BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780463|ref|YP_003064876.1| putative peptidoglycan binding
protein [Candidatus Liberibacter asiaticus str. psy62]
         (673 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780463|ref|YP_003064876.1| putative peptidoglycan binding protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 673

 Score = 1382 bits (3576), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 673/673 (100%), Positives = 673/673 (100%)

Query: 1   MSGLTPLKDHSSCAVSKKSELENPSGMTDIHRIKNWIQKVIGEEKNKPLSQEQKEKIKIL 60
           MSGLTPLKDHSSCAVSKKSELENPSGMTDIHRIKNWIQKVIGEEKNKPLSQEQKEKIKIL
Sbjct: 1   MSGLTPLKDHSSCAVSKKSELENPSGMTDIHRIKNWIQKVIGEEKNKPLSQEQKEKIKIL 60

Query: 61  WSSLRKIAGSNEEVSDPNLNSPIQREDDCNVVRTNDDTKQIFNLLRKKLSNPHLQQHIES 120
           WSSLRKIAGSNEEVSDPNLNSPIQREDDCNVVRTNDDTKQIFNLLRKKLSNPHLQQHIES
Sbjct: 61  WSSLRKIAGSNEEVSDPNLNSPIQREDDCNVVRTNDDTKQIFNLLRKKLSNPHLQQHIES 120

Query: 121 KTEQNGGIDPNLQSESLPTIPGTAIREDDDIDIFHSDMAKLSKSITELCRIISIPGIKKS 180
           KTEQNGGIDPNLQSESLPTIPGTAIREDDDIDIFHSDMAKLSKSITELCRIISIPGIKKS
Sbjct: 121 KTEQNGGIDPNLQSESLPTIPGTAIREDDDIDIFHSDMAKLSKSITELCRIISIPGIKKS 180

Query: 181 HSQLEKILSKMENIAKECSLQSVENNWKGALQHFKKLDFKNLHEKINTLSCQMNVMQCTF 240
           HSQLEKILSKMENIAKECSLQSVENNWKGALQHFKKLDFKNLHEKINTLSCQMNVMQCTF
Sbjct: 181 HSQLEKILSKMENIAKECSLQSVENNWKGALQHFKKLDFKNLHEKINTLSCQMNVMQCTF 240

Query: 241 DKNNNGFAASGIDEKLVSIVNSTHNLLSLLKLLNEKISTKGVLSFDTKLSEIKTAVEKNR 300
           DKNNNGFAASGIDEKLVSIVNSTHNLLSLLKLLNEKISTKGVLSFDTKLSEIKTAVEKNR
Sbjct: 241 DKNNNGFAASGIDEKLVSIVNSTHNLLSLLKLLNEKISTKGVLSFDTKLSEIKTAVEKNR 300

Query: 301 KYAQSYTQKFVEKFEKHLESIGAQVQDIHSDVREQQKPAKPRLDLIEKIGERLGNLESHV 360
           KYAQSYTQKFVEKFEKHLESIGAQVQDIHSDVREQQKPAKPRLDLIEKIGERLGNLESHV
Sbjct: 301 KYAQSYTQKFVEKFEKHLESIGAQVQDIHSDVREQQKPAKPRLDLIEKIGERLGNLESHV 360

Query: 361 ANIMLKLEERQNTSEDPAILRNLENQLLNIKDLVTNDLKDNRTLREPDQHVFGLEDYIVK 420
           ANIMLKLEERQNTSEDPAILRNLENQLLNIKDLVTNDLKDNRTLREPDQHVFGLEDYIVK
Sbjct: 361 ANIMLKLEERQNTSEDPAILRNLENQLLNIKDLVTNDLKDNRTLREPDQHVFGLEDYIVK 420

Query: 421 TAHKTARSMLNSINKSQDIERILQKNMHEYCKEIQKVHAEQTIKNFTTLYDMLVKIFQKL 480
           TAHKTARSMLNSINKSQDIERILQKNMHEYCKEIQKVHAEQTIKNFTTLYDMLVKIFQKL
Sbjct: 421 TAHKTARSMLNSINKSQDIERILQKNMHEYCKEIQKVHAEQTIKNFTTLYDMLVKIFQKL 480

Query: 481 GTLTEEGRRLPYSTSNDLSPNHQASHKYSELFKNLCSDNTPSVNQTRVESNTYNEQYPIL 540
           GTLTEEGRRLPYSTSNDLSPNHQASHKYSELFKNLCSDNTPSVNQTRVESNTYNEQYPIL
Sbjct: 481 GTLTEEGRRLPYSTSNDLSPNHQASHKYSELFKNLCSDNTPSVNQTRVESNTYNEQYPIL 540

Query: 541 SSNNSLDQHNHPHDISETQGDSVYDQKKREKEFNSPHDIQHMLERVSLIQQGILEDDNTI 600
           SSNNSLDQHNHPHDISETQGDSVYDQKKREKEFNSPHDIQHMLERVSLIQQGILEDDNTI
Sbjct: 541 SSNNSLDQHNHPHDISETQGDSVYDQKKREKEFNSPHDIQHMLERVSLIQQGILEDDNTI 600

Query: 601 PTYISAVRRATSTSTMRSNDLKEKNIGKKIWNFTKYITSNQWVTSIMLVATLLVSSFLLS 660
           PTYISAVRRATSTSTMRSNDLKEKNIGKKIWNFTKYITSNQWVTSIMLVATLLVSSFLLS
Sbjct: 601 PTYISAVRRATSTSTMRSNDLKEKNIGKKIWNFTKYITSNQWVTSIMLVATLLVSSFLLS 660

Query: 661 PALLVRETFFFKS 673
           PALLVRETFFFKS
Sbjct: 661 PALLVRETFFFKS 673


>gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus str.
            psy62]
          Length = 1828

 Score = 31.2 bits (69), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 91/225 (40%), Gaps = 37/225 (16%)

Query: 47   KPLSQEQKEKIKILWSSLRKIAGSNEEVSDPNLNSPIQREDDC------NVVRTNDDTKQ 100
            + L+QE    I  +  S   I+G   E+S  ++N  IQ+   C      N+V   D+  +
Sbjct: 1055 QTLAQELVSVIGSMSQSTTDISG-KLEISLDSVNQKIQK---CREFFGDNIVAFMDEISK 1110

Query: 101  IFNLLRKKLSNPHLQQHIESKTEQNGGIDPNLQSESLPTIPGTAI--------------- 145
            +  +  K++S     Q I  +  QN  +  N   +S   + G  +               
Sbjct: 1111 VMEISEKRISQR--TQEISQQLLQNNDVITNQIIDSTSRVRGEIVDISNKFIETSRVLEQ 1168

Query: 146  REDDDIDIFHSDMAKLSKSITELCRIISIPGIKKSHSQLEKILSKMENIAKECSLQSVEN 205
            RE+     FHS +   S +I+ +  ++ +     SH+   + L  +E    E  ++ V +
Sbjct: 1169 REEK----FHSALDSFSDNISRI--LLDVDHTISSHTNESRSL--IEQRIHE--VKDVLS 1218

Query: 206  NWKGALQHFKKLDFKNLHEKINTLSCQMNVMQCTFDKNNNGFAAS 250
            N   AL+ +    FK   E +      M  M+  FDKNN+    S
Sbjct: 1219 NLDRALESYGSTVFKQFKEYVQCFETNMENMESLFDKNNDSMLLS 1263


>gi|254780778|ref|YP_003065191.1| elongation factor Ts [Candidatus Liberibacter asiaticus str. psy62]
          Length = 296

 Score = 26.2 bits (56), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 421 TAHKTARSMLNSINKSQD---IERILQKNMHEYCKEIQKVHAEQTIKNFTTLYDML 473
            A+K A  M  +++  +    +E+I+   M  +CKE   +H    +    T+ D L
Sbjct: 213 VANKRAHYMTEALDSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDPSKTVSDFL 268


>gi|254780140|ref|YP_003064553.1| putative ABC transporter, substrate-binding protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 452

 Score = 24.3 bits (51), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 11/105 (10%)

Query: 295 AVEKNRKYAQSYTQKFVEKFEKHLESIGAQVQD----IHSDVREQQKPAKPRLDLIEKIG 350
           A E+N++   + T   +  F  + E+   ++ D    I   +   +KP    +  IE I 
Sbjct: 128 ATERNQRAMITATPSGINYFISNAENTSKKISDSSRHIQKIIENIEKPLTTTIANIETIS 187

Query: 351 ERLGNLESHVANIMLKLEERQNTSEDPAILRNLENQLLNIKDLVT 395
             L N  SH+  +M   +   ++S+        +N    I DL+T
Sbjct: 188 TVLANNISHIDKMMHTTQVTPHSSDS-------KNTFNTITDLIT 225


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.312    0.129    0.357 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 432,927
Number of Sequences: 1233
Number of extensions: 18461
Number of successful extensions: 50
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 43
Number of HSP's gapped (non-prelim): 14
length of query: 673
length of database: 328,796
effective HSP length: 80
effective length of query: 593
effective length of database: 230,156
effective search space: 136482508
effective search space used: 136482508
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 41 (20.4 bits)