673)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (673)
...............................................................+......+..+...+..
T Consensus 247 ~~~~~~ee~~klke~~~~l~~~~~~~~e~~~~~~~~~e~~le~~~~e~~~~~L~~~i~ek~~~ieE~~~Ele~l~qEi~~ 326 (526)
T 3iyk_A 247 ATGRAIEGAYKLKKVINALSGIDLTHLRTPKIEPSVVSTILEYRAKEIPDNALAVSVLSKNRAIQENHKELMHIKNEILP 326 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999998899999999999987799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 8988999999999999999
Q gi|254780463|r 243 NNNGFAASGIDEKLVSIVN 261 (673)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~ 261 (673)
...................
T Consensus 327 ~~KK~~EE~kei~~~~~k~ 345 (526)
T 3iyk_A 327 RFKKAMDEEKEICGIEDKV 345 (526)
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999998888878
No 5
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomography, contractIle protein/transport protein complex; 24.00A {Gallus gallus}
Probab=17.10 E-value=23 Score=7.88 Aligned_cols=157 Identities=5% Similarity=-0.069 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254780463|r 43 EEKNKPLSQEQKEKIKILWSSLRKIAGSNEEVSDPNLNSPIQREDDCNVVRTNDDTKQIFNLLRKKLSNPHLQQHIESKT 122 (673)
Q Consensus 43 ee~~~~l~~~~~e~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (673)
......+..+..+....+.............+.............+......+....................+......
T Consensus 920 q~~~~~LE~kl~eLq~klee~e~e~~~L~~kl~~le~~~~~e~e~L~~~~e~le~~~~e~~~~~~~~~~lqeEl~~l~~e 999 (1080)
T 2dfs_A 920 KKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKE 999 (1080)
T ss_dssp -------------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999888889999999999999999998888753
Q gi|254780463|r 123 EQNGGIDPNLQSESLPTIPGTAIREDDDIDIFHSDMAKLSKSITELCRIISIPGIKKSHSQLEKILSKMENIAKECS 199 (673)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (673)
......+.....................+......+......+..................................
T Consensus 1000 l~~~~~e~~~Lee~~~~~~~ele~l~~eL~e~~~~L~~e~eeL~~~l~e~~~~~~e~~ek~l~ee~k~l~~Ele~eR 1076 (1080)
T 2dfs_A 1000 LHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDER 1076 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999999
No 6
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=16.97 E-value=23 Score=7.85 Aligned_cols=74 Identities=7% Similarity=0.028 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 24479999999999999999999989889999999999999999999999999999999999999878655679
Q gi|254780463|r 219 FKNLHEKINTLSCQMNVMQCTFDKNNNGFAASGIDEKLVSIVNSTHNLLSLLKLLNEKISTKGVLSFDTKLSEI 292 (673)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (673)
+..+...+...-..+.-++-++..+......+..+..........+......+..+.......+..+-..+...
T Consensus 8 leqLE~KIqqAvdTI~LLQMEieELKEkn~~L~qe~~~~~~~~e~L~~eN~qLk~E~~~WqeRlr~LLGKmdeV 81 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRMEEV 81 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999999999999999999999875778899998886589999999998999999999999987103049
No 7
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative; 2.20A {Eubacterium eligens atcc 27750}
Probab=16.72 E-value=24 Score=7.78 Aligned_cols=74 Identities=8% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 47999999999999999999998988999999999999999999999999999999999999987865567999
Q gi|254780463|r 221 NLHEKINTLSCQMNVMQCTFDKNNNGFAASGIDEKLVSIVNSTHNLLSLLKLLNEKISTKGVLSFDTKLSEIKT 294 (673)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (673)
.+...+.........+...+.............+......+..+...+......+..+...+..+..++.....
T Consensus 65 niaDel~~~~~~~~~l~~~~~~~~~e~~~~k~el~~l~~e~e~l~e~le~l~~el~~L~~~l~~le~Ele~~kk 138 (138)
T 3hnw_A 65 NIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELNDSKK 138 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 88999998887889999989999999999998999999999999999999999999999999999999977149
No 8
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=16.17 E-value=25 Score=7.62 Aligned_cols=118 Identities=8% Similarity=-0.038 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998888753123348999999998642124479999999999999999999989889999999999999999999
Q gi|254780463|r 186 KILSKMENIAKECSLQSVENNWKGALQHFKKLDFKNLHEKINTLSCQMNVMQCTFDKNNNGFAASGIDEKLVSIVNSTHN 265 (673)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (673)
.....+..................................+..+...+..+...+..+...+.........+...+....
T Consensus 21 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (147)
T 2b9c_A 21 TALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 100 (147)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999998899999999999999999999999999999899888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999987865567999999999886
Q gi|254780463|r 266 LLSLLKLLNEKISTKGVLSFDTKLSEIKTAVEKNRKYA 303 (673)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (673)
.........+......+..+...+.............+
T Consensus 101 ~~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~le~ei 138 (147)
T 2b9c_A 101 GKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEV 138 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98999999999999779999999999999999999999
No 9
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=15.42 E-value=27 Score=7.41 Aligned_cols=131 Identities=14% Similarity=-0.031 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999998888899999999999999999988887531233489999999986421244
Q gi|254780463|r 142 GTAIREDDDIDIFHSDMAKLSKSITELCRIISIPGIKKSHSQLEKILSKMENIAKECSLQSVENNWKGALQHFKKLDFKN 221 (673)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (673)
.........+.........+......+......................+..+.................+......+..
T Consensus 21 ~~~~~l~~~~~~~~~~~~el~~~~~el~~~~~~~~~~~~~~~~~~~~~~l~~l~~el~~~~~e~~~l~~el~~~~~~~~~ 100 (152)
T 3a7p_A 21 PQTDSMDDLLIRRLTDRNDKEAHLNELFQDNSGAIGGNIVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTER 100 (152)
T ss_dssp ------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 11030888999889899999988999999888876888888778899999999999999999999999999998999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q ss_conf 79999999999999999999989889999999-9999999999999999999
Q gi|254780463|r 222 LHEKINTLSCQMNVMQCTFDKNNNGFAASGID-EKLVSIVNSTHNLLSLLKL 272 (673)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 272 (673)
+...+..+...+..+...+..+......+... ..........+...++...
T Consensus 101 l~~e~~~l~~e~~~le~~l~~l~~E~~~l~~r~~~~~~~eae~ln~ele~~k 152 (152)
T 3a7p_A 101 LNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEKETEAMNSEIDGTK 152 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999999999999999999999999999999999999998754159
No 10
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=15.21 E-value=27 Score=7.35 Aligned_cols=112 Identities=6% Similarity=-0.029 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999988887531233489999999986421244799999999999999999999898899999999999
Q gi|254780463|r 178 KKSHSQLEKILSKMENIAKECSLQSVENNWKGALQHFKKLDFKNLHEKINTLSCQMNVMQCTFDKNNNGFAASGIDEKLV 257 (673)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (673)
.............+...........................+......+..+...+......+..+...+.........+
T Consensus 38 ~~~~~~v~~~~~~~~~i~~k~~e~~~~~~~~q~~~~e~~~el~~~~~~i~~l~~~l~~~~~~i~~~e~~l~~~~~~~~~~ 117 (242)
T 3c9i_A 38 KSYLLYVIAQGTDVGAIAGKANEAGQGAYDAQVKNDEQDVELADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTA 117 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 56899999887569999999999999999999999999999999999999999999999999999999887789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999878655
Q gi|254780463|r 258 SIVNSTHNLLSLLKLLNEKISTKGVLSFDTKL 289 (673)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (673)
.................+......+..+...+
T Consensus 118 ~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~~ 149 (242)
T 3c9i_A 118 EGEIASLQTNVSALDGRVTTAENNISALQADY 149 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98898878899889999988999999999999
Done!