HHsearch results for GI: 254780464 and protein with PDBid: 3ih6_A
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, structural genomics, PSI-2, protein structure initiative; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=99.95 E-value=1.7e-27 Score=201.99 Aligned_cols=185 Identities=16% Similarity=0.126 Sum_probs=160.4
Q ss_pred CCCCCCCEEEEECCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCE
Q ss_conf 22332210233036843210230100001352113568998777624876532222000268621013332221012201
Q gi|254780464|r 218 KPAVYVGGEYIQKRDLAEEHMMLGFNGCAYQSRDFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHHENFSDNGVL 297 (424)
Q Consensus 218 ~p~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~al~ll~~iLg~g~sSrL~~~lRe~~glaY~v~s~~~~~~~~g~~ 297 (424)
+|.......++..++.++.++.++|++|+..++|++++.|++.+||+|++|||+++|||+ |++|+++++...+.+.|+|
T Consensus 7 EP~q~~~r~~~v~~~~~~~~v~~~~~~p~~~~~d~~al~vl~~iLg~g~sSrL~~~L~e~-~l~~~~~a~~~~~~~~g~f 85 (197)
T 3ih6_A 7 EPVQDGERSVTLRRAGGTPLVAAMYHLPAAGSPDFVGLDLAATILADTPSSRLYHALVPT-KLASGVFGFTMDQLDPGLA 85 (197)
T ss_dssp CC-------------CCSCEEEEEEECCCTTSTTHHHHHHHHHHHHSSTTSHHHHHHTTT-TSCSEEEEEEETTSSSCEE
T ss_pred CCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHCCC-CCEEEEEECCCCCCCCCEE
T ss_conf 989988679998278760024778627999992099999999997799846899982646-6436887415655678338
Q ss_pred EEEEECCCC-HHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 344425830-247778778999985314-899899999999999999851389899999999999968984798999998
Q gi|254780464|r 298 YIASATAKE-NIMALTSSIVEVVQSLLE-NIEQREIDKECAKIHAKLIKSQERSYLRALEISKQVMFCGSILCSEKIIDT 375 (424)
Q Consensus 298 ~i~~~~~~~-~~~~~~~~i~~~i~~l~~-~i~~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~ 375 (424)
.+++.+.++ +.+++.+.+.+++.++++ +++++||+++|+.++.++....+++..++..++.... .|++....++.+.
T Consensus 86 ~i~~~~~~~~~~~~~~~~i~~~l~~l~~~~it~eeL~~aK~~~~~~~~~~~~s~~~~a~~l~~~~~-~g~~~~~~~~~~~ 164 (197)
T 3ih6_A 86 MFGAQLQPGMDQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADPEKVGVALSEAIA-SGDWRLFFLQRDR 164 (197)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHH-TTCTTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-CCCHHHHHHHHHH
T ss_conf 999970655469999999999999876424529999999999999898863799999999999997-5996569999999
Q ss_pred HHCCCHHHHHHHHHHHCCCCC-EEEEEECC
Q ss_conf 872798999999998627787-79998166
Q gi|254780464|r 376 ISAITCEDIVGVAKKIFSSTP-TLAILGPP 404 (424)
Q Consensus 376 i~~vt~~di~~~~~~~l~~~~-~i~~vgp~ 404 (424)
|++||++||++++++||.++. ++.++.|.
T Consensus 165 i~~vT~~dv~~~a~~yl~~~~~~v~~~~P~ 194 (197)
T 3ih6_A 165 VREAKLDDVQRAAVAYLVRSNRTEGRYIPT 194 (197)
T ss_dssp HHTCCHHHHHHHHHHHSSGGGCEEEEECC-
T ss_pred HHCCCHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 987899999999999678017289999328