BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780463|ref|YP_003064876.1| putative peptidoglycan binding protein [Candidatus Liberibacter asiaticus str. psy62] (673 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780463|ref|YP_003064876.1| putative peptidoglycan binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 673 Score = 1382 bits (3576), Expect = 0.0, Method: Compositional matrix adjust. Identities = 673/673 (100%), Positives = 673/673 (100%) Query: 1 MSGLTPLKDHSSCAVSKKSELENPSGMTDIHRIKNWIQKVIGEEKNKPLSQEQKEKIKIL 60 MSGLTPLKDHSSCAVSKKSELENPSGMTDIHRIKNWIQKVIGEEKNKPLSQEQKEKIKIL Sbjct: 1 MSGLTPLKDHSSCAVSKKSELENPSGMTDIHRIKNWIQKVIGEEKNKPLSQEQKEKIKIL 60 Query: 61 WSSLRKIAGSNEEVSDPNLNSPIQREDDCNVVRTNDDTKQIFNLLRKKLSNPHLQQHIES 120 WSSLRKIAGSNEEVSDPNLNSPIQREDDCNVVRTNDDTKQIFNLLRKKLSNPHLQQHIES Sbjct: 61 WSSLRKIAGSNEEVSDPNLNSPIQREDDCNVVRTNDDTKQIFNLLRKKLSNPHLQQHIES 120 Query: 121 KTEQNGGIDPNLQSESLPTIPGTAIREDDDIDIFHSDMAKLSKSITELCRIISIPGIKKS 180 KTEQNGGIDPNLQSESLPTIPGTAIREDDDIDIFHSDMAKLSKSITELCRIISIPGIKKS Sbjct: 121 KTEQNGGIDPNLQSESLPTIPGTAIREDDDIDIFHSDMAKLSKSITELCRIISIPGIKKS 180 Query: 181 HSQLEKILSKMENIAKECSLQSVENNWKGALQHFKKLDFKNLHEKINTLSCQMNVMQCTF 240 HSQLEKILSKMENIAKECSLQSVENNWKGALQHFKKLDFKNLHEKINTLSCQMNVMQCTF Sbjct: 181 HSQLEKILSKMENIAKECSLQSVENNWKGALQHFKKLDFKNLHEKINTLSCQMNVMQCTF 240 Query: 241 DKNNNGFAASGIDEKLVSIVNSTHNLLSLLKLLNEKISTKGVLSFDTKLSEIKTAVEKNR 300 DKNNNGFAASGIDEKLVSIVNSTHNLLSLLKLLNEKISTKGVLSFDTKLSEIKTAVEKNR Sbjct: 241 DKNNNGFAASGIDEKLVSIVNSTHNLLSLLKLLNEKISTKGVLSFDTKLSEIKTAVEKNR 300 Query: 301 KYAQSYTQKFVEKFEKHLESIGAQVQDIHSDVREQQKPAKPRLDLIEKIGERLGNLESHV 360 KYAQSYTQKFVEKFEKHLESIGAQVQDIHSDVREQQKPAKPRLDLIEKIGERLGNLESHV Sbjct: 301 KYAQSYTQKFVEKFEKHLESIGAQVQDIHSDVREQQKPAKPRLDLIEKIGERLGNLESHV 360 Query: 361 ANIMLKLEERQNTSEDPAILRNLENQLLNIKDLVTNDLKDNRTLREPDQHVFGLEDYIVK 420 ANIMLKLEERQNTSEDPAILRNLENQLLNIKDLVTNDLKDNRTLREPDQHVFGLEDYIVK Sbjct: 361 ANIMLKLEERQNTSEDPAILRNLENQLLNIKDLVTNDLKDNRTLREPDQHVFGLEDYIVK 420 Query: 421 TAHKTARSMLNSINKSQDIERILQKNMHEYCKEIQKVHAEQTIKNFTTLYDMLVKIFQKL 480 TAHKTARSMLNSINKSQDIERILQKNMHEYCKEIQKVHAEQTIKNFTTLYDMLVKIFQKL Sbjct: 421 TAHKTARSMLNSINKSQDIERILQKNMHEYCKEIQKVHAEQTIKNFTTLYDMLVKIFQKL 480 Query: 481 GTLTEEGRRLPYSTSNDLSPNHQASHKYSELFKNLCSDNTPSVNQTRVESNTYNEQYPIL 540 GTLTEEGRRLPYSTSNDLSPNHQASHKYSELFKNLCSDNTPSVNQTRVESNTYNEQYPIL Sbjct: 481 GTLTEEGRRLPYSTSNDLSPNHQASHKYSELFKNLCSDNTPSVNQTRVESNTYNEQYPIL 540 Query: 541 SSNNSLDQHNHPHDISETQGDSVYDQKKREKEFNSPHDIQHMLERVSLIQQGILEDDNTI 600 SSNNSLDQHNHPHDISETQGDSVYDQKKREKEFNSPHDIQHMLERVSLIQQGILEDDNTI Sbjct: 541 SSNNSLDQHNHPHDISETQGDSVYDQKKREKEFNSPHDIQHMLERVSLIQQGILEDDNTI 600 Query: 601 PTYISAVRRATSTSTMRSNDLKEKNIGKKIWNFTKYITSNQWVTSIMLVATLLVSSFLLS 660 PTYISAVRRATSTSTMRSNDLKEKNIGKKIWNFTKYITSNQWVTSIMLVATLLVSSFLLS Sbjct: 601 PTYISAVRRATSTSTMRSNDLKEKNIGKKIWNFTKYITSNQWVTSIMLVATLLVSSFLLS 660 Query: 661 PALLVRETFFFKS 673 PALLVRETFFFKS Sbjct: 661 PALLVRETFFFKS 673 >gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus str. psy62] Length = 1828 Score = 31.2 bits (69), Expect = 0.055, Method: Compositional matrix adjust. Identities = 52/225 (23%), Positives = 91/225 (40%), Gaps = 37/225 (16%) Query: 47 KPLSQEQKEKIKILWSSLRKIAGSNEEVSDPNLNSPIQREDDC------NVVRTNDDTKQ 100 + L+QE I + S I+G E+S ++N IQ+ C N+V D+ + Sbjct: 1055 QTLAQELVSVIGSMSQSTTDISG-KLEISLDSVNQKIQK---CREFFGDNIVAFMDEISK 1110 Query: 101 IFNLLRKKLSNPHLQQHIESKTEQNGGIDPNLQSESLPTIPGTAI--------------- 145 + + K++S Q I + QN + N +S + G + Sbjct: 1111 VMEISEKRISQR--TQEISQQLLQNNDVITNQIIDSTSRVRGEIVDISNKFIETSRVLEQ 1168 Query: 146 REDDDIDIFHSDMAKLSKSITELCRIISIPGIKKSHSQLEKILSKMENIAKECSLQSVEN 205 RE+ FHS + S +I+ + ++ + SH+ + L +E E ++ V + Sbjct: 1169 REEK----FHSALDSFSDNISRI--LLDVDHTISSHTNESRSL--IEQRIHE--VKDVLS 1218 Query: 206 NWKGALQHFKKLDFKNLHEKINTLSCQMNVMQCTFDKNNNGFAAS 250 N AL+ + FK E + M M+ FDKNN+ S Sbjct: 1219 NLDRALESYGSTVFKQFKEYVQCFETNMENMESLFDKNNDSMLLS 1263 >gi|254780778|ref|YP_003065191.1| elongation factor Ts [Candidatus Liberibacter asiaticus str. psy62] Length = 296 Score = 26.2 bits (56), Expect = 1.9, Method: Compositional matrix adjust. Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 3/56 (5%) Query: 421 TAHKTARSMLNSINKSQD---IERILQKNMHEYCKEIQKVHAEQTIKNFTTLYDML 473 A+K A M +++ + +E+I+ M +CKE +H + T+ D L Sbjct: 213 VANKRAHYMTEALDSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDPSKTVSDFL 268 >gi|254780140|ref|YP_003064553.1| putative ABC transporter, substrate-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 452 Score = 24.3 bits (51), Expect = 6.5, Method: Compositional matrix adjust. Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 11/105 (10%) Query: 295 AVEKNRKYAQSYTQKFVEKFEKHLESIGAQVQD----IHSDVREQQKPAKPRLDLIEKIG 350 A E+N++ + T + F + E+ ++ D I + +KP + IE I Sbjct: 128 ATERNQRAMITATPSGINYFISNAENTSKKISDSSRHIQKIIENIEKPLTTTIANIETIS 187 Query: 351 ERLGNLESHVANIMLKLEERQNTSEDPAILRNLENQLLNIKDLVT 395 L N SH+ +M + ++S+ +N I DL+T Sbjct: 188 TVLANNISHIDKMMHTTQVTPHSSDS-------KNTFNTITDLIT 225 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.312 0.129 0.357 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 432,927 Number of Sequences: 1233 Number of extensions: 18461 Number of successful extensions: 50 Number of sequences better than 100.0: 12 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 43 Number of HSP's gapped (non-prelim): 14 length of query: 673 length of database: 328,796 effective HSP length: 80 effective length of query: 593 effective length of database: 230,156 effective search space: 136482508 effective search space used: 136482508 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 41 (20.4 bits)