RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780463|ref|YP_003064876.1| putative peptidoglycan binding
protein [Candidatus Liberibacter asiaticus str. psy62]
         (673 letters)



>gnl|CDD|34155 COG4477, EzrA, Negative regulator of septation ring formation [Cell
           division and chromosome partitioning].
          Length = 570

 Score = 37.5 bits (87), Expect = 0.011
 Identities = 37/183 (20%), Positives = 74/183 (40%), Gaps = 13/183 (7%)

Query: 219 FKNLHEKINTLSCQMNVMQCTFDKNNNGFAASGID------EKLVSIVNSTHNLLSLLKL 272
            + L E++   S  +  ++    +   G     I+      E+ V   N     L +L  
Sbjct: 257 LERLKEQLVENSELLTQLELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPD 316

Query: 273 LNEKISTKGVLSFDTKLSEIKTAVEKNRKYAQSYTQKFVEKFEKHLESIGAQVQDIHSDV 332
             EK         +  L E    V+++ + A++     V KFEK L+ + + + +I  ++
Sbjct: 317 YLEKAKEN-----NEHLKEEIERVKESYRLAETELG-SVRKFEKELKELESVLDEILENI 370

Query: 333 REQQKPAKPRLDLIEKIGERLGNLESHVANIMLKLEE-RQNTSEDPAILRNLENQLLNIK 391
             Q+       D +E+I + L ++E     +   L   R++  E    L  L+++L  IK
Sbjct: 371 EAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIK 430

Query: 392 DLV 394
             +
Sbjct: 431 RYM 433


>gnl|CDD|31474 COG1283, NptA, Na+/phosphate symporter [Inorganic ion transport and
           metabolism].
          Length = 533

 Score = 33.6 bits (77), Expect = 0.17
 Identities = 44/190 (23%), Positives = 69/190 (36%), Gaps = 40/190 (21%)

Query: 305 SYTQKFVEKFEKHLESIGAQVQDI---HSDVREQQKPAK------PRLDLIEKIGERLG- 354
              ++ +E+  +++E    +V++I      V    +  K       +  L E+   R   
Sbjct: 345 DSIEQMLERLYEYIEGDAKKVKEIRKLEDAVDRLYEEIKLYLARLSKEGLSEEESRRWAE 404

Query: 355 ------NLESHVANIMLKLEERQNT--------SED------PAILRNLENQLLNIKDLV 394
                 NLE H+ +I+ +L E  +         SED            LEN  L I  LV
Sbjct: 405 IIDAAINLE-HIGDIIERLLELADKKIANGRAFSEDGLEELDALFALTLENLRLAISVLV 463

Query: 395 TNDLKDNRTLREPDQHVFGLEDYIVKTAHKTARSMLNSINKS---QDIERILQK------ 445
           T DL+  R L E  + V  LE    K      R    S+  S    DI R L++      
Sbjct: 464 TGDLELARRLVERKKRVRRLERRSSKRHLDRLRDGAASVETSSLHLDILRDLKRINSHIA 523

Query: 446 NMHEYCKEIQ 455
           ++     E  
Sbjct: 524 SVAYPVLEES 533


>gnl|CDD|147678 pfam05649, Peptidase_M13_N, Peptidase family M13.  M13 peptidases
           are well-studied proteases found in a wide range of
           organisms including mammals and bacteria. In mammals
           they participate in processes such as cardiovascular
           development, blood-pressure regulation, nervous control
           of respiration, and regulation of the function of
           neuropeptides in the central nervous system. In bacteria
           they may be used for digestion of milk.
          Length = 379

 Score = 31.9 bits (73), Expect = 0.57
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 265 NLLSLLKLLNEKIST--KGVLSFDTKLSEIKTAVEKNRKYAQSYTQKFVEKFEK 316
            LL L  L  ++     + V++F+TKL++   + E+ R YA+ Y    + + + 
Sbjct: 163 KLLKLAGLDEDEAEKAAEDVVAFETKLAKASWSREELRDYAKLYNPMTLAELQA 216


>gnl|CDD|37429 KOG2218, KOG2218, KOG2218, ER to golgi transport
           protein/RAD50-interacting protein 1 [Intracellular
           trafficking, secretion, and vesicular transport, Cell
           cycle control, cell division, chromosome partitioning].
          Length = 737

 Score = 31.5 bits (71), Expect = 0.82
 Identities = 25/141 (17%), Positives = 51/141 (36%), Gaps = 3/141 (2%)

Query: 403 TLREPDQHVFGLEDYIVKTAHKTARS-MLNSINKSQDIERILQKNMHEYCKEIQKVHAEQ 461
           TL E D  +F LE+ I  +A K   S   +   +  +IE IL   +H   +++ +    +
Sbjct: 126 TLLELDTLLFSLENSIFLSASKALFSTSFSLFEEINNIEEILVARLHLIWRKLFRSFDRR 185

Query: 462 TIKNFTTLYDMLVKIFQKLGTLTEEGRRLPYSTSNDLSPN--HQASHKYSELFKNLCSDN 519
           T+K    L       F+ + +          S S  L           + + F  L  + 
Sbjct: 186 TVKWHKLLRKQKSSDFEAILSSLRWPLATLMSESVGLKSPLREMLKSLFCQSFLFLSEET 245

Query: 520 TPSVNQTRVESNTYNEQYPIL 540
               ++  ++    + +  + 
Sbjct: 246 LQGESRRPLQYFKESVEPVLW 266


>gnl|CDD|144876 pfam01442, Apolipoprotein, Apolipoprotein A1/A4/E domain.  These
           proteins contain several 22 residue repeats which form a
           pair of alpha helices. This family includes:
           Apolipoprotein A-I, Apolipoprotein A-IV, and
           Apolipoprotein E.
          Length = 191

 Score = 31.4 bits (72), Expect = 0.88
 Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 2/91 (2%)

Query: 283 LSFDTKLSEIKTAVEKNRKYAQSYTQKFVEKFEKHLESIGAQVQDIHSDVREQQKPAKPR 342
                 L E+ +  E+ ++    Y Q+F  +  K  E++  ++Q    +VR + +P    
Sbjct: 1   TLLSDSLDELNSYAEELQEQLGPYAQEFWAQLSKETEALREELQKDLEEVRARLQPY--L 58

Query: 343 LDLIEKIGERLGNLESHVANIMLKLEERQNT 373
            +L  K+G+ L  L   +A    +L ER N 
Sbjct: 59  DELKAKVGQNLEELRQRLAPYAEELRERLNR 89


>gnl|CDD|147584 pfam05478, Prominin, Prominin.  The prominins are an emerging
           family of proteins that among the multispan membrane
           proteins display a novel topology. Mouse prominin and
           human prominin (mouse)-like 1 (PROML1) are predicted to
           contain five membrane spanning domains, with an
           N-terminal domain exposed to the extracellular space
           followed by four, alternating small cytoplasmic and
           large extracellular, loops and a cytoplasmic C-terminal
           domain. The exact function of prominin is unknown
           although in humans defects in PROM1, the gene coding for
           prominin, cause retinal degeneration.
          Length = 809

 Score = 30.8 bits (70), Expect = 1.5
 Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 16/124 (12%)

Query: 366 KLEERQNTSEDPAILRNLENQLLNIKDLVTNDLKDNRTLREPDQHVFGLEDY--IVKTAH 423
           +L+   N   +  +   L+N+ L+++ +  N +    +L         LE     VKT  
Sbjct: 631 ELDALANNLPNGKLKVALKNEALDLRSIQQNFVPPMESL---------LEKLNSNVKTLD 681

Query: 424 KTARSMLNSI----NKSQDIERILQKNMHEYCKEIQKVHAEQTIKNFTTLYDM-LVKIFQ 478
           +++  + N++     + Q  +  L  N  E   E  K   ++ +       D  + +I +
Sbjct: 682 ESSNDLQNAVKDVLAEVQAAQGFLNNNASEIVNEESKKFLDRILGYIDQYIDWVIEEITE 741

Query: 479 KLGT 482
           K+G 
Sbjct: 742 KVGR 745


>gnl|CDD|37671 KOG2460, KOG2460, KOG2460, Signal recognition particle, subunit
           Srp68 [Intracellular trafficking, secretion, and
           vesicular transport].
          Length = 593

 Score = 30.4 bits (68), Expect = 1.6
 Identities = 67/420 (15%), Positives = 127/420 (30%), Gaps = 79/420 (18%)

Query: 206 NWKGALQHFK--KLDFKNLHEKINTL-----------SCQMNVMQCTFDKNNNGFAASGI 252
            WK A + F   KL ++ L    N               Q N+  C ++      +   I
Sbjct: 167 KWKDAAEAFNNAKLVYEKLAHAKNLELEESVYDNRVNEIQPNLRYCAYNIIGPE-SNGFI 225

Query: 253 DEKLVSIVNSTHNLLSLLKLLNEKISTKGVLSFDTKLSEIKTAVEKNRKYAQSYTQKFVE 312
           DE + S       L+ LL+ ++  IS +      T      T      +  +       E
Sbjct: 226 DELMQSREQKDEELVKLLESVDFLISIQ------TSTESSATTTTIEWRGRKVKVI--DE 277

Query: 313 KFEKHLESIGAQVQDIHSDVREQQKPAKPRLDLIEKIGERLGN-LESHVANIMLKLEERQ 371
           K  + L        DI   + +       +L L+EK   R  + +++    I +  ++R 
Sbjct: 278 KVRQFLLQG----LDIEPALAQITTY-DQKLSLLEKALARCEDAIQNVRDEIKIDEKQRN 332

Query: 372 NTSEDPAILRNLENQLLNIKDLVTNDLKDNRTLREPDQHVFGLEDYIVKTAHKTARSMLN 431
           +T     IL  L+   L        D   N                 +     + ++   
Sbjct: 333 STLNGQIILAYLKYNKLLTTISRNEDAFTN-----------------LWNQWLSQQTSDP 375

Query: 432 SINKSQDIERILQKNMHEYCKEIQKVHAEQTIKNFTTLYDMLVKIFQKLGTLTEEGRRLP 491
              + QD+ER L  ++ +   EI ++   ++ K   +  ++    F+             
Sbjct: 376 KKLRPQDLER-LYDSIIKNLSEIMELPGLESDKELQSQLELKKLYFKAFRCFY------- 427

Query: 492 YSTSNDLSPNHQASHKYSELFKNLCSDNTPSVNQTRVESNTYNEQYPILSSNNSLDQHNH 551
                 ++ ++QA  KYSE    L       + +   E  ++ E    L           
Sbjct: 428 ------IAVSYQAKKKYSEALA-LYVRAYSYLQEVNSELESFKESLLPLLLLEL------ 474

Query: 552 PHDISETQGDSVYDQKKR----------EKEFNSPHDIQHMLERVSLIQQGILEDDNTIP 601
              ISE Q                        +   D   ++E +   +  +  D     
Sbjct: 475 ---ISELQKRKESLGAAVILLAEYAKRTNTGGSQGKDNLPLVETLDSYKLDLSLDTKLPN 531


>gnl|CDD|33075 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell
           envelope biogenesis, outer membrane].
          Length = 835

 Score = 29.9 bits (67), Expect = 2.4
 Identities = 29/189 (15%), Positives = 60/189 (31%), Gaps = 43/189 (22%)

Query: 264 HNLLSLLKLLNEK-------------ISTKGVLSFDTKLSEIKTAVEKNRKYAQSYTQKF 310
             L  L + +N K             +  + +        ++  A+ +  +   +     
Sbjct: 29  AALQLLQEAVNSKRQEEAEPAAEEAELQAELIQQELAINDQLSQALNQQTERLNALASD- 87

Query: 311 VEKFEKHLESIGAQVQDIHSDVREQQKPAKPRLDLIEKIGERLGNL--ESHVANIMLKLE 368
               ++ L ++  Q+      +REQ    +  L L   + ++LG L             +
Sbjct: 88  ----DRQLANLLLQLLQSSRTIREQIAVLRGSLLLSRILLQQLGPLPEAGQPQEQFEVTQ 143

Query: 369 ERQN-TSEDPAILRNLENQLLNIKDLVTNDLKDNRTLREPDQHVFGLEDYIVKTAHKTAR 427
           ER    +E   I     N L    + +T +++D                 I+     T R
Sbjct: 144 ERDALQAEKAYI-----NALEGQAEQLTAEVRD-----------------ILDQILDTRR 181

Query: 428 SMLNSINKS 436
            +LNS+   
Sbjct: 182 ELLNSLLSQ 190


>gnl|CDD|36214 KOG0996, KOG0996, KOG0996, Structural maintenance of chromosome
            protein 4 (chromosome condensation complex Condensin,
            subunit C) [Chromatin structure and dynamics, Cell cycle
            control, cell division, chromosome partitioning].
          Length = 1293

 Score = 29.9 bits (67), Expect = 2.4
 Identities = 57/413 (13%), Positives = 146/413 (35%), Gaps = 26/413 (6%)

Query: 81   SPIQREDDCNVVRTNDDTKQIFNLLRKKLS--NPHLQQHIESKTEQNGGIDPNLQSESLP 138
              ++       +R    +K+    L + LS  +   +QH E   E    +      E +P
Sbjct: 759  KKVKGGRMGTSIRVTGVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKL--RERIP 816

Query: 139  TIPGTAIREDDDIDIFHSDMAKLSKSITEL-CRIISIPGIKKSHSQLEKILSKMENIAKE 197
             +     +    +      +  L   I EL   ++     KK   +LE+ + +++     
Sbjct: 817  ELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELK----- 871

Query: 198  CSLQSVENNWKGALQHFKKLDFKNLHEKINTLSCQMNVMQCTFDKNNNGFAASGIDEKLV 257
               + VE   + A +  +  + +N  ++I     Q    +            + I +  V
Sbjct: 872  ---KEVEELQEKAAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTV 928

Query: 258  SIVNSTHNLLSLLKLLNEKISTKGVLSFDTKLSEIKTAVEKNRKYA---QSYTQKFVEKF 314
            +I  S  N+    K L+E    + +   + +L ++   ++   + A   +   ++  E  
Sbjct: 929  AIKTSDRNIAKAQKKLSE--LEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESL 986

Query: 315  EKHLESIGAQVQDIHSDVREQQKPAKPRLDLIEKIGERLGNLESHVANIMLKLEERQN-- 372
            ++  + +     ++ +  + + +    R+D+  K+    G L    + I  + E+     
Sbjct: 987  KEIKKELRDLKSELENIKKSENELKAERIDIENKLEAINGELNEIESKIK-QPEKELKKL 1045

Query: 373  -----TSEDPAILRNLENQLLNIKDLVTNDLKDNRTLREPDQHVFGLEDYIVKTAHKTAR 427
                 T   P I  ++E+      +++ +++ +   L E         D  V   +    
Sbjct: 1046 SLCNMTETRPQIELDVESPEELEAEMLEDNINEKIALLEKRVEELREVDLGVIAEYAKKV 1105

Query: 428  SMLNSINKSQDIERILQKNMHEYCKEIQKVHAEQTIKNFTTLYDMLVKIFQKL 480
             +        +     +    E  +E++K   ++ +  F  +   L +++Q +
Sbjct: 1106 ELYLKRVAELEKFTQKRDEHREKLEELRKRRLDEFMAGFNIISMKLKEMYQMI 1158


>gnl|CDD|31697 COG1508, RpoN, DNA-directed RNA polymerase specialized sigma
           subunit, sigma54 homolog [Transcription].
          Length = 444

 Score = 29.5 bits (66), Expect = 2.8
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 2   SGLTPLKDHSSCAVSKKSELENPSGMTDIHRIKNWIQKVIGEEKNKPLS 50
            GL  LK   S +++     E  S       IK  I+    E+K KPLS
Sbjct: 360 RGLFELKYFFSSSLASSEGGEASSTEAIKALIKKLIEA---EDKKKPLS 405


>gnl|CDD|30902 COG0556, UvrB, Helicase subunit of the DNA excision repair complex
           [DNA replication, recombination, and repair].
          Length = 663

 Score = 29.4 bits (66), Expect = 3.2
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 286 DTKLSEIKTAVEKN-RKYAQSYTQKFVEKFEKHLESIGAQVQDIHSDV 332
           D  LSEI+  V KN R    + T+K  E   ++L+ +G +V+ +HSD+
Sbjct: 433 DDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDI 480


>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent
           protein Kinase-like Serine/Threonine Kinases.
           Serine/Threonine Kinases (STKs), Cyclin-Dependent
           protein Kinase (CDK)-like subfamily, catalytic (c)
           domain. STKs catalyze the transfer of the
           gamma-phosphoryl group from ATP to serine/threonine
           residues on protein substrates. The CDK-like subfamily
           is part of a larger superfamily that includes the
           catalytic domains of other protein STKs, protein
           tyrosine kinases, RIO kinases, aminoglycoside
           phosphotransferase, choline kinase, and phosphoinositide
           3-kinase. CDKs belong to a large family of STKs that are
           regulated by their cognate cyclins. Together, they are
           involved in the control of cell-cycle progression,
           transcription, and neuronal function. CDKs are partly
           regulated by their subcellular localization, which
           defines substrate phosphorylation and the resulting
           specific function. CDK1, CDK2, CDK4, and CDK6 have
           well-defined functions in the cell cycle, such as the
           regulation of the early G1 phase by CDK4 or CDK6, the
           G1/S phase transition by CDK2, or the entry of mitosis
           by CDK1. They also exhibit overlapping cyclin
           specificity and functions in certain conditions.
           Knockout mice with a single CDK deleted remain viable
           with specific phenotypes, showing that some CDKs can
           compensate for each other. For example, CDK4 can
           compensate for the loss of CDK6, however, double
           knockout mice with both CDK4 and CDK6 deleted die in
           utero. CDK8 and CDK9 are mainly involved in
           transcription while CDK5 is implicated in neuronal
           function. CDK7 plays essential roles in both the cell
           cycle as a CDK-Activating Kinase (CAK) and in
           transcription as a component of the general
           transcription factor TFIIH.
          Length = 282

 Score = 29.4 bits (67), Expect = 3.3
 Identities = 12/17 (70%), Positives = 12/17 (70%)

Query: 470 YDMLVKIFQKLGTLTEE 486
            D L KIFQ LGT TEE
Sbjct: 205 IDQLFKIFQILGTPTEE 221


>gnl|CDD|39109 KOG3906, KOG3906, KOG3906, Tryptophan 2,3-dioxygenase [Amino acid
           transport and metabolism].
          Length = 399

 Score = 28.9 bits (64), Expect = 4.9
 Identities = 38/176 (21%), Positives = 65/176 (36%), Gaps = 46/176 (26%)

Query: 240 FDKNNNGFAASGIDE-KLVSIVNSTHNLLSLLKLLNEKIS-------------------T 279
            D        + +DE K + IV+    +  +LKLL E+I+                    
Sbjct: 86  LDSVRKLLNNTVVDETKTLKIVSRLDRVTKILKLLVEQITILETMTPLDFVDFRKYLTPA 145

Query: 280 KGVLSFDTKLSEIKTAVEKNRKY---AQSYTQKFVEKFEKHLESIGAQVQDIHSDVREQQ 336
            G  S   +L E K  V + R+    AQ Y   F +             +++ +    ++
Sbjct: 146 SGFQSLQFRLLENKLGVLQERRVKYNAQHYKDVFND-------------EELKTLNVSEE 192

Query: 337 KPAKPRLDLIEKIGERLGNLESHVANIMLKLEERQNTSEDPAILRNLENQLLNIKD 392
           + +   L+L+E   ER   LES   N  +K E+        ++ R LE+      D
Sbjct: 193 EKS--LLELVESWLERTPGLESTGFNFWIKYEK--------SVNRYLEDLAKQAAD 238


>gnl|CDD|145900 pfam02994, Transposase_22, L1 transposable element. 
          Length = 370

 Score = 28.9 bits (64), Expect = 5.5
 Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 2/107 (1%)

Query: 312 EKFEKHLESIGAQVQDIHSDVREQQKPAKPRLDLIEKIGERLGNLESHVANIMLKLEERQ 371
           EK  K L  +  + +++  + R  +K        IE   +R G +++   N + ++EER 
Sbjct: 94  EKCLKELMELKKKARELKEECRSIKKEHMETTLDIENQKKRQGVVDTSFTNRIQEMEERI 153

Query: 372 NTSEDPA--ILRNLENQLLNIKDLVTNDLKDNRTLREPDQHVFGLED 416
           + +ED    I R  +      K L  N  +    +R P+  + G+ +
Sbjct: 154 SGAEDSIEEIKRTGKFNEKRKKRLEQNIQEIQDYVRRPNLRIIGVPE 200


>gnl|CDD|147394 pfam05185, PRMT5, PRMT5 arginine-N-methyltransferase.  The human
           homologue of yeast Skb1 (Shk1 kinase-binding protein 1)
           is PRMT5, an arginine-N-methyltransferase. These
           proteins appear to be key mitotic regulators. They play
           a role in Jak signalling in higher eukaryotes.
          Length = 447

 Score = 28.8 bits (65), Expect = 5.5
 Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 10/60 (16%)

Query: 295 AVEKNRKYAQSYTQKFVEKFEKHLESIGAQVQDIHSDVREQQKPAKPRLDLIEKIGERLG 354
           AVEKN   A    QK V       E  G +V  I SD+RE + P K   D++  + E LG
Sbjct: 219 AVEKNP-NAVVTLQKRVNF-----EEWGDKVTLISSDMREWKGPEKA--DIL--VSELLG 268


>gnl|CDD|38808 KOG3602, KOG3602, KOG3602, WD40 repeat-containing protein [General
           function prediction only].
          Length = 1459

 Score = 28.5 bits (63), Expect = 5.7
 Identities = 34/187 (18%), Positives = 60/187 (32%), Gaps = 29/187 (15%)

Query: 355 NLESHVANIMLKLEERQNTSEDPAILRNLENQLLNIKDLVTNDLKDNRTLREPDQHVFGL 414
           +L  H+ +   KL E    S   A       + L ++       KD+ +  E   H    
Sbjct: 197 SLGRHLDSEAQKLLETLRDSRSLAKGEEENAEDLTVE-WTGRRGKDSESHPEYLNHFLQE 255

Query: 415 EDY-IVKTAHKTARSMLNSINKSQ-------DIERILQKNMHEYCKEIQKVHAEQTIK-- 464
               ++          +N  N+S        +I R +     E+  +  K++A Q +   
Sbjct: 256 FYKSLLSLVDSAMEKEVNMQNQSDPEVLQHLEICREIFFGRPEFILKA-KLYALQPLNLR 314

Query: 465 -------------NFTTLYDMLVKIFQKLGTLTEEGRRLPYSTSNDLSPNHQASHKYSEL 511
                             Y  L + F+ LGTL +   ++    S+      Q    Y   
Sbjct: 315 GCGKTSLLLAIAAFLPEWYPHLRRYFRFLGTLPDSSIQVAELYSSCA----QIDKNYLVP 370

Query: 512 FKNLCSD 518
            KNL + 
Sbjct: 371 IKNLPTC 377


>gnl|CDD|35383 KOG0161, KOG0161, KOG0161, Myosin class II heavy chain
            [Cytoskeleton].
          Length = 1930

 Score = 28.7 bits (64), Expect = 6.3
 Identities = 41/231 (17%), Positives = 83/231 (35%), Gaps = 16/231 (6%)

Query: 271  KLLNEKISTKGVLSFDTKLSEIKTAVEKNRKYAQ-----SYTQKFVEKFEKHLESIGAQV 325
            +  +E + +K  L  D    EI+     N+            Q  +++ ++ LE      
Sbjct: 1597 RSKSEALRSKKKLEGDINELEIQLDH-ANKANEDAQKQLKKLQAQLKELQRELEDAQRAR 1655

Query: 326  QDIHSDVREQQKPAKPRLDLIEKIGERLGNLESHVANIMLKLEERQNTSEDPAILRNLEN 385
            +++   + E ++        +E++ E+L  LE       L+LEE    +E    L    +
Sbjct: 1656 EELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEE---LAERVNELNAQNS 1712

Query: 386  QLLNIKDLVTNDLKD-NRTLREPDQHVFGLEDYIVKT---AHKTARSMLNSINKSQDIER 441
             L   K  +  ++      L E    +   E+   K    A K A  +      SQ +ER
Sbjct: 1713 SLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQETSQKLER 1772

Query: 442  I---LQKNMHEYCKEIQKVHAEQTIKNFTTLYDMLVKIFQKLGTLTEEGRR 489
            +   L++ + +    + +            +  +  +I +    L  E RR
Sbjct: 1773 LKKSLERQVKDLQLRLDEAEQAALKGGKKQIAKLEARIRELESELEGEQRR 1823


>gnl|CDD|147776 pfam05804, KAP, Kinesin-associated protein (KAP).  This family
           consists of several eukaryotic kinesin-associated (KAP)
           proteins. Kinesins are intracellular multimeric
           transport motor proteins that move cellular cargo on
           microtubule tracks. It has been shown that the sea
           urchin KRP85/95 holoenzyme associates with a KAP115
           non-motor protein, forming a heterotrimeric complex in
           vitro, called the Kinesin-II.
          Length = 708

 Score = 28.3 bits (63), Expect = 6.4
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 11/53 (20%)

Query: 240 FDKNNNGFAASGIDEKLVSIVNSTHNLL---SLLKLLNEKISTKGVLSFDTKL 289
           FD+N N    +GI EKL+ +    H  L   +L  L N        LSFDT L
Sbjct: 316 FDENKNEMEENGIIEKLLKLFPCQHEDLLNITLRLLFN--------LSFDTGL 360


>gnl|CDD|33502 COG3707, AmiR, Response regulator with putative antiterminator
           output domain [Signal transduction mechanisms].
          Length = 194

 Score = 27.9 bits (62), Expect = 9.4
 Identities = 11/41 (26%), Positives = 17/41 (41%)

Query: 340 KPRLDLIEKIGERLGNLESHVANIMLKLEERQNTSEDPAIL 380
            P LD+     E    L   +A +  +LEER+       +L
Sbjct: 114 LPILDVAVSRFEERRALRRELAKLKDRLEERKVIERAKGLL 154


>gnl|CDD|35702 KOG0481, KOG0481, KOG0481, DNA replication licensing factor, MCM5
           component [Replication, recombination and repair].
          Length = 729

 Score = 28.0 bits (62), Expect = 9.6
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 3/75 (4%)

Query: 10  HSSCAVSKKSELENPSGMTDIHRIKNWIQKVIGEEKNKP-LSQEQKEKIKILWSSLRKIA 68
           H S A ++    E   G   I ++K +IQ      K  P LS E  EK+   + ++RK  
Sbjct: 531 HVSKANAQTDSQEENEGEIPIEKLKRYIQYC--RLKCGPRLSAEAAEKLSSRYVTMRKGV 588

Query: 69  GSNEEVSDPNLNSPI 83
             +E+ SD   + PI
Sbjct: 589 RQHEQDSDKRSSIPI 603


>gnl|CDD|176521 cd08579, GDPD_memb_like, Glycerophosphodiester phosphodiesterase
           domain of uncharacterized bacterial
           glycerophosphodiester phosphodiesterases.  This
           subfamily corresponds to the glycerophosphodiester
           phosphodiesterase domain (GDPD) present in
           uncharacterized bacterial glycerophosphodiester
           phosphodiesterases. In addition to a C-terminal GDPD
           domain, most members in this family have an N-terminus
           that functions as a membrane anchor.
          Length = 220

 Score = 27.9 bits (63), Expect = 9.9
 Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 19/100 (19%)

Query: 260 VNSTHNLLSLLKLLNEKISTKG----VLSFDTKLS-----------EIKTAVEKNRKYAQ 304
           VN     L+L +L    I   G    + S D  L+           E+K     +   + 
Sbjct: 56  VNKKVWDLTLEELKKLTIGENGHGAKIPSLDEYLALAKGLKQKLLIELKP----HGHDSP 111

Query: 305 SYTQKFVEKFEKHLESIGAQVQDIHSDVREQQKPAKPRLD 344
              +KFV+ ++++L     QV  +   V E+ K   P++ 
Sbjct: 112 DLVEKFVKLYKQNLIENQHQVHSLDYRVIEKVKKLDPKIK 151


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.312    0.129    0.357 

Gapped
Lambda     K      H
   0.267   0.0615    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 7,552,320
Number of extensions: 386163
Number of successful extensions: 1013
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1009
Number of HSP's successfully gapped: 59
Length of query: 673
Length of database: 6,263,737
Length adjustment: 100
Effective length of query: 573
Effective length of database: 4,102,837
Effective search space: 2350925601
Effective search space used: 2350925601
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (27.5 bits)