Query gi|254780464|ref|YP_003064877.1| M16 family peptidase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 424 No_of_seqs 186 out of 5740 Neff 9.6 Searched_HMMs 23785 Date Mon May 30 11:40:13 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780464.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1hr6_A Alpha-MPP, mitochondria 100.0 0 0 567.6 34.6 415 2-418 5-450 (475) 2 1pp9_A Ubiquinol-cytochrome C 100.0 0 0 561.4 32.7 417 2-419 13-442 (446) 3 1pp9_B Ubiquinol-cytochrome C 100.0 0 0 542.0 32.3 409 1-414 22-439 (439) 4 1hr6_B Beta-MPP, mitochondrial 100.0 0 0 536.0 35.5 418 2-420 6-443 (443) 5 3hdi_A Processing protease; CA 100.0 0 0 535.6 33.2 406 3-410 2-409 (421) 6 3cx5_A Cytochrome B-C1 complex 100.0 0 0 530.2 29.0 410 4-422 2-430 (431) 7 3eoq_A Putative zinc protease; 100.0 0 0 490.5 32.4 401 3-405 2-405 (406) 8 3gwb_A Peptidase M16 inactive 100.0 0 0 488.0 29.5 410 1-411 12-428 (434) 9 3d3y_A Uncharacterized protein 100.0 0 0 444.7 28.9 398 2-405 2-423 (425) 10 3go9_A Insulinase family prote 100.0 0 0 433.0 28.4 416 2-422 25-465 (492) 11 3cww_A Insulysin, insulin-degr 100.0 0 0 428.9 25.8 402 2-405 34-456 (990) 12 1q2l_A Protease III; hydrolase 100.0 0 0 427.4 25.3 403 2-405 20-440 (939) 13 3cx5_B Cytochrome B-C1 complex 100.0 0 0 408.7 13.5 350 12-414 1-352 (352) 14 2fge_A Atprep2;, zinc metallop 100.0 0 0 364.9 20.0 393 8-404 43-483 (995) 15 2fge_A Atprep2;, zinc metallop 100.0 2.8E-39 1.2E-43 280.9 25.5 391 4-404 554-975 (995) 16 3cww_A Insulysin, insulin-degr 100.0 2.4E-34 1E-38 247.8 20.1 390 5-406 521-935 (990) 17 1q2l_A Protease III; hydrolase 100.0 8.1E-32 3.4E-36 230.9 24.9 382 3-396 500-894 (939) 18 3ih6_A Putative zinc protease; 100.0 1.7E-27 6.9E-32 202.0 15.5 185 218-404 7-194 (197) 19 1pp9_A Ubiquinol-cytochrome C 98.5 4.3E-06 1.8E-10 58.4 13.2 165 229-402 28-201 (446) 20 1hr6_B Beta-MPP, mitochondrial 98.4 6.3E-06 2.7E-10 57.3 12.7 173 222-403 13-196 (443) 21 1hr6_A Alpha-MPP, mitochondria 98.4 7.4E-06 3.1E-10 56.8 11.9 128 64-193 290-438 (475) 22 3hdi_A Processing protease; CA 98.3 9.9E-05 4.1E-09 49.3 16.4 163 232-402 20-190 (421) 23 3gwb_A Peptidase M16 inactive 98.3 2.4E-05 1E-09 53.3 12.5 173 223-402 21-203 (434) 24 3cx5_A Cytochrome B-C1 complex 98.3 4E-05 1.7E-09 51.9 13.4 105 298-402 77-186 (431) 25 3cx5_B Cytochrome B-C1 complex 98.2 1.6E-05 6.8E-10 54.6 11.1 163 230-402 7-175 (352) 26 1pp9_B Ubiquinol-cytochrome C 98.2 3.2E-05 1.4E-09 52.5 11.9 164 230-402 39-209 (439) 27 3d3y_A Uncharacterized protein 98.2 7E-05 3E-09 50.2 13.1 179 234-420 23-220 (425) 28 3ih6_A Putative zinc protease; 98.1 6.3E-07 2.7E-11 64.0 0.7 171 11-190 12-192 (197) 29 3eoq_A Putative zinc protease; 98.0 1.7E-05 7.2E-10 54.4 7.8 101 298-402 85-189 (406) 30 3go9_A Insulinase family prote 97.3 3.4E-05 1.4E-09 52.4 0.3 35 252-286 289-323 (492) 31 3h14_A Aminotransferase, class 40.7 12 0.0005 15.2 2.1 16 169-184 75-94 (391) 32 1c7n_A Cystalysin; transferase 38.8 15 0.00062 14.6 3.2 17 168-184 72-92 (399) 33 1d2f_A MALY protein; aminotran 35.9 16 0.00069 14.3 2.9 22 168-190 70-95 (390) 34 3dzz_A Putative pyridoxal 5'-p 35.4 15 0.00062 14.6 1.9 22 168-190 68-93 (391) 35 1qap_A Quinolinic acid phospho 31.3 14 0.00061 14.6 1.3 13 378-390 260-272 (296) 36 3gee_A MNME, tRNA modification 30.6 20 0.00083 13.7 11.3 19 304-322 381-399 (476) 37 3ihj_A Alanine aminotransferas 29.5 21 0.00087 13.6 1.9 18 106-123 97-114 (498) 38 3paj_A Nicotinate-nucleotide p 27.0 14 0.0006 14.6 0.6 13 378-390 283-295 (320) 39 1kl7_A Threonine synthase; thr 25.7 24 0.001 13.1 4.1 29 180-210 201-230 (514) 40 1x1o_A Nicotinate-nucleotide p 23.9 18 0.00076 14.0 0.7 13 378-390 248-260 (286) 41 3l0g_A Nicotinate-nucleotide p 23.2 21 0.00088 13.5 0.9 16 255-270 160-175 (300) 42 1zav_U 50S ribosomal protein L 21.9 28 0.0012 12.7 3.3 24 368-391 2-25 (30) 43 3gnn_A Nicotinate-nucleotide p 21.1 23 0.00095 13.3 0.7 15 255-269 162-176 (298) 44 1o4u_A Type II quinolic acid p 20.4 20 0.00084 13.7 0.3 15 255-269 145-159 (285) No 1 >1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Probab=100.00 E-value=0 Score=567.56 Aligned_cols=415 Identities=21% Similarity=0.328 Sum_probs=382.3 Q ss_pred CEEEEECCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCEEEEEECC Q ss_conf 61899879871999985899879999998331144888898348999989733568889889999999708767997532 Q gi|254780464|r 2 NLRISKTSSGITVITEVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEIEKVGGDINAYTSL 81 (424) Q Consensus 2 ~~~~~~L~NGl~v~~~~~~~~~~~i~~~~~~Gs~~e~~~~~G~ah~lehl~~~gt~~~~~~~~~~~l~~~G~~~na~t~~ 81 (424) +++++||+||+||++++.+.|.+++++++++||++|++++.|+||++|||+|+||++++..++.+.++.+|+.+||+|++ T Consensus 5 ~~~~~~L~NGl~V~~~~~~~~~~~~~l~v~~Gs~~E~~~~~G~ahlleh~~f~GT~~~~~~~l~~~l~~~G~~~na~t~~ 84 (475) T 1hr6_A 5 NFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTSSR 84 (475) T ss_dssp CCEEEECTTSCEEEEESCCCSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEEEEECS T ss_pred CEEEEECCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCEEEEEECC T ss_conf 73799989999899997899989999997400278897986399999999738999999999999999829989999863 Q ss_pred CEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHH Q ss_conf 23799961266565210012223221035662001124556766665113321110000001222222222222221034 Q gi|254780464|r 82 EHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPE 161 (424) Q Consensus 82 d~~~~~~~~~~~~~~~~l~ll~~~~~~p~~~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~f~~~~~~~~~~g~~~ 161 (424) |+|+|++++++++++.+|+++++++.+|.|++++|+++|+++++|+++..++|...+.+.+.+.+|+++||+++++|+.+ T Consensus 85 d~t~y~~~~~~~~l~~~l~ll~d~~~~p~~~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~ 164 (475) T 1hr6_A 85 ENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPRG 164 (475) T ss_dssp SCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCGG T ss_pred CEEEEEEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCHH T ss_conf 72999999778999999999999975888788999999999999988774184878999988887337876788878988 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEE------ECCCCCC Q ss_conf 4200016677642011245663000002545512211221101235877778866422332210233------0368432 Q gi|254780464|r 162 TISSFTPEKIISFVSRNYTADRMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKESMKPAVYVGGEYI------QKRDLAE 235 (424) Q Consensus 162 ~i~~lt~~~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~p~~~~~~~~~------~~~~~~~ 235 (424) +|++++.++|++||++||+|+|++|+| |++++++++++++++||+|+....+....+..+.+++.. ...+..+ T Consensus 165 ~i~~it~~~l~~~~~~~y~p~n~~lvi-~~~~~~~~~~li~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (475) T 1hr6_A 165 LIPSISKYYLLDYRNKFYTPENTVAAF-VGVPHEKALELTGKYLGDWQSTHPPITKKVAQYTGGESCIPPAPVFGNLPEL 243 (475) T ss_dssp GGGGCCHHHHHHHHHHHCCGGGEEEEE-ESSCHHHHHHHHHHHHTTCCCCCCCCCCCCCCCCCEEEEECCCCCCSSSCCC T ss_pred HHCCCCHHHHHHHHHHHCCCCCCCEEC-CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 707899999999987403875320004-6677999999999983447667888776654346875444320024676030 Q ss_pred CEEEECCCCCCCCCCHHHHHHHHHHHHHCC-----------CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECC Q ss_conf 102301000013521135689987776248-----------765322220002686210133322210122013444258 Q gi|254780464|r 236 EHMMLGFNGCAYQSRDFYLTNILASILGDG-----------MSSRLFQEVREKRGLCYSISAHHENFSDNGVLYIASATA 304 (424) Q Consensus 236 ~~i~~~~~~~~~~~~d~~al~ll~~iLg~g-----------~sSrL~~~lRe~~glaY~v~s~~~~~~~~g~~~i~~~~~ 304 (424) +++.++|+++++.++|++++.+++.+||++ ++|||++++|+++|++|++++++..+.+.|+|++++.|. T Consensus 244 ~~v~~~~~~~~~~~~d~~~l~vl~~iLgg~~s~~~~~~~~g~~srL~~~lre~~gl~ys~~s~~~~~~~~g~f~i~~~~~ 323 (475) T 1hr6_A 244 FHIQIGFEGLPIDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFGISLSCI 323 (475) T ss_dssp EEEEEEEECCCTTCTTHHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEECSSCEEEEEEEEEC T ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEC T ss_conf 35676304565344008999999998668720212013331125999976651474125776303446776346567656 Q ss_pred CCHHHHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC Q ss_conf 3024777877899998531----489989999999999999985138989999999999996898479899999887279 Q gi|254780464|r 305 KENIMALTSSIVEVVQSLL----ENIEQREIDKECAKIHAKLIKSQERSYLRALEISKQVMFCGSILCSEKIIDTISAIT 380 (424) Q Consensus 305 ~~~~~~~~~~i~~~i~~l~----~~i~~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~i~~vt 380 (424) |++..++++.+.+++.++. .+++++||++||+.++.++..+.|++..++..++++++.++++.+++++.+.|++|| T Consensus 324 ~~~~~~~v~~i~~el~~~~~~~~~~it~~eL~raK~~l~~~~~~~~e~~~~~~~~i~~~~l~~~~~~~~~~~~~~i~~VT 403 (475) T 1hr6_A 324 PQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIEDLK 403 (475) T ss_dssp GGGHHHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCCCHHHHHHHHHTCC T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC T ss_conf 77589999999999999998477899899999999999999998658999999999999996799899999999997879 Q ss_pred HHHHHHHHHHHCCC----------CCEEEEEECCCCCCCCHHHHHHHH Q ss_conf 89999999986277----------877999816601089989999988 Q gi|254780464|r 381 CEDIVGVAKKIFSS----------TPTLAILGPPMDHVPTTSELIHAL 418 (424) Q Consensus 381 ~~di~~~~~~~l~~----------~~~i~~vgp~~~~~P~~~~l~~~l 418 (424) ++||++++++||.+ +++++++| +...+|+.+++.... T Consensus 404 ~~dv~~~a~~~~~~~~~~~~~g~~~~t~~~~g-~~~~~~~~~~~~~~~ 450 (475) T 1hr6_A 404 PDDISRVAEMIFTGNVNNAGNGKGRATVVMQG-DRGSFGDVENVLKAY 450 (475) T ss_dssp HHHHHHHHHHHHTTCCCCTTCCCCCCEEEEES-CGGGGCCHHHHHHHT T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCEEEEEC-CCCCCCCHHHHHHHH T ss_conf 99999999997278973888438874399955-512240499999983 No 2 >1pp9_A Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein, cytochrome B; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* 3bcc_A* ... Probab=100.00 E-value=0 Score=561.44 Aligned_cols=417 Identities=21% Similarity=0.377 Sum_probs=388.1 Q ss_pred CEEEEECCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCEEEEEECC Q ss_conf 61899879871999985899879999998331144888898348999989733568889889999999708767997532 Q gi|254780464|r 2 NLRISKTSSGITVITEVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEIEKVGGDINAYTSL 81 (424) Q Consensus 2 ~~~~~~L~NGl~v~~~~~~~~~~~i~~~~~~Gs~~e~~~~~G~ah~lehl~~~gt~~~~~~~~~~~l~~~G~~~na~t~~ 81 (424) ++|+++|+||+||++++.+.|.++++++|++||++|++++.|+||++|||+|+||++++..+|.+.++.+|+.+||+|++ T Consensus 13 ~~~~~~L~NGl~v~~~~~~~~~v~i~~~~~~Gs~~E~~~~~Glahllehm~f~Gt~~~~~~~~~~~l~~~G~~~na~t~~ 92 (446) T 1pp9_A 13 ETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAYSTR 92 (446) T ss_dssp CCEEEECTTCCEEEEEECSCSEEEEEEEESCSGGGCCTTTTTHHHHHHHHTTSCBSSSTTTHHHHHHHHTTCEEEEEECS T ss_pred CCEEEECCCCCEEEEECCCCCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEECC T ss_conf 75799999998899976999979999998004556699974399999999728989999899999999719979999862 Q ss_pred CEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHH Q ss_conf 23799961266565210012223221035662001124556766665113321110000001222222222222221034 Q gi|254780464|r 82 EHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPE 161 (424) Q Consensus 82 d~~~~~~~~~~~~~~~~l~ll~~~~~~p~~~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~f~~~~~~~~~~g~~~ 161 (424) |+++|++++++++++.+|+++++++.+|.|++++|+++|+++++|++...++|...+.+.+.+.+|+++||+++++|+.+ T Consensus 93 d~t~~~~~~~~~~~~~~l~ll~~~~~~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~ 172 (446) T 1pp9_A 93 EHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSE 172 (446) T ss_dssp SCEEEEEEEEGGGHHHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCHH T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHH T ss_conf 60899999775777776899999976678897998889999887652023581889999999986378974566867999 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCC---CCCCCCCEE-EEECCCCCCCE Q ss_conf 42000166776420112456630000025455122112211012358777788664---223322102-33036843210 Q gi|254780464|r 162 TISSFTPEKIISFVSRNYTADRMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKESM---KPAVYVGGE-YIQKRDLAEEH 237 (424) Q Consensus 162 ~i~~lt~~~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~---~p~~~~~~~-~~~~~~~~~~~ 237 (424) +|++++.++|++||++||+|+||+|+|+||+|+++++++++++|+.||........ .|....... .....+.++.+ T Consensus 173 ~i~~~t~~~l~~f~~~~y~p~n~~i~i~Gd~d~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (446) T 1pp9_A 173 NVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPCRFTGSQICHREDGLPLAH 252 (446) T ss_dssp HHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCSCCCSSCCCCCCCCCCCCEEEEEEETTSSSEE T ss_pred HHHHCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHH T ss_conf 99748999999999871698735999736830777899999985258888887777888864347761167458865302 Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHHH--------CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHH Q ss_conf 23010000135211356899877762--------4876532222000268621013332221012201344425830247 Q gi|254780464|r 238 MMLGFNGCAYQSRDFYLTNILASILG--------DGMSSRLFQEVREKRGLCYSISAHHENFSDNGVLYIASATAKENIM 309 (424) Q Consensus 238 i~~~~~~~~~~~~d~~al~ll~~iLg--------~g~sSrL~~~lRe~~glaY~v~s~~~~~~~~g~~~i~~~~~~~~~~ 309 (424) +.++|++++..++|++++.+++.+|| ++++|||++++|+++|++|+++++...+.+.|+|.+++.+.+++.. T Consensus 253 ~~~~~~~~~~~~~d~~~l~vl~~iLg~~~~~~~~~~~~s~l~~~~re~~gl~y~~~s~~~~~~~~g~~~i~~~~~~~~~~ 332 (446) T 1pp9_A 253 VAIAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQSFQTFNICYADTGLLGAHFVCDHMSID 332 (446) T ss_dssp EEEEEEECCTTCTHHHHHHHHHHHHCEEETTCSCGGGCSSHHHHHHHHHTCCSEEEEEEEECSSCEEEEEEEEECTTSHH T ss_pred HHEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEEECCCCCHH T ss_conf 21001356742124799999999863122102456643058899998617732788852146777259999963864088 Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHH Q ss_conf 77877899998531489989999999999999985138989999999999996898479899999887279899999999 Q gi|254780464|r 310 ALTSSIVEVVQSLLENIEQREIDKECAKIHAKLIKSQERSYLRALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVAK 389 (424) Q Consensus 310 ~~~~~i~~~i~~l~~~i~~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~i~~vt~~di~~~~~ 389 (424) ++++.+.+++..+.++++++||+++|+.++.++....+++..++..++++.+.++++.+++++.+.|++||++||+++++ T Consensus 333 ~~~~~i~~~~~~l~~~~~~~el~~ak~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~e~~~~i~~VT~~dv~~~a~ 412 (446) T 1pp9_A 333 DMMFVLQGQWMRLCTSATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCS 412 (446) T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHTSSCCCHHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHH T ss_conf 89999999999972479999999999999999999666999999999999997699889999999997889999999999 Q ss_pred HHCCCC-CEEEEEECCCCCCCCHHHHHHHHH Q ss_conf 862778-779998166010899899999884 Q gi|254780464|r 390 KIFSST-PTLAILGPPMDHVPTTSELIHALE 419 (424) Q Consensus 390 ~~l~~~-~~i~~vgp~~~~~P~~~~l~~~l~ 419 (424) +||.++ .+++++| |.+.+|+.++|++.+. T Consensus 413 ~~~~~~~~~~~v~g-p~~~~p~~~~i~~~~~ 442 (446) T 1pp9_A 413 KYFYDQCPAVAGFG-PIEQLPDYNRIRSGMF 442 (446) T ss_dssp HHTTTCCCEEEEEE-SCTTSCCHHHHHHTTC T ss_pred HHCCCCCCEEEEEC-CHHHCCCHHHHHHHHH T ss_conf 86588997899988-7253879999984403 No 3 >1pp9_B Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein, cytochrome B; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* 1bcc_B* ... Probab=100.00 E-value=0 Score=541.98 Aligned_cols=409 Identities=20% Similarity=0.290 Sum_probs=371.9 Q ss_pred CCEEEEECCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCEEEEEEC Q ss_conf 96189987987199998589987999999833114488889834899998973356888988999999970876799753 Q gi|254780464|r 1 MNLRISKTSSGITVITEVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEIEKVGGDINAYTS 80 (424) Q Consensus 1 ~~~~~~~L~NGl~v~~~~~~~~~~~i~~~~~~Gs~~e~~~~~G~ah~lehl~~~gt~~~~~~~~~~~l~~~G~~~na~t~ 80 (424) .++++++|+|||||++.+++.|+++++++|++||++|++++.|+||++|||+|+||++++..+|.+.++.+|+.+||+|+ T Consensus 22 ~~~~~~~L~NGl~v~~~~~~~p~~~i~l~v~~Gs~~E~~~~~G~ahllehl~~~Gt~~~~~~~i~~~~~~~G~~~na~t~ 101 (439) T 1pp9_B 22 QDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTST 101 (439) T ss_dssp CCCEEEECTTSCEEEEECCCCSEEEEEEEESCSGGGCCTTSTTHHHHHHHTTTSCBSSSCHHHHHHHHHHTTCEEEEEEC T ss_pred CCEEEEECCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCEEEEEEC T ss_conf 87279997999889998589987999999821237889797649999999984799988999999999983998999983 Q ss_pred CCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHH Q ss_conf 22379996126656521001222322103566200112455676666511332111000000122222222222222103 Q gi|254780464|r 81 LEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKP 160 (424) Q Consensus 81 ~d~~~~~~~~~~~~~~~~l~ll~~~~~~p~~~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~f~~~~~~~~~~g~~ 160 (424) +|+|+|+++|++++++.+|+++++++.+|.|++++++++|+.+++|++...++|...+++.+++.+|+ ++|+++++|+. T Consensus 102 ~~~t~y~~~~~~~~~~~~l~ll~~~~~~p~~~~~~~~~ek~~i~~e~~~~~~~p~~~~~~~l~~~~f~-~~~~~~~~g~~ 180 (439) T 1pp9_B 102 RENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYR-NALANSLYCPD 180 (439) T ss_dssp SSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHBS-SGGGSCSSCCG T ss_pred CCEEEEEEEECHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCCCCCCCCH T ss_conf 57189999974631799999997321376103999999998887876664048288889999998343-55688745676 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEE Q ss_conf 44200016677642011245663000002545512211221101235877778866422332210233036843210230 Q gi|254780464|r 161 ETISSFTPEKIISFVSRNYTADRMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKESMKPAVYVGGEYIQKRDLAEEHMML 240 (424) Q Consensus 161 ~~i~~lt~~~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~ 240 (424) ++|++++.++|++||++||+|+||+|++.|+. ++..+.+.+.|+.++........ +..+.+.+.....+..+.++.+ T Consensus 181 ~~i~~lt~~~l~~f~~~~y~p~n~~iv~~~~~--~~~~~~l~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 257 (439) T 1pp9_B 181 YRIGKVTPVELHDYVQNHFTSARMALIGLGVS--HPVLKQVAEQFLNIRGGLGLSGA-KAKYHGGEIREQNGDSLVHAAL 257 (439) T ss_dssp GGTTTCCHHHHHHHHHHHCSGGGEEEEEESSC--HHHHHHHHHHHCCCCCCC-CCCC-CCCBCCEEEEEECCCSEEEEEE T ss_pred HHHCCCCHHHHHHHHHHHCCCCCEEEECCCCC--HHHHHHHHHHHCCCCCCCCCCCC-CCCCCCCEEEECCCCCCEEEEE T ss_conf 66243689999999985058676376547884--89999999985376334577875-5577786442027864025652 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCC--------CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHH Q ss_conf 1000013521135689987776248--------76532222000268621013332221012201344425830247778 Q gi|254780464|r 241 GFNGCAYQSRDFYLTNILASILGDG--------MSSRLFQEVREKRGLCYSISAHHENFSDNGVLYIASATAKENIMALT 312 (424) Q Consensus 241 ~~~~~~~~~~d~~al~ll~~iLg~g--------~sSrL~~~lRe~~glaY~v~s~~~~~~~~g~~~i~~~~~~~~~~~~~ 312 (424) +++.+++.++|++++.+++.+||++ ++|+|++++|+++|++|++++++..+.+.|+|.+++.|++++..+++ T Consensus 258 ~~~~~~~~~~d~~~~~~~~~~Lg~~~~~~~~~~~~s~L~~~lre~~gl~y~v~s~~~~~~~~g~~~i~~~~~~~~~~~~~ 337 (439) T 1pp9_B 258 VAESAAIGSAEANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAASAGDVI 337 (439) T ss_dssp EEECCCTTSHHHHHHHHHHHHHCCSCSBTTCCCTTCHHHHHHHHHCCSCEEEEEEEEEETTEEEEEEEEEEEGGGHHHHH T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEEEEECCCCCHHHHH T ss_conf 01345666401689999999862751232246543077877643036420100124423568448999954731067889 Q ss_pred HHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHH Q ss_conf 778999985314-8998999999999999998513898999999999999689847989999988727989999999986 Q gi|254780464|r 313 SSIVEVVQSLLE-NIEQREIDKECAKIHAKLIKSQERSYLRALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVAKKI 391 (424) Q Consensus 313 ~~i~~~i~~l~~-~i~~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~i~~vt~~di~~~~~~~ 391 (424) +.+.+++.++.+ +++++||+++|+.++.++..+.+++..++..++++++.++++.+++++.+.|++||++||++++++| T Consensus 338 ~~i~~~i~~l~~~~it~~el~~aK~~l~~~~~~~~e~~~~~a~~l~~~~l~~~~~~~~~~~~~~i~~vT~~dv~~~a~~~ 417 (439) T 1pp9_B 338 KAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADADVINAAKKF 417 (439) T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTCCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 99999999998679999999999999999999967899999999999999779989999999999678999999999998 Q ss_pred CCCCCEEEEEECCCCCCCCHHHH Q ss_conf 27787799981660108998999 Q gi|254780464|r 392 FSSTPTLAILGPPMDHVPTTSEL 414 (424) Q Consensus 392 l~~~~~i~~vgp~~~~~P~~~~l 414 (424) |+++++++++| |..++|+.++| T Consensus 418 l~~~~~v~v~G-~~~~~p~~~~~ 439 (439) T 1pp9_B 418 VSGRKSMAASG-NLGHTPFIDEL 439 (439) T ss_dssp HHSCEEEEEEE-CGGGCCCGGGC T ss_pred HCCCCEEEEEC-CCCCCCCHHHC T ss_conf 25898899988-77568891129 No 4 >1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Probab=100.00 E-value=0 Score=536.03 Aligned_cols=418 Identities=30% Similarity=0.495 Sum_probs=380.7 Q ss_pred CEEEEECCCCCEEEEECCC-CCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCEEEEEEC Q ss_conf 6189987987199998589-987999999833114488889834899998973356888988999999970876799753 Q gi|254780464|r 2 NLRISKTSSGITVITEVMP-IDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEIEKVGGDINAYTS 80 (424) Q Consensus 2 ~~~~~~L~NGl~v~~~~~~-~~~~~i~~~~~~Gs~~e~~~~~G~ah~lehl~~~gt~~~~~~~~~~~l~~~G~~~na~t~ 80 (424) .+|+++|+||+||++.+++ .|.++++++|++||++|++++.|+||++|||+|+||++++..++.+.++.+|+.+|++|+ T Consensus 6 ~~~~~~L~NGl~v~~~~~~~~~~v~i~~~~~~Gs~~e~~~~~G~ahlleh~~~~Gt~~~~~~~~~~~~~~~g~~~na~t~ 85 (443) T 1hr6_B 6 GTRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQQGIELEIENIGSHLNAYTS 85 (443) T ss_dssp CCEEEECTTSCEEEEEECSSCSEEEEEEEEECSGGGCCTTTTTHHHHHHHHTTSBBSSCBHHHHHHHHHHTTCEEEEEEC T ss_pred CCEEEECCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCEEEEEEC T ss_conf 86699979998899999899987999999770467779898609999999981889899999999999970986899985 Q ss_pred CCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHH Q ss_conf 22379996126656521001222322103566200112455676666511332111000000122222222222222103 Q gi|254780464|r 81 LEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKP 160 (424) Q Consensus 81 ~d~~~~~~~~~~~~~~~~l~ll~~~~~~p~~~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~f~~~~~~~~~~g~~ 160 (424) .|.|.|++++++++++.+|+++++++.+|.|++++|+++|+.+++|+++..++|...+.+.+.+.+|+++||+++++|+. T Consensus 86 ~~~t~~~~~~~~~~l~~~l~ll~~~~~~p~~~~~~~~~~k~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~ 165 (443) T 1hr6_B 86 RENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPI 165 (443) T ss_dssp SSEEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCH T ss_pred CCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH T ss_conf 67089999615888999999999985366789899778888888777765303667899999998369998888884797 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC-CC-----CCCCEEEEECCCCC Q ss_conf 4420001667764201124566300000254551221122110123587777886642-23-----32210233036843 Q gi|254780464|r 161 ETISSFTPEKIISFVSRNYTADRMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKESMK-PA-----VYVGGEYIQKRDLA 234 (424) Q Consensus 161 ~~i~~lt~~~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~-p~-----~~~~~~~~~~~~~~ 234 (424) ++|+++++++|++||++||+|+|++++|+||+++++++++++++||+||.+..+.... |. .......+...+.. T Consensus 166 ~~i~~~~~~~l~~f~~~~y~p~n~~l~i~G~~~~~~~~~~i~~~fg~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (443) T 1hr6_B 166 KNIKSITRTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPRGPLPVFCRGERFIKENTLP 245 (443) T ss_dssp HHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCCCSSCCCTTSCCSSCCCCCCEEEEEECTTCS T ss_pred HHHCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 88540789999999998279230798626880478999999998545887788887777767765334554211357654 Q ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHH---------HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE--EEC Q ss_conf 2102301000013521135689987776---------24876532222000268621013332221012201344--425 Q gi|254780464|r 235 EEHMMLGFNGCAYQSRDFYLTNILASIL---------GDGMSSRLFQEVREKRGLCYSISAHHENFSDNGVLYIA--SAT 303 (424) Q Consensus 235 ~~~i~~~~~~~~~~~~d~~al~ll~~iL---------g~g~sSrL~~~lRe~~glaY~v~s~~~~~~~~g~~~i~--~~~ 303 (424) +..+.++|+++++.++|++++.+++.++ +++++|||++.+|++.|++|++++.+..+.+.|.|+++ +.+ T Consensus 246 ~~~~~~~~~~~~~~~~d~~~~~~l~~i~~~~~~~~~~~~~~~s~L~~~lre~~gl~ys~~~~~~~~~~~g~~~i~~~~~~ 325 (443) T 1hr6_B 246 TTHIAIALEGVSWSAPDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADSGLWGMYIVTDS 325 (443) T ss_dssp EEEEEEEEECCCTTCTTHHHHHHHHHHHCEEETTTBCSSSSCCHHHHHHHSTTCSCSEEEEEEEECSSCEEEEEEEEEET T ss_pred CEEEEEEEECCCCCCHHHHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECC T ss_conf 31567754035568800899999999842001220368885438999877522643232101332124675158874037 Q ss_pred CCCHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHH Q ss_conf 830247778778999985314-8998999999999999998513898999999999999689847989999988727989 Q gi|254780464|r 304 AKENIMALTSSIVEVVQSLLE-NIEQREIDKECAKIHAKLIKSQERSYLRALEISKQVMFCGSILCSEKIIDTISAITCE 382 (424) Q Consensus 304 ~~~~~~~~~~~i~~~i~~l~~-~i~~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~i~~vt~~ 382 (424) .++++.++++.+.++|+++++ +++++||+++|+.++.++....+++..++..++.+.+.++++.+.+++.+.|++||++ T Consensus 326 ~~~~~~~~~~~i~~~i~~l~~~~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~vT~~ 405 (443) T 1hr6_B 326 NEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEVFEQVDKITKD 405 (443) T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTCCHH T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHH T ss_conf 62014678889999999998679889999999999999999976799999999999999679988999999999678999 Q ss_pred HHHHHHHHHCCCCC-EEEEEECCCCCCCCHHHHHHHHHH Q ss_conf 99999998627787-799981660108998999998843 Q gi|254780464|r 383 DIVGVAKKIFSSTP-TLAILGPPMDHVPTTSELIHALEG 420 (424) Q Consensus 383 di~~~~~~~l~~~~-~i~~vgp~~~~~P~~~~l~~~l~~ 420 (424) ||++++++||.+++ +++++| |...+|+.++|++.|+. T Consensus 406 dv~~~a~~~l~~~~~~i~~~G-~~~~~p~~~~l~~~l~~ 443 (443) T 1hr6_B 406 DIIMWANYRLQNKPVSMVALG-NTSTVPNVSYIEEKLNQ 443 (443) T ss_dssp HHHHHHHHHSSSCCEEEEEEE-CGGGCCCHHHHHHHHHC T ss_pred HHHHHHHHHCCCCCEEEEEEC-CCHHCCCHHHHHHHHCC T ss_conf 999999997488983999989-71107599999998568 No 5 >3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Probab=100.00 E-value=0 Score=535.55 Aligned_cols=406 Identities=32% Similarity=0.566 Sum_probs=381.8 Q ss_pred EEEEECCCCCEEEEECCC-CCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCEEEEEECC Q ss_conf 189987987199998589-9879999998331144888898348999989733568889889999999708767997532 Q gi|254780464|r 3 LRISKTSSGITVITEVMP-IDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEIEKVGGDINAYTSL 81 (424) Q Consensus 3 ~~~~~L~NGl~v~~~~~~-~~~~~i~~~~~~Gs~~e~~~~~G~ah~lehl~~~gt~~~~~~~~~~~l~~~G~~~na~t~~ 81 (424) |+.+||+||++|++.+++ .|.++|+++|++||++||+++.|+||++|||+|+||++++..+|.+.++.+|+.+|++|++ T Consensus 2 i~~~tL~NGl~v~~~~~~~~~~v~i~~~~~~Gs~~e~~~~~G~ahllehl~~~gt~~~~~~~l~~~l~~~G~~~~~~t~~ 81 (421) T 3hdi_A 2 INTMTLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIAEFFDSIGGQVNAFTSK 81 (421) T ss_dssp CEEEECTTSCEEEEEECTTCSEEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSBBSSSBHHHHHHHHHTTTSCEEEEECS T ss_pred CEEEECCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEECC T ss_conf 51899499989999998999889999997514777799973499999999708999999899999999729989999868 Q ss_pred CEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHH Q ss_conf 23799961266565210012223221035662001124556766665113321110000001222222222222221034 Q gi|254780464|r 82 EHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPE 161 (424) Q Consensus 82 d~~~~~~~~~~~~~~~~l~ll~~~~~~p~~~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~f~~~~~~~~~~g~~~ 161 (424) |+++|++++++++++.+|+++++++.+|.|+++.++++|+.++++++...++|...+.+.+...+|+++|++++.+|+.+ T Consensus 82 ~~~~~~~~~~~~~l~~~l~ll~~~~~~p~~~~~~~~~ek~~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (421) T 3hdi_A 82 EYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFEEIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGTVE 161 (421) T ss_dssp SCEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTSGGGSCTTCCHH T ss_pred CEEEEEEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC T ss_conf 84899996136678878999998653765335567999999999999886687889999998733799999888778731 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEC Q ss_conf 42000166776420112456630000025455122112211012358777788664223322102330368432102301 Q gi|254780464|r 162 TISSFTPEKIISFVSRNYTADRMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKESMKPAVYVGGEYIQKRDLAEEHMMLG 241 (424) Q Consensus 162 ~i~~lt~~~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~~ 241 (424) .++.++.+++++||++||+|+||+++|+||++++.+ +.+.++|+.|++...+.....+...+.+.+..++.+|+++.++ T Consensus 162 ~~~~~~~~~l~~f~~~~y~~~~~~l~i~Gd~~~~~v-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~i~~~ 240 (421) T 3hdi_A 162 TLNSFNEGMLRHYMDRFYTGDYVVISVAGNVHDELI-DKIKETFSQVKPTTYNYQGEKPMFLPNRIVRKKETEQAHLCLG 240 (421) T ss_dssp HHHHCCHHHHHHHHHHHSSTTTEEEEEEESCCHHHH-HHHHHHTTSSCCCCCCCCCCCCCCCCCEEEEECCCSEEEEEEE T ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHH-HHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEE T ss_conf 014133456899999844843121566174477788-9999985038988778777887678975897689875699999 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHH Q ss_conf 00001352113568998777624876532222000268621013332221012201344425830247778778999985 Q gi|254780464|r 242 FNGCAYQSRDFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHHENFSDNGVLYIASATAKENIMALTSSIVEVVQS 321 (424) Q Consensus 242 ~~~~~~~~~d~~al~ll~~iLg~g~sSrL~~~lRe~~glaY~v~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~i~~ 321 (424) |++++..++|+++++|++.+||++++|||+++||+++|++|+++++...+.+.|.+++++.|.+++..++++.+.++|+. T Consensus 241 ~~~~~~~~~d~~al~vl~~iLg~~~~s~L~~~lRe~~gl~y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~l~~ 320 (421) T 3hdi_A 241 YPGLPIGDKDVYALVLLNNVLGGSMSSRLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAGTGHDQLDDLVYSIQETTSA 320 (421) T ss_dssp EECCCTTCTTHHHHHHHHHHHTSSSSSHHHHHHTTTTCCCSCEEEEEEECSSCEEEEEEEEEEGGGHHHHHHHHHHHHHH T ss_pred EECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHH T ss_conf 84599998169999999998668844589999997328813665321432367741676226862147789999999999 Q ss_pred HCC-CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEE Q ss_conf 314-8998999999999999998513898999999999999689847989999988727989999999986277877999 Q gi|254780464|r 322 LLE-NIEQREIDKECAKIHAKLIKSQERSYLRALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVAKKIFSSTPTLAI 400 (424) Q Consensus 322 l~~-~i~~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~i~~vt~~di~~~~~~~l~~~~~i~~ 400 (424) +++ +++++||+++|+.++.++....+++..++..++.+.++++++.+++++.+.|++||++||++++++||++++++++ T Consensus 321 l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~edv~~~a~~~l~~~~~v~~ 400 (421) T 3hdi_A 321 LAEKGLTEKELENGKEQLKGSLMLSLESTNSRMSRNGKNELLLKKHRSLDEMIEQINAVQKQDVSRLAKILLSASPSISL 400 (421) T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHCCHHHHHHHHHHHTTSCCEEEE T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEE T ss_conf 98679999999999999999999966799999999999999679966799999999778999999999997699988999 Q ss_pred EECCCCCCCC Q ss_conf 8166010899 Q gi|254780464|r 401 LGPPMDHVPT 410 (424) Q Consensus 401 vgp~~~~~P~ 410 (424) +||+.+ +|. T Consensus 401 v~~~~~-~~~ 409 (421) T 3hdi_A 401 INANGE-LPK 409 (421) T ss_dssp EESSCS-CCS T ss_pred EECHHH-CCH T ss_conf 935485-876 No 6 >3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Probab=100.00 E-value=0 Score=530.18 Aligned_cols=410 Identities=20% Similarity=0.279 Sum_probs=365.5 Q ss_pred EEEECCCCCEEEEECCC-CCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCEEEEEECCC Q ss_conf 89987987199998589-98799999983311448888983489999897335688898899999997087679975322 Q gi|254780464|r 4 RISKTSSGITVITEVMP-IDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEIEKVGGDINAYTSLE 82 (424) Q Consensus 4 ~~~~L~NGl~v~~~~~~-~~~~~i~~~~~~Gs~~e~~~~~G~ah~lehl~~~gt~~~~~~~~~~~l~~~G~~~na~t~~d 82 (424) ++|||+||+||++.+++ .|+++++++|++||++|++++.|+||++|||+|+|+. .+..+.+|+.+||+|++| T Consensus 2 ~vt~L~NGl~V~~~~~~~~~~v~i~l~~~~Gs~~E~~~~~G~ahllehm~f~g~~-------~~~~~~~G~~~na~t~~d 74 (431) T 3cx5_A 2 EVTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKEN-------SAVAAKEGLALSSNISRD 74 (431) T ss_dssp CCEEEESSSEEEEEECTTCSSEEEEEEESCCGGGSCTTTTTHHHHHHHHHTSHHH-------HHHHHHTTCEEEEEECSS T ss_pred CEEECCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCC-------HHHHHHHCCEEEEEECCC T ss_conf 6589789888999998999889999997811488898987899999998759980-------699998288789997267 Q ss_pred EEEEEEECCCCCCCCCHHHHHHHHHCCC---CCCCHHHHHHHHHHHHHHHCC-CCCCCCCHHHCCCCCCCCCCCCCCCCC Q ss_conf 3799961266565210012223221035---662001124556766665113-321110000001222222222222221 Q gi|254780464|r 83 HTSYHAWVLKEHVPLALEIIGDMLSNSS---FNPSDIERERNVVLEEIGMSE-DDSWDFLDARFSEMVWKDQIIGRPILG 158 (424) Q Consensus 83 ~~~~~~~~~~~~~~~~l~ll~~~~~~p~---~~~~~~~~ek~~v~~e~~~~~-~~p~~~~~~~~~~~~f~~~~~~~~~~g 158 (424) +|.|++++++++++.+|++|++++.+|. |++++|++||+++++|+++.. ++|...+++.+++.+|++|||++|++| T Consensus 75 ~t~y~~~~~~~~~~~~l~ll~~~~~~p~~~~f~~~~~e~ek~~i~~e~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~G 154 (431) T 3cx5_A 75 FQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATKKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRG 154 (431) T ss_dssp CEEEEEEECSTTHHHHHHHHHHHHHTCSTTTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTTSGGGSCTTC T ss_pred EEEEEEEECHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 27999996777799999999999856034437989999999999999998765225899999999996699988889957 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEE-EECCCCCCCE Q ss_conf 034420001667764201124566300000254551221122110123587777886642233221023-3036843210 Q gi|254780464|r 159 KPETISSFTPEKIISFVSRNYTADRMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKESMKPAVYVGGEY-IQKRDLAEEH 237 (424) Q Consensus 159 ~~~~i~~lt~~~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~ 237 (424) +.++|++++.++|++||++||+|+|++|+|+||+++++++++++++|+.||.+..+....+..+.+++. +...+.+|+. T Consensus 155 ~~~~i~~it~e~l~~f~~~~y~p~n~~l~i~G~i~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~ 234 (431) T 3cx5_A 155 TLESLENLVVADLESFANNHFLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTKPVLKKKAAFLGSEVRLRDDTLPKAW 234 (431) T ss_dssp CHHHHHTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHTTSCCCSSCSCCCCCCCCCCCCCEEEEEECTTSSSEE T ss_pred CHHHHHHCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHE T ss_conf 98997346999999999841488722477348866999999999972789999999988777656762576215540123 Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHCCC---------CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECC-CCH Q ss_conf 23010000135211356899877762487---------65322220002686210133322210122013444258-302 Q gi|254780464|r 238 MMLGFNGCAYQSRDFYLTNILASILGDGM---------SSRLFQEVREKRGLCYSISAHHENFSDNGVLYIASATA-KEN 307 (424) Q Consensus 238 i~~~~~~~~~~~~d~~al~ll~~iLg~g~---------sSrL~~~lRe~~glaY~v~s~~~~~~~~g~~~i~~~~~-~~~ 307 (424) +.++|+++++.++|++++.+++.+||+++ +|||++++||+ |++|+++++...+.+.|.|++++.+. ++. T Consensus 235 i~~~~~~~~~~~~d~~~l~l~~~ilgg~~s~~~~~~l~~srL~~~lre~-~l~y~~~s~~~~~~~~g~~~i~~~~~~~~~ 313 (431) T 3cx5_A 235 ISLAVEGEPVNSPNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQEY-QLCDNFNHFSLSYKDSGLWGFSTATRNVTM 313 (431) T ss_dssp EEEEEECCCTTCTTHHHHHHHHHHHCEEETTCTTGGGSSCTHHHHHHTT-TCCSEEEEEEEECSSCEEEEEEEEESCTTC T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCEEEEEECCCCCC T ss_conf 6641014457870389999999985677522232453165899998751-340000332332257773256540487000 Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHH Q ss_conf 4777877899998531489989999999999999985138--98999999999999689847989999988727989999 Q gi|254780464|r 308 IMALTSSIVEVVQSLLENIEQREIDKECAKIHAKLIKSQE--RSYLRALEISKQVMFCGSILCSEKIIDTISAITCEDIV 385 (424) Q Consensus 308 ~~~~~~~i~~~i~~l~~~i~~~el~~ak~~~~~~~~~~~~--~~~~~a~~l~~~~~~~~~~~~~~~~~~~i~~vt~~di~ 385 (424) ..+++..+.++++.+..+++++||+++|+.++.++....+ ++...+..++.+.+..+.+.+.+++.+.|++||++||+ T Consensus 314 ~~~~~~~i~~~~~~~~~~~~~~el~~aK~~l~~~~~~~~e~~~~~~~~~~l~~~~l~~~~~~~~~e~~~~i~~vT~~dV~ 393 (431) T 3cx5_A 314 IDDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLSLGEAFKKIDAITVKDVK 393 (431) T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHCCHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHH T ss_conf 68999999999998536999999999999999999998467868999999999999679999999999999788999999 Q ss_pred HHHHHHCCCC-CEEEEEECCCCCCCCHHHHHHHHHHHH Q ss_conf 9999862778-779998166010899899999884342 Q gi|254780464|r 386 GVAKKIFSST-PTLAILGPPMDHVPTTSELIHALEGFR 422 (424) Q Consensus 386 ~~~~~~l~~~-~~i~~vgp~~~~~P~~~~l~~~l~~~~ 422 (424) +++++||.++ .+++++| |.+.+|+.+.|++.|..+| T Consensus 394 ~~a~k~l~~~~~~v~~vG-~~~~l~~~~~i~~~~~~~~ 430 (431) T 3cx5_A 394 AWAGKRLWDQDIAIAGTG-QIEGLLDYMRIRSDMSMMR 430 (431) T ss_dssp HHHHHHTTTCCCEEEEEE-SCTTSCCHHHHHHTTSCCC T ss_pred HHHHHHCCCCCCEEEEEC-CHHHCCCHHHHHHHHHHHH T ss_conf 999986688996899985-5253889999984746630 No 7 >3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Probab=100.00 E-value=0 Score=490.48 Aligned_cols=401 Identities=23% Similarity=0.343 Sum_probs=362.7 Q ss_pred EEEEECCCCCEEEEECCC-CCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCEEEEEECC Q ss_conf 189987987199998589-9879999998331144888898348999989733568889889999999708767997532 Q gi|254780464|r 3 LRISKTSSGITVITEVMP-IDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEIEKVGGDINAYTSL 81 (424) Q Consensus 3 ~~~~~L~NGl~v~~~~~~-~~~~~i~~~~~~Gs~~e~~~~~G~ah~lehl~~~gt~~~~~~~~~~~l~~~G~~~na~t~~ 81 (424) +|.++|+||+||++.+.+ .|.+++++++++|+++|++++.|+||++|||+|+||++++..++.+.++.+|+.+|++|++ T Consensus 2 ~~~~~L~NGl~v~~~~~~~~~~v~~~l~~~~Gs~~e~~~~~Glahllehl~f~gt~~~~~~~~~~~l~~~g~~~~~~t~~ 81 (406) T 3eoq_A 2 FREAELRNGLRVIAEVVPGARSVALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDMDALAVNRAFDRMGAQYNAFTSE 81 (406) T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEEESCSGGGSCGGGTTHHHHHHHHHTTCCTTCCHHHHHHHHHHTTCEEEEEECS T ss_pred EEEEEECCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCEEEEEECC T ss_conf 38999089988999997999979999997700378898972299999999728999999899999999809989888758 Q ss_pred CEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHH Q ss_conf 23799961266565210012223221035662001124556766665113321110000001222222222222221034 Q gi|254780464|r 82 EHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPE 161 (424) Q Consensus 82 d~~~~~~~~~~~~~~~~l~ll~~~~~~p~~~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~f~~~~~~~~~~g~~~ 161 (424) ++++|++++++++.+.++.|+. .+.+|.++++.+++++..++.|+.+..++|...+.+.+...+|+++||+++++|+.+ T Consensus 82 ~~~~y~~~~~~~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 160 (406) T 3eoq_A 82 EATVYYGAVLPEFAYDLLGLFA-KLLRPALREEDFQTEKLVILEEIARYQDRPGFMAYEWARARFFQGHPLGNSVLGTRE 160 (406) T ss_dssp SCEEEEEEECGGGHHHHHHHHH-HHTSCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGGGCCSSCCHH T ss_pred CCEEEECCCHHHHHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCHH T ss_conf 7423310100102999999887-641763244668999999998776531580555678999997412877787726899 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCE-EEEECCCCCCCEEEE Q ss_conf 4200016677642011245663000002545512211221101235877778866422332210-233036843210230 Q gi|254780464|r 162 TISSFTPEKIISFVSRNYTADRMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKESMKPAVYVGG-EYIQKRDLAEEHMML 240 (424) Q Consensus 162 ~i~~lt~~~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~i~~ 240 (424) .|++++.+++++||++||+|+|++++|+||+++++++++++++|++||..+.+...++...... ......+..+..+.+ T Consensus 161 ~l~~~~~~~l~~f~~~~~~p~~~~l~i~Gd~~~~~~~~~i~~~f~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (406) T 3eoq_A 161 SITALTREGMAAYHRRRYLPKNMVLAATGRVDFDRLLAEAERLTEAWPEGEAERAYPPLTPAFGVEERPYEKARALYLVA 240 (406) T ss_dssp HHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCCCCCCCCCCCCCEEEEEECTTCSSEEEEE T ss_pred HHHCCCHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEE T ss_conf 98407799999987533687665998305789999999999985317888877778997877652231233222001331 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHH Q ss_conf 10000135211356899877762487653222200026862101333222101220134442583024777877899998 Q gi|254780464|r 241 GFNGCAYQSRDFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHHENFSDNGVLYIASATAKENIMALTSSIVEVVQ 320 (424) Q Consensus 241 ~~~~~~~~~~d~~al~ll~~iLg~g~sSrL~~~lRe~~glaY~v~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~i~ 320 (424) +++++++.+++++++.+++.+||++++|||+++||++ |++|++++....+.+.|.+.+++.|+|++.+++++.+.++++ T Consensus 241 ~~~~~~~~~~~~~~~~~~~~iLg~~~~s~L~~~lr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 319 (406) T 3eoq_A 241 LFPGVAYQEEARFPGQVLAHLLGEEGSGRLHFALVDK-GLAEVASFGLEEADRAGTFHAYVQADPARKGEVLAVLQEELD 319 (406) T ss_dssp EEECCCTTCTTHHHHHHHHHHHHCTTTSHHHHHTTTT-TSEEEEEEEEEECSSCEEEEEEEEECGGGHHHHHHHHHHHHH T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHC-CCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHH T ss_conf 1357763247789999988873698410789999864-884136763123356886123213585036666687999999 Q ss_pred HHCC-CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEE Q ss_conf 5314-899899999999999999851389899999999999968984798999998872798999999998627787799 Q gi|254780464|r 321 SLLE-NIEQREIDKECAKIHAKLIKSQERSYLRALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVAKKIFSSTPTLA 399 (424) Q Consensus 321 ~l~~-~i~~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~i~~vt~~di~~~~~~~l~~~~~i~ 399 (424) ++++ +++++||+++|+.++.++..+.+++..++..++...+.++++.+.+++.+.|++||++||++++++||.++..++ T Consensus 320 ~l~~~~it~~el~~aK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~di~~~a~~~l~~~~~~~ 399 (406) T 3eoq_A 320 RLGREGVGEEEVERAKTPLATGLVFAGETPMQRLFHLGMEYLYTGRYLSLEEVKARVQRVTSREVNALLERGFLEKGLYY 399 (406) T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHCCHHHHHHHHHTTTTTSCEEE T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEE T ss_conf 99865999999999999999999981799999999999999967998889999999976899999999998779898699 Q ss_pred EEECCC Q ss_conf 981660 Q gi|254780464|r 400 ILGPPM 405 (424) Q Consensus 400 ~vgp~~ 405 (424) ++.|.. T Consensus 400 ~vvp~g 405 (406) T 3eoq_A 400 LVLPHG 405 (406) T ss_dssp EEECCC T ss_pred EEECCC T ss_conf 995789 No 8 >3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2; 1.90A {Pseudomonas fluorescens pf-5} Probab=100.00 E-value=0 Score=487.99 Aligned_cols=410 Identities=17% Similarity=0.231 Sum_probs=372.8 Q ss_pred CCEEEEECCCCCEEEEECCC-CCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCEEEEEE Q ss_conf 96189987987199998589-98799999983311448888983489999897335688898899999997087679975 Q gi|254780464|r 1 MNLRISKTSSGITVITEVMP-IDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEIEKVGGDINAYT 79 (424) Q Consensus 1 ~~~~~~~L~NGl~v~~~~~~-~~~~~i~~~~~~Gs~~e~~~~~G~ah~lehl~~~gt~~~~~~~~~~~l~~~G~~~na~t 79 (424) +||+.+||+||++|++.+++ .|.++++++|++|+++|+ ++.|+||++|||+|+||++++..++.+.++.+|+.+|++| T Consensus 12 ~~v~~~~L~NG~~v~~~~~~~~p~v~~~l~~~~Gs~~e~-~~~G~a~lle~ll~~gt~~~~~~~l~~~l~~~g~~~~~~t 90 (434) T 3gwb_A 12 LNVQTWSTAEGAKVLFVEARELPMFDLRLIFAAGSSQDG-NAPGVALLTNAMLNEGVAGKDVGAIAQGFEGLGADFGNGA 90 (434) T ss_dssp CCCEEEECTTCCEEEEEECCSSSEEEEEEEESCSGGGCT-TSTTHHHHHHHHGGGEETTEEHHHHHHHHHTTTCEEEEEE T ss_pred CCCEEEECCCCCEEEEEECCCCCEEEEEEEEEECCCCCC-CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEE T ss_conf 998799989999899999799988999999801367689-7163999999998179899999999999998099777686 Q ss_pred CCCEEEEEEEC--CCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCC Q ss_conf 32237999612--6656521001222322103566200112455676666511332111000000122222222222222 Q gi|254780464|r 80 SLEHTSYHAWV--LKEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPIL 157 (424) Q Consensus 80 ~~d~~~~~~~~--~~~~~~~~l~ll~~~~~~p~~~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~f~~~~~~~~~~ 157 (424) +.|.++|++++ ++++++.+|+++.+++.+|.|++++|+++|+.++++++...++|...+.+.+.+.+|+++|+++++. T Consensus 91 ~~d~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (434) T 3gwb_A 91 YKDMAVASLRSLSAVDKREPALKLFAEVVGKPTFPADSLARIKNQMLAGFEYQKQNPGKLASLELMKRLYGTHPYAHASD 170 (434) T ss_dssp CSSCEEEEEEEECSHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSTTSSCTT T ss_pred CCCEEEEEEEEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 24557999997087899999999999997588888899988899999998755269889999999998257764578887 Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCCEEEEECCCCCCC Q ss_conf 1034420001667764201124566300000254551221122110123587777886642-233221023303684321 Q gi|254780464|r 158 GKPETISSFTPEKIISFVSRNYTADRMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKESMK-PAVYVGGEYIQKRDLAEE 236 (424) Q Consensus 158 g~~~~i~~lt~~~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~ 236 (424) |..+.+++++.+++++||++||+|+||+++|+||+++++++++++++|+.+|..+...... |............+..++ T Consensus 171 ~~~~~l~~~~~e~l~~~~~~~~~~~n~~l~i~Gd~~~~~~~~~i~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~q~ 250 (434) T 3gwb_A 171 GDAKSIPPITLAQLKAFHAKAYAAGNVVIALVGDLSRSDAEAIAAQVSAALPKGPALAKIEQPAEPKASIGHIEFPSSQT 250 (434) T ss_dssp CCTTTTTTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHHHHHHHSCCCCCCCCCCCCCCCCCEEEEEECCSSEE T ss_pred CCHHHHHCCCHHHHHHHHHHCCCHHHEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCC T ss_conf 87133312899999987642368233045655862699999999986422478887677789877664156630342000 Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHH Q ss_conf 0230100001352113568998777624-876532222000268621013332221012201344425830247778778 Q gi|254780464|r 237 HMMLGFNGCAYQSRDFYLTNILASILGD-GMSSRLFQEVREKRGLCYSISAHHENFSDNGVLYIASATAKENIMALTSSI 315 (424) Q Consensus 237 ~i~~~~~~~~~~~~d~~al~ll~~iLg~-g~sSrL~~~lRe~~glaY~v~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~i 315 (424) ++.++|++++..+++.+++.++..+|++ +++|+|++.+|+++|++|++++++..+.+.|.|.+++.+.|++.+++.+.+ T Consensus 251 ~i~~~~~~~~~~~~~~~~~~vl~~~L~g~~~~s~l~~~lre~~gl~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 330 (434) T 3gwb_A 251 SLMLAQLGIDRDDPDYAAVSLGNQILGGGGFGTRLMSEVREKRGLTYGVYSGFTPMQARGPFMINLQTRAEMSEGTLKLV 330 (434) T ss_dssp EEEEEEECCBTTCTTHHHHHHHHHHHHSSSSCSHHHHHHTTTTCCCSCEEEEECCBSSCCEEEEEEEEEGGGHHHHHHHH T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHH T ss_conf 00110024457817779999999864489755188999998628600464125554466118999604530099999999 Q ss_pred HHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCC Q ss_conf 99998531-48998999999999999998513898999999999999689847989999988727989999999986277 Q gi|254780464|r 316 VEVVQSLL-ENIEQREIDKECAKIHAKLIKSQERSYLRALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVAKKIFSS 394 (424) Q Consensus 316 ~~~i~~l~-~~i~~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~i~~vt~~di~~~~~~~l~~ 394 (424) .+++..+. .+++++||+++|+.++.++....+++..++..+....+++.+..+.+++.+.|++||++||++++++||++ T Consensus 331 ~~~l~~l~~~~i~~~el~~aK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~ 410 (434) T 3gwb_A 331 QDVFAEYLKNGPTQKELDDAKRELAGSFPLSTASNADIVGQLGAMGFYNLPLSYLEDFMRQSQELTVEQVKAAMNKHLNV 410 (434) T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHCCHHHHHHHHHHHCCG T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCC T ss_conf 99999997479999999999999999998816999999999999998388920799999999769999999999985897 Q ss_pred -CCEEEEEECCCCCCCCH Q ss_conf -87799981660108998 Q gi|254780464|r 395 -TPTLAILGPPMDHVPTT 411 (424) Q Consensus 395 -~~~i~~vgp~~~~~P~~ 411 (424) +..++++||.....|-. T Consensus 411 ~~~~~vv~gp~~~~~pl~ 428 (434) T 3gwb_A 411 DKMVIVSAGPTVAQKPLE 428 (434) T ss_dssp GGCEEEEEECCCCCCC-- T ss_pred CCEEEEEECCHHHCCCCC T ss_conf 885999987613208852 No 9 >3d3y_A Uncharacterized protein; APC29635, conserved protein, structural genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis V583} Probab=100.00 E-value=0 Score=444.67 Aligned_cols=398 Identities=15% Similarity=0.217 Sum_probs=343.4 Q ss_pred CEEEEECCCCCEEEEECCC-CCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCC-CHHHHHHHHHHH-CCEEEEE Q ss_conf 6189987987199998589-987999999833114488889834899998973356888-988999999970-8767997 Q gi|254780464|r 2 NLRISKTSSGITVITEVMP-IDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKR-TAKEIVEEIEKV-GGDINAY 78 (424) Q Consensus 2 ~~~~~~L~NGl~v~~~~~~-~~~~~i~~~~~~Gs~~e~~~~~G~ah~lehl~~~gt~~~-~~~~~~~~l~~~-G~~~na~ 78 (424) |....+|+||++|++.|++ .+++.|.+.|++|+..|+ .|.+++++||+|+||+++ +..++.+.++.+ |+.+|++ T Consensus 2 ~~~~~~L~NGl~v~~~p~~~~~~~~i~~~~~~~~~~e~---~~~~~ll~~ll~~gt~~~~~~~~l~~~l~~l~G~~~~~~ 78 (425) T 3d3y_A 2 NAMSVQLVKGVNLHVIPTEKYKTVRLLVRFNTRLNHET---ITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIG 78 (425) T ss_dssp CCEEEEEETTEEEEEEECSSCSEEEEEEEEEEECCTTT---HHHHHHHHHHHHHCCSSSCSHHHHHHHHHHTTSCEEEEE T ss_pred CCEEEECCCCCEEEEEECCCCCEEEEEEEEECCCCCCC---CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCEEEEE T ss_conf 84599918994899997798856999999948988542---079999999997023579999999999998639747888 Q ss_pred ECCC----EEEEEEECCCCC-------CCCCHHHHHHHHHCC-----CCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHC Q ss_conf 5322----379996126656-------521001222322103-----566200112455676666511332111000000 Q gi|254780464|r 79 TSLE----HTSYHAWVLKEH-------VPLALEIIGDMLSNS-----SFNPSDIERERNVVLEEIGMSEDDSWDFLDARF 142 (424) Q Consensus 79 t~~d----~~~~~~~~~~~~-------~~~~l~ll~~~~~~p-----~~~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~ 142 (424) |+.+ .++|++++++++ ++.+|+++.+++.+| .|++++|++||+++++|+++..++|...+.+.+ T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~d~l~~p~~~~~~f~~~~~e~ek~~i~~el~~~~~~p~~~~~~~l 158 (425) T 3d3y_A 79 VSKKGNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVEDKQTYASLAL 158 (425) T ss_dssp EEEETTEEEEEEEEEEECGGGCSSCCHHHHHHHHHHHHHHSCSEETTEECHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH T ss_pred EECCCCEEEEEEEEEECCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH T ss_conf 60367517999998861522124557699999999999868676534689999999999999999987459999999999 Q ss_pred CCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCC--CC Q ss_conf 122222-222222222103442000166776420112456630000025455122112211012358777788664--22 Q gi|254780464|r 143 SEMVWK-DQIIGRPILGKPETISSFTPEKIISFVSRNYTADRMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKESM--KP 219 (424) Q Consensus 143 ~~~~f~-~~~~~~~~~g~~~~i~~lt~~~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~--~p 219 (424) .+.+|+ ++|+++|++|+.++|+++++++|++||++||+|+||+|+|+||+++++++++++++|+.++........ .| T Consensus 159 ~~~~~~~~~~~~~~~~G~~e~i~~it~e~l~~fy~~~y~p~n~~l~v~Gd~d~~~v~~~~~~~~~~~~~~~~~~~~~~~p 238 (425) T 3d3y_A 159 QSVYFNQSEDQKIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLFKQLPFTPREEGKAAIFYNQP 238 (425) T ss_dssp HHHHTTTCTTTTSCTTCCHHHHHHCCHHHHHHHHHHHHHHSEEEEEEEESCCHHHHHHHHHTSCCCCCCCCCCCSCCCCC T ss_pred HHHHCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC T ss_conf 99847899988789988999986389999999876234777569999527999999999998408875457877666677 Q ss_pred CCCCCEEEEECCCCCCCEEEECCCCC-CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEE Q ss_conf 33221023303684321023010000-13521135689987776248765322220002686210133322210122013 Q gi|254780464|r 220 AVYVGGEYIQKRDLAEEHMMLGFNGC-AYQSRDFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHHENFSDNGVLY 298 (424) Q Consensus 220 ~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~d~~al~ll~~iLg~g~sSrL~~~lRe~~glaY~v~s~~~~~~~~g~~~ 298 (424) ............+.+++++.++|+.+ .+.+++++++.+++.+||++++|||+++||+++|++|++++.+..+ .|.|. T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vl~~iL~~~~~s~L~~~lRe~~gl~y~v~s~~~~~--~g~~~ 316 (425) T 3d3y_A 239 IRNVIEERTEREVLAQSKLNLAYNTDIYYGDSYYFALQVFNGIFGGFPHSKLFMNVREKEHLAYYASSSIDTF--RGFMT 316 (425) T ss_dssp CCSSCEEEEEEEECSSEEEEEEEECCCCTTSTTHHHHHHHHHHHTTSTTSHHHHHTTTTSCCCSEEEEEEETT--TTEEE T ss_pred CCCCCCEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEEEEEEEEEECC--CCCEE T ss_conf 6567642564267776479998517987787789999999985079725689999988458158862100037--88559 Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH Q ss_conf 44425830247778778999985314-89989999999999999985138989999999999996898479899999887 Q gi|254780464|r 299 IASATAKENIMALTSSIVEVVQSLLE-NIEQREIDKECAKIHAKLIKSQERSYLRALEISKQVMFCGSILCSEKIIDTIS 377 (424) Q Consensus 299 i~~~~~~~~~~~~~~~i~~~i~~l~~-~i~~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~i~ 377 (424) +++.|++++..++++.+.++++.+.+ +++++||+++|+.++.++....+++..++..++.+.+.++++.+.+++.+.|+ T Consensus 317 i~~~~~~~~~~~~~~~i~~~l~~l~~~~is~~el~~aK~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 396 (425) T 3d3y_A 317 VQTGIDGKNRNQVLRLISTELENIRLGKIRELEIEQTKAMLKNQYILALDNAGAWLEKEYLNELMPQTMLTAEEWIARIN 396 (425) T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHSTTSCCCHHHHHHHHH T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH T ss_conf 99733644499999999999999997799999999999999988988258999999999999973899888999999997 Q ss_pred CCCHHHHHHHHHHHCCCCCEEEEEECCC Q ss_conf 2798999999998627787799981660 Q gi|254780464|r 378 AITCEDIVGVAKKIFSSTPTLAILGPPM 405 (424) Q Consensus 378 ~vt~~di~~~~~~~l~~~~~i~~vgp~~ 405 (424) +||++||+++++++.. +...++.|.+. T Consensus 397 ~vT~edv~~~ak~l~~-~~~y~l~g~~~ 423 (425) T 3d3y_A 397 AVTIPEIQEVAKRLEL-QAIFFLEGETE 423 (425) T ss_dssp HCCHHHHHHHHHHCEE-EEEEEEEEECC T ss_pred CCCHHHHHHHHHHCCC-CCEEEEECCCC T ss_conf 8899999999971531-47899958989 No 10 >3go9_A Insulinase family protease; IDP00573, structural genomics, center for structural genomics of infectious diseases, csgid, hydrolase; HET: MSE; 1.62A {Yersinia pestis} Probab=100.00 E-value=0 Score=433.00 Aligned_cols=416 Identities=15% Similarity=0.122 Sum_probs=325.5 Q ss_pred CEEEEECCCCCEEEEECC-CCC--EEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHH----HCCE Q ss_conf 618998798719999858-998--799999983311448888983489999897335688898899999997----0876 Q gi|254780464|r 2 NLRISKTSSGITVITEVM-PID--SAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEIEK----VGGD 74 (424) Q Consensus 2 ~~~~~~L~NGl~v~~~~~-~~~--~~~i~~~~~~Gs~~e~~~~~G~ah~lehl~~~gt~~~~~~~~~~~l~~----~G~~ 74 (424) +++.+||+||++|++.++ ..| .++++++|++||++|++++.|+||++|||+|+||++++..++...++. .|+. T Consensus 25 ~~~~~~L~NGl~v~l~~~~~~p~~~v~~~l~v~~Gs~~E~~~~~GlAhllehm~f~Gt~~~~~~~~~~~~~~~~~~~g~~ 104 (492) T 3go9_A 25 AWQQGKLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLLPRLALMSSASFTPAQLQSLWQQGIDNERPL 104 (492) T ss_dssp TEEEEECTTSCEEEEEECTTSTTSCEEEEEEESCCGGGCCGGGTTHHHHHHHHHHHCCTTCCHHHHHHHHHTCSCSSSCC T ss_pred CCEEEECCCCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC T ss_conf 74799989999899998999985689999997314578899986789999999718888999778999999989853986 Q ss_pred EEEEECCCEEEEEEECCCCC---CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCC Q ss_conf 79975322379996126656---521001222322103566200112455676666511332111000000122222222 Q gi|254780464|r 75 INAYTSLEHTSYHAWVLKEH---VPLALEIIGDMLSNSSFNPSDIERERNVVLEEIGMSEDDSWDFLDARFSEMVWKDQI 151 (424) Q Consensus 75 ~na~t~~d~~~~~~~~~~~~---~~~~l~ll~~~~~~p~~~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~f~~~~ 151 (424) .||+|++|+|.|++++++.+ ++.+|.++++++.+|.|+++++++||+.+++|++...+++...+++. ..++... T Consensus 105 ~nA~T~~d~T~y~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~~~er~~~~~e~~~~~~~~~~~~~~~---~~~~~~~ 181 (492) T 3go9_A 105 PPAITSYDFTLYSLSLPNNRPDLLKDALAWLSDTAGNLAVSEQTVNAALNTATDPIATFPQNIQEPWWRY---RLKGSSL 181 (492) T ss_dssp CSEEECSSCEEEEEEECTTCHHHHHHHHHHHHHHHHCCCCSHHHHHHHHTCSSCCEEESSSCTTCHHHHH---HTTTSTT T ss_pred CCEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCCC T ss_conf 2137658767898047867889999999999876417655899999999888789888888788999865---0168866 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC-C--CCCEEEE Q ss_conf 222222103442000166776420112456630000025455122112211012358777788664223-3--2210233 Q gi|254780464|r 152 IGRPILGKPETISSFTPEKIISFVSRNYTADRMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKESMKPA-V--YVGGEYI 228 (424) Q Consensus 152 ~~~~~~g~~~~i~~lt~~~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~p~-~--~~~~~~~ 228 (424) .|++. +.+.+++++.++|++||++||+|+||+|+|+||+|+++++++++++||+|+.....+...+. . ......+ T Consensus 182 ~~~~~--~~~~i~~~t~e~l~~fy~~~Y~p~n~~lvivGd~d~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~ 259 (492) T 3go9_A 182 IGHDP--GQPVTQPVDVEKLKQFYQQWYTPDAMTLYVVGNVDSRSIAAQISKAFSELKGKRTAPAAVATLAPLPPEPVSL 259 (492) T ss_dssp TTCCT--TCCCCSSCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCSSCCCCCCCCCCCSSCEEE T ss_pred CCCCC--CHHHHCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEE T ss_conf 78997--2454345999999999998476125499996699889999999999716888888998888877888853677 Q ss_pred ECCCCCCCEEEECCCCCCCCCCHHHH--HHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 03684321023010000135211356--8998777624876532222000268621013332221012201344425830 Q gi|254780464|r 229 QKRDLAEEHMMLGFNGCAYQSRDFYL--TNILASILGDGMSSRLFQEVREKRGLCYSISAHHENFSDNGVLYIASATAKE 306 (424) Q Consensus 229 ~~~~~~~~~i~~~~~~~~~~~~d~~a--l~ll~~iLg~g~sSrL~~~lRe~~glaY~v~s~~~~~~~~g~~~i~~~~~~~ 306 (424) ...+..+..+.++|..+....++..+ ..++..++++++++||.+.+|+..+..|++++......+.+.+.++..+.++ T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (492) T 3go9_A 260 MNEQAAQDTLSLMWDTPWHPIQDSMALSRYWRSDLAREALFWHIKQVLEKNNQKNLKLGFDCRVQYQRAQCAIHLNTPVE 339 (492) T ss_dssp EESSCSSEEEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTCEEEEEEEEETTEEEEEEEEEECGG T ss_pred ECCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEEEECCCC T ss_conf 44787745699999768889986999999999864144567789999997406525999851112567149999975875 Q ss_pred HHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHCCCCCCHHHH----HHHH Q ss_conf 247778778999985314-89989999999999999985-----1389899999999999968984798999----9988 Q gi|254780464|r 307 NIMALTSSIVEVVQSLLE-NIEQREIDKECAKIHAKLIK-----SQERSYLRALEISKQVMFCGSILCSEKI----IDTI 376 (424) Q Consensus 307 ~~~~~~~~i~~~i~~l~~-~i~~~el~~ak~~~~~~~~~-----~~~~~~~~a~~l~~~~~~~~~~~~~~~~----~~~i 376 (424) +..++++.+.++++++.+ |++++||+++|+.++..+.. ....+..++..+...+..+......+++ .+.| T Consensus 340 ~~~~~~~~i~~ei~~l~~~Git~~El~~ak~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 419 (492) T 3go9_A 340 NLTANMTFVARELAALRANGLSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRLRSQQSGVVDIAPEQYQKLRQAFL 419 (492) T ss_dssp GHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHHHTCCCBCHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH T ss_conf 49999999999999999769999999999999999999987545202359999999998655897789999999999999 Q ss_pred HCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHH Q ss_conf 7279899999999862778779998166010899899999884342 Q gi|254780464|r 377 SAITCEDIVGVAKKIFSSTPTLAILGPPMDHVPTTSELIHALEGFR 422 (424) Q Consensus 377 ~~vt~~di~~~~~~~l~~~~~i~~vgp~~~~~P~~~~l~~~l~~~~ 422 (424) ++||++||++++++||.++..++++.|+.+.-...+.++..+.... T Consensus 420 ~~vt~edvn~~~k~~l~~~~~~vvv~~~~~~~~~~~~~~~~~~~~~ 465 (492) T 3go9_A 420 SGLTLAELNRELKQQLSQDTTLVLMQPKGEPEVNVKALQEIYNGIM 465 (492) T ss_dssp HHCCHHHHHHHHHHHHTSCCEEEEEEETTSCCCCHHHHHHHHHHHH T ss_pred HHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHH T ss_conf 7399999999999960979759999679976458899999999764 No 11 >3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 2wby_A 2wc0_A 3h44_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A Probab=100.00 E-value=0 Score=428.87 Aligned_cols=402 Identities=18% Similarity=0.153 Sum_probs=325.7 Q ss_pred CEEEEECCCCCEEEEECC-CCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCH-HHHHHHHHHHCCEEEEEE Q ss_conf 618998798719999858-998799999983311448888983489999897335688898-899999997087679975 Q gi|254780464|r 2 NLRISKTSSGITVITEVM-PIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTA-KEIVEEIEKVGGDINAYT 79 (424) Q Consensus 2 ~~~~~~L~NGl~v~~~~~-~~~~~~i~~~~~~Gs~~e~~~~~G~ah~lehl~~~gt~~~~~-~~~~~~l~~~G~~~na~t 79 (424) ++|..||+|||+|++.++ ..+.+++.+.|++||.+||++++|+||+||||+|+||++||. .++.+.++.+||.+||+| T Consensus 34 ~Y~~~~L~NGl~v~li~d~~~~~~~~~l~v~~Gs~~ep~~~~GlAH~lEHm~F~Gs~k~p~~~~~~~~l~~~gg~~NA~T 113 (990) T 3cww_A 34 EYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSNAFT 113 (990) T ss_dssp EEEEEEETTCCEEEEEECTTCSEEEEEEEESCCGGGSCTTSTTHHHHHHHHGGGCBSSSCSTTHHHHHHHTTTCEEEEEE T ss_pred CEEEEECCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCEEEEEE T ss_conf 53789938999999999799987999999760578889989567999999981899999984199999997599278887 Q ss_pred CCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCH Q ss_conf 32237999612665652100122232210356620011245567666651133211100000012222222222222210 Q gi|254780464|r 80 SLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGK 159 (424) Q Consensus 80 ~~d~~~~~~~~~~~~~~~~l~ll~~~~~~p~~~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~f~~~~~~~~~~g~ 159 (424) +.|+|+|++++++++++.+|+++++++.+|.|+++.+++||++|.+|+++..+++..++.+.+...+|++|||+++.+|+ T Consensus 114 ~~d~T~Y~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~E~~~V~~E~~~~~~~~~~~~~~~~~~~~~~~~py~~~~~G~ 193 (990) T 3cww_A 114 SGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGN 193 (990) T ss_dssp CSSCEEEEEEEEGGGHHHHHHHHHGGGTCBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTSCTTSGGGCCCSCC T ss_pred CCCEEEEEEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 68579999997799999999999999857999999999999999999985629869999999999608999888888789 Q ss_pred HHHHHHH-------HHHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC-----CCCCEEE Q ss_conf 3442000-------166776420112456630000025455122112211012358777788664223-----3221023 Q gi|254780464|r 160 PETISSF-------TPEKIISFVSRNYTADRMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKESMKPA-----VYVGGEY 227 (424) Q Consensus 160 ~~~i~~l-------t~~~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~p~-----~~~~~~~ 227 (424) .++|+++ +.++|++||++||+|+||+|+|+||+|++++.++|+++|+.||....+.+..+. ....... T Consensus 194 ~~~l~~~~~~~~~~~~~~l~~Fy~~~Y~p~nm~lvi~G~~~~~~l~~~i~~~F~~i~~~~~~~~~~~~~~~~~~~~~~~~ 273 (990) T 3cww_A 194 KYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQLY 273 (990) T ss_dssp HHHHTHHHHHTTCCHHHHHHHHHHHHCCGGGEEEEEEESSCHHHHHHHHHHHHTTSCCCCCCCCCCCSCSSCGGGSSEEE T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEE T ss_conf 99985110022212899999999983893244999846999999999999984589888999988775555322344215 Q ss_pred EECCCCCCCEEEECCCCCC-CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHH-HHHHHCCCCEEEEEECCC Q ss_conf 3036843210230100001-35211356899877762487653222200026862101333-222101220134442583 Q gi|254780464|r 228 IQKRDLAEEHMMLGFNGCA-YQSRDFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAH-HENFSDNGVLYIASATAK 305 (424) Q Consensus 228 ~~~~~~~~~~i~~~~~~~~-~~~~d~~al~ll~~iLg~g~sSrL~~~lRe~~glaY~v~s~-~~~~~~~g~~~i~~~~~~ 305 (424) .......+..+.+.|+.++ ..+.+..++.+++.+||+++.|+|++.||++ |++.++.+. .....+.+.+.+.+.+.. T Consensus 274 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~L~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~i~lt~ 352 (990) T 3cww_A 274 KIVPIKDIRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGPGSLLSELKSK-GWVNTLVGGQKAGARGFMFFIINVDLTE 352 (990) T ss_dssp EECCSSSCCEEEEEEEECCCGGGTTTCHHHHHHHHHTCCSTTCHHHHHHHT-TSCSCEEEEEEEEETTEEEEEEEEECCH T ss_pred EECCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH-HCCCCCCCCCCCCCCCCCCHHEEEEECC T ss_conf 752555312799999618731036669999999997358730568999984-1753232323431011230003564123 Q ss_pred ---CHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC Q ss_conf ---0247778778999985314-8998999999999999998513-8989999999999996898479899999887279 Q gi|254780464|r 306 ---ENIMALTSSIVEVVQSLLE-NIEQREIDKECAKIHAKLIKSQ-ERSYLRALEISKQVMFCGSILCSEKIIDTISAIT 380 (424) Q Consensus 306 ---~~~~~~~~~i~~~i~~l~~-~i~~~el~~ak~~~~~~~~~~~-~~~~~~a~~l~~~~~~~~~~~~~~~~~~~i~~vt 380 (424) ++..+++..+.+.++.+++ ++++.+++++++.....+.... ..+...+..++....... +...-.....+...+ T Consensus 353 ~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~l~~~~l~~~~~ 431 (990) T 3cww_A 353 EGLLHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAGILHYYP-LEEVLTAEYLLEEFR 431 (990) T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHTTTSC-GGGTTTTTTCCCCCC T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCC T ss_conf 5621099999999999999996597357799988999888887631573667999999972289-154346888987508 Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCC Q ss_conf 8999999998627787799981660 Q gi|254780464|r 381 CEDIVGVAKKIFSSTPTLAILGPPM 405 (424) Q Consensus 381 ~~di~~~~~~~l~~~~~i~~vgp~~ 405 (424) .+.++.+.+.+...+..++++.|.. T Consensus 432 ~~~~~~~l~~l~~~n~~~~~~~~~~ 456 (990) T 3cww_A 432 PDLIEMVLDKLRPENVRVAIVSKSF 456 (990) T ss_dssp HHHHHHHHTTCSGGGCEEEEECGGG T ss_pred HHHHHHHHHHHCCCCCEEEEECCCC T ss_conf 9999999987431141599963576 No 12 >1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Probab=100.00 E-value=0 Score=427.41 Aligned_cols=403 Identities=18% Similarity=0.184 Sum_probs=322.4 Q ss_pred CEEEEECCCCCEEEEECCC-CCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCH-HHHHHHHHHHCCEEEEEE Q ss_conf 6189987987199998589-98799999983311448888983489999897335688898-899999997087679975 Q gi|254780464|r 2 NLRISKTSSGITVITEVMP-IDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTA-KEIVEEIEKVGGDINAYT 79 (424) Q Consensus 2 ~~~~~~L~NGl~v~~~~~~-~~~~~i~~~~~~Gs~~e~~~~~G~ah~lehl~~~gt~~~~~-~~~~~~l~~~G~~~na~t 79 (424) .++..||+|||+|++.+++ .+.+++++++++||.+||++++|+||++|||+|+||++||. .++.+.++.+||.+||+| T Consensus 20 ~y~~~~L~NGl~~~l~~~~~~~~~~~~l~v~~Gs~~ep~~~~GlAH~lEHm~F~Gs~k~p~~~~~~~~l~~~g~~~NA~T 99 (939) T 1q2l_A 20 QYQAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNAST 99 (939) T ss_dssp EEEEEEETTSCEEEEEECTTCSSEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHHHTTTCEEEEEE T ss_pred CEEEEECCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEE T ss_conf 53899958999999999799987999999772568889979757999999980899999976799999998499168897 Q ss_pred CCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCH Q ss_conf 32237999612665652100122232210356620011245567666651133211100000012222222222222210 Q gi|254780464|r 80 SLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGK 159 (424) Q Consensus 80 ~~d~~~~~~~~~~~~~~~~l~ll~~~~~~p~~~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~f~~~~~~~~~~g~ 159 (424) +.|.|+|++++++++++.+|+++++++.+|.|+++.|++||++|.+|++...++|..++.+.+...+|++|||+++++|+ T Consensus 100 ~~d~T~Y~~~~~~~~l~~~l~~~~d~~~~p~~~~~~~~~E~~vV~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~ 179 (939) T 1q2l_A 100 APYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGN 179 (939) T ss_dssp CSSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCSTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSSCTTSGGGSCCSCC T ss_pred CCCEEEEEEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 68748999996789999999999999837999999999999999999986129979999999999707889998899899 Q ss_pred HHHHHHH----HHHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC--CCCCCC---EEEEEC Q ss_conf 3442000----1667764201124566300000254551221122110123587777886642--233221---023303 Q gi|254780464|r 160 PETISSF----TPEKIISFVSRNYTADRMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKESMK--PAVYVG---GEYIQK 230 (424) Q Consensus 160 ~~~i~~l----t~~~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~--p~~~~~---~~~~~~ 230 (424) .++|+.+ ++++|++||++||+|+||+|+|+||+|++++.++|+++|+.||..+.+.+.. |..... ...... T Consensus 180 ~~~l~~~~~~~~~~~l~~Fy~~~Y~p~n~~lvi~Gd~d~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (939) T 1q2l_A 180 LETLSDKPGNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEITVPVVTDAQKGIIIHYV 259 (939) T ss_dssp HHHHSCBTTBCHHHHHHHHHHHHCCTTTCEEEEEESSCHHHHHHHHHHTGGGSCCCCCCCCCCCSCSCCGGGSSEEEEEC T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 85897541133799999999985895356999934533899999999985005677889976666566621246411236 Q ss_pred CCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH--CCCCEEEEEECC---C Q ss_conf 68432102301000013521135689987776248765322220002686210133322210--122013444258---3 Q gi|254780464|r 231 RDLAEEHMMLGFNGCAYQSRDFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHHENFS--DNGVLYIASATA---K 305 (424) Q Consensus 231 ~~~~~~~i~~~~~~~~~~~~d~~al~ll~~iLg~g~sSrL~~~lRe~~glaY~v~s~~~~~~--~~g~~~i~~~~~---~ 305 (424) .+..+..+.++|+.++..+++..+...+...|.++.+++++..++.+.|++|+++++..... ..+.+.+..... . T Consensus 260 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 339 (939) T 1q2l_A 260 PALPRKVLRVEFRIDNNSAKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVEGISANSDPIVNGNSGVLAISASLTDKGL 339 (939) T ss_dssp CSSCCCEEEEEEEEECCGGGGGGCHHHHHHHHHHCCCTTSHHHHHHHTTCEEEEEEEEESSTTSSEEEEEEEEEECHHHH T ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCC T ss_conf 52311089999733885437789999999998379854003999986386127988524223677632555552044452 Q ss_pred CHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHH Q ss_conf 0247778778999985314-89989999999999999985138-989999999999996898479899999887279899 Q gi|254780464|r 306 ENIMALTSSIVEVVQSLLE-NIEQREIDKECAKIHAKLIKSQE-RSYLRALEISKQVMFCGSILCSEKIIDTISAITCED 383 (424) Q Consensus 306 ~~~~~~~~~i~~~i~~l~~-~i~~~el~~ak~~~~~~~~~~~~-~~~~~a~~l~~~~~~~~~~~~~~~~~~~i~~vt~~d 383 (424) ....+++..+.+.+..+.+ ++.++++++.++........... .+...+..++.....+ .+.........+..++.++ T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~ 418 (939) T 1q2l_A 340 ANRDQVVAAIFSYLNLLREKGIDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMIRV-PVEHTLDAVNIADRYDAKA 418 (939) T ss_dssp HTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHTTS-CGGGTTTTTTCCCCCCHHH T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CHHHHHHHHHHHHHCCHHH T ss_conf 209999999999999998667278889999999999898752056256899999998538-9766444778887469999 Q ss_pred HHHHHHHHCCCCCEEEEEECCC Q ss_conf 9999998627787799981660 Q gi|254780464|r 384 IVGVAKKIFSSTPTLAILGPPM 405 (424) Q Consensus 384 i~~~~~~~l~~~~~i~~vgp~~ 405 (424) ++++.+.+...+..++++.|+. T Consensus 419 ~~~~~~~l~~~n~~~~~~~~~~ 440 (939) T 1q2l_A 419 VKERLAMMTPQNARIWYISPKE 440 (939) T ss_dssp HHHHHHHCSGGGCEEEEECTTC T ss_pred HHHHHHHHCCCCEEEEEEECCC T ss_conf 9999997452263899992587 No 13 >3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Probab=100.00 E-value=0 Score=408.70 Aligned_cols=350 Identities=20% Similarity=0.324 Sum_probs=288.8 Q ss_pred CEEEEECCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCEEEEEECCCEEEEEEECC Q ss_conf 19999858998799999983311448888983489999897335688898899999997087679975322379996126 Q gi|254780464|r 12 ITVITEVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEIEKVGGDINAYTSLEHTSYHAWVL 91 (424) Q Consensus 12 l~v~~~~~~~~~~~i~~~~~~Gs~~e~~~~~G~ah~lehl~~~gt~~~~~~~~~~~l~~~G~~~na~t~~d~~~~~~~~~ 91 (424) |||++++.+.|.+++++|+++||++|++ .|+||++|||+|+||++++..+|.+.++.+||.+||+|++|+++|+++++ T Consensus 1 l~v~~~d~~~~~~~~~~~~~~Gs~~E~~--~G~ah~lehm~f~gT~~~s~~~i~~~le~~Gg~~na~t~~d~t~y~~~~~ 78 (352) T 3cx5_B 1 LTVSARDAPTKISTLAVKVHGGSRYATK--DGVAHLLNRFNFQNTNTRSALKLVRESELLGGTFKSTLDREYITLKATFL 78 (352) T ss_dssp CEEEEECCSCSEEEEEEEESCSGGGCSS--TTHHHHHHHHTTSCBSSSCHHHHHHHHHHHTCEEEEEECSSCEEEEEEEE T ss_pred CEEEECCCCCCEEEEEEEEEECCCCCCC--CCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCEEEEEECCCEEEEEEEEC T ss_conf 9899725999869999998121788996--87999999997079899999999999998299899998457289999976 Q ss_pred CCCCCCCHHHHHHHHHCCCCCCCHHH-HHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 65652100122232210356620011-24556766665113321110000001222222222222221034420001667 Q gi|254780464|r 92 KEHVPLALEIIGDMLSNSSFNPSDIE-RERNVVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEK 170 (424) Q Consensus 92 ~~~~~~~l~ll~~~~~~p~~~~~~~~-~ek~~v~~e~~~~~~~p~~~~~~~~~~~~f~~~~~~~~~~g~~~~i~~lt~~~ 170 (424) +++++.+|++|++++.+|.|++++++ .+|.++.+|+++..++|...+.+.+++.+|+ +|+|+|.. .++|+++++++ T Consensus 79 ~~~l~~~l~ll~d~l~~p~f~~~e~~~~~~~~i~~e~~~~~~~p~~~~~~~l~~~~f~-~~lg~~~~--~e~i~~it~~d 155 (352) T 3cx5_B 79 KDDLPYYVNALADVLYKTAFKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAITFR-KGLGNPLL--YDGVERVSLQD 155 (352) T ss_dssp GGGHHHHHHHHHHHHHHBCCCHHHHHHTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTTTSCSS--CCSSSCCCHHH T ss_pred CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-CCCCCCCC--CCCHHCCCHHH T ss_conf 4407999999999864887759999998888889999875327387888899998617-88898677--14231078999 Q ss_pred HHHHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCC-CCCCCCCCEEEEECCCCCCCEEEECCCCCCCCC Q ss_conf 7642011245663000002545512211221101235877778866-422332210233036843210230100001352 Q gi|254780464|r 171 IISFVSRNYTADRMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKES-MKPAVYVGGEYIQKRDLAEEHMMLGFNGCAYQS 249 (424) Q Consensus 171 l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~~~f~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 249 (424) |++||++||+|+||+|+++|+++++.++.+++++|+.||.++.... .+|..+.+.+. ...+..++++.++++ ..+ T Consensus 156 l~~f~~~~y~p~n~vl~~~G~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~g~~---~~~ 231 (352) T 3cx5_B 156 IKDFADKVYTKENLEVSGENVVEADLKRFVDESLLSTLPAGKSLVSKSEPKFFLGEEN-RVRFIGDSVAAIGIP---VNK 231 (352) T ss_dssp HHHHHHHHCCGGGEEEEEESSCHHHHHHHHHHSTTTTSCCCCCCCCCSCCCCCCSCEE-EEECSSSEEEEEEEE---ECT T ss_pred HHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEE-EECCCCCCEEEEECC---CCC T ss_conf 9999996037677799997268899999999997077998998888899976689668-871466127986237---788 Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHH Q ss_conf 11356899877762487653222200026862101333222101220134442583024777877899998531489989 Q gi|254780464|r 250 RDFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHHENFSDNGVLYIASATAKENIMALTSSIVEVVQSLLENIEQR 329 (424) Q Consensus 250 ~d~~al~ll~~iLg~g~sSrL~~~lRe~~glaY~v~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~i~~l~~~i~~~ 329 (424) +|++++.|++.+||++ +|+++||+|+++ ...|++.|+|+|++.+.+... +...+.+++.++ ++++ T Consensus 232 ~d~~~~~vl~~~Lgg~--------~~e~~gL~ys~~--~~~y~d~Glf~i~~~~~~~~~--~~~~i~~~~~~~---~~~~ 296 (352) T 3cx5_B 232 ASLAQYEVLANYLTSA--------LSELSGLISSAK--LDKFTDGGLFTLFVRDQDSAV--VSSNIKKIVADL---KKGK 296 (352) T ss_dssp TTHHHHHHHHHHHHST--------TSTTGGGCSEEE--EEEETTEEEEEEEEEESCHHH--HHHHHHHHHHHH---HSCE T ss_pred CCHHHHHHHHHHHCCC--------CHHHCCCEECCC--CCCCCCCEEEEEEEECCCHHH--HHHHHHHHHHHC---CCHH T ss_conf 5558999999983352--------143326600256--576457558999983784899--999999999847---7899 Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCC Q ss_conf 99999999999998513898999999999999689847989999988727989999999986277877999816601089 Q gi|254780464|r 330 EIDKECAKIHAKLIKSQERSYLRALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVAKKIFSSTPTLAILGPPMDHVP 409 (424) Q Consensus 330 el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~i~~vt~~di~~~~~~~l~~~~~i~~vgp~~~~~P 409 (424) ||++||+.++.+...+.++... ... +.. ..++.+...+++++.+| +...+| T Consensus 297 el~~a~~~~~~~~~~~~~~~~~-------------~~~-----------~~~----~a~~~~~~~~~s~~~~G-d~~~~p 347 (352) T 3cx5_B 297 DLSPAINYTKLKNAVQNESVSS-------------PIE-----------LNF----DAVKDFKLGKFNYVAVG-DVSNLP 347 (352) T ss_dssp ECGGGHHHHHHHHHHHCCSTTC-------------CCC-----------SCG----GGCCEECCCSCEEEEEE-SGGGSC T ss_pred HHHHHHHHHHHHHHHHHHCCCC-------------HHH-----------HHH----HHHHHHHCCCCEEEEEE-CCCCCC T ss_conf 9999999999999987301153-------------378-----------899----99999854982599980-477788 Q ss_pred CHHHH Q ss_conf 98999 Q gi|254780464|r 410 TTSEL 414 (424) Q Consensus 410 ~~~~l 414 (424) +++|| T Consensus 348 ~~del 352 (352) T 3cx5_B 348 YLDEL 352 (352) T ss_dssp CGGGC T ss_pred CCCCC T ss_conf 70119 No 14 >2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Probab=100.00 E-value=0 Score=364.88 Aligned_cols=393 Identities=14% Similarity=0.133 Sum_probs=297.9 Q ss_pred CCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHH-HHHHHHH-HCCEEEEEECCCEEE Q ss_conf 79871999985899879999998331144888898348999989733568889889-9999997-087679975322379 Q gi|254780464|r 8 TSSGITVITEVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKE-IVEEIEK-VGGDINAYTSLEHTS 85 (424) Q Consensus 8 L~NGl~v~~~~~~~~~~~i~~~~~~Gs~~e~~~~~G~ah~lehl~~~gt~~~~~~~-~~~~l~~-~G~~~na~t~~d~~~ 85 (424) -++|++|++.+++.+--.+++.| +.+|.+..|+||+||||+|+||++||..+ +.+.+.. +|+.+||+|+.|+|+ T Consensus 43 ~~tg~~~~~~~~~d~~~~f~i~f----~T~p~d~~G~aH~lEHm~f~GS~kyp~~~~~~~~~~~~~g~~~NA~T~~d~T~ 118 (995) T 2fge_A 43 KKTGCEVMSVSNEDENKVFGVVF----RTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAFTYPDRTC 118 (995) T ss_dssp TTTCCEEEEEECSCSSEEEEEEE----ECCCSSSSCHHHHHHHHTTSCBTTBCSSCHHHHHHHHCCEEEECCEECSSEEE T ss_pred CCCCCEEEEEECCCCCCEEEEEE----CCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEE T ss_conf 47897899984289777689995----78996898617999986718999989997599999970399823544897578 Q ss_pred EEEECCC-CCCCCCHHHHHHHHHCCCCCC-----------------CHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCC Q ss_conf 9961266-565210012223221035662-----------------0011245567666651133211100000012222 Q gi|254780464|r 86 YHAWVLK-EHVPLALEIIGDMLSNSSFNP-----------------SDIERERNVVLEEIGMSEDDSWDFLDARFSEMVW 147 (424) Q Consensus 86 ~~~~~~~-~~~~~~l~ll~~~~~~p~~~~-----------------~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~f 147 (424) |+++++. +++..+|+++.|.+.+|.+.+ +...+||++|.+|+++..++|.+++++.+.+.+| T Consensus 119 Y~~~~~~~~~~~~~l~v~~d~~~~p~~~~~~~~f~~E~~~~~~~~~~~~~~e~gvV~~E~~~~~~~~~~~~~~~~~~~l~ 198 (995) T 2fge_A 119 YPVASTNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQPDNILGRIAQQALS 198 (995) T ss_dssp EEEEESSHHHHHHHHHHHHHHHHSBGGGTSSHHHHHHTCEEECSCTTSCCEEECHHHHHHHHHTTSHHHHHHHHHHHHHC T ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC T ss_conf 98723898899998999999875866203467898877653036815767766199999986528999999999999847 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCC----CCCCCC Q ss_conf 2222222222103442000166776420112456630000025455122112211012358777788664----223322 Q gi|254780464|r 148 KDQIIGRPILGKPETISSFTPEKIISFVSRNYTADRMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKESM----KPAVYV 223 (424) Q Consensus 148 ~~~~~~~~~~g~~~~i~~lt~~~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~----~p~~~~ 223 (424) ++|||+++++|++++|++++.++|++||++||+|+||+|+|+||+|++++.++|+++|+.|+..+.+... .+.... T Consensus 199 ~~~~y~~~~~G~~~~I~~lt~e~l~~fy~~~Y~P~n~~lvi~Gd~d~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~ 278 (995) T 2fge_A 199 PENTYGVDSGGDPKDIPNLTFEEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVLSEYLDMFEASPSPNSSKIKFQKLFSE 278 (995) T ss_dssp TTSGGGSCTTCCTTTGGGCCHHHHHHHHHHHSSGGGEEEEEEESSCHHHHHHHHHHHHTTCCCCSHHHHSCCCCCCCCSS T ss_pred CCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC T ss_conf 99989889998988871079999999999848825569999869999999999999862477688887666788877778 Q ss_pred CEEEEE-------CCCCCCCEEEECCCCC--CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC Q ss_conf 102330-------3684321023010000--1352113568998777624876532222000268621013332221012 Q gi|254780464|r 224 GGEYIQ-------KRDLAEEHMMLGFNGC--AYQSRDFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHHENFSDN 294 (424) Q Consensus 224 ~~~~~~-------~~~~~~~~i~~~~~~~--~~~~~d~~al~ll~~iLg~g~sSrL~~~lRe~~glaY~v~s~~~~~~~~ 294 (424) ...... .....+..+.++|..+ +.+.++.+++.+++.+|+++.+|+|++.++++...++.+.+++...... T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vl~~lL~~~~~s~l~~~l~~~~~~~~~~~~~~~~~~~~ 358 (995) T 2fge_A 279 PVRLVEKYPAGRDGDLKKKHMLCVNWLLSEKPLDLQTQLALGFLDHLMLGTPASPLRKILLESGLGEALVSSGLSDELLQ 358 (995) T ss_dssp CEEEEEEEECCSSSCGGGCEEEEEEEECCSSCCCHHHHHHHHHHHHHHHSSTTSHHHHHHHHTTSCSEECSCEEECSSSS T ss_pred CEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCC T ss_conf 73689834655545445305899996069887688999999999987247863127999986046723777302333457 Q ss_pred CCEEEEE-ECCCCHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHHCCCCCC Q ss_conf 2013444-2583024777877899998531-48998999999999999998513898----9999999999996898479 Q gi|254780464|r 295 GVLYIAS-ATAKENIMALTSSIVEVVQSLL-ENIEQREIDKECAKIHAKLIKSQERS----YLRALEISKQVMFCGSILC 368 (424) Q Consensus 295 g~~~i~~-~~~~~~~~~~~~~i~~~i~~l~-~~i~~~el~~ak~~~~~~~~~~~~~~----~~~a~~l~~~~~~~~~~~~ 368 (424) +.|.+.. .+.+++..++.+.+.++++++. .|++++++++++++++.++....++. ...+..+...+.+++++.. T Consensus 359 ~~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (995) T 2fge_A 359 PQFGIGLKGVSEENVQKVEELIMDTLKKLAEEGFDNDAVEASMNTIEFSLRENNTGSFPRGLSLMLQSISKWIYDMDPFE 438 (995) T ss_dssp CEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCTTSCHHHHHHHHHHHHHTTTSCSSG T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHH T ss_conf 52799996377212899999999999999965998799999999999999976315654047999999974104699047 Q ss_pred ---HHHHHHHHHC-----CCHHHHHHHHHHHCCCCC-EEEEEECC Q ss_conf ---8999998872-----798999999998627787-79998166 Q gi|254780464|r 369 ---SEKIIDTISA-----ITCEDIVGVAKKIFSSTP-TLAILGPP 404 (424) Q Consensus 369 ---~~~~~~~i~~-----vt~~di~~~~~~~l~~~~-~i~~vgp~ 404 (424) .....+.+.+ +....++..+++|+-.++ .++++..| T Consensus 439 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~p 483 (995) T 2fge_A 439 PLKYTEPLKALKTRIAEEGSKAVFSPLIEKLILNNSHRVTIEMQP 483 (995) T ss_dssp GGCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTTTCCCEEEEEEEE T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC T ss_conf 899899999999999987468889989988512687348998456 No 15 >2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Probab=100.00 E-value=2.8e-39 Score=280.88 Aligned_cols=391 Identities=12% Similarity=0.059 Sum_probs=294.7 Q ss_pred EEEECCCCCEEEEECCCC-CEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCEEEEEECCC Q ss_conf 899879871999985899-8799999983311448888983489999897335688898899999997087679975322 Q gi|254780464|r 4 RISKTSSGITVITEVMPI-DSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEIEKVGGDINAYTSLE 82 (424) Q Consensus 4 ~~~~L~NGl~v~~~~~~~-~~~~i~~~~~~Gs~~e~~~~~G~ah~lehl~~~gt~~~~~~~~~~~l~~~G~~~na~t~~d 82 (424) ...++.||++|+..+.+. ..+.+.+.++.+... .....+++.+...++..||++++..++.+.++..++.++++++.. T Consensus 554 ~~~~~~~g~~v~~~~~~~~~i~~~~~~~~~~~l~-~~~~~~l~l~~~~l~~~Gt~~~s~~el~~~i~~~~~~i~~~~~~~ 632 (995) T 2fge_A 554 TEVGDINGVKVLRHDLFTNDIIYTEVVFDIGSLK-HELLPLVPLFCQSLLEMGTKDLTFVQLNQLIGRKTGGISVYPLTS 632 (995) T ss_dssp CEEEESSSSEEEEEECCCSSEEEEEEEEECTTSC-TTTGGGHHHHHHHHHHSCCSSSCHHHHHHHHHHHSSEEEEEEEEE T ss_pred EEEECCCCCEEEEEECCCCCEEEEEEEECCCCCC-HHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEEECCC T ss_conf 0676069927999845888707999980666678-333110234312100367678899999999998568779984256 Q ss_pred ----------EEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCH-HHHHHHHHHHHHHHC-CCCCCCCCHHHCCCCCCCCC Q ss_conf ----------379996126656521001222322103566200-112455676666511-33211100000012222222 Q gi|254780464|r 83 ----------HTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSD-IERERNVVLEEIGMS-EDDSWDFLDARFSEMVWKDQ 150 (424) Q Consensus 83 ----------~~~~~~~~~~~~~~~~l~ll~~~~~~p~~~~~~-~~~ek~~v~~e~~~~-~~~p~~~~~~~~~~~~f~~~ 150 (424) .+.+++++++++++.+++++.+++.+|.|++.+ ++..++...+.+... .+++...+...+....++.+ T Consensus 633 ~~~~~~~~~~~~~is~~~l~~~~~~~l~ll~e~l~~~~f~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 712 (995) T 2fge_A 633 SVRGKDEPCSKIIVRGKSMAGRADDLFNLMNCLLQEVQFTDQQRFKQFVSQSRARMENRLRGSGHGIAAARMDAMLNIAG 712 (995) T ss_dssp EETTEEEEEEEEEEEEEEEGGGHHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCHHH T ss_pred CCCCCCCCHHHHEEEEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 66776541013202442136419999999999971799776899999999999999887640246899999998508432 Q ss_pred CCCCCCCCH-----HHHHHHH-------HHHHHHHHHCCCCCCCCCHHHHCCCCCH-HHHHHHHHHCCCCCCCCCCCCCC Q ss_conf 222222210-----3442000-------1667764201124566300000254551-22112211012358777788664 Q gi|254780464|r 151 IIGRPILGK-----PETISSF-------TPEKIISFVSRNYTADRMYVVCVGAVDH-EFCVSQVESYFNVCSVAKIKESM 217 (424) Q Consensus 151 ~~~~~~~g~-----~~~i~~l-------t~~~l~~f~~~~y~p~n~~l~i~Gd~~~-~~~~~~i~~~f~~~~~~~~~~~~ 217 (424) ++.....|. .+.+... ..++++.+|+++|.++|++++|+||++. +.+.+.++++++.||..+..... T Consensus 713 ~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~gd~~~~~~~~~~~~~~~~~lp~~~~~~~~ 792 (995) T 2fge_A 713 WMSEQMGGLSYLEFLHTLEKKVDEDWEGISSSLEEIRRSLLARNGCIVNMTADGKSLTNVEKSVAKFLDLLPENPSGGLV 792 (995) T ss_dssp HHHHHHHSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCSTTCEEEEEECHHHHHHHHHHHHHHHHTSCSSCSSCSC T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 23444467523444888988766549999999999999985325759999837877999999999998537778877766 Q ss_pred CCCCC--CCEEEEECCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 22332--2102330368432102301000013521135689987776248765322220002686210133322210122 Q gi|254780464|r 218 KPAVY--VGGEYIQKRDLAEEHMMLGFNGCAYQSRDFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHHENFSDNG 295 (424) Q Consensus 218 ~p~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~al~ll~~iLg~g~sSrL~~~lRe~~glaY~v~s~~~~~~~~g 295 (424) .+... ...+.+ ..+.++.++.++++++++.++|..++.|++.+|+++ +|+++|||+ |+||++++.+.... | T Consensus 793 ~~~~~~~~~~e~~-~~~~~v~yv~~~~~~~~~~~~d~~~l~vl~~iL~~~---~L~~~IRek-ggAYg~~~~~~~~~--g 865 (995) T 2fge_A 793 TWDGRLPLRNEAI-VIPTQVNYVGKAGNIYSTGYELDGSAYVISKHISNT---WLWDRVRVS-GGAYGGFCDFDSHS--G 865 (995) T ss_dssp CCCCCCCCCCEEE-ECSCSSBEEEEEEEGGGGTCCCCTHHHHHHHHHHHT---HHHHHTTTT-TCCSEEEEEEETTT--T T ss_pred CCCCCCCCCCEEE-ECCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCC---CCHHHHCCC-CCCEEEEEEEECCC--C T ss_conf 6666577775699-847860556877446899996489999999997778---348997216-88769768976799--8 Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHH Q ss_conf 01344425830247778778999985314-89989999999999999985138989999999999996898479899999 Q gi|254780464|r 296 VLYIASATAKENIMALTSSIVEVVQSLLE-NIEQREIDKECAKIHAKLIKSQERSYLRALEISKQVMFCGSILCSEKIID 374 (424) Q Consensus 296 ~~~i~~~~~~~~~~~~~~~i~~~i~~l~~-~i~~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ 374 (424) .+.++..++| +..++++++.+.++.+++ +++++||+++|..+.+.+ ....++...+.......+.|.+.+..+++.+ T Consensus 866 ~~~f~sy~dp-~~~~t~~~~~~~~~~l~~~~~t~eel~~ak~~~~~~~-~~~~s~~~~~~~~~~~~~~g~~~~~~~~~~~ 943 (995) T 2fge_A 866 VFSYLSYRDP-NLLKTLDIYDGTGDFLRGLDVDQETLTKAIIGTIGDV-DSYQLPDAKGYSSLLRHLLGVTDEERQRKRE 943 (995) T ss_dssp EEEEEEESBS-CSHHHHHHHHTHHHHHHTCCCCHHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHHHTTCCHHHHHHHHH T ss_pred EEEEEEECCC-CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 8999997289-7999999999999999749999999999999999851-5688989999999999982979999999999 Q ss_pred HHHCCCHHHHHHHHHHHCC--CCCEEEEEECC Q ss_conf 8872798999999998627--78779998166 Q gi|254780464|r 375 TISAITCEDIVGVAKKIFS--STPTLAILGPP 404 (424) Q Consensus 375 ~i~~vt~~di~~~~~~~l~--~~~~i~~vgp~ 404 (424) .|.+||++||+++|++|+. .+..++++|++ T Consensus 944 ~i~~vT~~di~~~a~~~~~~~~~~~~~vvg~~ 975 (995) T 2fge_A 944 EILTTSLKDFKDFAQAIDVVRDKGVAVAVASA 975 (995) T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHCEEEEEECH T ss_pred HHHCCCHHHHHHHHHHHHCCCCCCEEEEEECH T ss_conf 99749999999999997221358879999289 No 16 >3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 2wby_A 2wc0_A 3h44_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A Probab=100.00 E-value=2.4e-34 Score=247.84 Aligned_cols=390 Identities=10% Similarity=0.111 Sum_probs=290.1 Q ss_pred EEECCCCCEEEEECCC---CCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCEEEEEECC Q ss_conf 9987987199998589---9879999998331144888898348999989733568889889999999708767997532 Q gi|254780464|r 5 ISKTSSGITVITEVMP---IDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEIEKVGGDINAYTSL 81 (424) Q Consensus 5 ~~~L~NGl~v~~~~~~---~~~~~i~~~~~~Gs~~e~~~~~G~ah~lehl~~~gt~~~~~~~~~~~l~~~G~~~na~t~~ 81 (424) .....+|.++...+.. .|.+.+.+.+..+.....+...+++.++..++ +.+..++.......|..++.+.+. T Consensus 521 ~i~~~~~~~~~~~~d~~f~~pk~~~~~~~~s~~~~~~~~~~~l~~l~~~l~-----~~~l~e~~~~~~~agl~~~i~~~~ 595 (990) T 3cww_A 521 LIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELL-----KDSLNEYAYAAELAGLSYDLQNTI 595 (990) T ss_dssp EEEECSSEEEEEEECSSCCCSEEEEEEEEECGGGTSSHHHHHHHHHHHHHH-----HHHHHHHHHHHHHTTEEEEEEEET T ss_pred EEEECCCEEEEECCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHCCCEEEEEECC T ss_conf 997068546886578765674046888733840003878889999998777-----888899999987357546776326 Q ss_pred CEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC-CCCCCCCHHHCCCCCCCCCCCCCCCCCHH Q ss_conf 23799961266565210012223221035662001124556766665113-32111000000122222222222222103 Q gi|254780464|r 82 EHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEEIGMSE-DDSWDFLDARFSEMVWKDQIIGRPILGKP 160 (424) Q Consensus 82 d~~~~~~~~~~~~~~~~l~ll~~~~~~p~~~~~~~~~ek~~v~~e~~~~~-~~p~~~~~~~~~~~~f~~~~~~~~~~g~~ 160 (424) +...+.+.+.+++++.+++++.+.+.+|.+++++|+..+..+..++.... +.|...+...+...+++ +++. ..... T Consensus 596 ~g~~~~~~g~~~~l~~~l~~i~~~l~~~~~~~~~f~~~k~~~~~~~~n~~~~~p~~~~~~~~~~l~~~-~~~~--~~~~~ 672 (990) T 3cww_A 596 YGMYLSVKGYNDKQPILLKKIIEKMATFEIDEARFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTE-VAWT--KDELK 672 (990) T ss_dssp TEEEEEEEEESTTHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHBS-SCCC--HHHHH T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CCCC--HHHHH T ss_conf 77643103421027999999999853977678899999999999987533278999999999998568-8886--68889 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC---------CCCCCEEE-EE- Q ss_conf 44200016677642011245663000002545512211221101235877778866422---------33221023-30- Q gi|254780464|r 161 ETISSFTPEKIISFVSRNYTADRMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKESMKP---------AVYVGGEY-IQ- 229 (424) Q Consensus 161 ~~i~~lt~~~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~p---------~~~~~~~~-~~- 229 (424) +.++.++.+++++|++++|.+.++.++|+||++++++.++++++++.++......+..+ ....+... .. T Consensus 673 ~~l~~it~~dl~~f~~~~~~~~~~~~~i~Gni~~~~a~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 752 (990) T 3cww_A 673 EALADVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTLIEHAHTKPLLPSQLAAYREVQLPDRGWFVYQQ 752 (990) T ss_dssp HHHTTCCHHHHHHHHHHHHHEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHCCEECCGGGCCCCCBBCCCTTEEEEEEE T ss_pred HHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCEEEEEE T ss_conf 98876548899999999851033478870686999999999999976411566788882001333305648986289982 Q ss_pred -CCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCE--EEEEECCCC Q ss_conf -36843210230100001352113568998777624876532222000268621013332221012201--344425830 Q gi|254780464|r 230 -KRDLAEEHMMLGFNGCAYQSRDFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHHENFSDNGVL--YIASATAKE 306 (424) Q Consensus 230 -~~~~~~~~i~~~~~~~~~~~~d~~al~ll~~iLg~g~sSrL~~~lRe~~glaY~v~s~~~~~~~~g~~--~i~~~~~~~ 306 (424) ..+...+.+.+.++++..+.++..++.+++.+| +++||++||++.||+|+|+++.....+...+ .+....+|+ T Consensus 753 ~~~~~~~s~v~~~~~~~~~~~~~~~~~~ll~~il----~~~lf~~LRt~~qLgY~v~s~~~~~~~~~g~~~~vqS~~~p~ 828 (990) T 3cww_A 753 RNEVHNNSGIEIYYQTDMQSTSENMFLELFAQII----SEPAFNTLRTKEQLGYIVFSGPRRANGIQGLRFIIQSEKPPH 828 (990) T ss_dssp ECSSCSSEEEEEEEEEEECCHHHHHHHHHHHHHH----HHHHHHHHTTTTCCCSEEEEEEEEETTEEEEEEEEEESSCHH T ss_pred CCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH----HHHHHHHHHHCCCCCEEEEEEEEECCCEEEEEEEEECCCCHH T ss_conf 6987753289999558999999999999999998----799999998703763499789875388015999997899999 Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHCCCHHHHH Q ss_conf 2477787789999853148998999999999999998513898999999999999689-847989999988727989999 Q gi|254780464|r 307 NIMALTSSIVEVVQSLLENIEQREIDKECAKIHAKLIKSQERSYLRALEISKQVMFCG-SILCSEKIIDTISAITCEDIV 385 (424) Q Consensus 307 ~~~~~~~~i~~~i~~l~~~i~~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~~~-~~~~~~~~~~~i~~vt~~di~ 385 (424) .+.+.++.+.+.+....++++++||+++|+.+..++.....+....+..++.....++ ..+..+++.+.|++||.+||+ T Consensus 829 ~l~~~i~~fl~~~~~~l~~~s~eef~~~k~~li~~~~~~~~~l~~~~~~~w~~i~~~~~~fd~~~~~~~~l~~lT~~d~~ 908 (990) T 3cww_A 829 YLESRVEAFLITMEKSIEDMTEEAFQKHIQALAIRRLDKPKKLSAESAKYWGEIISQQYNFDRDNTEVAYLKTLTKADII 908 (990) T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHTTCCCTTHHHHHHHHHTTCCHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHH T ss_conf 99999999999999988349999999999999998754789999999999999982899987679999999768999999 Q ss_pred HHHHHHCCCC------CEEEEEECCCC Q ss_conf 9999862778------77999816601 Q gi|254780464|r 386 GVAKKIFSST------PTLAILGPPMD 406 (424) Q Consensus 386 ~~~~~~l~~~------~~i~~vgp~~~ 406 (424) +++++||.++ .+|.++|+..+ T Consensus 909 ~~~~~~l~~~~~~r~kl~i~v~g~~~~ 935 (990) T 3cww_A 909 KFYKEMLAVDAPRRHKVSVHVLAREMD 935 (990) T ss_dssp HHHHHHTSTTCTTCEEEEEEEECTTC- T ss_pred HHHHHHCCCCCCCCEEEEEEEEECCCC T ss_conf 999996487888730699999945876 No 17 >1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Probab=100.00 E-value=8.1e-32 Score=230.88 Aligned_cols=382 Identities=9% Similarity=0.055 Sum_probs=266.8 Q ss_pred EEEEECCCCCEEEEECCC----CCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCEEEEE Q ss_conf 189987987199998589----9879999998331144888898348999989733568889889999999708767997 Q gi|254780464|r 3 LRISKTSSGITVITEVMP----IDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEIEKVGGDINAY 78 (424) Q Consensus 3 ~~~~~L~NGl~v~~~~~~----~~~~~i~~~~~~Gs~~e~~~~~G~ah~lehl~~~gt~~~~~~~~~~~l~~~G~~~na~ 78 (424) ++...++||++++..+.. .+.+.+.+.+..+....++....++.++..++.. ...++....+..+...+.. T Consensus 500 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~~~~~ 574 (939) T 1q2l_A 500 PELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDYLAGL-----ALDQLSNQASVGGISFSTN 574 (939) T ss_dssp CEEEEEETTEEEEEECCSSCTTSSEEEEEEEEECGGGGSSHHHHHHHHHHHHHHHH-----HHHHHHHHHHHTTEEEEEE T ss_pred CEEEECCCCCEEEECCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHCCCCCC T ss_conf 64886168824641266311565526899722684112476778999999999875-----4578999999741255103 Q ss_pred ECCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCC Q ss_conf 53223799961266565210012223221035662001124556766665113321110000001222222222222221 Q gi|254780464|r 79 TSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILG 158 (424) Q Consensus 79 t~~d~~~~~~~~~~~~~~~~l~ll~~~~~~p~~~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~f~~~~~~~~~~g 158 (424) +.+.+.+++++.+++++.++.++.+.+.+|.++++.++..++.++++++....++...........++.+.++. ..+ T Consensus 575 -~~~~i~l~~~g~~~~~~~~l~~l~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~ 651 (939) T 1q2l_A 575 -ANNGLMVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVPYFS--RDE 651 (939) T ss_dssp -ESSEEEEEEEEESSSHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHTTSSSCCC--HHH T ss_pred -CCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC--HHH T ss_conf -55448999984155568999999999747320089999999999999999884868999999999862799998--488 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC--CCCCCEEEE--ECCCCC Q ss_conf 0344200016677642011245663000002545512211221101235877778866422--332210233--036843 Q gi|254780464|r 159 KPETISSFTPEKIISFVSRNYTADRMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKESMKP--AVYVGGEYI--QKRDLA 234 (424) Q Consensus 159 ~~~~i~~lt~~~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~p--~~~~~~~~~--~~~~~~ 234 (424) ..+.+.+++.+++++|+++++.+.++.++|+||++.+++.++++++++.++.......... ....+...+ ...+.. T Consensus 652 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~i~Gn~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (939) T 1q2l_A 652 RRKILPSITLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADGSEWCRNKDVVVDKKQSVIFEKAGNST 731 (939) T ss_dssp HHHHGGGCCHHHHHHHHHHHHTTCEEEEEEEESCCHHHHHHHHHHHHHHHTCCCSCCCCCEEECCCSCEEEEEEECCSSS T ss_pred HHHHHHHCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC T ss_conf 89999852199999999864323320132017878999999999998755887754444544446888634898568887 Q ss_pred CCEEEECC-CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH Q ss_conf 21023010-00013521135689987776248765322220002686210133322210122013444258302477787 Q gi|254780464|r 235 EEHMMLGF-NGCAYQSRDFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHHENFSDNGVLYIASATAKENIMALTS 313 (424) Q Consensus 235 ~~~i~~~~-~~~~~~~~d~~al~ll~~iLg~g~sSrL~~~lRe~~glaY~v~s~~~~~~~~g~~~i~~~~~~~~~~~~~~ 313 (424) +..+++.+ ..+..+.++..++.|++.+| +++||++||+++||+|+++++.....+.+.+.++..+...+...+.. T Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~l----~~~l~~~LR~k~~l~Y~v~~~~~~~~~~~~~~~~v~s~~~~~~~l~~ 807 (939) T 1q2l_A 732 DSALAAVFVPTGYDEYTSSAYSSLLGQIV----QPWFYNQLRTEEQLGYAVFAFPMSVGRQWGMGFLLQSNDKQPSFLWE 807 (939) T ss_dssp CEEEEEEEECSSCCHHHHHHHHHHHHHHH----HHHHTHHHHTSCCSSSCEEEEEEEETTEEEEEEEEEESSSCHHHHHH T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH----HHHHHHHHHHCCCCEEEEEEEEEECCCCEEEEEEEEECCCCHHHHHH T ss_conf 63689998368999999999999999998----89999999864475069868986338821699999808999899999 Q ss_pred HHHHHH---HHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHCCCHHHHHHHHH Q ss_conf 789999---853148998999999999999998513898999999999999689-8479899999887279899999999 Q gi|254780464|r 314 SIVEVV---QSLLENIEQREIDKECAKIHAKLIKSQERSYLRALEISKQVMFCG-SILCSEKIIDTISAITCEDIVGVAK 389 (424) Q Consensus 314 ~i~~~i---~~l~~~i~~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~~~-~~~~~~~~~~~i~~vt~~di~~~~~ 389 (424) .+.+.+ ....++++++||+++|..+..++.....+....+..++.....++ +.+..+++.+.|++||.+||+++++ T Consensus 808 ~i~~~l~~~~~~l~~lt~~el~~~K~~li~~~~~~~~~l~~~~~~~~~~i~~~~~~f~~~~~~~~~l~~iT~edv~~~~~ 887 (939) T 1q2l_A 808 RYKAFFPTAEAKLRAMKPDEFAQIQQAVITQMLQAPQTLGEEASKLSKDFDRGNMRFDSRDKIVAQIKLLTPQKLADFFH 887 (939) T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHH T ss_conf 99999999999873599999999999999987447899999999999999838999877999999997689999999999 Q ss_pred HHCCCCC Q ss_conf 8627787 Q gi|254780464|r 390 KIFSSTP 396 (424) Q Consensus 390 ~~l~~~~ 396 (424) +||.++. T Consensus 888 ~~~~~~~ 894 (939) T 1q2l_A 888 QAVVEPQ 894 (939) T ss_dssp HHTTSCS T ss_pred HHHCCCC T ss_conf 9835998 No 18 >3ih6_A Putative zinc protease; bordetella pertussis tohama I, structural genomics, PSI-2, protein structure initiative; 2.15A {Bordetella pertussis} PDB: 3ivl_A Probab=99.95 E-value=1.7e-27 Score=201.99 Aligned_cols=185 Identities=16% Similarity=0.126 Sum_probs=160.4 Q ss_pred CCCCCCCEEEEECCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCE Q ss_conf 22332210233036843210230100001352113568998777624876532222000268621013332221012201 Q gi|254780464|r 218 KPAVYVGGEYIQKRDLAEEHMMLGFNGCAYQSRDFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHHENFSDNGVL 297 (424) Q Consensus 218 ~p~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~al~ll~~iLg~g~sSrL~~~lRe~~glaY~v~s~~~~~~~~g~~ 297 (424) +|.......++..++.++.++.++|++|+..++|++++.|++.+||+|++|||+++|||+ |++|+++++...+.+.|+| T Consensus 7 EP~q~~~r~~~v~~~~~~~~v~~~~~~p~~~~~d~~al~vl~~iLg~g~sSrL~~~L~e~-~l~~~~~a~~~~~~~~g~f 85 (197) T 3ih6_A 7 EPVQDGERSVTLRRAGGTPLVAAMYHLPAAGSPDFVGLDLAATILADTPSSRLYHALVPT-KLASGVFGFTMDQLDPGLA 85 (197) T ss_dssp CC-------------CCSCEEEEEEECCCTTSTTHHHHHHHHHHHHSSTTSHHHHHHTTT-TSCSEEEEEEETTSSSCEE T ss_pred CCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHCCC-CCEEEEEECCCCCCCCCEE T ss_conf 989988679998278760024778627999992099999999997799846899982646-6436887415655678338 Q ss_pred EEEEECCCC-HHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH Q ss_conf 344425830-247778778999985314-899899999999999999851389899999999999968984798999998 Q gi|254780464|r 298 YIASATAKE-NIMALTSSIVEVVQSLLE-NIEQREIDKECAKIHAKLIKSQERSYLRALEISKQVMFCGSILCSEKIIDT 375 (424) Q Consensus 298 ~i~~~~~~~-~~~~~~~~i~~~i~~l~~-~i~~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~ 375 (424) .+++.+.++ +.+++.+.+.+++.++++ +++++||+++|+.++.++....+++..++..++.... .|++....++.+. T Consensus 86 ~i~~~~~~~~~~~~~~~~i~~~l~~l~~~~it~eeL~~aK~~~~~~~~~~~~s~~~~a~~l~~~~~-~g~~~~~~~~~~~ 164 (197) T 3ih6_A 86 MFGAQLQPGMDQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADPEKVGVALSEAIA-SGDWRLFFLQRDR 164 (197) T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHH-TTCTTHHHHHHHH T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-CCCHHHHHHHHHH T ss_conf 999970655469999999999999876424529999999999999898863799999999999997-5996569999999 Q ss_pred HHCCCHHHHHHHHHHHCCCCC-EEEEEECC Q ss_conf 872798999999998627787-79998166 Q gi|254780464|r 376 ISAITCEDIVGVAKKIFSSTP-TLAILGPP 404 (424) Q Consensus 376 i~~vt~~di~~~~~~~l~~~~-~i~~vgp~ 404 (424) |++||++||++++++||.++. ++.++.|. T Consensus 165 i~~vT~~dv~~~a~~yl~~~~~~v~~~~P~ 194 (197) T 3ih6_A 165 VREAKLDDVQRAAVAYLVRSNRTEGRYIPT 194 (197) T ss_dssp HHTCCHHHHHHHHHHHSSGGGCEEEEECC- T ss_pred HHCCCHHHHHHHHHHHCCCCCCEEEEEECC T ss_conf 987899999999999678017289999328 No 19 >1pp9_A Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein, cytochrome B; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* 3bcc_A* ... Probab=98.50 E-value=4.3e-06 Score=58.41 Aligned_cols=165 Identities=12% Similarity=0.128 Sum_probs=106.2 Q ss_pred ECCCCCCCEEEECCCCCCCCCCH-HH-HHHHHHHHHHCCCCCC----CCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEE Q ss_conf 03684321023010000135211-35-6899877762487653----222200026862101333222101220134442 Q gi|254780464|r 229 QKRDLAEEHMMLGFNGCAYQSRD-FY-LTNILASILGDGMSSR----LFQEVREKRGLCYSISAHHENFSDNGVLYIASA 302 (424) Q Consensus 229 ~~~~~~~~~i~~~~~~~~~~~~d-~~-al~ll~~iLg~g~sSr----L~~~lRe~~glaY~v~s~~~~~~~~g~~~i~~~ 302 (424) ...+.+...+.+.+++.+..++. .. ...++.+++..|...+ +.+ ..+..|..+++++ ..-...++.. T Consensus 28 ~~~~~~~v~i~~~~~~Gs~~E~~~~~Glahllehm~f~Gt~~~~~~~~~~-~l~~~G~~~na~t------~~d~t~~~~~ 100 (446) T 1pp9_A 28 EQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEK-EVESMGAHLNAYS------TREHTAYYIK 100 (446) T ss_dssp EECSCSEEEEEEEESCSGGGCCTTTTTHHHHHHHHTTSCBSSSTTTHHHH-HHHHTTCEEEEEE------CSSCEEEEEE T ss_pred ECCCCCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHH-HHHHCCCEEEEEE------CCCCEEEEEE T ss_conf 76999979999998004556699974399999999728989999899999-9997199799998------6260899999 Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHH--HHHHHHHCCC Q ss_conf 58302477787789999853148998999999999999998513898999999999999689847989--9999887279 Q gi|254780464|r 303 TAKENIMALTSSIVEVVQSLLENIEQREIDKECAKIHAKLIKSQERSYLRALEISKQVMFCGSILCSE--KIIDTISAIT 380 (424) Q Consensus 303 ~~~~~~~~~~~~i~~~i~~l~~~i~~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~--~~~~~i~~vt 380 (424) +.+++.+.+++.+.+.+..- .++++++++.|..++..+....+++...+.......++++.+.... -..+.|+++| T Consensus 101 ~~~~~~~~~l~ll~~~~~~p--~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~i~~~t 178 (446) T 1pp9_A 101 ALSKDLPKAVELLADIVQNC--SLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLS 178 (446) T ss_dssp EEGGGHHHHHHHHHHHHHHB--CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCHHHHHHCC T ss_pred ECHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCC T ss_conf 77577777689999997667--8897998889999887652023581889999999986378974566867999997489 Q ss_pred HHHHHHHHHHHCCCCC-EEEEEE Q ss_conf 8999999998627787-799981 Q gi|254780464|r 381 CEDIVGVAKKIFSSTP-TLAILG 402 (424) Q Consensus 381 ~~di~~~~~~~l~~~~-~i~~vg 402 (424) .++++++.++++.++. .++++| T Consensus 179 ~~~l~~f~~~~y~p~n~~i~i~G 201 (446) T 1pp9_A 179 RADLTEYLSRHYKAPRMVLAAAG 201 (446) T ss_dssp HHHHHHHHHHHCCGGGEEEEEEE T ss_pred HHHHHHHHHHHCCCCCEEEEEEC T ss_conf 99999999871698735999736 No 20 >1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Probab=98.43 E-value=6.3e-06 Score=57.26 Aligned_cols=173 Identities=12% Similarity=0.086 Sum_probs=102.9 Q ss_pred CCCEEEEEC--CCCCCCEEEECCCCCCCCCC-HHH-HHHHHHHHHHCCCCCC----CCCCCCCCCCCCCHHHHHHHHHHC Q ss_conf 221023303--68432102301000013521-135-6899877762487653----222200026862101333222101 Q gi|254780464|r 222 YVGGEYIQK--RDLAEEHMMLGFNGCAYQSR-DFY-LTNILASILGDGMSSR----LFQEVREKRGLCYSISAHHENFSD 293 (424) Q Consensus 222 ~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~-d~~-al~ll~~iLg~g~sSr----L~~~lRe~~glaY~v~s~~~~~~~ 293 (424) ..|-+++.. +..+...+.+.+.+.+..++ +.. ...++.+++..|...+ +.+ ..+..|..+++++ . T Consensus 13 ~NGl~v~~~~~~~~~~v~i~~~~~~Gs~~e~~~~~G~ahlleh~~~~Gt~~~~~~~~~~-~~~~~g~~~na~t------~ 85 (443) T 1hr6_B 13 PNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQQGIEL-EIENIGSHLNAYT------S 85 (443) T ss_dssp TTSCEEEEEECSSCSEEEEEEEEECSGGGCCTTTTTHHHHHHHHTTSBBSSCBHHHHHH-HHHHTTCEEEEEE------C T ss_pred CCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHH-HHHHHCCEEEEEE------C T ss_conf 99988999998999879999997704677798986099999999818898999999999-9997098689998------5 Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHH--H Q ss_conf 22013444258302477787789999853148998999999999999998513898999999999999689847989--9 Q gi|254780464|r 294 NGVLYIASATAKENIMALTSSIVEVVQSLLENIEQREIDKECAKIHAKLIKSQERSYLRALEISKQVMFCGSILCSE--K 371 (424) Q Consensus 294 ~g~~~i~~~~~~~~~~~~~~~i~~~i~~l~~~i~~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~--~ 371 (424) .-...++..+.+++.+.+++.+.+.+..- .++++++++.|..+...+....+++...+........+.+.+.... - T Consensus 86 ~~~t~~~~~~~~~~l~~~l~ll~~~~~~p--~~~~~~~~~~k~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G 163 (443) T 1hr6_B 86 RENTVYYAKSLQEDIPKAVDILSDILTKS--VLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILG 163 (443) T ss_dssp SSEEEEEEEEEGGGHHHHHHHHHHHHHSB--CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSC T ss_pred CCEEEEEEECCHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 67089999615888999999999985366--7898997788888887777653036678999999983699988888847 Q ss_pred HHHHHHCCCHHHHHHHHHHHCCCCC-EEEEEEC Q ss_conf 9998872798999999998627787-7999816 Q gi|254780464|r 372 IIDTISAITCEDIVGVAKKIFSSTP-TLAILGP 403 (424) Q Consensus 372 ~~~~i~~vt~~di~~~~~~~l~~~~-~i~~vgp 403 (424) -.+.|+++|.++++++.++++.++. +++++|. T Consensus 164 ~~~~i~~~~~~~l~~f~~~~y~p~n~~l~i~G~ 196 (443) T 1hr6_B 164 PIKNIKSITRTDLKDYITKNYKGDRMVLAGAGA 196 (443) T ss_dssp CHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEES T ss_pred CHHHHCCCCHHHHHHHHHHHCCCCCEEEECCCC T ss_conf 978854078999999999827923079862688 No 21 >1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Probab=98.38 E-value=7.4e-06 Score=56.82 Aligned_cols=128 Identities=15% Similarity=0.171 Sum_probs=58.7 Q ss_pred HHHHHHHHCCEEEEEECC----C--EEEEEEECCCCCCCCCHHHHHHHHHCC------CCCCCHHHHHHHHHHHHHHHCC Q ss_conf 999999708767997532----2--379996126656521001222322103------5662001124556766665113 Q gi|254780464|r 64 IVEEIEKVGGDINAYTSL----E--HTSYHAWVLKEHVPLALEIIGDMLSNS------SFNPSDIERERNVVLEEIGMSE 131 (424) Q Consensus 64 ~~~~l~~~G~~~na~t~~----d--~~~~~~~~~~~~~~~~l~ll~~~~~~p------~~~~~~~~~ek~~v~~e~~~~~ 131 (424) +.+..+..|...++++.. + .+.+++.+.+++.+.+++.+.+.+.+- .++++++++.|..++.++.... T Consensus 290 ~~~lre~~gl~ys~~s~~~~~~~~g~f~i~~~~~~~~~~~~v~~i~~el~~~~~~~~~~it~~eL~raK~~l~~~~~~~~ 369 (475) T 1hr6_A 290 YTHVLNQYYFVENCVAFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNL 369 (475) T ss_dssp HHHTTTTCSSEEEEEEEEEECSSCEEEEEEEEECGGGHHHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC T ss_conf 99766514741257763034467763465676567758999999999999999847789989999999999999999865 Q ss_pred CCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC---------CCHHHHCCCCC Q ss_conf 321110000001222222222222221034420001667764201124566---------30000025455 Q gi|254780464|r 132 DDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTAD---------RMYVVCVGAVD 193 (424) Q Consensus 132 ~~p~~~~~~~~~~~~f~~~~~~~~~~g~~~~i~~lt~~~l~~f~~~~y~p~---------n~~l~i~Gd~~ 193 (424) +++...+.+.....++.+.+ .++.-..+.|+++|.+||++..++++..+ ..+++++|+.. T Consensus 370 e~~~~~~~~i~~~~l~~~~~--~~~~~~~~~i~~VT~~dv~~~a~~~~~~~~~~~~~g~~~~t~~~~g~~~ 438 (475) T 1hr6_A 370 ESKLVELEDMGRQVLMHGRK--IPVNEMISKIEDLKPDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDRG 438 (475) T ss_dssp TSHHHHHHHHHHHHHHHSCC--CCHHHHHHHHHTCCHHHHHHHHHHHHTTCCCCTTCCCCCCEEEEESCGG T ss_pred CCHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECCCCCEEEEECCCC T ss_conf 89999999999999967998--9999999999787999999999997278973888438874399955512 No 22 >3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Probab=98.31 E-value=9.9e-05 Score=49.27 Aligned_cols=163 Identities=7% Similarity=0.080 Sum_probs=92.6 Q ss_pred CCCCCEEEECCCCCCCCCC-HHH-HHHHHHHHHHCCCCCCCCCC---CCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 8432102301000013521-135-68998777624876532222---000268621013332221012201344425830 Q gi|254780464|r 232 DLAEEHMMLGFNGCAYQSR-DFY-LTNILASILGDGMSSRLFQE---VREKRGLCYSISAHHENFSDNGVLYIASATAKE 306 (424) Q Consensus 232 ~~~~~~i~~~~~~~~~~~~-d~~-al~ll~~iLg~g~sSrL~~~---lRe~~glaY~v~s~~~~~~~~g~~~i~~~~~~~ 306 (424) +.+...+.+.+.+.+..++ +.. ...++.+++..|...+=..+ ..+..|..+++... ...+.++..+.++ T Consensus 20 ~~~~v~i~~~~~~Gs~~e~~~~~G~ahllehl~~~gt~~~~~~~l~~~l~~~G~~~~~~t~------~~~~~~~~~~~~~ 93 (421) T 3hdi_A 20 TVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIAEFFDSIGGQVNAFTS------KEYTCYYAKVLDD 93 (421) T ss_dssp TCSEEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSBBSSSBHHHHHHHHHTTTSCEEEEEC------SSCEEEEEEEEGG T ss_pred CCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEEC------CCEEEEEEECCHH T ss_conf 9988999999751477779997349999999970899999989999999972998999986------8848999961366 Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHCCCHHHH Q ss_conf 2477787789999853148998999999999999998513898999999999999689847--98999998872798999 Q gi|254780464|r 307 NIMALTSSIVEVVQSLLENIEQREIDKECAKIHAKLIKSQERSYLRALEISKQVMFCGSIL--CSEKIIDTISAITCEDI 384 (424) Q Consensus 307 ~~~~~~~~i~~~i~~l~~~i~~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~--~~~~~~~~i~~vt~~di 384 (424) +.+.+++.+.+.+... .++++++++.|..+...+....+++..++.......++++.+. ...--.+.++++|.+++ T Consensus 94 ~l~~~l~ll~~~~~~p--~~~~~~~~~ek~~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l 171 (421) T 3hdi_A 94 HAGQAIDTLSDMFFHS--TFQKEELEKERKVVFEEIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGTVETLNSFNEGML 171 (421) T ss_dssp GHHHHHHHHHHHHHSB--CCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTSGGGSCTTCCHHHHHHCCHHHH T ss_pred HHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH T ss_conf 7887899999865376--53355679999999999998866878899999987337999998887787310141334568 Q ss_pred HHHHHHHCCCCCEE-EEEE Q ss_conf 99999862778779-9981 Q gi|254780464|r 385 VGVAKKIFSSTPTL-AILG 402 (424) Q Consensus 385 ~~~~~~~l~~~~~i-~~vg 402 (424) +++.++++.++..+ +++| T Consensus 172 ~~f~~~~y~~~~~~l~i~G 190 (421) T 3hdi_A 172 RHYMDRFYTGDYVVISVAG 190 (421) T ss_dssp HHHHHHHSSTTTEEEEEEE T ss_pred HHHHHHHCCCCCCEEEECC T ss_conf 9999984484312156617 No 23 >3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2; 1.90A {Pseudomonas fluorescens pf-5} Probab=98.27 E-value=2.4e-05 Score=53.34 Aligned_cols=173 Identities=16% Similarity=0.164 Sum_probs=109.3 Q ss_pred CCEEEEE--CCCCCCCEEEECCCCCCCCCCHHH-HHHHHHHHHHCCCCCC----CCCCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 2102330--368432102301000013521135-6899877762487653----22220002686210133322210122 Q gi|254780464|r 223 VGGEYIQ--KRDLAEEHMMLGFNGCAYQSRDFY-LTNILASILGDGMSSR----LFQEVREKRGLCYSISAHHENFSDNG 295 (424) Q Consensus 223 ~~~~~~~--~~~~~~~~i~~~~~~~~~~~~d~~-al~ll~~iLg~g~sSr----L~~~lRe~~glaY~v~s~~~~~~~~g 295 (424) .|-+++. .+..+...+.+.+.+.+..+++.. ...++.++|..|.... |.+ ..+..|...+++ ...+.. T Consensus 21 NG~~v~~~~~~~~p~v~~~l~~~~Gs~~e~~~~G~a~lle~ll~~gt~~~~~~~l~~-~l~~~g~~~~~~----t~~d~~ 95 (434) T 3gwb_A 21 EGAKVLFVEARELPMFDLRLIFAAGSSQDGNAPGVALLTNAMLNEGVAGKDVGAIAQ-GFEGLGADFGNG----AYKDMA 95 (434) T ss_dssp TCCEEEEEECCSSSEEEEEEEESCSGGGCTTSTTHHHHHHHHGGGEETTEEHHHHHH-HHHTTTCEEEEE----ECSSCE T ss_pred CCCEEEEEECCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHH-HHHHCCCEEEEE----ECCCEE T ss_conf 999899999799988999999801367689716399999999817989999999999-999809977768----624557 Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC--CHHHHH Q ss_conf 013444258302477787789999853148998999999999999998513898999999999999689847--989999 Q gi|254780464|r 296 VLYIASATAKENIMALTSSIVEVVQSLLENIEQREIDKECAKIHAKLIKSQERSYLRALEISKQVMFCGSIL--CSEKII 373 (424) Q Consensus 296 ~~~i~~~~~~~~~~~~~~~i~~~i~~l~~~i~~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~--~~~~~~ 373 (424) .+.+.+.+.+++...+++.+.+.+... .++++++++.|..+...+....+++...+.......++++.+. ...... T Consensus 96 ~~~~~~~~~~~~l~~~l~ll~~~~~~p--~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (434) T 3gwb_A 96 VASLRSLSAVDKREPALKLFAEVVGKP--TFPADSLARIKNQMLAGFEYQKQNPGKLASLELMKRLYGTHPYAHASDGDA 173 (434) T ss_dssp EEEEEEECSHHHHHHHHHHHHHHHHSC--CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSTTSSCTTCCT T ss_pred EEEEEEECCHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCH T ss_conf 999997087899999999999997588--888899988899999998755269889999999998257764578887871 Q ss_pred HHHHCCCHHHHHHHHHHHCCCCC-EEEEEE Q ss_conf 98872798999999998627787-799981 Q gi|254780464|r 374 DTISAITCEDIVGVAKKIFSSTP-TLAILG 402 (424) Q Consensus 374 ~~i~~vt~~di~~~~~~~l~~~~-~i~~vg 402 (424) +.++++|.++++++.++++.++. +++++| T Consensus 174 ~~l~~~~~e~l~~~~~~~~~~~n~~l~i~G 203 (434) T 3gwb_A 174 KSIPPITLAQLKAFHAKAYAAGNVVIALVG 203 (434) T ss_dssp TTTTTCCHHHHHHHHHHHSCGGGEEEEEEE T ss_pred HHHHCCCHHHHHHHHHHCCCHHHEEEEECC T ss_conf 333128999999876423682330456558 No 24 >3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Probab=98.25 E-value=4e-05 Score=51.88 Aligned_cols=105 Identities=10% Similarity=0.097 Sum_probs=51.0 Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCCC--CHHHHH Q ss_conf 3444258302477787789999853148-998999999999999998513-898999999999999689847--989999 Q gi|254780464|r 298 YIASATAKENIMALTSSIVEVVQSLLEN-IEQREIDKECAKIHAKLIKSQ-ERSYLRALEISKQVMFCGSIL--CSEKII 373 (424) Q Consensus 298 ~i~~~~~~~~~~~~~~~i~~~i~~l~~~-i~~~el~~ak~~~~~~~~~~~-~~~~~~a~~l~~~~~~~~~~~--~~~~~~ 373 (424) .+++.+.+++.+.+++.+.+.+.....+ ++++++++.|+.+...+.... +++...+.+......+.+.+. +..-.. T Consensus 77 ~y~~~~~~~~~~~~l~ll~~~~~~p~~~~f~~~~~e~ek~~i~~e~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~G~~ 156 (431) T 3cx5_A 77 SYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATKKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTL 156 (431) T ss_dssp EEEEEECSTTHHHHHHHHHHHHHTCSTTTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTTSGGGSCTTCCH T ss_pred EEEEEECHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH T ss_conf 99999677779999999999985603443798999999999999999876522589999999999669998888995798 Q ss_pred HHHHCCCHHHHHHHHHHHCCCCCEE-EEEE Q ss_conf 9887279899999999862778779-9981 Q gi|254780464|r 374 DTISAITCEDIVGVAKKIFSSTPTL-AILG 402 (424) Q Consensus 374 ~~i~~vt~~di~~~~~~~l~~~~~i-~~vg 402 (424) +.|+++|.+||+++.++++.++..+ +++| T Consensus 157 ~~i~~it~e~l~~f~~~~y~p~n~~l~i~G 186 (431) T 3cx5_A 157 ESLENLVVADLESFANNHFLNSNAVVVGTG 186 (431) T ss_dssp HHHHTCCHHHHHHHHHHHSCGGGEEEEEEE T ss_pred HHHHHCCHHHHHHHHHHHCCCCCCEEEECC T ss_conf 997346999999999841488722477348 No 25 >3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Probab=98.24 E-value=1.6e-05 Score=54.55 Aligned_cols=163 Identities=10% Similarity=0.119 Sum_probs=98.0 Q ss_pred CCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCC----CCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 3684321023010000135211356899877762487653----222200026862101333222101220134442583 Q gi|254780464|r 230 KRDLAEEHMMLGFNGCAYQSRDFYLTNILASILGDGMSSR----LFQEVREKRGLCYSISAHHENFSDNGVLYIASATAK 305 (424) Q Consensus 230 ~~~~~~~~i~~~~~~~~~~~~d~~al~ll~~iLg~g~sSr----L~~~lRe~~glaY~v~s~~~~~~~~g~~~i~~~~~~ 305 (424) +.+.+-+.+.+.+.+-++.++..=...++.+++..|...+ +.+ ..+..|-.+++++ ..-.+.++..+.+ T Consensus 7 d~~~~~~~~~~~~~~Gs~~E~~~G~ah~lehm~f~gT~~~s~~~i~~-~le~~Gg~~na~t------~~d~t~y~~~~~~ 79 (352) T 3cx5_B 7 DAPTKISTLAVKVHGGSRYATKDGVAHLLNRFNFQNTNTRSALKLVR-ESELLGGTFKSTL------DREYITLKATFLK 79 (352) T ss_dssp CCSCSEEEEEEEESCSGGGCSSTTHHHHHHHHTTSCBSSSCHHHHHH-HHHHHTCEEEEEE------CSSCEEEEEEEEG T ss_pred CCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHH-HHHHHCCEEEEEE------CCCEEEEEEEECC T ss_conf 59998699999981217889968799999999707989999999999-9998299899998------4572899999764 Q ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHH Q ss_conf 0247778778999985314899899999-999999999851389899999999999968984798999998872798999 Q gi|254780464|r 306 ENIMALTSSIVEVVQSLLENIEQREIDK-ECAKIHAKLIKSQERSYLRALEISKQVMFCGSILCSEKIIDTISAITCEDI 384 (424) Q Consensus 306 ~~~~~~~~~i~~~i~~l~~~i~~~el~~-ak~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~i~~vt~~di 384 (424) ++++.+++.+.+.+..- .+.++|+++ .+..++..+....+++..++.+......+..+....- ..+.|+++|.+|| T Consensus 80 ~~l~~~l~ll~d~l~~p--~f~~~e~~~~~~~~i~~e~~~~~~~p~~~~~~~l~~~~f~~~lg~~~-~~e~i~~it~~dl 156 (352) T 3cx5_B 80 DDLPYYVNALADVLYKT--AFKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAITFRKGLGNPL-LYDGVERVSLQDI 156 (352) T ss_dssp GGHHHHHHHHHHHHHHB--CCCHHHHHHTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTTTSCS-SCCSSSCCCHHHH T ss_pred HHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCC-CCCCHHCCCHHHH T ss_conf 40799999999986488--77599999988888899998753273878888999986178889867-7142310789999 Q ss_pred HHHHHHHCCCCCEE-EEEE Q ss_conf 99999862778779-9981 Q gi|254780464|r 385 VGVAKKIFSSTPTL-AILG 402 (424) Q Consensus 385 ~~~~~~~l~~~~~i-~~vg 402 (424) +++.++++.++..+ +++| T Consensus 157 ~~f~~~~y~p~n~vl~~~G 175 (352) T 3cx5_B 157 KDFADKVYTKENLEVSGEN 175 (352) T ss_dssp HHHHHHHCCGGGEEEEEES T ss_pred HHHHHHCCCCCCEEEEEEC T ss_conf 9999960376777999972 No 26 >1pp9_B Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein, cytochrome B; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* 1bcc_B* ... Probab=98.19 E-value=3.2e-05 Score=52.52 Aligned_cols=164 Identities=9% Similarity=0.024 Sum_probs=100.5 Q ss_pred CCCCCCCEEEECCCCCCCCC-CHHH-HHHHHHHHHHCCCCCC----CCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEC Q ss_conf 36843210230100001352-1135-6899877762487653----2222000268621013332221012201344425 Q gi|254780464|r 230 KRDLAEEHMMLGFNGCAYQS-RDFY-LTNILASILGDGMSSR----LFQEVREKRGLCYSISAHHENFSDNGVLYIASAT 303 (424) Q Consensus 230 ~~~~~~~~i~~~~~~~~~~~-~d~~-al~ll~~iLg~g~sSr----L~~~lRe~~glaY~v~s~~~~~~~~g~~~i~~~~ 303 (424) ....+...+.+.+.+.+..+ ++.. ...++.+++..|...+ +.+.+ +..|. ....+...-...+++.| T Consensus 39 ~~~~p~~~i~l~v~~Gs~~E~~~~~G~ahllehl~~~Gt~~~~~~~i~~~~-~~~G~------~~na~t~~~~t~y~~~~ 111 (439) T 1pp9_B 39 ENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGI-EAVGG------KLSVTSTRENMAYTVEC 111 (439) T ss_dssp CCCCSEEEEEEEESCSGGGCCTTSTTHHHHHHHTTTSCBSSSCHHHHHHHH-HHTTC------EEEEEECSSCEEEEEEE T ss_pred ECCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHH-HHHCC------EEEEEECCCEEEEEEEE T ss_conf 589987999999821237889797649999999984799988999999999-98399------89999835718999997 Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHCCCHH Q ss_conf 8302477787789999853148998999999999999998513898999999999999689847-989999988727989 Q gi|254780464|r 304 AKENIMALTSSIVEVVQSLLENIEQREIDKECAKIHAKLIKSQERSYLRALEISKQVMFCGSIL-CSEKIIDTISAITCE 382 (424) Q Consensus 304 ~~~~~~~~~~~i~~~i~~l~~~i~~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~-~~~~~~~~i~~vt~~ 382 (424) ..++.+.+++.+.+.+.. -.++++++++.|..++..+....+++..++.......+++.+.. ...--.+.|+++|.+ T Consensus 112 ~~~~~~~~l~ll~~~~~~--p~~~~~~~~~ek~~i~~e~~~~~~~p~~~~~~~l~~~~f~~~~~~~~~g~~~~i~~lt~~ 189 (439) T 1pp9_B 112 LRDDVDILMEFLLNVTTA--PEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCPDYRIGKVTPV 189 (439) T ss_dssp EGGGHHHHHHHHHHHHHC--BCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHBSSGGGSCSSCCGGGTTTCCHH T ss_pred CHHHHHHHHHHHHHCCCC--CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCHH T ss_conf 463179999999732137--610399999999888787666404828888999999834355688745676662436899 Q ss_pred HHHHHHHHHCCCCCEEEEEE Q ss_conf 99999998627787799981 Q gi|254780464|r 383 DIVGVAKKIFSSTPTLAILG 402 (424) Q Consensus 383 di~~~~~~~l~~~~~i~~vg 402 (424) |++++.++++.++..+++++ T Consensus 190 ~l~~f~~~~y~p~n~~iv~~ 209 (439) T 1pp9_B 190 ELHDYVQNHFTSARMALIGL 209 (439) T ss_dssp HHHHHHHHHCSGGGEEEEEE T ss_pred HHHHHHHHHCCCCCEEEECC T ss_conf 99999985058676376547 No 27 >3d3y_A Uncharacterized protein; APC29635, conserved protein, structural genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis V583} Probab=98.17 E-value=7e-05 Score=50.25 Aligned_cols=179 Identities=13% Similarity=0.186 Sum_probs=93.5 Q ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCC-CCCCCCC----CCCCCHHHHHHHHHHCCCCEEEEEEC----- Q ss_conf 3210230100001352113568998777624876532-2220002----68621013332221012201344425----- Q gi|254780464|r 234 AEEHMMLGFNGCAYQSRDFYLTNILASILGDGMSSRL-FQEVREK----RGLCYSISAHHENFSDNGVLYIASAT----- 303 (424) Q Consensus 234 ~~~~i~~~~~~~~~~~~d~~al~ll~~iLg~g~sSrL-~~~lRe~----~glaY~v~s~~~~~~~~g~~~i~~~~----- 303 (424) +...+.+.|.++ ...+......++.++|..|....- .+.+++. .|..++++... ..+.-.+.+++.+ T Consensus 23 ~~~~i~~~~~~~-~~~e~~~~~~ll~~ll~~gt~~~~~~~~l~~~l~~l~G~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 99 (425) T 3d3y_A 23 KTVRLLVRFNTR-LNHETITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVSK--KGNQHWFNISMNIVNDHY 99 (425) T ss_dssp SEEEEEEEEEEE-CCTTTHHHHHHHHHHHHHCCSSSCSHHHHHHHHHHTTSCEEEEEEEE--ETTEEEEEEEEEEECGGG T ss_pred CEEEEEEEEECC-CCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCEEEEEEEC--CCCEEEEEEEEEECCHHH T ss_conf 569999999489-88542079999999997023579999999999998639747888603--675179999988615221 Q ss_pred --CCCHHHHHHHHHHHHHHH--HCC-CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CCCHH--HHHHH Q ss_conf --830247778778999985--314-89989999999999999985138989999999999996898-47989--99998 Q gi|254780464|r 304 --AKENIMALTSSIVEVVQS--LLE-NIEQREIDKECAKIHAKLIKSQERSYLRALEISKQVMFCGS-ILCSE--KIIDT 375 (424) Q Consensus 304 --~~~~~~~~~~~i~~~i~~--l~~-~i~~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~-~~~~~--~~~~~ 375 (424) +++.++++++.+.+.+.. +.+ .++++++++.|..++..+....+++...+.......+++.. +.... -..+. T Consensus 100 ~~~~~~l~~~l~ll~d~l~~p~~~~~~f~~~~~e~ek~~i~~el~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~G~~e~ 179 (425) T 3d3y_A 100 LQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVEDKQTYASLALQSVYFNQSEDQKIPSFGTVAA 179 (425) T ss_dssp CSSCCHHHHHHHHHHHHHHSCSEETTEECHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTTTCTTTTSCTTCCHHH T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH T ss_conf 24557699999999999868676534689999999999999999987459999999999998478999887899889999 Q ss_pred HHCCCHHHHHHHHHHHCCCCC-EEEEEECCCCCCCCHHHHHHHHHH Q ss_conf 872798999999998627787-799981660108998999998843 Q gi|254780464|r 376 ISAITCEDIVGVAKKIFSSTP-TLAILGPPMDHVPTTSELIHALEG 420 (424) Q Consensus 376 i~~vt~~di~~~~~~~l~~~~-~i~~vgp~~~~~P~~~~l~~~l~~ 420 (424) |+++|.++|+++.++|+.++. .++++| +.+ .+++.+.++. T Consensus 180 i~~it~e~l~~fy~~~y~p~n~~l~v~G-d~d----~~~v~~~~~~ 220 (425) T 3d3y_A 180 LAEETAASLAAYYQKMLAEDQVDIFVLG-DVN----EAELVPLFKQ 220 (425) T ss_dssp HHHCCHHHHHHHHHHHHHHSEEEEEEEE-SCC----HHHHHHHHHT T ss_pred HHHCCHHHHHHHHHHCCCCCCEEEEEEC-CCC----HHHHHHHHHH T ss_conf 8638999999987623477756999952-799----9999999998 No 28 >3ih6_A Putative zinc protease; bordetella pertussis tohama I, structural genomics, PSI-2, protein structure initiative; 2.15A {Bordetella pertussis} PDB: 3ivl_A Probab=98.05 E-value=6.3e-07 Score=63.98 Aligned_cols=171 Identities=12% Similarity=0.048 Sum_probs=101.1 Q ss_pred CCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC--EEEEEE--CCCE--E Q ss_conf 719999858998799999983311448888983489999897335688898899999997087--679975--3223--7 Q gi|254780464|r 11 GITVITEVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEIEKVGG--DINAYT--SLEH--T 84 (424) Q Consensus 11 Gl~v~~~~~~~~~~~i~~~~~~Gs~~e~~~~~G~ah~lehl~~~gt~~~~~~~~~~~l~~~G~--~~na~t--~~d~--~ 84 (424) |-|.++.+.+++...+.+.+++-+..++ +.. ...++..++..|. +. .|.+.+-..|. ...++. ..+. + T Consensus 12 ~~r~~~v~~~~~~~~v~~~~~~p~~~~~-d~~-al~vl~~iLg~g~---sS-rL~~~L~e~~l~~~~~a~~~~~~~~g~f 85 (197) T 3ih6_A 12 GERSVTLRRAGGTPLVAAMYHLPAAGSP-DFV-GLDLAATILADTP---SS-RLYHALVPTKLASGVFGFTMDQLDPGLA 85 (197) T ss_dssp ----------CCSCEEEEEEECCCTTST-THH-HHHHHHHHHHSST---TS-HHHHHHTTTTSCSEEEEEEETTSSSCEE T ss_pred CCEEEEEECCCCCCEEEEEECCCCCCCC-CHH-HHHHHHHHHCCCC---CC-HHHHHHCCCCCEEEEEECCCCCCCCCEE T ss_conf 8679998278760024778627999992-099-9999999977998---46-8999826466436887415655678338 Q ss_pred EEEEECCCC-CCCCCHHHHHHH---HHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHH Q ss_conf 999612665-652100122232---2103566200112455676666511332111000000122222222222222103 Q gi|254780464|r 85 SYHAWVLKE-HVPLALEIIGDM---LSNSSFNPSDIERERNVVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKP 160 (424) Q Consensus 85 ~~~~~~~~~-~~~~~l~ll~~~---~~~p~~~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~f~~~~~~~~~~g~~ 160 (424) .+++.+.++ +++.+.+.+.+. +.+-.++++++++.|..++..+....+++...+.......++++ + ....-.. T Consensus 86 ~i~~~~~~~~~~~~~~~~i~~~l~~l~~~~it~eeL~~aK~~~~~~~~~~~~s~~~~a~~l~~~~~~g~-~--~~~~~~~ 162 (197) T 3ih6_A 86 MFGAQLQPGMDQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADPEKVGVALSEAIASGD-W--RLFFLQR 162 (197) T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHTTC-T--THHHHHH T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-H--HHHHHHH T ss_conf 999970655469999999999999876424529999999999999898863799999999999997599-6--5699999 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHCC Q ss_conf 442000166776420112456630000025 Q gi|254780464|r 161 ETISSFTPEKIISFVSRNYTADRMYVVCVG 190 (424) Q Consensus 161 ~~i~~lt~~~l~~f~~~~y~p~n~~l~i~G 190 (424) +.|+++|.+||+++.++|+.|+|+++++.+ T Consensus 163 ~~i~~vT~~dv~~~a~~yl~~~~~~v~~~~ 192 (197) T 3ih6_A 163 DRVREAKLDDVQRAAVAYLVRSNRTEGRYI 192 (197) T ss_dssp HHHHTCCHHHHHHHHHHHSSGGGCEEEEEC T ss_pred HHHHCCCHHHHHHHHHHHCCCCCCEEEEEE T ss_conf 999878999999999996780172899993 No 29 >3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Probab=98.04 E-value=1.7e-05 Score=54.36 Aligned_cols=101 Identities=21% Similarity=0.258 Sum_probs=54.5 Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC--HHHHHH Q ss_conf 344425830247778778999985314-89989999999999999985138989999999999996898479--899999 Q gi|254780464|r 298 YIASATAKENIMALTSSIVEVVQSLLE-NIEQREIDKECAKIHAKLIKSQERSYLRALEISKQVMFCGSILC--SEKIID 374 (424) Q Consensus 298 ~i~~~~~~~~~~~~~~~i~~~i~~l~~-~i~~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~--~~~~~~ 374 (424) .+.+.+.++....+ ...+..+.. .+.++++++.+...........+.+...+........+++.+.. .....+ T Consensus 85 ~y~~~~~~~~~~~l----~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 160 (406) T 3eoq_A 85 VYYGAVLPEFAYDL----LGLFAKLLRPALREEDFQTEKLVILEEIARYQDRPGFMAYEWARARFFQGHPLGNSVLGTRE 160 (406) T ss_dssp EEEEEECGGGHHHH----HHHHHHHTSCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGGGCCSSCCHH T ss_pred EEECCCHHHHHHHH----HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCHH T ss_conf 33101001029999----99887641763244668999999998776531580555678999997412877787726899 Q ss_pred HHHCCCHHHHHHHHHHHCCCCCE-EEEEE Q ss_conf 88727989999999986277877-99981 Q gi|254780464|r 375 TISAITCEDIVGVAKKIFSSTPT-LAILG 402 (424) Q Consensus 375 ~i~~vt~~di~~~~~~~l~~~~~-i~~vg 402 (424) .|+++|.++++++.++++.++.. ++++| T Consensus 161 ~l~~~~~~~l~~f~~~~~~p~~~~l~i~G 189 (406) T 3eoq_A 161 SITALTREGMAAYHRRRYLPKNMVLAATG 189 (406) T ss_dssp HHHHCCHHHHHHHHHHHCCGGGEEEEEEE T ss_pred HHHCCCHHHHHHHHHHCCCCCCEEEEECC T ss_conf 98407799999987533687665998305 No 30 >3go9_A Insulinase family protease; IDP00573, structural genomics, center for structural genomics of infectious diseases, csgid, hydrolase; HET: MSE; 1.62A {Yersinia pestis} Probab=97.29 E-value=3.4e-05 Score=52.36 Aligned_cols=35 Identities=9% Similarity=0.107 Sum_probs=15.7 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHH Q ss_conf 35689987776248765322220002686210133 Q gi|254780464|r 252 FYLTNILASILGDGMSSRLFQEVREKRGLCYSISA 286 (424) Q Consensus 252 ~~al~ll~~iLg~g~sSrL~~~lRe~~glaY~v~s 286 (424) ++...++..+++....++|....+...++.|+++. T Consensus 289 ~~~~~l~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ 323 (492) T 3go9_A 289 YWRSDLAREALFWHIKQVLEKNNQKNLKLGFDCRV 323 (492) T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCTTCEEEEEEEE T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE T ss_conf 99986414456778999999740652599985111 No 31 >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO2589, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} Probab=40.75 E-value=12 Score=15.20 Aligned_cols=16 Identities=13% Similarity=0.256 Sum_probs=6.6 Q ss_pred HHHHHHHCCC----CCCCCC Q ss_conf 6776420112----456630 Q gi|254780464|r 169 EKIISFVSRN----YTADRM 184 (424) Q Consensus 169 ~~l~~f~~~~----y~p~n~ 184 (424) +.|.+++.+. +.|+++ T Consensus 75 ~aia~~~~~~~g~~~~~~~i 94 (391) T 3h14_A 75 QRIARLYGEWYGVDLDPGRV 94 (391) T ss_dssp HHHHHHHHHHHCCCCCGGGE T ss_pred HHHHHHHHHHHCCCCCCCEE T ss_conf 99999988875899980519 No 32 >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* Probab=38.77 E-value=15 Score=14.57 Aligned_cols=17 Identities=6% Similarity=0.249 Sum_probs=8.0 Q ss_pred HHHHHHHHCCC----CCCCCC Q ss_conf 66776420112----456630 Q gi|254780464|r 168 PEKIISFVSRN----YTADRM 184 (424) Q Consensus 168 ~~~l~~f~~~~----y~p~n~ 184 (424) ++.+.+|+.+. +.|+++ T Consensus 72 R~aia~~~~~~~g~~~~~d~I 92 (399) T 1c7n_A 72 KKTVKKWMKDRHQWDIQTDWI 92 (399) T ss_dssp HHHHHHHHHHHHCCCCCGGGE T ss_pred HHHHHHHHHHHHCCCCCCCEE T ss_conf 999999999983899982029 No 33 >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C- terminal domain, open alpha-beta structure.; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 Probab=35.89 E-value=16 Score=14.28 Aligned_cols=22 Identities=9% Similarity=0.060 Sum_probs=10.0 Q ss_pred HHHHHHHHCCC----CCCCCCHHHHCC Q ss_conf 66776420112----456630000025 Q gi|254780464|r 168 PEKIISFVSRN----YTADRMYVVCVG 190 (424) Q Consensus 168 ~~~l~~f~~~~----y~p~n~~l~i~G 190 (424) ++.+.+||.+. +.|++++ +..| T Consensus 70 r~aia~~~~~~~g~~~~~e~v~-it~G 95 (390) T 1d2f_A 70 LAAIAHWFSTQHYTAIDSQTVV-YGPS 95 (390) T ss_dssp HHHHHHHHHHHSCCCCCGGGEE-EESC T ss_pred HHHHHHHHHHHHCCCCCCCEEE-ECCC T ss_conf 9999999999868999803699-8745 No 34 >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} Probab=35.41 E-value=15 Score=14.57 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=10.5 Q ss_pred HHHHHHHHCCCC----CCCCCHHHHCC Q ss_conf 667764201124----56630000025 Q gi|254780464|r 168 PEKIISFVSRNY----TADRMYVVCVG 190 (424) Q Consensus 168 ~~~l~~f~~~~y----~p~n~~l~i~G 190 (424) ++-+.+|+++.| .|++ +++..| T Consensus 68 r~aia~~~~~~~g~~v~~d~-Iiit~G 93 (391) T 3dzz_A 68 YKAVADWEEIEHRARPKEDW-CVFASG 93 (391) T ss_dssp HHHHHHHHHHHHSCCCCGGG-EEEESC T ss_pred HHHHHHHHHHHHCCCCCCCE-EEECCC T ss_conf 99999999998689999366-998688 No 35 >1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1 Probab=31.34 E-value=14 Score=14.63 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=8.1 Q ss_pred CCCHHHHHHHHHH Q ss_conf 2798999999998 Q gi|254780464|r 378 AITCEDIVGVAKK 390 (424) Q Consensus 378 ~vt~~di~~~~~~ 390 (424) .|+.++|.++++. T Consensus 260 GI~~~ni~~ya~~ 272 (296) T 1qap_A 260 NVTAETLREFAET 272 (296) T ss_dssp CSCHHHHHHHHHT T ss_pred CCCHHHHHHHHHC T ss_conf 9999999999976 No 36 >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Probab=30.61 E-value=20 Score=13.71 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=11.8 Q ss_pred CCCHHHHHHHHHHHHHHHH Q ss_conf 8302477787789999853 Q gi|254780464|r 304 AKENIMALTSSIVEVVQSL 322 (424) Q Consensus 304 ~~~~~~~~~~~i~~~i~~l 322 (424) ....++.+.+.+.+.+... T Consensus 381 ~g~Gid~L~~~I~~~l~~~ 399 (476) T 3gee_A 381 NGDGIDTLKQHMGDLVKNL 399 (476) T ss_dssp TTBSHHHHHHHHTHHHHSS T ss_pred CCCCHHHHHHHHHHHHHCC T ss_conf 5558999999999998614 No 37 >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, SGC, alternative splicing, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} Probab=29.49 E-value=21 Score=13.59 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=8.6 Q ss_pred HHCCCCCCCHHHHHHHHH Q ss_conf 210356620011245567 Q gi|254780464|r 106 LSNSSFNPSDIERERNVV 123 (424) Q Consensus 106 ~~~p~~~~~~~~~ek~~v 123 (424) +..|.|+++.+++.++.+ T Consensus 97 ~~~~~fP~~~~~~a~~~l 114 (498) T 3ihj_A 97 LDSPSFPEDAKKRARRIL 114 (498) T ss_dssp GGCSSSCHHHHHHHHHHH T ss_pred CCCCCCCHHHHHHHHHHH T ss_conf 787779899999999999 No 38 >3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor} Probab=26.97 E-value=14 Score=14.65 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=7.4 Q ss_pred CCCHHHHHHHHHH Q ss_conf 2798999999998 Q gi|254780464|r 378 AITCEDIVGVAKK 390 (424) Q Consensus 378 ~vt~~di~~~~~~ 390 (424) .||.+.|.++++. T Consensus 283 GI~~~ni~~yA~t 295 (320) T 3paj_A 283 NITLDNLKECAET 295 (320) T ss_dssp SCCHHHHHHHHTT T ss_pred CCCHHHHHHHHHC T ss_conf 9989999999981 No 39 >1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, monomer, lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} SCOP: c.79.1.1 Probab=25.70 E-value=24 Score=13.15 Aligned_cols=29 Identities=14% Similarity=0.298 Sum_probs=19.3 Q ss_pred CCCCC-HHHHCCCCCHHHHHHHHHHCCCCCCC Q ss_conf 56630-00002545512211221101235877 Q gi|254780464|r 180 TADRM-YVVCVGAVDHEFCVSQVESYFNVCSV 210 (424) Q Consensus 180 ~p~n~-~l~i~Gd~~~~~~~~~i~~~f~~~~~ 210 (424) ..+|. ++.|-|+| |+...++++.|.+... T Consensus 201 ~~~Nv~~i~v~G~F--DDcQ~~VK~~f~d~~~ 230 (514) T 1kl7_A 201 PDENVQTLSVTGTF--DNCQDIVKAIFGDKEF 230 (514) T ss_dssp CCTTEEEEEESSCH--HHHHHHHHHHHHCSSC T ss_pred CCCCEEEEEECCCH--HHHHHHHHHHHCCHHH T ss_conf 79988999954786--9987999998503434 No 40 >1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus HB8} Probab=23.92 E-value=18 Score=13.96 Aligned_cols=13 Identities=23% Similarity=0.202 Sum_probs=8.5 Q ss_pred CCCHHHHHHHHHH Q ss_conf 2798999999998 Q gi|254780464|r 378 AITCEDIVGVAKK 390 (424) Q Consensus 378 ~vt~~di~~~~~~ 390 (424) .|+.++|.++++. T Consensus 248 GI~~~ni~~ya~~ 260 (286) T 1x1o_A 248 NMTLERAKAAAEA 260 (286) T ss_dssp SCCHHHHHHHHHH T ss_pred CCCHHHHHHHHHC T ss_conf 9999999999976 No 41 >3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis} Probab=23.21 E-value=21 Score=13.54 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=7.3 Q ss_pred HHHHHHHHHCCCCCCC Q ss_conf 8998777624876532 Q gi|254780464|r 255 TNILASILGDGMSSRL 270 (424) Q Consensus 255 l~ll~~iLg~g~sSrL 270 (424) +..-....|||.+-|+ T Consensus 160 l~k~Av~~GGg~~HR~ 175 (300) T 3l0g_A 160 LDKYSVCIGGGESYRD 175 (300) T ss_dssp HHHHHHHHTTCBCSCS T ss_pred HHHHHHHHCCCCCCCC T ss_conf 9999999669875147 No 42 >1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C Probab=21.94 E-value=28 Score=12.68 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=19.0 Q ss_pred CHHHHHHHHHCCCHHHHHHHHHHH Q ss_conf 989999988727989999999986 Q gi|254780464|r 368 CSEKIIDTISAITCEDIVGVAKKI 391 (424) Q Consensus 368 ~~~~~~~~i~~vt~~di~~~~~~~ 391 (424) ..++..++|+++|..++-+..+.+ T Consensus 2 ~~eeiv~aiekltvaelaelvk~l 25 (30) T 1zav_U 2 TIDEIIEAIEKLTVSELAELVKKL 25 (30) T ss_dssp CHHHHHHHHHHSBHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 799999999996199999999998 No 43 >3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei} Probab=21.07 E-value=23 Score=13.32 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=6.3 Q ss_pred HHHHHHHHHCCCCCC Q ss_conf 899877762487653 Q gi|254780464|r 255 TNILASILGDGMSSR 269 (424) Q Consensus 255 l~ll~~iLg~g~sSr 269 (424) +..-....|||.+-| T Consensus 162 l~k~Av~~GGg~~HR 176 (298) T 3gnn_A 162 AQKYAVRVGGGANQR 176 (298) T ss_dssp HHHHHHHHTTCCCC- T ss_pred HHHHHHHHCCCCCCC T ss_conf 988885652734345 No 44 >1o4u_A Type II quinolic acid phosphoribosyltransferase; TM1645, structural genomics, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1 Probab=20.36 E-value=20 Score=13.68 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=6.2 Q ss_pred HHHHHHHHHCCCCCC Q ss_conf 899877762487653 Q gi|254780464|r 255 TNILASILGDGMSSR 269 (424) Q Consensus 255 l~ll~~iLg~g~sSr 269 (424) +..-....|||.+-| T Consensus 145 l~k~Av~~GGg~~HR 159 (285) T 1o4u_A 145 LQKIAVVHGGGDPHR 159 (285) T ss_dssp HHHHHHHHHTCC--- T ss_pred HHHHHHHHHCCCCCC T ss_conf 999999860700345 Done!